LOCUS       DAXIFD010000001        54891 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.001, whole genome shotgun sequence.
ACCESSION   DAXIFD010000001 DAXIFD010000000
VERSION     DAXIFD010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 54891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 54891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..54891
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.001"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(44..811)
                     /locus_tag="ACFOCN_000001"
     CDS             complement(44..811)
                     /locus_tag="ACFOCN_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HFC6969228.1"
                     /translation="MSSNKASFFTRLRRLCRLTVWLFKTGKNLRGIDGGCPESRNRAV
                     IELGRGALTALDIGLEVGRPAPEHPNGVLVAANHVSWLDIFAMSAVYPSSFIAKQEIK
                     SWPVLGKMGQNAGTVFINRNSRRDIEPINRAVYETLQRGQNVSFFPEARTSSGLGLLP
                     FKAALFQSAIDAGAKVLAVALRYYDETGKRTARPSYADVGLPTCLWRIVSMKKLTIKV
                     DFVCVADAAESEDRYALKDKIEESIRAVVADDADIAV"
     gene            complement(899..1726)
                     /gene="mutM"
                     /locus_tag="ACFOCN_000002"
     CDS             complement(899..1726)
                     /gene="mutM"
                     /locus_tag="ACFOCN_000002"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HFC6969229.1"
                     /translation="MPELPEVETTLRGIAPHIEGKTVEAVVLRQLKLRWQINPDLGEI
                     LSGRQVLSCGRRAKYLIVRFQTGILLIHLGMSGSLRIFTPSDGRIGRPDRHDHVDIVF
                     SDGTVMRYRDPRKFGAILWYEGIEEHHPLLEKLGPEPLSEAFCADYLYVRLKAQKRAV
                     KLALMDNAVVVGVGNIYANESLFRAGISPHRPANRLKKKECALLVETVKAVLRRAIET
                     GGSTLRDFVDSDGKSGYFQQEYTVYGRHNQPCPQCGGLVVKETLGQRGTFYCPNCQK"
     gene            complement(1778..2443)
                     /locus_tag="ACFOCN_000003"
     CDS             complement(1778..2443)
                     /locus_tag="ACFOCN_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HFC6969230.1"
                     /translation="MDSWFEDTAMGRYVAKLEQDFFGRYLDSYRFSGMCAVQVGGPWL
                     SLSEDVVCVPRDMSMSAENMALADVSADMLLFPHTLEGGVPSQILSEAHRILKPSGRL
                     MLTGFNPYSLWGFSRWFDGERLPEKRFCLPLPELKRQLADVGFDIEFGKFMVYLPPVS
                     SLGQIRFWRFMEKAGDRWWPQCAAVYGLVLVKRAAGVTPLPAWDGYLGGKALAAGAAR
                     IAD"
     gene            2622..4598
                     /locus_tag="ACFOCN_000004"
     CDS             2622..4598
                     /locus_tag="ACFOCN_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6969231.1"
                     /translation="MSKLKTIALTASGLSVCPGFLYAQNTSSHQIGLAIMRLNSSILD
                     LPPTKQYFQSGSLWSELRQGFRMGEVNPELVRRHESKFIASHSYFNRVINRSRPYMYH
                     IANEVKKRNMPAEAALLPFIESAFVTKAKSHVGASGLWQFMPATGRHYGLEKTPVYDG
                     RHDVYAATDAALNYLQYLYGLFGDWPLAFAAYNWGEGNVGRAINRARAQGLEPTYENL
                     RMPNETRNYVPKLLAVRNIIATPQSFGMNISDIDNKPYFQAVEPDRPLDNEAIARLAG
                     ITQSELLALNPAFNVPAFIPKSKRKLLLPVASVQTFQSNYLNAAPDSLFSWEVYTPAA
                     KTSLSDISTATGMSIADIKRLNNLNGNLVNAGRSILVAKNGKTLQTASESVVSIDIDN
                     TPDTYRSNMPAGTVNVGIARIRPAAAQTADITVAPLPQKTVRTEPDPLVRIAEPALAT
                     AAAQPQTEKQTAMPSETQTATLAQIIPQNDMQAADELMQLVARNNLRRQAEETISAVI
                     GTPDTVAEHNISSSPQHTVAADGKRRARLETRVAKAADGEAEISPLHASIHRVVEGDT
                     LFNIAKRYNVSVADLIVANNIKGNTIQKGQVLRLAQAAPAQTRIEKVSYTARKGDTFK
                     SIAARFNIHIDDIRRLNPNLNTINPGQRVKLIGS"
     gene            4666..5358
                     /locus_tag="ACFOCN_000005"
     CDS             4666..5358
                     /locus_tag="ACFOCN_000005"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0140098 - catalytic activity, acting on
                     RNA [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase"
                     /protein_id="HFC6969232.1"
                     /translation="MKLIKYLQYQGIGSRKQCQWLIAGGYVFINGTCMDDTDADIDSS
                     SVETLDIDGEAVTVVPEPYFYIMLNKPEDYETSHKPKHYRSVFSLFPDNMRNIDMQAV
                     GRLDADTTGVLLITNDGKLNHNLTSPSRKIPKLYEVTLKHPTGETLCETLKNGVLLHD
                     ENETVCAADAVLENPTTLLLTITEGKYHQVKRMIAAVGNRVQHLHRRRFAHLETENLK
                     PGEWKFIDCPKF"
     gene            5899..7214
                     /locus_tag="ACFOCN_000006"
                     /pseudo
     CDS             5899..7214
                     /locus_tag="ACFOCN_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519747.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
     gene            7458..8114
                     /gene="cmk"
                     /locus_tag="ACFOCN_000007"
     CDS             7458..8114
                     /gene="cmk"
                     /locus_tag="ACFOCN_000007"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - (d)CMP kinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HFC6969233.1"
                     /translation="MNRQKVIAIDGPGASGKGTVAARVAAALGYDYLDTGALYRLTAL
                     YAQKQGVGWHDEENVSELAKKLPAVFSGSRILLGGEDVSDGIRTEAIGMGASAVAQLP
                     KVRAALLQRQRDFLTEKGLVADGRDTGSVVFPQAELKIFLTAESKIRAERRAKQIGIP
                     CEGLAFERILSDIEARDEADRNRKVAPLKQQPDALLLDTSRLTIEETVKKVLDWYREV
                     "
     gene            8270..9955
                     /gene="rpsA"
                     /locus_tag="ACFOCN_000008"
     CDS             8270..9955
                     /gene="rpsA"
                     /locus_tag="ACFOCN_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HFC6969234.1"
                     /translation="MSMENFAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLK
                     SESLIDVAEFKNAQGEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEA
                     MENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKL
                     DKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL
                     LHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYP
                     QGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL
                     EIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLV
                     HLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVND
                     KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVT
                     VDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGTTSLGDLLKAKLSGEQE"
     gene            9966..10280
                     /locus_tag="ACFOCN_000009"
     CDS             9966..10280
                     /locus_tag="ACFOCN_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HFC6969235.1"
                     /translation="MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLAR
                     GQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALKEN
                     AN"
     gene            complement(10630..11037)
                     /locus_tag="ACFOCN_000010"
     CDS             complement(10630..11037)
                     /locus_tag="ACFOCN_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HFC6969236.1"
                     /translation="MTYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDN
                     DLQWLGLLQCLKNTGMSLKDIKRFAECTVIGDDTIEERLSLFENQIENVKCQIAELKR
                     YLDLLEYKLAFYQKAKALGSVKAVNLPQIPETA"
     gene            11185..12294
                     /locus_tag="ACFOCN_000011"
     CDS             11185..12294
                     /locus_tag="ACFOCN_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000842106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase (NAD+)
                     activity, zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase [NAD(P)+] activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HFC6969237.1"
                     /translation="MKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDA
                     FTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVSSVKPGDHVIPLYTAECGECEFCCSGK
                     TNLCVSVRDTQGKGLMPDGTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEAN
                     HEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPSKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALES
                     AHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPKMVEDSMKGD
                     IELEPFVTHTMTLDQINKAFDLMHEGKSIRAVIHY"
     gene            12303..13130
                     /gene="fghA"
                     /locus_tag="ACFOCN_000012"
     CDS             12303..13130
                     /gene="fghA"
                     /locus_tag="ACFOCN_000012"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011961786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018738 - S-formylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0046294 - formaldehyde catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HFC6969238.1"
                     /translation="MKLIEQHQIFGGSQQVWAHHAQTLQCEMKFAVYLPNNPENRPLG
                     VIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVASDSSPRGEQVPNDDAYDLGQGAGF
                     YLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQE
                     RYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQG
                     LEDEFLPTQLRTEDFIETCRAANQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK"
     gene            13521..14672
                     /gene="zapE"
                     /locus_tag="ACFOCN_000013"
     CDS             13521..14672
                     /gene="zapE"
                     /locus_tag="ACFOCN_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HFC6969239.1"
                     /translation="MSNRDQLFKAPPFENHSPLTWYQAASQLPNFIRDDAQAAAIEHL
                     DRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKR
                     RVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRL
                     LENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRT
                     LRPAEIFFTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDF
                     RALCFGPRSQSDYLYLAEHYEMVFISGLEQLSPQEKAEARRLTWLIDVLYDFRVKLCA
                     TGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG"
     gene            14731..15156
                     /gene="ndk"
                     /locus_tag="ACFOCN_000014"
     CDS             14731..15156
                     /gene="ndk"
                     /locus_tag="ACFOCN_000014"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HFC6969240.1"
                     /translation="MAIERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTL
                     KEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGT
                     IRADFATSVSINAVHGSDSVENAALEIAYFFSQTEICPR"
     gene            15299..16393
                     /gene="rlmN"
                     /locus_tag="ACFOCN_000015"
     CDS             15299..16393
                     /gene="rlmN"
                     /locus_tag="ACFOCN_000015"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HFC6969241.1"
                     /translation="MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNE
                     MTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGT
                     LCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVM
                     MGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVS
                     LHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHAR
                     ELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDI
                     DAACGQLAGQVQDKTRRQQKWQQILIGQQG"
     gene            16396..17157
                     /gene="pilW"
                     /locus_tag="ACFOCN_000016"
     CDS             16396..17157
                     /gene="pilW"
                     /locus_tag="ACFOCN_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HFC6969242.1"
                     /translation="MPFKPSKRISLLLVLALGACSTSYRPSRAEKANQVSNIKTQLAM
                     EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD
                     SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA
                     EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK
                     IAKALGNAQAAYEYEAQLQANFPYSEELQTVLIGQ"
     gene            17173..18438
                     /gene="ispG"
                     /locus_tag="ACFOCN_000017"
                     /gene_synonym="gcpE"
     CDS             17173..18438
                     /gene="ispG"
                     /locus_tag="ACFOCN_000017"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HFC6969243.1"
                     /translation="MNTLQRRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQ
                     IKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPE
                     CGKALSKYRINPGNVGKGVKGDEKFAFMIRTAAENDKAVRIGVNWGSLDQSLAKRMMD
                     ANLASSAPKPPEEVTKEALIVSALESAEKAVLLGLPEDKIILSCKVSAVQDLIQVYRE
                     LGSRCAYPLHLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGSPRTQEV
                     VVGQEILQTMGLRSFTPMVTACPGCGRTTSTVFQELAQDVQNYLRQKMSIWRTLYPGV
                     ESLNVAVMGCVVNGPGESKLADIGISLPGTGETPVAPVYVDGERKITLKGDNIATEFL
                     AIVEEYVKTNYGENGSKRNQNKIIPIQSL"
     gene            complement(18495..19109)
                     /gene="clpP"
                     /locus_tag="ACFOCN_000018"
     CDS             complement(18495..19109)
                     /gene="clpP"
                     /locus_tag="ACFOCN_000018"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HFC6969244.1"
                     /translation="MSFDNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDES
                     ANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAAS
                     MGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLM
                     AKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQILENRASLQF"
     gene            complement(19205..20515)
                     /gene="tig"
                     /locus_tag="ACFOCN_000019"
     CDS             complement(19205..20515)
                     /gene="tig"
                     /locus_tag="ACFOCN_000019"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HFC6969245.1"
                     /translation="MSVTVETLENLERKVVLSLPWSEINAETDKKLKQTQRRAKIDGF
                     RPGKAPLKMIAQMYGASAQNDVINELVQRRFHDVAVAQELKVAGFPRFEGVEEQDDKE
                     SFKVAAIFEVFPEVVIGDLSAQEVEKVTASVGDAEVDQTVEILRKQRTRFNHVEREAR
                     NSDRVIIDFEGKIDGEPFAGGASKNYAFVLGAGQMLPEFEAGVVGMKAGESKDVTVNF
                     PEEYHGKDVAGKTAVFTITLNNVSEATLPEVDADFAKALGIADGDVAKMREEVQKNVS
                     REVERRVNEQTKESVMNALLKAVELKAPVALVNEEAARLANEMKQNFVNQGMADAANL
                     DLPLDIFKEQAERRVSLGLILAKLVDENKLEPTEEQVKAVVANFAESYEDPQEVIDWY
                     YAEPSRLQAPTSLAIESNVVDFVLGKAKVNEKALSFDEVMGAQA"
     gene            complement(20724..23162)
                     /locus_tag="ACFOCN_000020"
     CDS             complement(20724..23162)
                     /locus_tag="ACFOCN_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6969246.1"
                     /translation="MTEKSHKKTAKGRAGSPSPTSARNKKADNGARGNKVSERLKAVK
                     ELQKTETKKARPEHVVNLIGDALWLMGLAATLYLAISLISFDMGDPSWSHSSPVVEDV
                     ANWGGLFGAYVADVGYYLFGWSFWWWIAAACVMLYKNFRLHAKQTENEAYNHKIAAAA
                     LFVLTVFSPVLEYFVLGGKYADSLPVGAGGMVGIRVGAVFAWLLGKSGSLLIILVVLL
                     LSLSLLVQISWLEFLNGAGRAVQNRLSALSGKVMALGKRRPNTKTDGVDTQNTRRMVK
                     EAKNITAKPVALPEGSSSNRKSVAVSVAPSPKIQVSLFEDDEPRQAGEYHKPTLNLLR
                     IPDSEPVSINPAELERTAELIESKLAEFGIGVQVVSATSGPVITRYEIEPAQGVKGSQ
                     IVALSKDLARSMSLQSVRIVETIAGKNTMGIELPNDKRQDVMLSEILSSPVFAEAKSK
                     LTVALGKDIAGTPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSMLFKATPDEVRFIM
                     IDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHAGVRNLEGFN
                     QKVEAAKAAGKPLLNPFSLNPDSPEPLEKLPMIVVVIDELADLMMTERKAVEQQIARL
                     AQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELL
                     KYGDSLFLQPGSAEPTRLQGAFVSDDEVHQVVNYVKSQAPADYIEGLLSGEAALETAN
                     IVNPNADSDELFDQAVAYVLESKKTSISSLQRQLRIGYNRAANLMEALENAGVVSPTD
                     LNGSRKILAHKDHL"
     gene            23385..24596
                     /locus_tag="ACFOCN_000021"
     CDS             23385..24596
                     /locus_tag="ACFOCN_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease family protein"
                     /protein_id="HFC6969247.1"
                     /translation="MNQLKLAVSGAQILFVAFGAMVLVPLLTGLNPALALLGAGLGTL
                     LFQITTKRKVPIFLGSSFAFIAPIIYSVGEWGLPSTMFGLFAAGFMYFVFAALIRWRG
                     LAAVHKLLPPVVIGPVIMVIGLSVAVAASSMAMGQADGKQVIDYTDSLILSGFTFAVT
                     AIVSVFGSRMMKLIPILIGVASGYVLALLMGLVDTASIAHAPWFAVPHFETPQVNWQA
                     ALFMLPVAVAPAIEHIGGIMAIGNVTGKDYTKDPGLDKTLAGDGLGVCVAGLIGGPPV
                     TTYGEVTGAVMITKNSNPVIMTWAAVFAVCMAFFGKFNAFLASIPMPVMGGIMLLLFG
                     TIASLGVKTLIDAKVDLMLPKNLVIVSSVLTTGIGGMTLKLGSFSFAGVGLCAVLAIM
                     LNSLLPDPKES"
     gene            complement(24648..25130)
                     /locus_tag="ACFOCN_000022"
     CDS             complement(24648..25130)
                     /locus_tag="ACFOCN_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HFC6969248.1"
                     /translation="MMKKILAVSALCLMTAAARAADTYGYLAVWQNPQNADDVLQVKT
                     TKEDSTKSEAFAELEAFCKGQDTLAGIAEDEPTGCRSVVSLNNTCVALAYPKALGAMR
                     VENAVVITSPRFTSVHQVALNQCIKKYGVQGQCGLETVYCTSFSYYGGTVRSLIQNLK
                     "
     gene            25713..26459
                     /gene="pssA"
                     /locus_tag="ACFOCN_000023"
     CDS             25713..26459
                     /gene="pssA"
                     /locus_tag="ACFOCN_000023"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HFC6969249.1"
                     /translation="METPTNTPQRSLRQNSIYLLPNSFTIAALFSAFYAITQSMHGRY
                     ETAAIAVFISMLLDGMDGRVARLTNSQSAFGEQLDSLADMVSFGVAPALIAYKWQLWQ
                     FGKIGYSVAFIYCACAALRLALFNTLIGKVDKRWFIGVPSPTAAALIVGLIWVNHSVE
                     KFPAVHWWALGITLFAGLSMIVQIPFWSFKEINIRRQVPFVGMLLAVLLLLLVTWEPS
                     LVLFLFFLGYSLSGYIMAARRFWKKYRKAD"
     gene            26460..27266
                     /locus_tag="ACFOCN_000024"
     CDS             26460..27266
                     /locus_tag="ACFOCN_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6969250.1"
                     /translation="MWHWDIILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQG
                     LAQHPYAQHLAVGTSFAVMVFTAFSSMLGQHKKRAVDWKTVFAMMPGMIFGVFTGALS
                     AKYIPAFGFQIFFILFLTAVAFKTLHTGRQTASRPLPKLPGLTAVSTLFGTMSSWVGI
                     GGGSLSVPFLIHCGFPAHKAIGTSSGLAWPIALSGAISYLLNGLNIAGLPEGSLGFLY
                     LPAVAVLSAATIAFAPLGVKTAHKLSSAKLKKSFGIMLLLIAGKMLYNLL"
     gene            complement(27933..28040)
                     /locus_tag="ACFOCN_000025"
     CDS             complement(27933..28040)
                     /locus_tag="ACFOCN_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HFC6969251.1"
                     /translation="MPSETLPIVGMWFQTVFVLFSVYSAKVGMVVFIVD"
     gene            complement(28054..28506)
                     /gene="rplI"
                     /locus_tag="ACFOCN_000026"
     CDS             complement(28054..28506)
                     /gene="rplI"
                     /locus_tag="ACFOCN_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HFC6969252.1"
                     /translation="MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANM
                     KEFEVRRAELEAKQAEILADARVRQEKLDGQTVTVAQKAGVDGRLFGSVTNADIAAAI
                     VAAGIEAVKANVRLPNGPLKAVGEYEVEVALHTDAVAKITVAVVAATE"
     gene            complement(28523..28753)
                     /gene="rpsR"
                     /locus_tag="ACFOCN_000027"
     CDS             complement(28523..28753)
                     /gene="rpsR"
                     /locus_tag="ACFOCN_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009120066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HFC6969253.1"
                     /translation="MARQSFKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPAR
                     ITGTKAFYQRQLAVAVKRARFLALLPYTDQHK"
     gene            complement(28760..29062)
                     /gene="priB"
                     /locus_tag="ACFOCN_000028"
     CDS             complement(28760..29062)
                     /gene="priB"
                     /locus_tag="ACFOCN_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030894 - replisome [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HFC6969254.1"
                     /translation="MGFNNLVSLAALIEKVFPIRYTPAGIPVLDIILKHESWQEENGQ
                     QCLVQLEIPARILGRQAEEWQYRQGVYVHVEGFLAQKSRRSLMPMLRIQNIQEYKG"
     gene            complement(29063..29431)
                     /gene="rpsF"
                     /locus_tag="ACFOCN_000029"
     CDS             complement(29063..29431)
                     /gene="rpsF"
                     /locus_tag="ACFOCN_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HFC6969255.1"
                     /translation="MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGR
                     RQLAYPINKIHKAHYVLMNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASPM
                     LGGEKAKNLLSGASEEAVAQ"
     gene            complement(29586..30536)
                     /gene="trxB"
                     /locus_tag="ACFOCN_000030"
     CDS             complement(29586..30536)
                     /gene="trxB"
                     /locus_tag="ACFOCN_000030"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HFC6969256.1"
                     /translation="MSQHRKLIILGSGPAGYTAAVYAARANLNPVIITGIAQGGQLMT
                     TTEVDNWPADADGVQGPELMARFLAHAERFGTEIIFDQINAVDLQKRPFTLKGDMGEY
                     TCDALIVATGASAKYLGLPSEEAFAGKGVSACATCDGFFYKNQDVAVVGGGNTAVEEA
                     LYLANIAKTVTLIHRRSEFRAEKIMIDKLMKRVEEGKIILKLESNLQEVLGDDRGVNG
                     ALLKNNDGSEQQIAVSGIFIAIGHKPNTDIFKGQLEMDEAGYLKTKGGTADNVGATNI
                     EGVWAAGDVKDHTYRQAITSAASGCQAALDAERWLGSQNI"
     gene            30675..32837
                     /locus_tag="ACFOCN_000031"
     CDS             30675..32837
                     /locus_tag="ACFOCN_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6969257.1"
                     /translation="MQQKIRFQIEGMTCQACASRIEKVLNKKDFVESAGVNFASEEAQ
                     VVFDDSKTSVADIAKIIEKTGYGAKEKTEDTLPQAEAEHHIGWRLWLLSAINIPFLVG
                     MAGMMIGRHDWMIPPLWQFALASIVQLWLAIPFYKSAWASIKGGLANMDVLVTIGTVS
                     IYLYSVYMLFFSPHAAHGMAHVYFEAGVMVIGFVSLGKFLEHRTKKSSLNSLGLLLKL
                     TPTQVNVQRDGEWKQLPIDQVQIGDLIRANHGERIAADGVIESGSGWADESHLTGESN
                     PEEKKAGGKVLAGALMTEGSVVYRAAQLGSQTLLGDMMNALSEAQGSKAPIARVADKA
                     AAVFVPAVVGIALLTFIVTWLIKGDWTVALMHAVAVLVIACPCALGLATPAAIMVGMG
                     KAVKHGIWFKDAAAMEEAAHVDAVVLDKTGTLTEGRPQVAAVYCVPDSGFDKDDLYRI
                     AAAVEQNAAHPLARAIVSATQARGLEIPAAQNAQTVVGAGIAAEVEGAGLVKAGKAEF
                     AELTLPEFSDGVWDIASIVAVSVDNKPIGAFALADALKADTAEAIGRLKKHNIDVYIM
                     SGDNQGTVEYVAQQLGIAHAFGNMSPRDKAAEVQKLKAAGKTVAMVGDGINDAPALAA
                     ANVSFAMKGGADVAEHTASATLMQHSVNQLADALLVSQATLKNIKQNLFFAFFYNILG
                     IPLAALGFLNPVIAGAAMAASSVSVLSNALRLKRVKID"
     gene            32892..34778
                     /gene="uvrC"
                     /locus_tag="ACFOCN_000032"
     CDS             32892..34778
                     /gene="uvrC"
                     /locus_tag="ACFOCN_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HFC6969258.1"
                     /translation="MPSEAVFQMIDMNTENRSPEQFDIPLFLKNLPKLPGVYRFFDEG
                     GKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVRHIETTITRSESEALILENNFI
                     KALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGTLKKPNQYFGPYPNSNAVRDSIQ
                     VLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRDSVRQAATFLNGK
                     TDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLA
                     LAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPDPNGQDYAEAFVAQHYLGKSKPDI
                     IISNFSVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQ
                     QHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITT
                     AKPGDDYAAMREVLTRRYGKMQEAEANGETVKWPDAVLIDGGKGQIGVAVSVWEELGL
                     HIPLVGIAKGPERKAGMEELILPFTGEVFRLPPHSPALHLLQTVRDESHRFAITGHRK
                     KRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEKVEGISKALAETIY
                     NHLH"
     gene            34895..36299
                     /locus_tag="ACFOCN_000033"
                     /pseudo
     CDS             34895..36299
                     /locus_tag="ACFOCN_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
     gene            36421..37137
                     /gene="trmB"
                     /locus_tag="ACFOCN_000034"
     CDS             36421..37137
                     /gene="trmB"
                     /locus_tag="ACFOCN_000034"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HFC6969259.1"
                     /translation="MTDTAENQTQNNWQAEHPRSIRSFVLRQSHMTAAQQRAIDTLWD
                     SFGIDYQATPADLDANFGSNRPKILEIGFGMGTATAEIARRLPETDFLAIDVHGPGVG
                     NLLKLINENHLENIRVMRHDAVEVIENMLQDGSLDGIHIFFPDPWHKKRHHKRRLIQA
                     PFIAKLLPKLKTGGYIHLATDWEEYARQMLEVLSSFDSLQNTAADYAPTPDYRPETKF
                     EARGKRLGHGVWDLVFKRMG"
     gene            complement(37318..37605)
                     /locus_tag="ACFOCN_000035"
     CDS             complement(37318..37605)
                     /locus_tag="ACFOCN_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969260.1"
                     /translation="MTYSFRVENINDISDIPENHLEIVRAALPSNRSNALSREPDGAQ
                     AVFVYEIDGEFRAKLFDRIKDTDSYLQATEDNYSNDPRSIGVVYVLEQQQG"
     gene            complement(37717..39744)
                     /gene="uvrB"
                     /locus_tag="ACFOCN_000036"
     CDS             complement(37717..39744)
                     /gene="uvrB"
                     /locus_tag="ACFOCN_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HFC6969261.1"
                     /translation="MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLL
                     GVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYY
                     QPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
                     QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENAL
                     RISLFDDEIDRLDMFDPLSGSLIQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRER
                     IDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDY
                     LPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVM
                     PQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQK
                     GERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGI
                     NLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSM
                     KAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRRQGKNKVKV
                     SEIHNEEDAVKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGSE"
     gene            complement(40073..41557)
                     /locus_tag="ACFOCN_000037"
     CDS             complement(40073..41557)
                     /locus_tag="ACFOCN_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HFC6969262.1"
                     /translation="MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQ
                     SIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSG
                     EFGGLGMEIGQEDGFVKVVSPIEDTPAEQAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
                     RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVE
                     SVNTAAKELVKENKGKPLKGLVLDLRDDPGGLLNGAVGVSAAFLPPEAVVVSTKGRDG
                     KDRMVLKAVPEDYVYGMGGDPLAGIPAELKTVPMTVLINSGSASASEIVAGALQDHKR
                     AVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERI
                     FESREADLVGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPN
                     PAKDDQLRKALDLVKSPEQWQKSLGLAAKKPVSNKDKKDKKDKK"
     gene            complement(41684..43489)
                     /locus_tag="ACFOCN_000038"
     CDS             complement(41684..43489)
                     /locus_tag="ACFOCN_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFC6969263.1"
                     /translation="MRYKPLLLALMLVFSTPAVAAHDAAHNRSAEVKKQTKNKKEQPE
                     AAEGKKEKGKNGAVKDKKTGGKEAAKEGKESKKTAKNRKEAEKEATSRQSVRKGHEGD
                     KKSKAEHKKAHGKPVSGSKEKNAKTQPENKQGKKEAKGQGNPRKGGKAEKDTVSANKK
                     VRSDKNGKAVKQDKKYREEKNAKTDSDELKAAVAAATNDVENKKALLKQSEGMLLHVS
                     NSLKQLQEERIRQERIRQERIRQARGNLASVNRKQREAWDKFQKLNTELNRLKTEVAA
                     TKAQISRFVSGNYKNSQPNAVALFLKNAEPGQKNRFLRYTRYVNASNREVVKDLEKQQ
                     KALAVQEQKINNELARLKKIQANVQSLLKKQGVTDAAEQTESRRQNAKIAKDARKLLE
                     QKGNEQQLNKLLSNLEKKKAEHRIQDAEAKRKLAEARLAAAEKARKEAAQQKAEARRA
                     EMSNLTAEDRNIQAPSVMGIGSADGFSRMQGRLKKPVDGVPTGLFGQNRSGGDVWKGV
                     FYSTAPATVESIAPGTVSYADELDGYGKVVVVDHGENYISIYAGLSEISVGKGYMVAA
                     GSKIGSSGSLPDGEEGLYLQIRYQGQVLNPSSWIR"
     gene            43817..44377
                     /locus_tag="ACFOCN_000039"
     CDS             43817..44377
                     /locus_tag="ACFOCN_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HFC6969264.1"
                     /translation="MNRLLLLSAAVLLTACGSGETDKIGRASTVFNILGKNDRIEVEG
                     FDDPDVQGVACYISYAKKGGLKEMVNLEEDASDASVSCVQTASSISFDETAVRKPKEV
                     FKHGASFAFKSRQIVRYYDPKRKTFAYLVYSDKIIQGSPKNSLSAVSCFGGGIPQTDG
                     VQADTSGNLLAGACMISNPIENPDKR"
     gene            44379..44927
                     /locus_tag="ACFOCN_000040"
     CDS             44379..44927
                     /locus_tag="ACFOCN_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HFC6969265.1"
                     /translation="MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSP
                     ITMDMIFSATGKNIPMRMQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTS
                     SRDVIENISREGAVDKALISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHR
                     YAAAFAKLGIDPLALFSGAGHA"
     gene            44920..45375
                     /gene="ruvX"
                     /locus_tag="ACFOCN_000041"
     CDS             44920..45375
                     /gene="ruvX"
                     /locus_tag="ACFOCN_000041"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HFC6969266.1"
                     /translation="MHKIPKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDE
                     KFAAIAKLVQEWQPRYFVVGLPVHTDGTKHEMTHLSRKFGRRLNGRFNLPVYWVDERL
                     SSVYAESLLSEAQVFGKKRKSVLDQVAAQAILHGFFEGGPAECFNGREG"
     gene            complement(45385..46041)
                     /locus_tag="ACFOCN_000042"
     CDS             complement(45385..46041)
                     /locus_tag="ACFOCN_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HFC6969267.1"
                     /translation="MASVFLEGEAVEVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKP
                     SGSILNSGGTILLPEFSRDVQFECELVLLVGKDSDGTGEGKDILGCVAGYGVGLDLTA
                     RDIQCRLKEKGLPWLKAKGFRHSACVSDFAAAGRIGNPENVLFSLKQNGVLKQRGDTG
                     LMIYPIREILHKLAADYGLGKGDLVFTGTPSGVGAIGAGDNLALELDGLVRASFTVGC
                     "
     gene            complement(46104..47816)
                     /locus_tag="ACFOCN_000043"
     CDS             complement(46104..47816)
                     /locus_tag="ACFOCN_000043"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HFC6969268.1"
                     /translation="MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMP
                     MGLRVLRKVENVVREEMARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDR
                     DFCMGPTCEEVIADIVRKEINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDA
                     YSFHADYASLQTTYDAMYDAYCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE
                     DVIAYSDTSDYAANIELAPTLPLKGERTAAQAELTKVHTPNVKTIESLVEFLNIPVEQ
                     TLKSIVVESENEGEIVLLLLRGDHEFNDIKAEKLAGVKSPLTMASSAAIVEQFGANGG
                     SLGPVGFKGKVYADFATEKGADWVIGANEDGYHYTSFNFGRDAAEPEFVDLRNVVEGD
                     ESPDGQGRLKLARGIEVGHVFQLRDKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVV
                     AAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLD
                     DRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTA
                     LLNG"
     gene            48510..51173
                     /gene="aceE"
                     /locus_tag="ACFOCN_000044"
     CDS             48510..51173
                     /gene="aceE"
                     /locus_tag="ACFOCN_000044"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HFC6969269.1"
                     /translation="MSTQLHDVDPIETQEWLDALSSVLEYEGGERAQYLLENLVKYCR
                     DKGVRMPHGTTTPYLNTVSVENEKGIPGDQNIEHRIRAFVRWNAAAIVLRAGKKDLEL
                     GGHIASFQSAATMYEVGFNHFWKAKGEGEEGDLVFFQGHVAPGIYARAFVEGRLTEDQ
                     LNNFRQEVDGHGLPSYPHPHLLPDFWQFPTVSMGLGPIMAIYQARFLKYLESRGLAKT
                     KGRKVWCFCGDGEMDEPESQGAIALAAREGLDNLIFVINCNLQRLDGPVRGNGKIIQE
                     LEGNFAGAGWNVVKVIWGRRWDRLLAKDKDGILRQRMEECLDGDYQTYKSKDGAYVRE
                     HFFNTPELKALVADMTDEQLWALNRGGHDPQKVYNAYDRAANHADGKPTVILAKTIKG
                     YGMGASGEGQNVAHQAKKMDKASLKQFRDRFDIPVTDEQIESGDLPYLTFAPDTEEYK
                     YLHARRDALGGYLPQRKPTQEVLEVPELSAFDAQLKSSGEREFSTTMAFVRILSTLLK
                     DKKIGKRVVPIVPDESRTFGMEGMFRQYGIWNPKGQQYTPQDKDQLMFYKESVDGQIL
                     QEGINEPGAMADWIAAATSYANSNFAMIPFYIYYSMFGFQRIGDLAWAAGDMHARGFL
                     LGGTAGRTTLNGEGLQHEDGHSHIQADLIPNCVSYDPTFQYEVAVIVQDGLRRMYANN
                     EDVFYYITLMNENYTHPDMPEGAEQDILKGMYLLKAGGKGDKKVQLMGSGTILQEVIA
                     GAELLKADFGVEADIWSCPSFNLLHRDAVEVERFNRLHPLEAEKVPFVTSKLQGHDGP
                     VIAATDYIRSYADRIRAYIPNDYHVLGTDGFGRSDSRANLRRFFEVDRYNVAVAALSA
                     LAEQGKVSKETVQQAIEKYGIKADSAPSWKR"
     gene            51323..52924
                     /gene="aceF"
                     /locus_tag="ACFOCN_000045"
     CDS             51323..52924
                     /gene="aceF"
                     /locus_tag="ACFOCN_000045"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HFC6969270.1"
                     /translation="MSIVEIKVPDIGGHENVDIIAVEVKAGDTIAVDDTLITLETDKA
                     TMDVPADAAGVVKEVKVKVGDKISEGGVILTVETGAAAAEAAPAAAEAQPAPAAAPVA
                     AGGATVQVAVPDIGGHTDVDVIAVEIKVGDTVAEDDTLITLETDKATMDVPCTAAGVV
                     KAVFLKVGDKVSEGSAIIEVETAGSAAAAPAPAAQAAAPAPAAAPVPAAAAAPAPSAP
                     AAAKIDEAAFAKAHAGPSARKLARELGVDLGQVKGTGLKGRIMGDDIKAFVKSVMQGG
                     AAKPAAASASLGGGLDLLPWPKVDFSKFGNVEVKELSRIKKISGQNLSRNWVVIPHVT
                     VHEEADMTELEEFRKQLNKEWEREGVKLSPLAFIIKASVSALKAFPEFNASLDGDNLV
                     LKNYFNIGFAADTPNGLVVPVIKDVDQKGLKQISQELTELSKKAREGKLKPQEMQGAC
                     FTISSLGGIGGTGFTPIVNAPEVAILGVCKSQIKPVWNGKEFAPRLMCPLSLSFDHRV
                     IDGAAGMRFTVFLAKLLKDFRRITL"
     gene            53001..54788
                     /gene="lpdA"
                     /locus_tag="ACFOCN_000046"
     CDS             53001..54788
                     /gene="lpdA"
                     /locus_tag="ACFOCN_000046"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6969271.1"
                     /translation="MSLVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKA
                     TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGAAASPKAEAPVAAPAQEAPKAA
                     APAPQAAQFGGSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV
                     GCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKNGVVSRLTGGLAGMAK
                     GRKVDVIQGDGQFLDSHHLEVSLTAGDAYELAAPTGEKKIVAFKNCIIAAGSRVTKLP
                     FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ
                     GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV
                     AAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHE
                     GHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASGRKITKANFPWAASG
                     RAIANGCDNGFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIH
                     PHPTLGESIGMAAEVALGTCTDLPPQKKK"
BASE COUNT        13426 a        15092 c        13420 g        12953 t
ORIGIN      
        1 atccgcaaaa gcgaatcata ctgccacatt ccggcaaccg gtttcagaca gcgatatccg
       61 catcgtcggc gacaacggca cggatgcttt cttcgatttt atcttttaaa gcataacggt
      121 cttcgctttc cgccgcatcc gccacgcaaa cgaaatcgac ttttatcgtt aattttttca
      181 tagacacaat gcgccacagg caggtcggca aaccgacatc ggcatatgag ggacgagccg
      241 tcctttttcc cgtttcgtca taataacgca gcgcgaccgc caaaaccttt gcccccgcat
      301 caatggcgga ttggaacagc gcggctttga acggcaggag ccccagtccg gaggaagtcc
      361 gcgcttcggg gaaaaaactg acgttttgac cgcgttgcaa ggtttcgtag acggcgcggt
      421 taatcggttc gatgtcgcgc cgcgaattgc ggttgatgaa caccgttccc gcgttctgcc
      481 ccatcttgcc caataccggc cagcttttga tttcctgctt ggcgataaag ctgctcggat
      541 aaaccgcgct catcgcgaaa atatccagcc aggacacgtg gttggcggca accaagacac
      601 cgttcggatg ttcgggtgcg ggcctgccca cctccaatcc gatatccaaa gccgtcagag
      661 cccccctgcc caactcgatt accgcccgat tgcgcgactc ggggcagccg ccgtcaatac
      721 cgcgcaggtt tttgccggtt ttgaatagcc agaccgtcaa gcggcacaag cggcgcagac
      781 gtgtaaaaaa tgaagcttta tttgaagaca tgaacaattc tttcccgata atcggtgttt
      841 gttgttgaaa cgttcggacg gcataccgat aaaatgccgt ctgaaaccgt tttccgccct
      901 atttctgaca attcgggcag taaaacgtgc cgcgctgccc caaagtttct ttcacaacca
      961 aaccgccgca ctgggggcac ggctgattgt gccgcccgta caccgtatat tcctgttgga
     1021 agtagccact tttgccgtcg ctgtccacaa aatccctcaa ggtactgccg cccgtttcaa
     1081 tggcgcgccg caacaccgct ttgacggttt caaccaaaag cgcacactct ttctttttca
     1141 gacggttggc aggacggtgg ggcgaaatgc ccgctctgaa caggctctcg ttggcataaa
     1201 tgttgcccac accgaccacg accgcattgt ccatcagggc aagtttgacc gcgcgtttct
     1261 gcgccttcag cctcacatac agataatccg cacaaaatgc ctccgacaaa ggctccggcc
     1321 ccagtttttc caacagcgga tgatgttctt cgattccctc ataccaaagt atcgcgccga
     1381 actttctcgg atcgcggtaa cgcatgaccg tgccgtctga aaacacaata tcgacgtgat
     1441 cgtgtctgtc cggcctgccg atacgtccgt ccgacggcgt aaaaatccgc aagctgcccg
     1501 acatccccaa gtgaatcagc aaaatccccg tttggaaacg gacaatcaga tatttggcac
     1561 gcctgccgca ggacaaaacc tgccgaccgg acaaaatctc ccccaaatcg ggattgatct
     1621 gccagcgcag cttcaattgg cgcaatacca cggcttccac cgttttccct tcaatatgcg
     1681 gcgcgatgcc gcgcaacgtc gtttccactt ccggcaattc cggcataacc cctcccgaca
     1741 tttcttctga cagatgccgt ctgaaagacg gctgtcccta atccgcaatc cttgccgcac
     1801 ccgccgcaag ggctttgccg cccaaatacc cgtcccacgc gggcaggggc gttacgcccg
     1861 ccgccctttt gaccaaaacc aaaccgtaca ctgcggcaca ctgcggccac caacggtcgc
     1921 ccgccttttc cataaaccgc caaaagcgta tttgcccgag cgacgaaacg ggcggcagat
     1981 acaccataaa tttcccaaat tcaatatcga aaccgacatc cgcaagctgc cttttcaact
     2041 cgggcagcgg cagacagaag cgtttttccg gcaggcgttc gccgtcaaac caacggctga
     2101 atccccagag cgaatacgga ttgaaacccg tcagcatcaa acgtccggac ggtttcaata
     2161 tccggtgcgc ctcggacagg atttgcgaag gaacaccgcc ttcaagcgta tgcggaaaaa
     2221 gcagcatatc cgcagaaaca tccgccaaag ccatattttc cgccgacatc gacatatctc
     2281 gcggcacaca gacaacatct tcagacaggc tcagccacgg accgcccacc tgaaccgcac
     2341 acattcccga aaaacggtat gaatctagat accgcccgaa gaaatcctgt tccaattttg
     2401 caacataccg ccccatcgcc gtatcttcaa accatgaatc catattgcgt ccgtttcaaa
     2461 cagattgcct gccgatattc tattccaaac aggatttctg tcaaaaaaca catcggccgc
     2521 ccatttccga atccgcataa agttcctgta aaacttgacg ctttttcagt caaacagtac
     2581 catcggacga taaaatatgt ttattccgcc gaatataaat catgtccaaa ctcaaaacca
     2641 tcgctctgac cgcatcaggt ctgtccgttt gtccgggttt cctatacgcc caaaacacct
     2701 catcacacca aatcggtttg gcgattatgc gcttaaactc ttcaatactc gacctgcccc
     2761 cgacaaaaca atatttccaa tccggcagcc tgtggagcga gctgcgccaa ggcttccgga
     2821 tgggcgaagt caatcccgaa ctggtacgcc gccacgaaag caaattcatc gcaagccaca
     2881 gctatttcaa cagggtcatc aaccggagta gaccctatat gtaccatatc gccaacgaag
     2941 tcaaaaaacg caatatgccc gccgaagccg ccctgcttcc cttcatcgaa agcgcgttcg
     3001 tcaccaaagc caaatcacac gtcggcgcat caggattatg gcagtttatg cccgctaccg
     3061 gcaggcatta cggcctggaa aaaacaccgg tttacgacgg caggcacgac gtttacgccg
     3121 ccaccgatgc cgcactcaac tatctgcaat acctctatgg actgttcggc gactggccgc
     3181 ttgcctttgc cgcctacaac tggggtgaag gcaacgtcgg acgcgccatc aaccgcgccc
     3241 gcgcccaagg gctcgaaccg acctacgaaa acctgcgtat gcccaacgaa acgcgcaact
     3301 atgtccccaa gctgctcgcc gtgcgcaaca ttattgccac tccccaatct ttcggcatga
     3361 atatcagcga catagacaac aaaccgtatt ttcaggcagt cgaaccggat cgtccgctcg
     3421 acaacgaagc catcgcccgg cttgccggca tcacgcaaag cgagctgctc gccctaaacc
     3481 ccgcattcaa cgtccccgcg tttatcccca aaagcaaacg caaactgctg cttcctgtcg
     3541 cgtccgtaca aaccttccaa agcaactacc tcaacgccgc acccgacagc ctgttttcat
     3601 gggaagtcta tacgcctgcc gccaaaacca gcctgtccga catctcgacg gcaaccggca
     3661 tgagcattgc cgacatcaaa cgcctcaaca acctgaacgg caaccttgtc aacgcaggac
     3721 gcagcatcct tgtcgccaag aacggcaaaa cccttcagac ggcatcggaa tccgtcgttt
     3781 ccatcgacat cgacaatacg cccgacacct accgttccaa tatgccggca ggcacggtga
     3841 acgtcggcat tgcccgaatc cgacccgccg ccgcacagac agcggacatt accgtcgcac
     3901 ctttgccgca gaaaaccgtc cgtacggaac ccgatcccct tgtccgtatt gccgaacctg
     3961 cccttgcgac agccgcagcg caacctcaaa ccgaaaaaca gaccgccatg ccgtctgaaa
     4021 cccaaaccgc aacactcgcg cagatcatcc cccaaaacga catgcaggcg gcagatgaac
     4081 tcatgcagct tgttgcccga aacaacctgc gccgacaggc tgaagaaacc atctccgccg
     4141 tcatcggcac gcctgacaca gttgccgaac acaacatttc ctcatctccg caacataccg
     4201 ttgccgccga cggcaaacgc cgggcacgtt tggaaacgcg cgtagccaaa gctgccgacg
     4261 gcgaagccga aatctccccg ctccatgcca gcatccaccg cgttgtagaa ggcgacaccc
     4321 tgttcaacat tgccaaacgc tacaacgtca gcgtagccga cctgattgtc gccaacaaca
     4381 tcaaaggcaa caccatccaa aaaggacagg tactccgcct ggcgcaggca gcccctgccc
     4441 aaacccgtat tgaaaaagta tcctacaccg cgcgcaaagg cgacaccttc aaaagtatcg
     4501 ccgcgcgctt caatatccat atcgacgaca tccgccggct caatcccaac ctgaacacca
     4561 tcaatccggg acagagggtc aaactgattg gaagctgatt cggatacggc acatgacagg
     4621 actttctcag tcctgtcttt ttcatcccac atttcccata ccatcatgaa actcatcaaa
     4681 tacctgcaat atcaaggcat aggaagccgc aagcagtgcc aatggctgat tgccggcggt
     4741 tatgttttca tcaacggaac ctgcatggac gacaccgatg cagacatcga ttcctcatct
     4801 gtcgaaacgt tggatattga cggggaagca gtaaccgtcg ttcccgaacc ctatttctac
     4861 atcatgctca acaagcctga agattacgaa acttcgcaca aacccaagca ctaccgcagc
     4921 gtattcagcc tgttccccga caatatgcgg aacatcgata tgcaggcggt cggcaggctg
     4981 gatgcggata cgaccggcgt attgctgatt accaacgacg gcaaactgaa ccacaacctg
     5041 acttcgccga gcagaaaaat tcccaagcta tacgaagtaa cgctcaaaca ccccacagga
     5101 gaaacgctct gcgaaacctt gaaaaacggc gtgctgctcc acgacgaaaa cgaaaccgtt
     5161 tgtgccgccg atgccgtttt ggaaaacccg accaccctgc tgctgaccat taccgaagga
     5221 aaataccacc aagtcaaacg catgatcgcc gccgtcggca accgcgtgca acaccttcat
     5281 cgtcggcgat tcgcacattt ggaaacagaa aacctgaaac ccggcgaatg gaaatttatc
     5341 gattgtccaa aattctgaaa caaaattcca taatttccct atattcaact atatgcttat
     5401 taaataagta gttttacaaa aattaactca aaaaaaaaca gttagcttgc gatataattc
     5461 gcttgtctga gtaacgcctg ttcaagcagg cttatgagta agacgttttc cccgtaatgt
     5521 gttttgccat ctatacttct cccccttgta tagatggttt ttttatcttc gtttactaca
     5581 catactacat atgttactga cgcagcattc ccgatcatat gacatatgaa attttatttc
     5641 accgtcccag tgtagaaaaa taaacgattc atctatctat aaaatctgat tcaatccttg
     5701 ttgatttatg caaatcagaa atatccacta taaaatataa ctctattagt gaaaataact
     5761 acacacttaa aaaacaatca gtcagttcct gttaaaaaac gcgtgtagaa tttccgcttt
     5821 atctcaatcg gacacggttt caatatgtct tccccttcaa ataccaatcg tcaaacctga
     5881 tccagccgat taacctatat cctgaccgtt gccggcgcga ctgtcggttt cggcgcgacg
     5941 tggcgtttcc cgtatttggt cggtgaaaac ggtggtggcg cgtatgtgtt tttattctgt
     6001 atcgcgatgc tggttatcgg cattccgatg attttggtgg aaaatgtcat cggacggcgc
     6061 aaaggcgtga acgcgctgga tgcgttcggc ggtccgatga acggcaaacc cattgctaaa
     6121 atttggaaac tggtcggctg gatggggctg ctcggcgcgt tcggcatcat ggcttattac
     6181 atggcactcg gcggctgggt aatcagctat atcgttaata ttattggagg aaatttgaat
     6241 atttccagcc ccatcgacgg tgtggttaca aaaggcttct ttgccgaaca cattgaaaca
     6301 gcccttggga aattgcgttt tatacgctgc tttttgtcgc cgtgaaccaa tggattttgg
     6361 tcaaaggcgt tatcggcggc attgaaaaag cggcaaaata gctgatgccg ctgctgtttt
     6421 tgttcctaat cgcgatggtc gtccgcaacg ttacccttcc gggcgcaatg gaaggggttg
     6481 ctttctatct gaaacctgat ttcagcaaga ttaccgccga actgttcgtc ttcgttttgg
     6541 ggcaggtatt ttttgccctg agcctgggtt tcggcgtgat gattaccttg tccagctatt
     6601 tggataaaaa cgaaaatcta gttcagacgg cagttatcac ggcaattacc aataccatca
     6661 tcgccatact tgcgggcttt atgattttcc cgtcgctctt cagcttcggc gttgcccccg
     6721 attccggccc gactttggtg ttccaaagct tgccgattgt gttctcacat atgtgggcgg
     6781 gatctgtgtt cgccgtgatt ttcttctcgc tgctcctgat tgccgcgttg acaacttcgc
     6841 tgaccattta tgaagtgttg attacgacca ttcaggaaaa aaccaaaatc cgccgtaccg
     6901 ccgcgattac gattgtattg gctgccatct tcattttcgg caacatcccg tccattttga
     6961 gctacggccc ttggaaagat gtttccatat ttggcaaaaa tatttttgac gcttttgact
     7021 acatcagcgg caacatcttg tttatgctga ccgcgctcgg ttccgcgctg tttgtcggtt
     7081 ttgtgatgaa ggacgaagcg aaggaagaat tgctttataa aggcaaccat acgacggtca
     7141 atatttggtt tgcctatgtg aaatacctcg tgccgttggt gattctgctg atttttatca
     7201 gcaacctgtt ctaatccgca gcaatcaatg ccgtctgaag gtcatacctc tttcagacgg
     7261 cattgcattg atgcccgcca caatacccgc aacgccggaa tccgaaccgg cttgccggct
     7321 tctgtcggat gtttccgggc aggcggcgtt ccgtctgctt agacaatcgt cctttaaaac
     7381 aggtagaatc cgccccaacg ggaaacacat ccttcagacg gcaaaaccca taccccaaac
     7441 catcaggaat cccccttatg aacagacaaa aagtcatcgc catcgacggc ccgggcgcat
     7501 cgggcaaagg cacggttgcc gcccgcgttg ccgccgcatt gggatacgat tatctcgata
     7561 ccggcgcact ctaccgcctg actgccctat atgcacaaaa acaaggcgtg ggatggcacg
     7621 atgaagaaaa cgtttccgaa ctggcaaaaa aactgcccgc cgtattttca ggcagccgca
     7681 tcctgctcgg cggcgaagac gtttcagacg gcatccggac agaagccatc ggcatgggcg
     7741 catccgcagt cgcacagttg cctaaagtcc gcgccgccct gctgcaacgc caacgcgatt
     7801 ttctgaccga aaaaggactg gttgccgacg gacgggacac cggatcggtc gtcttccccc
     7861 aagccgaact taaaatcttc ctgacggcag aatccaaaat ccgtgccgaa cgccgcgcca
     7921 aacaaatcgg catcccctgc gaaggtttgg cattcgagcg catcctgtcc gacatcgaag
     7981 ccagagacga ggcagaccga aaccgcaaag ttgcccccct gaaacaacag cccgatgccc
     8041 tgcttttgga cacaagccgc ctgactatag aagaaactgt aaaaaaagtg cttgattggt
     8101 atcgtgaagt ttaaattttc aggtataatc gcacaaatta cgtttcagac ggcataaaaa
     8161 tcccccatat gccgtctgaa accttatgta cccgtctgcc ctgccaagga cggcagatat
     8221 ccaccaaccc accccgcacc ccttggcggt gtaccgaaaa gagttatata tgtctatgga
     8281 aaattttgct cagctgttgg aagaaagctt taccctgcaa gaaatgaacc cgggtgaggt
     8341 gattaccgct gaagtagtgg caatcgacca aaacttcgtt accgtaaacg caggtctgaa
     8401 atcagaatcc ctgattgatg tagctgaatt caaaaacgct caaggcgaaa ttgaagttaa
     8461 agtcggcgac ttcgttaccg ttaccatcga atccgtcgaa aacggcttcg gcgaaaccaa
     8521 actgtcccgc gaaaaagcca aacgtgcagc cgattggatt gccctggaag aagccatgga
     8581 aaacggcgac atcctgtccg gcatcatcaa cggaaaagtc aaaggcggcc tgaccgttat
     8641 gattagcagc atccgcgcat tcctgccggg ttctttggtc gacgtacgtc ctgtaaaaga
     8701 cacttctcac ttcgaaggca aagagatcga attcaaagtg atcaaactgg acaaaaaacg
     8761 caacaacgtc gttgtttccc gccgcgccgt tctggaagcc actttgggtg aagaacgcaa
     8821 agccctgctg gaaaacctgc aagaaggctc cgtcatcaaa ggcatcgtta aaaacattac
     8881 cgattacggt gcattcgttg acttgggcgg catcgacggt ctgttgcaca tcaccgattt
     8941 ggcatggcgg cgcgtgaaac acccgagtga agtcttggaa gtcggtcagg aagttgaagc
     9001 caaagtattg aaattcgacc aagaaaaaca acgcgtttcc ttgggtatga aacaactggg
     9061 cgaagatcct tggagcggtc tgacccgccg ttatcctcaa ggcacccgcc tgttcggcaa
     9121 agtatccaac ctgaccgact acggcgcatt cgtcgaaatc gaacaaggca tcgaaggttt
     9181 ggtacacgtc tccgaaatgg actggaccaa caaaaacgta cacccgagca aagtcgtaca
     9241 actgggcgac gaagtcgaag tcatgatttt ggaaatcgac gaaggccgcc gccgtatctc
     9301 tttgggtatg aaacaatgcc aagccaatcc ttgggaagaa tttgccgcca accacaacaa
     9361 aggcgacaaa atctccggcg cggttaaatc cattaccgat ttcggcgtat tcgtcggcct
     9421 gcccggcggc atcgacggtt tggttcacct gtccgacctg tcctggaccg aatccggcga
     9481 agaagccgta cgcaaataca aaaaaggcga agaagtcgaa gccgtcgtat tggcaatcga
     9541 cgtggaaaaa gaacgcatct ccttgggtat caaacaactg gaaggcgatc cgttcggcaa
     9601 cttcatcagc gtgaacgaca aaggttcttt ggttaaaggt tccgtgaaat ctgttgacgc
     9661 caaaggtgct gttatcgccc tgtctgacga agtagaaggc tacctgcctg cttccgaatt
     9721 tgcagccgac cgcgttgaag atttgaccac caaactgaaa gaaggcgacg aagttgaagc
     9781 cgtcatcgtt accgttgacc gcaaaaaccg cagcatcaaa ctttccgtta aagccaaaga
     9841 tgccaaagaa agccgcgaag cactgaactc cgtcaatgcc gccgccaatg cgaatgccgg
     9901 caccaccagc ttgggcgacc tgctgaaagc caaactctcc ggcgaacaag aataaggttg
     9961 cagacatgac aaagtctgag ttaatggttc gtttggcaga agtgtttgcc gccaaaaacg
    10021 gcacgcatct tctggcaaaa gacgtagagt acagcgtaaa agtcttggtt gacaccatga
    10081 ctagatcgct tgcccgaggt caacgcatcg aaatccgcgg tttcggcagc ttcgatttga
    10141 accatcgtcc tgcccgcatc ggtcgcaatc ccaaaaccgg cgagcgtgtg gaagtacctg
    10201 aaaaacatgt accccacttc aagcccggta aagaattgcg cgagcgggtc gacttggctt
    10261 taaaagaaaa tgccaattaa accttagcat caaaacgccg ctgttacgcg gcgttttttc
    10321 tgtggtttaa cttcatccgc tgcttcaata ccttgagcca agcaagcaac ggattagagc
    10381 gtggattttt tatagtggat taacaaaaac cagtacggcg ttgcctcgcc ttagctcaaa
    10441 gagaacaatt ctctaaggtg ctgaagcacc aagtgaatcg attccgtact atttgcactg
    10501 tctgcggctt cgtcgccttg tcctgatttt tgttaatcca ctatatcatt gcttacaatc
    10561 cgctttttaa acaacaaatt tttgatttct attacgaaca ggacaaaaat cctgcttatt
    10621 gcactaaaac taagccgttt caggaatttg cggcaaattt acggctttta ccgaacctaa
    10681 tgctttcgct ttttggtaaa acgccaattt gtattcaagc aaatctaaat agcgttttaa
    10741 ttcggcaatt tgacacttca cattttctat ttgattttca aacaaggaaa ggcgttcttc
    10801 aatggtatcg tcgccaatga cggtacattc cgcaaagcgt ttgatgtctt ttaagctcat
    10861 tcccgtattt ttcaagcatt gcaataagcc caaccattgc aaatcgttat cggtaaaaca
    10921 gcggttaccg tattcatcac gtccgatatt gggcaacaaa ccttctttgt cgtaaaaacg
    10981 tagggtgtgg gcggagatgc ctattttttc ggcggctttg gcagtagtat aagtcatttt
    11041 ccctccttct aaacaaaaac agtaaaaaac acttgcttta gagttaactc taaagtgtaa
    11101 actgttgcta tgttgctcag gcaaggcaac tttgtcaatg aattaagagg aaagacaatg
    11161 gaaatgaaac aagccgattc aaccatcaaa tctcgtgcgg cggtggcatt cgcccctaac
    11221 caacccttac aaattgtgga aatcgacgta gaaatgccgc gtaaaggcga ggtgttaatc
    11281 cgcaataccc acactggcgt gtgccatact gatgcgttta cgttatcagg aagcgatcct
    11341 gaaggcgtat tccctgtggt gcttggacac gaaggtgcgg gtgtggtcgt tgctgtgggc
    11401 gaaggtgtgt caagcgtaaa accgggtgat cacgtgattc cgctttacac cgccgaatgt
    11461 ggcgaatgtg agttttgttg ttcaggtaaa accaacttgt gcgtctcagt gcgtgataca
    11521 caaggtaaag gcttaatgcc ggacggcacg acgcgttttt cttatcaagg tcagccgatt
    11581 tatcactata tgggctgttc gactttcagt gaatactccg ttgttgccga agtttcactg
    11641 gcgaaaatca accctgaagc caaccatgaa caagtatgtt tgctcggctg cggcgttacc
    11701 acaggtattg gtgcggtaca taatacggca aaagtgcaag aaggcgactc tgttgccgtg
    11761 tttggcttag gcgcgattgg tttggcggtg gtgcaaggtg cgcgtcaagc caaagccggc
    11821 cgcattatcg ccattgatac caatccatca aaatttgagt tggcaaaaca gtttggtgca
    11881 acggattgtt tgaacccgaa cgattacgat aaaccgatca aagatgtgtt gttagacatt
    11941 aataaatggg gcattgacca tacctttgaa tgtatcggca acgtaaacgt aatgcgtcag
    12001 gcattagaaa gtgcacatcg tggttggggt caatccatta tcatcggcgt agcaggtgca
    12061 ggacaagaaa tttcaacgcg tccgttccag ttggtaacag gtcgtgtttg gaaaggttca
    12121 gcatttggcg gtgtgaaagg tcgctctgaa ctgccgaaaa tggtggaaga ttcaatgaaa
    12181 ggcgacattg agttagaacc gtttgtaacc cacacaatga cactcgatca aatcaataaa
    12241 gcctttgact taatgcacga aggtaaatcg atccgcgccg ttattcacta ctaaggtatg
    12301 cgatgaaact gattgaacaa catcaaattt ttggcggttc gcaacaagtt tgggcgcatc
    12361 atgcccaaac gctgcaatgc gaaatgaaat ttgccgtcta tttgccaaat aatccagaaa
    12421 atcgaccgct tggtgtgatt tattggcttt ccggcttgac gtgtacggaa caaaatttca
    12481 ttaccaaatc aggctttcag cgttatgcgg cagaacatca agtaattgtg gtggcctccg
    12541 atagcagccc tcgcggagag caagtgccga acgatgatgc ttacgattta ggacagggtg
    12601 caggctttta tttgaatgcg accgaacagc cttgggcggc gaattatcaa atgtatgatt
    12661 acattttgaa cgagctgccc cgtctgattg agaaacactt tcctaccaac ggcaaacgtt
    12721 ccattatggg gcattcaatg ggcggacacg gcgcattggt attggcgctg cggaatcagg
    12781 aacgttatca aagtgtttct gccttttcgc ctattttatc gccaagcctc gtgccgtggg
    12841 gagaaaaagc ctttactgct tatttaggga aagaccgtga aaaatggcag caatatgatg
    12901 cgaactcact cattcaacaa ggctataaag tgcaaggtat gcgcatcgat caaggcttgg
    12961 aagatgagtt tttgccgaca caattgcgta ccgaagattt tatcgaaacc tgccgtgcgg
    13021 caaaccagcc ggtcgatgtg cgtttccata aaggctacga tcacagctat tacttcatcg
    13081 ccagttttat tggcgagcat attgcttatc acgccgcgtt tttgaagtaa accaaagagc
    13141 gttcagtgtt caaagcagtt ttgggatagc cggcacgagg gcggtaagaa gtgccggcat
    13201 aaacgtatgc cgtctgagcc ggaaggagcc gactctacgg attatagtgg attaacaaaa
    13261 atcaggacaa ggcgacgaag ccgcagacag tacagatagt acggcaaggc gaggcaacgc
    13321 tgtactggtt taaatttaat ctactataaa aggcatttga gctcatatct gcaccatatt
    13381 gaaacgccgc ctttgcttat acccccttgt gcgcgtcatt attcttttcc acggaaaatg
    13441 ccaagtttga aggaaatcat ttataatacc gacggtaagc attttctttc tccgccgcaa
    13501 gaagtataac aaggttaaat atgagtaata gagaccaact ttttaaagcc ccgccgtttg
    13561 aaaaccacag cccgctgacc tggtatcagg ctgcctcaca actgcccaac ttcatccgcg
    13621 acgacgcgca ggcagccgcc atcgaacacc tcgatcggct ttggaccgaa ttgatgatgt
    13681 tcaaacgcaa aagaaaccgt tttttaggca ggagtttgcg ttccccgcaa gtccccaaag
    13741 ggctttattt ctatggcggg gtcggacgcg gcaaaagctt tctgatggac gcttttttcg
    13801 gctgcctccc ttaccgccgc aaacgccgcg tccactttca tgcctttatg gcagaaatcc
    13861 accagaggct gaaaaccctg aaaagcgaaa gcaacccgtt gaaatccgtt gccgccgaga
    13921 ttgccaaaga aacccgcgta ttatgttttg acgaatttca tgtcagcgat attgcggatg
    13981 caatgatttt aggccgtctg ctggaaaacc tgcttaacga gggcgttgtt ttggtggcga
    14041 cttcaaacta cgcgccttcc gaactctacc cgcaaggtca aaaccggagc agttttcttc
    14101 ccacaatcgc gctcatcgag tccagcctga ccgtcttaaa cgttgacggc ggtgaagact
    14161 accgactgcg taccctccgc cccgccgaga ttttctttac gcctgccaat gaagaaaatg
    14221 aggcaaaact ggcaaaactg ttcaaagaaa tgacaggcat taccgatttg aaccccggca
    14281 tcagcaccat ccatggtcgg gagattcccc acaaagccga gtccggccgt gccatatggt
    14341 ttgatttccg cgcactgtgc ttcggccccc gctcacagtc cgactatctg tatttggccg
    14401 aacattatga aatggttttt atttcaggtt tggaacaact ctcaccgcaa gaaaaggcgg
    14461 aggcgcggcg gctgacttgg ctgattgacg tactctacga tttccgggtc aaactgtgtg
    14521 ccaccggcgc ggtagatgtc aaccatatct atacggaagg cgattttgcc gaagaattta
    14581 cccgcaccgc cagccggatg gtcgaaatgc agtccgaagt ttatttggaa cagccgcacc
    14641 tgaccctatc tcccaaggct tcaggcggat aagttatttt tttgatagaa taccgatttg
    14701 attcttctta agtaaaaata aggatatagc atggcgattg aacgtaccat ctccatcatc
    14761 aaacccgatg ccgtcggcaa aaatgttatc ggcaaaatat acagccgctt tgaggagaac
    14821 ggtctgaaaa tcgttgccgc caaaatgaag cagcttactc tcaaagaggc gcaagaattt
    14881 tatgcggttc ataaagaccg ccccttctac gccggattgg ttgaatttat gaccggcggt
    14941 ccggttatga ttcaggtatt agagggtgaa aacgccgtcc tgaaaaaccg cgaactgatg
    15001 ggtgcaacta atccttccga agccgccgaa ggcacgatac gcgcggactt tgccacttcg
    15061 gtcagcatta atgccgtaca cggttccgac agcgtggaaa atgccgcttt ggaaattgcc
    15121 tactttttca gccaaaccga aatctgcccc cgttgataca atacaccgca caactcctct
    15181 tcagacggca taaatatatc catgccgtct gaaaactctg tcgcaaaagg cttcaaatca
    15241 aacttgcctg ccctgcaatt ttttatttga agccttaatt taagaaaaac acaaacacat
    15301 gaaaaccaat ctgctcaact acgaccttca agggctgacc cgacattttg ccgatatggg
    15361 cgaaaaaccc ttccgtgcca aacaggttat gcgttggatg caccaatccg gcgcgcaaaa
    15421 ttttaacgaa atgaccgatt tggcaaaatc gttgcgccat aaactgaacg aacaggcagg
    15481 catcgaaatt cccaagctga tgatgtctca aaaatcttca gacggcactc gaaaatggct
    15541 tttggatgtc ggtacgggca acggggtgga aaccgtcttc atccccgaat cggatcgcgg
    15601 cacgctctgc atttcctcac aagtcggctg cgctttggaa tgtacatttt gttcgaccgg
    15661 ccggcagggc ttcaaccgca atttgactgc tgccgaaatc atcgggcaat tgtggtgggc
    15721 aaacaaagcg atgggtgtta caccgaaaaa cgaacgcgta atttccaatg tagtgatgat
    15781 gggtatgggc gagccgatgg cgaacttcga caatgtcgtt accgccttaa gcatcatgct
    15841 ggacgaccac ggctacggtt tgagccgccg ccgcgtaacc gtttccactt cgggtatggt
    15901 tccccaaatg gacaggttgc gcgatgtcat gccggtggct ttggcggttt ccctccacgc
    15961 ttccaatgac gaagtccgca accaaatcgt accgttgaac aaaaaatatc ccttgaaaga
    16021 attgatggct gcatgccaac gctatctagt caaagcaccc agggatttca tcactttcga
    16081 atacgtcatg ttggacggaa taaacgataa ggcgcaacat gcgcgcgaac tgatcgaact
    16141 ggtcaaagat gttccctgca agttcaatct gattccgttc aatccctttc caaactctgg
    16201 atacgaacgc tccagcaatg agaacatccg tgtgttccgc gatattttgc agcaggcagg
    16261 atttgtcgtt accgtacgaa aaacgcgcgg cgacgacatc gatgccgcct gcggacagtt
    16321 ggcggggcag gttcaggata aaacgcgccg ccaacaaaaa tggcagcaga ttttaatcgg
    16381 acaacagggg taattatgcc ttttaagcca tccaaacgaa tctctttatt acttgtcctt
    16441 gccttgggcg cgtgcagcac ttcctaccgc ccctcgcggg cagaaaaagc caatcaggtt
    16501 tccaatatca aaacccagtt ggcaatggaa tatatgcgcg gtcaggacta ccgtcaggcg
    16561 acggcaagta ttgaagacgc cctgaaatcg gaccctaaaa acgagcttgc ctggctggtc
    16621 cgtgccgaaa tctatcaata cctgaaagtt aacgacaagg cgcaggaaag tttccggcaa
    16681 gccctctcca tcaaacccga cagtgccgaa atcaacaaca actacggctg gttcctgtgc
    16741 ggcaggctca accgccctgc cgaatctatg gcatatttcg acaaagccct ggccgacccc
    16801 acctacccga ccccttatat tgccaacctg aataaaggca tatgcagcgc aaaacagggg
    16861 caattcggat tggcggaagc ctatttgaaa cgttccctcg ccgcccagcc gcagttccca
    16921 cccgcattta aagaactggc gcgcaccaaa atgctggccg ggcagttggg cgatgccgat
    16981 tactacttta aaaaatacca aagcagggta gaagtccttc aggccgatga tttgctgcta
    17041 ggctggaaaa ttgccaaagc cctcggcaac gcacaggcgg catacgaata tgaagcacaa
    17101 ttgcaggcga atttccccta ctcggaagaa ttgcaaaccg tcctcatcgg tcaataaaca
    17161 gattcaaacc atatgaacac actccaacgc cgcaagacgc atcaagtccg catcgatcat
    17221 attaccgtcg gttcagaagc acccgtcgtt atccaatcta tgaccaacac cgacactgcc
    17281 gatgcaaaag ccaccgcatt gcagattaag gaattgagcg atgccggatc cgaaatggtg
    17341 cgtattaccg tcaacagccc cgaagccgcg tccaaagttg ccgaaatccg ccgccgcttg
    17401 gacgatatgg gctatgccac accacttatc ggcgatttcc acttcaacgg cgaacgcctg
    17461 ttggcggaat ttcccgaatg cggcaaagca ttgtccaaat accgcatcaa tcccggcaat
    17521 gtcggcaaag gcgtaaaagg cgatgaaaaa tttgccttta tgattcggac tgctgctgaa
    17581 aacgataaag ccgtccgcat cggcgtaaac tggggttctt tggatcaaag cctcgccaaa
    17641 cgtatgatgg atgccaacct cgcttcttcc gcgccgaaac cgcccgaaga agtgacgaag
    17701 gaagcactga ttgtctccgc tttggaatct gccgaaaaag ccgttctatt gggactgccc
    17761 gaagacaaaa tcatcctgtc gtgcaaagtc agcgcggttc aggatttgat tcaggtttac
    17821 cgcgaactgg gcagccgttg cgcctatccg ctgcatttgg gtttgaccga agccggtatg
    17881 ggcagcaaag gcattgtcgc atcaacggcg gcattatccg tcttgcttca agaaggaatc
    17941 ggcgacacca tccgcatttc actgactccg gaacctggca gcccgcgtac tcaggaggtc
    18001 gtcgtcgggc aagagatttt acaaactatg ggattgcgtt cgtttacgcc gatggttacc
    18061 gcctgccccg gctgcgggcg taccaccagt accgtatttc aagagctggc acaagatgtt
    18121 caaaattacc tgcgccaaaa aatgtctata tggcgtaccc tttatcctgg ggttgaatcc
    18181 ctgaacgttg ccgtaatggg ctgcgttgtc aatgggcccg gagaaagcaa attggccgac
    18241 atcggcatca gccttcccgg tacgggagaa acacccgtcg cgccggttta tgtggacggg
    18301 gagcgcaaaa taacactgaa aggtgataat attgcaactg aattcctagc tattgtagag
    18361 gaatatgtca aaaccaacta tggtgaaaac ggctccaaac gcaaccagaa caaaatcatc
    18421 cctatacagt ccctataaga caaatgccgt cctgaactgt tttcagacga catttgtttc
    18481 tctcagattt cttattaaaa ctgtaaagaa gcacggttct ccaagatttg atcaatcaga
    18541 ccatattctt tagcctcttc ggcggacatg aaattatcac ggtcggtgtc gcgctccaaa
    18601 tctgccaaat cgcggccgca atgtttcgcc atcaggcggt tgagtttttc tttgattttc
    18661 aacagttcgc gtgcgtgaat ttcaatatcg gatgcctgac cgcccaagcc gccgctgatt
    18721 aaaggctggt gaatcataat ccggctgttg ggcagggcga aacgtttgcc tttttcgcct
    18781 gccgacaata agaacgcgcc catacttgct gcctgcccca agcacaaagt cgatacatcg
    18841 ggcttgataa aattcatggt gtcgtaaatc gacataccgg ccgttaccga accgcctggc
    18901 gagttaatat agaagaaaat atccttatcc ggattctcac tttccaaaaa caacagttgg
    18961 gcaaccacca gattggcgga ctcgtcggtt accgggccga ccaagaatac gatgcgctct
    19021 ttcaaaagcc gagaatagat atcgaatgca cgctcaccgc gaccgctctg ctcgataacg
    19081 gtagggacaa gatagttatc aaaagacatt tcgtctcctt tcatgatgta aaagcaccaa
    19141 agcgggcttt aaaagcggct tcggtgcttt caaaaactgc cctaagacgg cattttcagg
    19201 ataatcaggc ttgcgcgccc atcacttcgt caaaagacaa agctttttcg tttactttgg
    19261 ctttacccaa aacgaaatca acgacgttgc tttctatcgc caaagaagtc ggggcttgca
    19321 ggcgggaagg ctctgcgtag taccagtcga ttacttcttg aggatcttcg tagctttctg
    19381 cgaagttggc gacaacggct ttgacttgct cctcagtcgg ttccagtttg ttttcatcaa
    19441 ccagtttggc caaaatcaga cccaaagata cgcggcgttc ggcttgttct ttgaatatat
    19501 ccaaaggcag atccaagttg gcagcatcag ccataccttg gttaacaaaa ttttgtttca
    19561 tttcgtttgc caagcgtgcg gcttcttcat tgaccaaagc aacaggtgct ttcagctcta
    19621 cggctttgag cagcgcgttc attacggatt ctttggtttg ttcgtttacg cggcgttcca
    19681 cttcgcggct tacgtttttc tgcacttctt cgcgcatttt ggcaacgtcg ccatccgcaa
    19741 tacccaaggc ttttgcaaaa tctgcatcga cttcaggcag agtcgcttcg gaaacgttgt
    19801 tcagcgtaat ggtgaacacg gcagttttac cggcaacgtc tttgccgtgg tattcttcag
    19861 ggaagttgac ggtaacgtct ttactttcgc cagccttcat gccgactacg ccggcttcaa
    19921 attcaggcag catttgacct gcgcccaata cgaaggcgta gtttttggat gcgccgcctg
    19981 caaaaggttc gccgtcgatt ttgccttcaa agtcaatgat gacgcggtcg ctgtttcggg
    20041 cttcgcgttc gacatggttg aagcgggtgc gttgtttgcg caggatttct acggtttggt
    20101 ccacttcggc atcaccgacg gaagcggtta ctttttcaac ttcttgtgca gacaaatcgc
    20161 cgataacgac ttcggggaac acttcaaaaa tggcggcaac tttgaaagat tctttatcgt
    20221 cttgttcttc aacgccttca aaacggggga agcctgccac tttcaactct tgggcaacgg
    20281 caacatcgtg gaagcggcgt tgcaccagct cgttgatcac gtcgttttgc gcgctcgcac
    20341 cgtacatttg ggcaatcatt tttaaaggtg ctttacccgg gcggaaaccg tcgatttttg
    20401 cacggcgctg ggtttgtttc agttttttat cggtttctgc gttgatttcg gaccaaggca
    20461 gggacaacac tactttgcgt tccagatttt ctaaagtttc aacagttacg ctcatcataa
    20521 gcccttaaat ttgttgtgtt gataaaatgg taaactttct tccctgcatg gggaagcaaa
    20581 cagcgcaacg gtacggatat ttgaaccgca ttgccgcaaa ggggagattt tagctggcaa
    20641 gtatatcaca atgttccgcc tgaaacataa tatgccgtct gaaacgccaa ttccgccgtt
    20701 cagacggcat tttgcaatac gagctacaaa tggtccttgt gcgccaaaat tttacggctg
    20761 ccgttgaggt cggtgggaga aacgacaccc gcattttcca gtgcctccat caggtttgcc
    20821 gcgcggttat agccgatacg caactgccgc tgcaaagacg aaatggaggt ttttttgctt
    20881 tccaaaacat aggcgactgc ctgatcgaac aattcgtcgc tgtctgcatt cggattaacg
    20941 atattggcag tttccagcgc ggcctcgccg ctgagcagac cttcaatata gtcggctggg
    21001 gcttgcgatt tgacgtagtt gacgacttga tgtacttcgt cgtctgaaac aaacgcgcct
    21061 tgcaggcggg tcggttcggc actgccgggc tggaggaaca gcgaatcgcc atatttgagc
    21121 agttcgtccg cgcccatttg gtcgaggatg gtacggctgt cgattttgct ttgcacggta
    21181 aacgccatac gcgtcgggat gttggcttta atcaggccag taacgacatc gacactggga
    21241 cgttgggtgg cgacaatcat atggataccg gcggcgcgcg ctttttgggc gagacgggcg
    21301 atttgctgct cgacggcttt gcgttcggtc atcatcaggt cggcaagttc gtcgataacg
    21361 accacaatca tcggcagttt ttccaaaggc tcggggctgt cggggttcag actgaacgga
    21421 ttgagcagcg gcttgcctgc cgcttttgcg gcttcgactt tttggttgaa gccttccaga
    21481 ttgcgtacac cggcgtggga aagcaggcgg tagcgttttt ccatttcggc gacgcaccag
    21541 ttcaacgcct gccccgcttc gcgcatatcg gtcacgacgg gacagagcag gtgcggaatg
    21601 ccgtcgtaaa tgctcaactc aagcattttc gggtctatca tgataaagcg gacttcgtcg
    21661 ggcgtagctt tgaaaagcat agacataatc atgccgttca cgccgacgga cttgcccgaa
    21721 ccagtcatac cggcgaccaa aaggtgcggc attttcgcca agtcgccgac aacgggggta
    21781 ccggcaatgt ctttgcccag cgcgacggtc agcttggatt tggcttcggc aaacacgggc
    21841 gaggacaaga tttcgctcaa catcacgtct tggcgtttgt cgttgggcaa ctcgatgccc
    21901 atcgtgtttt tacctgcgat ggtttcgacg atacgcacgg attgcagcga catagagcgt
    21961 gccaaatctt tcgacaaggc aacaatttgg ctgcctttaa caccttgcgc gggttcgatt
    22021 tcgtagcgcg tgatgacggg accggatgtg gcggatacga cttgtacgcc gatgccgaat
    22081 tctgccagtt tggattcgat cagttcggca gtgcgctcca attcggcggg attgatgctg
    22141 acgggttcgc tgtcaggaat ccgcaatagg ttcaatgtag gcttgtggta ttcgcccgcc
    22201 tgccgaggtt cgtcatcttc aaacagagaa acctgaattt tgggcgacgg cgcgacggaa
    22261 accgcgacgg atttgcggtt gctgctgctg ccttcgggca aggcaacggg tttggccgta
    22321 atattcttgg cttcttttac catgcgccgt gtattttggg tatcgacacc gtctgttttg
    22381 gtattcggcc ggcgttttcc caaagccatg accttgccgg ataaggcact caggcggttt
    22441 tgaaccgccc tgcccgcacc gttcaaaaat tccagccatg aaatctgcac cagcagggac
    22501 aacgacaaca gcagaacaac caagataatc agcaggctgc ccgatttccc cagcagccac
    22561 gcaaacactg cgccgacgcg tatgccgacc ataccgcctg ctccgacagg cagggagtcg
    22621 gcatattttc cgcccagcac aaaatactcc aagacggggc tgaagaccgt caggacaaac
    22681 agcgcggcgg cagcgatttt gtggttgtat gcctcgtttt ccgtctgttt tgcgtgcaga
    22741 cgaaaatttt tatacagcat gacgcaggca gccgctatcc accaccagaa cgaccagccg
    22801 aaaagataat agccgacatc ggcaacatac gcgccgaaca gtccgcccca attggcgaca
    22861 tcttccacaa ccggcgaact gtgcgaccaa gacggatcgc ccatatcgaa actaatcagg
    22921 gaaatcgcca aatacaaggt tgccgccaaa cccatcagcc acagtgcgtc gccgataagg
    22981 ttgacgacat gttcgggacg cgcctttttg gtttcggttt tctgcaactc tttgaccgcc
    23041 ttgagccgct cggaaacttt attgccccgt gcgccgttgt cggctttctt gttgcgtgcg
    23101 gacgttgggg acgggcttcc cgccctgcct tttgctgttt ttttatggga tttttctgtc
    23161 atgccgtatt accggaaaat gccgtctgaa ataaggaagc cggacggctt gcggattgaa
    23221 tatggaaagt gtcggattat actccatttc tcctgctttc atcctgcaac agacagacat
    23281 tgcctttcag acggcatatc tgttgcccgc catatgtatt tttacgcaga ccctcggcaa
    23341 accagtataa tccgtgccgt ttgaaccgat tgaaagaaga tggtatgaac caactgaaac
    23401 ttgccgtttc cggcgcgcag attttatttg tggcattcgg cgcaatggtg ctggttcccc
    23461 tgctgaccgg tctgaatccg gctcttgcgc ttttgggcgc aggcttggga acgctgctgt
    23521 tccaaatcac aaccaaacgc aaagtgccga tttttcttgg ttcttcgttt gcctttatcg
    23581 caccgattat ctactccgtc ggcgaatggg ggctgccttc caccatgttc ggactgtttg
    23641 ccgccggctt tatgtatttt gtgtttgccg cgctgatccg ttggcgcgga ctggcagcgg
    23701 tacacaaact gctgcctccg gtcgtcatcg gccccgtcat catggtcatc ggtctgtctg
    23761 ttgccgtggc ggcaagcagc atggcaatgg gtcaggcgga cggcaaacag gtcatcgact
    23821 ataccgattc gctgattctt tccggcttta cctttgccgt taccgccatc gtatcggttt
    23881 tcggcagcag gatgatgaag ctgattccca tcttgatcgg tgtcgcttcg ggttatgttt
    23941 tggcactgct gatgggactg gtggacacgg caagcattgc acacgcgccc tggttcgccg
    24001 ttccccattt tgaaacgcct caggtcaact ggcaggctgc actgtttatg ctgcccgttg
    24061 ccgtcgcccc cgccatcgaa cacatcggcg gcatcatggc aatcggcaat gtgacgggga
    24121 aagactatac gaaagacccg ggcttggaca aaacccttgc aggcgacggt ttgggcgtat
    24181 gcgttgcggg tctgatcggc ggcccgccgg ttacgaccta cggcgaagta acgggtgcgg
    24241 tgatgattac caaaaacagc aaccccgtca tcatgacttg ggcggcggtt tttgccgtct
    24301 gcatggcgtt tttcggcaaa ttcaatgcgt ttttggcttc cattccgatg ccagtaatgg
    24361 gcggcattat gctgctgctg ttcggcacga ttgcttcttt gggcgtgaaa acgttgattg
    24421 atgccaaagt cgatttgatg ctgccgaaaa acctggtcat cgtcagctcg gtactgacca
    24481 cgggcatcgg cggcatgacg ctcaaattgg gcagcttcag ctttgccggc gtgggcttgt
    24541 gcgccgtact tgccattatg ttgaacagcc tgctgcccga tccgaaagaa tcctgaccgt
    24601 cgatatagaa atgccgtctg aacatctttc agacggcatt ttccgtttta tttgagattt
    24661 tgaatcaaag agcgcacagt tccgccgtaa taagaaaaag atgtgcaata cactgtttcc
    24721 aagccgcatt gtccctgtac gccgtatttt ttgatgcact ggttgagtgc gacctgatga
    24781 acgctcgtaa aacgcggaga agtaatcacg acggcgtttt caacgcgcat cgcgcccaag
    24841 gctttcgggt atgccagcgc gacacaggta ttgttcagcg acacgaccga ccggcatccg
    24901 gtcggctcgt cttcggcaat gcccgcaagc gtgtcctgac ctttgcagaa ggcttccaac
    24961 tcggcaaacg cttcgctttt cgtcgaatct tcttttgtgg ttttaacctg caaaacatcg
    25021 tccgcattct gcggattctg ccaaacggcg agatagccgt aagtatcggc agcccgtgcc
    25081 gccgcagtca tcaggcatag tgccgatacg gccagtatct ttttcatcat gataaattcc
    25141 cgacggttcg tccaaattct gttgcattat aaacaaaaaa caggataagt cccgccttat
    25201 cggcttatcc ctccccgcag attgcaccgc cgggtatggc aaaccgattt cggcagcgca
    25261 aatccgcata ccgccgcctt agcggcaagc cgttgttttc agacggcatt gcggccaacc
    25321 tttgcggcgg gcgaaaaacc ttgtcctata atttatcccg cttcaaaatc agcatacggt
    25381 cggaaatgca aaaaatatct ttcaatttgt tgaaacctgc aaccccctga aaatagggaa
    25441 acgccgcccc ggtttgaacg gtgcgccgca tattccgatg ccctcccccc gataccttcc
    25501 ggcaagccca gaaatgcccg gcaacaatat ccatccggca aaaatccgaa acaacacacc
    25561 cggtggcagg cagagtcaaa ccgccccgca aagcatccgc catcagaaaa acaaaccgcc
    25621 tccgagggct tcatcctaaa gggcgtattg ttcgataatg gtttgggtta taatccccta
    25681 tcgattctcc acgtccgtga gacacttcag ctatggaaac cccgaccaac accccgcaac
    25741 gctccctgcg tcaaaacagt atctacctgc tgcccaactc ctttaccatc gccgcgctgt
    25801 tttccgcatt ttatgcaatc acccaatcca tgcacggacg ttatgaaacc gccgccatcg
    25861 cggtattcat ctctatgttg ctggacggta tggacgggcg cgtggcgcgg ctgaccaaca
    25921 gccaaagcgc gttcggggag cagctcgaca gccttgccga tatggtcagc ttcggcgttg
    25981 ctcccgctct gattgcctac aaatggcagc tttggcagtt cggcaaaatc ggttattccg
    26041 tcgccttcat ctactgcgcc tgcgccgccc tgcgcctcgc cctgttcaac acactcatcg
    26101 gcaaggtgga caaacgctgg tttatcggcg tgcccagtcc gactgccgcc gcgctgattg
    26161 tcgggctgat ttgggtcaac cacagcgtcg aaaaattccc cgccgtccac tggtgggcat
    26221 tgggcatcac actgtttgcc ggcctgtcga tgattgtcca aatccctttt tggagtttta
    26281 aagaaatcaa catccgcaga caagtcccct ttgtcggaat gctgcttgcc gtcttactgc
    26341 tgcttctggt cacttgggaa ccgtcgctcg tcctcttcct gttctttctc ggatacagcc
    26401 tgtccggcta cattatggcg gcacgccgat tttggaaaaa atacagaaag gcggattaaa
    26461 tgtggcattg ggacattatc ttaatcctgc ttgccgtagg cagtgcggca ggttttattg
    26521 ccggtctgtt cggcgtaggc ggcggcacgc tgattgtccc tgtcgtttta tgggtgcttg
    26581 atttgcaggg tttggcacaa catccttacg cgcaacacct cgccgtcggc acatccttcg
    26641 ccgtcatggt cttcaccgcc ttttccagta tgttggggca gcacaaaaaa cgggcggtcg
    26701 actggaaaac cgtatttgcg atgatgccgg gtatgatatt cggcgtattc acgggcgcac
    26761 tctccgcaaa atatatcccc gcgttcgggt ttcaaatttt cttcatcctg tttttaaccg
    26821 ccgtcgcatt caaaacactg cataccggtc gtcagacggc atcccgcccg ctgcccaagc
    26881 tgcccggact gactgcggtt tccacactgt tcggcacaat gtcgagctgg gtcggcatag
    26941 gcggcggttc actttccgtc cccttcttaa tccactgcgg cttccccgcc cataaagcca
    27001 tcggcacatc atccggcctt gcctggccga ttgcactctc cggcgcaata tcgtatctgc
    27061 tcaacggcct gaatattgca ggattgcccg aagggtcact gggcttcctt tacctgcccg
    27121 ccgtcgccgt cctcagcgcg gcaaccattg cctttgcccc gctcggtgtc aaaaccgccc
    27181 acaaactttc ttctgccaaa ctcaaaaaat ccttcggcat tatgctgctt ttgattgccg
    27241 gaaaaatgct gtacaacctg ctttaaaaca cacgaaaaaa cctttttacc gtttgcacaa
    27301 gcaattaatc aggacaaagc tgcccagtct cctgttccga caaaaggaca gacaacctga
    27361 ccgtgcgccc gacttttacc cttaacttct tctgcccaca gattccattg cctttttcca
    27421 aactgccgat tgccccgcct tcacgcccga aggcatcggc gcatcgcctg ccgtgccgat
    27481 tccacgcgat gcggctgcct cccaaacggt atttccgcca taatgaccgg catacaagcc
    27541 gcaacctttg caatcatata tataagttat taaattttta ggatgtattt tgacaatctg
    27601 ttgatttcaa ctgcttgcaa gggaaaaggc cattattttt cggtcaatca ggaagttatc
    27661 ctattgaaca ttttgaaaca aagtatgtta tcagcaccat attgaaacac agccaaattt
    27721 tatgcccgat accattttca aaataaataa tcccctgatt ttcacagatt tctcaaaatc
    27781 agaaaagttt ttgtcaattg aatattttgg ctgtgtttta gtaatctgtt gatttcaatt
    27841 atttgcaagg gaaaagacaa ttattttttc ggttaggaag agacctatcc tattgagtat
    27901 attgaagcca ggtacgctgt actggtttaa atttaatcca ctataaaaac aaccatcccg
    27961 acttttgcag aatatacgga aaacaaaaca aataccgtct gaaaccacat tccgacaatc
    28021 ggcagggttt cagacggcat ctgataattt caattactcg gttgcggcaa cgacggcaac
    28081 ggtaatttta gcaacggcat cagtgtgcaa agccacttcc acttcgtact cgccaacggc
    28141 tttcagagga ccgttcggca gacgtacatt tgctttcacg gcttcgatgc cggcagcaac
    28201 gattgcagca gcaatgtcgg cattggtaac ggaaccgaac aggcgaccgt ccacaccggc
    28261 tttttgagca acggtaacgg tttgaccgtc caatttttcc tgacggactc gggcatctgc
    28321 caaaatttca gcctgtttgg cttccaattc ggcgcggcgt acttcaaact ctttcatatt
    28381 cgcttcggtc gcacgttttg ccttacctgc gggaattaga aagttgcggg cgtagccgtt
    28441 tttaacggtt acgatatcgc ccaagttgcc cagaccgccg attttttcta acagaataat
    28501 ttgcatgatt caatctccaa aattatttgt gttggtcggt gtaaggcagc agagccagga
    28561 agcgtgcgcg ttttacggca acagccaatt ggcgttggta gaatgccttc gttcctgtga
    28621 tgcgtgcagg aatgatttta ccgttttcag agataaagtc tttcagcaaa tcaacttgtt
    28681 tgtaatcgac ttcttggatt ttttcagccg tgaaacggca gaattttcta cgtttgaatg
    28741 attgacgagc cattgtcgtt taacctttat attcttgaat attttgtatc ctgagcatcg
    28801 gcataaggga acgtctgctt ttttgagcta aaaaaccttc gacgtgaaca tatacacctt
    28861 gccgatactg ccactcttcc gcctgcctgc ctaaaatccg tgccggaatt tccaattgga
    28921 caaggcattg ctgcccgttt tcctcctgcc acgattcgtg ctttaaaata atatctaaaa
    28981 cagggattcc ggcaggcgta tatcgaatag ggaaaacctt ttcaattaac gcggcaagcg
    29041 aaacaagatt attgaatccc aattattggg cgaccgcttc ttcagacgca ccgctcaaca
    29101 ggttcttagc cttttcacca cccaacatag gggatgcttc agtaacggcg tgtttggttt
    29161 tgatggttag atggcgcaat acggcatcat tgaagcggaa tgcggtttcc agctcttcaa
    29221 ccacttcggg agtggtttcg atgttcatca aaacgtaatg ggctttatgg attttgttaa
    29281 tcgggtaagc cagttggcgg cgaccccaat cttccaaacg gtgaatctta ccgtttgctt
    29341 cggcaatcat ggttttgtaa cgttcaacca tagcaggcac ttgctcgctt tgatcaggat
    29401 gaacgataaa cacgatctcg taatgacgca tgttatctcc ttatggatgg taaaacagcc
    29461 ttctgccatg cgaaagcaga aggcaaggtt caaagagcag gcattatatt ggggtttgcc
    29521 gacggaatca aggatttggt gcgaaaaatt tgcattccgc cgaaaatttc ggtttcagac
    29581 ggcattcaaa tgttttggct gcccagccag cgttccgcgt ccaaagccgc ctgacagccg
    29641 gaagccgcgc tggtaatcgc ctgacggtag gtatggtctt ttacgtcgcc cgccgcccat
    29701 acgccttcga tattggttgc gccgacattg tccgccgtgc cgcctttggt tttcaggtaa
    29761 ccggcttcgt ccatttccaa ctgacctttg aaaatatcgg tattcggctt gtgcccgatg
    29821 gcgataaaaa tgccgctgac ggcaatttgt tgctcagaac cgtcgttgtt ttttaataat
    29881 gcgccgttta cgccccgatc gtcgcccagt acttcttgca ggttgctttc cagcttgagg
    29941 atgattttgc cctcttccac gcgtttcatc agtttgtcga tcatgatttt ttcggcacgg
    30001 aactcgctgc ggcggtggat cagggtaacg gttttggcga tattggcaag gtagagcgct
    30061 tcctcaactg ccgtattgcc gccgccaact acggcaacat cttggttttt gtagaagaaa
    30121 ccgtcgcagg tggcacaagc ggaaacgcct tttcctgcaa acgcttcctc actcggcaaa
    30181 ccgaggtatt tggcggacgc gcctgttgcg acaatcaggg catcgcaagt gtactcgccc
    30241 atatcgcctt tgagtgtaaa cgggcgtttt tgcagatcga cggcgttgat ttggtcaaaa
    30301 atgatttccg ttccgaaacg ttcggcgtgg gcgagaaacc gcgccatcaa ttccggccct
    30361 tgcacgccgt cggcatcggc aggccagttg tccacttcgg tggtggtcat cagttgcccg
    30421 ccttgcgcga tacctgtaat aatgacgggg tttaaattgg cgcgcgcggc atagacggca
    30481 gcggtgtatc cggcggggcc ggaacccaaa ataatcagtt tgcggtgttg ggacattgtt
    30541 tttcctttgc tgtgtcaagt tttcggattc tactcgaatt atcggcgcgt ttgagaaatt
    30601 tcgaccatac cggcgttcag acggcatccc gcagccttaa ctgccgtctg aatatcaaag
    30661 caggaatcac gcttatgcaa caaaaaatcc gtttccaaat cgaaggcatg acctgccagg
    30721 cctgcgcttc gcgcattgaa aaagtgttga acaaaaaaga ttttgtcgaa tcggcggggg
    30781 taaacttcgc cagcgaagag gcgcaggtag tgtttgacga cagcaaaacc tcagtagccg
    30841 acattgccaa aatcattgag aaaaccggtt acggcgcgaa ggaaaaaacg gaagatacat
    30901 tgccgcaagc tgaagcagaa caccatatcg gctggcggct gtggctgctg tccgccatca
    30961 atattccgtt ccttgtcggt atggcgggga tgatgatcgg taggcacgat tggatgattc
    31021 cgccgttgtg gcagtttgcg ctggcaagca ttgtgcaact ttggctggca atcccgtttt
    31081 acaaaagcgc gtgggcgagc attaaaggcg ggctggcgaa tatggacgtg ctggttacta
    31141 tcggcacggt gtcgatttac ctgtattccg tttatatgtt gtttttcagt ccgcacgcgg
    31201 cacacggaat ggcgcacgtg tattttgaag cgggcgtgat ggtgattggt tttgtgtcgc
    31261 tgggcaaatt tttggaacac cgtaccaaaa aatccagcct gaacagcttg ggcttgctgc
    31321 tcaaactcac gccgacccaa gtcaacgtgc agcgcgatgg cgaatggaaa cagcttccca
    31381 tcgaccaagt gcaaatcggc gaccttatcc gcgccaacca cggcgaacgc attgccgccg
    31441 acggcgttat cgaaagcggc agcggctggg cggacgagag ccatcttacc ggcgaatcca
    31501 atcccgaaga gaaaaaggcg ggcggcaaag tgttggcggg cgcgctgatg accgaaggca
    31561 gcgtggtgta ccgcgccgcg cagctcggca gccaaaccct gctcggcgac atgatgaacg
    31621 cactctctga agcgcaaggc agtaaagcac cgattgcgcg cgtggcggac aaggcggcgg
    31681 cggtgttcgt gcctgccgtc gtgggcatcg cgttgttgac ttttattgtt acttggctga
    31741 ttaagggcga ttggacggtt gcgctgatgc acgccgtcgc cgttttggtg attgcctgcc
    31801 cgtgtgcgct cggtctggct acacccgccg cgattatggt cggcatgggt aaagcagtga
    31861 aacacggcat ttggtttaaa gacgcagcgg caatggaaga agccgcccac gtcgatgccg
    31921 ttgtgttgga caaaactggc acgctgaccg aaggcaggcc gcaggttgcc gccgtttatt
    31981 gtgttcccga cagcggcttt gacaaagacg atttgtaccg catcgccgct gccgtcgaac
    32041 aaaacgccgc ccatccgctt gcccgagcca tcgtttccgc cacccaagcg cgcggtttgg
    32101 agattcccgc cgcacaaaac gcgcaaaccg ttgtcggcgc aggcattgcc gccgaagtgg
    32161 aaggtgcggg attggtgaaa gcgggcaaag ccgaatttgc cgaactgacc ttgcccgagt
    32221 tctcagacgg cgtttgggac attgcaagca ttgttgcagt ctcagtcgat aacaaaccta
    32281 tcggtgcatt cgcacttgcc gacgcgttga aagccgatac cgccgaagcc ataggccgtc
    32341 tgaaaaaaca caatatcgat gtttacatca tgagcggcga caaccaaggc acggtcgaat
    32401 acgtcgccca acaactgggt atcgctcacg ccttcggcaa tatgagtccg cgcgacaaag
    32461 ccgccgaagt gcagaaactc aaagccgccg gcaaaaccgt ggcgatggtc ggcgacggca
    32521 tcaacgacgc gcccgcgctc gccgccgcaa acgtcagctt cgccatgaaa ggcggtgcgg
    32581 acgttgccga acacaccgcg tccgccacgc tgatgcagca ttcggttaat cagctcgccg
    32641 atgccctgct ggtgtcgcaa gccactttga aaaacatcaa gcaaaacctg tttttcgcct
    32701 tcttctacaa tatcttgggc attccgctcg ccgcgcttgg ctttttaaat cccgtcatcg
    32761 caggcgcggc catggcggca agctcggttt ccgtgttgag caatgccttg cgcctgaaac
    32821 gggtaaaaat cgattgaccg catataacca cccgacagct tttccgaacg gataaggctg
    32881 ccgctgccga tatgccgtct gaagccgttt ttcaaatgat tgatatgaat acagaaaacc
    32941 gttctccgga acaattcgac atcccgctct tcctcaaaaa cctgcccaag ctgccgggcg
    33001 tgtaccgttt ttttgacgaa ggcggcaaag tcttatacgt cggcaaagcg gtcaacctca
    33061 agcggcgcgt gtccggctat ttccaaaaaa acgaccattc gccgcgcatc gcattgatgg
    33121 taaaacaggt tcgccacatc gaaaccacca tcacccgctc cgaatccgaa gccctgattc
    33181 tcgaaaacaa cttcatcaaa gccctgtcgc ccaaatacaa tattcttttc cgcgacgaca
    33241 aaagctatcc ttatctgatg ctcagcggcc atcaatatcc gcaaatggcg tattaccgcg
    33301 gcacgctgaa aaagcccaac caatacttcg gcccgtatcc caacagcaac gccgtgcgcg
    33361 acagcatcca agtcctgcaa aaagtcttta tgctgcgtac ctgcgaagac agcgtgttcg
    33421 aacaccgcga ccgcccttgc ctgctgtacc aaatcaaacg ctgtaccgcg ccctgcgtcg
    33481 gacacatcag cgaagaagac taccgcgaca gcgtgcgtca agccgccact tttctcaacg
    33541 gcaaaaccga cgaactgacc cgcaccctgc aacacaaaat gcaaactgcc gccgcgaatc
    33601 tgcaatttga agaagccgcc cgctaccgcg accaaatcca agcactcggc attatgcaga
    33661 gcaaccagtt catcgacagc aaaaacccga acaaccccaa cgatatcgat ttgctcgcgc
    33721 tggcggtttc agacggcatc gtctgcgtac actgggtcag catacgcggt gggcggcacg
    33781 tcggcgacaa aagctttttc cccgacacca aaaacgatcc cgatccaaac ggacaagatt
    33841 acgccgaagc cttcgtcgcc caacattatt tgggcaaaag caaacccgac atcattatta
    33901 gcaacttttc cgttcccgat gcgctgaaag aggctttgga aggcgaacac ggcaagcaga
    33961 tgcaatttgt caccaaaacc ataggcgaac gcaaagtctg gttgaaaatg gcggaacaaa
    34021 acgcacaaat ggcgattgca caacgccgcc tgcaacaaag cagccagcaa caccgcatcg
    34081 acgaactcgc caaaatcctc ggtatggatt cagacggcct caaccgcctc gaatgtttcg
    34141 acatcagcca cacacaaggc gaagccacta ttgcgtcctg cgttgtgtac gatgagcaaa
    34201 acatccagcc ttcgcaatac cgccgctaca acatcacgac cgccaaaccc ggcgacgact
    34261 acgccgccat gcgcgaagtg ttgacgcgcc gttacggcaa aatgcaggag gccgaagcca
    34321 acggcgagac cgtcaaatgg ccggatgccg tgttaattga cggcggcaaa gggcaaatcg
    34381 gcgtagccgt atcggtatgg gaagaactcg ggctgcacat tcctttggtc ggtatcgcca
    34441 aaggcccgga gcgcaaagcc ggtatggagg agctcatact gccttttacc ggcgaagtct
    34501 tccgcctgcc cccgcacagc cccgccctgc accttctgca aaccgtgcgc gacgaatcac
    34561 accgctttgc cattacaggc caccgcaaaa aacgcgacaa agcacgcgtt acctcgtccc
    34621 tcagcgacat ccccggcgtg ggcagcaaac gccgccaagc cctactcacc cgcttcggcg
    34681 gcctgcgcgg cgtgattgcc gccagccgcg aggacttgga aaaagtggaa ggcatcagca
    34741 aggcattggc ggaaaccatt tataatcatc tgcattagta tgccgccaaa acaaaaaccg
    34801 tctgtaaaaa tatgatacag caggcccgcg tgccgatata aacctaactt cataacatat
    34861 aacgatgatt cgacaaaacg gaaaacgatc tgatatgaac aatcccgact taccctatcg
    34921 gcagacctta gaatgccttt ctcaaaaaca atataacttt accgaagtcc gccgactgct
    34981 gacagaagcg gccttggcag gtcatcccgc cgccgcattc gagttggcaa aacacctgat
    35041 ggatgcggac agcccctacc aagaccgcga acaaggtatg gaaatgctcc gcatcgccgc
    35101 cgaacagggg catccctacg cgcgttacaa tctggcatat atccaagaat tggaaggcgc
    35161 gcccccctga aaccctgata tcgctttaca ggcctccggc agaagcagga gtgcccgaag
    35221 cgcaagtccg cctgatgtac ctgctgtacg cgtcccggca ttttgaagaa gcactcgaat
    35281 gggcaaaaac cagcgcaaaa aacaacaacc cccacggaca atatctgctc gcccaatact
    35341 gccggtacgg cacaccgccg gattttgaaa cggcgcacct gctctaccga aaagcggcgg
    35401 cacaaggctt gccggaagca cattggcagc tcgggctgca ataccgtttc gggcaaggga
    35461 cgaaagtcga cacggcacag gccgtcaatc atttgcgcgc cgccgcgcaa caaggataca
    35521 ttcccgccta caccccgctt gccgaactca tcctacctac ggctcccgat gaagccgttt
    35581 accggttcca acaggcggca caggaaaatg accccgatgc ccatgccgca ctggccgaca
    35641 tctacctaca aggcaaatat caggaaagaa accacaaact tgccctgcat catgccgaag
    35701 cagccgcagc agaacgccat cccgaaggtt tgcggatact gggcgacatc tgccgctacg
    35761 gtttgggcat agcccccgat acggaaaaag cccggcatta ttaccggcag gcagccgaag
    35821 ccggcagcct ttccgcctat cagaaactca tatccgacag cgcgttaaac catcccgacc
    35881 aatacggcgg catcaaagat tccgccatca ggcggcaaag agcagaacag ctttatcaaa
    35941 aagcccaagc cctgcattac ggattacaat gtgcgcccga atacgcagcc gcgctcaaac
    36001 tctacacaga agccgcagaa ctcggacaca gcaaagccca aaccaatctg ggcagtatgt
    36061 actacttcgg acagggcata gccgccgact acggcaaagc ccgcaaatgg tttgaacaag
    36121 ccgccgcgca aaaagacagt atggcgttct acaacctcgc ctgcatccat tacagcggac
    36181 acggtgtcgg gccggacaaa gaaaaagcct gccgctacct gcaagaagcc ataaacaacg
    36241 gatacgggca aaaaagcgtc ctgcaagaac tgctgcaaca atggcaaaat gccgtctgaa
    36301 cagcgttaca cctaccctgc cgaaacgaaa caggtataat cgcccctttc ccttcccgcc
    36361 gtccgaacag gcctttcaca ttcagacggc atcctgattg cacaagcgca cggaagcatt
    36421 atgacagaca ccgccgaaaa ccaaacacaa aacaactggc aagccgaaca tccccgcagc
    36481 atccgcagct tcgtcctccg ccaaagccat atgaccgccg cacagcaacg cgccatcgat
    36541 accttatggg acagcttcgg catcgattac caagcaacac cggccgatct tgatgccaat
    36601 ttcggaagca accgacccaa aatcctcgaa ataggcttcg gtatggggac ggcaaccgca
    36661 gaaatcgccc gccgcctgcc cgaaaccgac ttcctcgcca tcgacgtaca cggtcccggc
    36721 gtaggcaatc tgctcaaact catcaacgaa aaccatttgg aaaacatccg cgtgatgcgg
    36781 cacgatgccg tagaagttat cgaaaatatg ctgcaagacg gctcgctcga cggcatccac
    36841 atattcttcc ccgacccgtg gcacaaaaaa cgccaccaca aacgccgtct gatacaagcc
    36901 cccttcatcg ccaaactgct gcccaaactc aaaaccggcg gctatatcca cctggcgaca
    36961 gactgggaag aatatgcacg gcagatgctt gaagtcctca gtagcttcga cagcctgcaa
    37021 aatacggcgg cagactacgc ccccaccccg gactaccgcc ccgaaaccaa attcgaagcg
    37081 cgcggcaaac gcctcgggca cggcgtttgg gacttggtat tcaaacggat gggctaacaa
    37141 accgccggat aaaaaaatgc tgtttgaagc atgtttgctt acagacggca ttttttcaag
    37201 ataaagcagc gagtgatgtt tcgatacaag gtttaaaaca atggtttgaa cgaaaaaacg
    37261 catgcgtgcg tatcacacat actgcacgtc agcttgagag tttgtgcggc cctcaggcta
    37321 cccttgctgt tgctccaaaa cgtatactac tcctatactg cgagggtcat tagagtaatt
    37381 atcctctgtt gcttgtaaat aactgtctgt atcttttatg cggtcaaata acttagctct
    37441 aaattcacca tcaatttcat aaacaaaaac agcttgtgcc ccatctggct cacgagataa
    37501 ggcattactt ctattactag gcagagcagc tctaactatt tccaaatgat tttcaggaat
    37561 atcagatata tcatttatat tttctacacg aaaagaatat gtcattttca gtcctcagaa
    37621 tgtaattgat caagttacga tgtttctcca catcttttgt ttctccagat cttttaagaa
    37681 cattgtggtc atcaactaaa ctttcaagtg cttttattac tcactcccaa acaacaaccc
    37741 ttccttaatc ccccgtatcc tatccctcag tacagccgcc tcttcaaact gcaaatccct
    37801 agctgcctgc tgcatggctt tttccagttt ggcgatttct ttaaccgcgt cttcttcgtt
    37861 gtgaatttcg ctgactttaa ccttgttttt gccttgtcta cggcctttac caccgtcttc
    37921 ttcgtggtac acgccgtcaa tgatgtcttt gacctgtttt ttaatctgtt gcggcacgat
    37981 gccgtgttct tcgttgaatt taatttgttt ttcacggcgg cgttcggttt cgtcgatggc
    38041 ggctttcata gagtcggtga ttttgtcggc gtacagaatc gcgacgccgt tcacgttgcg
    38101 cgcggcgcgg cctatggttt gaatcaggct gcggtgtgag cgcaggaagc cttctttgtc
    38161 ggcgtcgagg atggcgacga gggagacttc ggggatatcg aggccttcgc gcaagaggtt
    38221 gatgccgacg agtacgtcaa acaggccgag ccgtaaatct ctaatgattt caacgcgctc
    38281 tacggtatca atgtcgctgt gcaggtagcg cactttgatg ccgagttcgc tgtaatagtc
    38341 ggtgagttgc tccgccatgc gtttggtgag ggtggtaacg agaacgcgtt cgcctttttg
    38401 gatgcggtcg ttgatttcgc tcattaagtc gtcgacttgg gtggcgacgg ggcggatgat
    38461 gatttggggg tcgaccagcc ctgtggggcg gacgacttgt tcgaccactt gtccggcgtg
    38521 ttcttcttcg tatttggctg gagtggcgga aacgaagaca gtttgcggca tgactttttc
    38581 aaattcatgg aatttgagcg ggcggttgtc gcgggcggaa ggcaggcgga agccgtagtc
    38641 gacgaggttt tgcttgcgcg atgcgtcgcc tttgtacatg ccgccgattt gggtgacggt
    38701 aacgtggctt tcgtcgatga acatgatggc gttgtcaggc aggtagtcca tcagcgtggg
    38761 cggcggttcg ccttcttttt tgccagagaa gtgccgggag taattttcga tgcctttgca
    38821 gaagcccatt tcgtagagca tttcgaggtc aaagcgggtg cgctgttcga tgcgttgttg
    38881 ttcgacggga cggttttctt tggtaaagaa atcaatgcgt tcacgtaatt cttctttgat
    38941 ggactcgcag gcgcgcaaga cggtatcgcg cggggtaacg taatggctgg acgggaagac
    39001 ggtgtagcgg ccgacgcgct ggataaggct gcctgaaagc gggtcgaaca tatcgaggcg
    39061 gtcgatttcg tcgtcaaaca ggctgatgcg caaggcgttt tcggagcttt cggcggggta
    39121 cacgtcaatc acgtcgccac gcacgcggaa gctgccgcgt ttaaagtcca aatcgccgcg
    39181 ctcgtactgc atggaaacga gcgtggcgat gatgtcgcgc tgctcaatgg tgtcgccttc
    39241 tttaacggac aacaccattt gctgatactc ggtcgggtcg ccgataccgt agatggcgga
    39301 cacggtggcg acgataatca cgtcgtcgcg cgtcatcagg ttcttggtgg cggaaaggcg
    39361 catctgctcg atatgttcgt tgatcgcgct gtctttttca atgaacaggt cgcggctggg
    39421 cacataggct tcgggttggt aatagtcgta gtaggagacg aaatattcca ccgcgttttc
    39481 agggaaaaac tcgcgcattt cggcataaag ctgggcggca agggttttgt tgtgcgccat
    39541 gatgatggcg ggtcggccgc tttgggcgat gacgttcgcc atggtgtagg ttttgcccga
    39601 accggttacg ccgagcaggg tttggtaggc aaggccgtct gaaagccctt cgagcaagcc
    39661 ggcaatagcg gtaggctggt cgcctgcggg cgggaagggt tggtggagtt tgaaagggga
    39721 atcggggtat cggatgactt ccataatctt gcctgtgatg cgtttgcgga caaagcgtgt
    39781 agtagggatg ggtcggaaac gtctttcaga cggcataagg cggtgaaatc ctgaatgtat
    39841 gccgtctgaa acccaatcgc tacccaagta tagtggatta acaaaaacca gtacggcgtt
    39901 gcctcgcctt gccgtactat ttgtactgtc tgcggcttcg tcgccttgtc ctgatttttg
    39961 ttaatccact ataaatgccg cacggttcaa attccggtaa aaaatcgctc ataacctgtc
    40021 ctttcaaaca taatatgccg tctgaaatcc tttcagacgg catcgtcaaa acctacttct
    40081 tatctttttt atctttctta tctttatttg aaaccggctt tttcgccgcc agccccaaag
    40141 acttctgcca ctgctcgggc gacttgacta aatccaaagc tttccgcaac tggtcgtctt
    40201 tggcagggtt gggaatccgc cttgaagaca aatcctcgtc ctttttcttt ttaccttttt
    40261 cttttacagc gggcttatcc gcatcttttt caagcggcac ggcaagggtt tcactgttca
    40321 catcctcgcc gcccaaagga ttgccgatgt gtccgaccaa atccgcctcg cggctttcaa
    40381 aaatgcgttc cttatctttt acttcgacat cgggaacaat cccctgcgcc tgaatagaac
    40441 ggtcgttcgg cgtataatac agtgccgttg tcagcttgac cgcgctgccg ttggacaaag
    40501 gaatcaaagt ctgaaccgaa cctttgccga agctctgcgt accgacgatg accgcgcgtt
    40561 tgtgatcctg caatgcacct gcgacaatct ccgacgcgga agccgaaccg gaattaatca
    40621 acaccgtcat cggaacggtt ttcaactcgg caggaatgcc cgccaacgga tcgccgccca
    40681 tcccgtacac ataatcctca ggaacggctt tcagtaccat gcggtctttg ccgtcgcgtc
    40741 ccttggtgct gacgacgact gcttcaggcg gcaaaaacgc cgccgacacg ccgaccgcgc
    40801 cgttcaaaag cccgccgggg tcgtcgcgca aatccaacac cagccccttg agcggttttc
    40861 ctttattttc ctttaccagc tcttttgcgg cggtattgac gctttcgacc gtccgctctt
    40921 ggaactgcga cacgcggata tagccgtaat cgggttcgat caggtgatgg cggacgcttt
    40981 tcactttaat aatggcacgg gtcaggttga cgactatcgg cttgtcggca tttttgcgcg
    41041 acagcgtcaa agtaatcttc gtacccggct tgccccgcat tttcttcacc gcttcgctga
    41101 ccgtcatgcc gcgtgtcgaa acattatcga ttttcacaat gaaatcgccg cttttcaccc
    41161 ccgcctgttc cgcaggcgtg tcctcaatcg gcgaaaccac tttgacaaat ccgtcttcct
    41221 gcccgatttc catccccaag ccgccaaatt cgccgctggt ggactccttt atctcggcat
    41281 aacctttttt atccatatat tcggaatgcg gatccaaacc ggccaccata cccttcatcg
    41341 caccttcaaa caaatcggca tcgggtttgt cctgatagta gtttgccttg atttgaccgt
    41401 aaacctccgc cattgtgcgg atggattgca ccggcaggac ttcgttatcc cgcctgtcct
    41461 tctcggcggc aaaaccctgc accgccagac tgacggccac gccgctgatt gcacccaaag
    41521 tataaagtgc gattttctta aaaacaggtt tcgacattct tctttaactt tctctcttga
    41581 tttccaaaaa ccggaaaata caggtacggc aaacggcaaa cttcacggaa cagcgcacca
    41641 tatcggcacg atttgcataa agcctaccgt ttcggcaatc cgatcaacgt atccagctcg
    41701 aagggttcaa tacctgacct tgataacgta tttgcaggta aagcccctct tccccgtctg
    41761 gcagcgaccc gctcgagccg attttgcttc ctgccgcgac catataaccc ttgccgacgg
    41821 aaatttcgct caaaccggca tagatgctga tgtagttctc gccgtgatcg accacgacca
    41881 ctttgccgta gccgtccaac tcgtccgcat agcttaccgt tcccggcgca atgctttcaa
    41941 ccgttgccgg tgcagtggaa tagaacacgc ctttccaaac atcgccgccg ctccggttct
    42001 gcccgaaaag tccggtcggc acaccgtcaa ccggtttttt caaacgtcct tgcatgcggc
    42061 tgaaaccgtc ggcactgccg atacccataa ccgaaggcgc ttggatgttc ctgtcttcgg
    42121 cggtcaggtt ggacatttcc gcacgtcgtg cttcagcctt ctgctgcgcc gcttcttttc
    42181 tggctttttc ggctgccgcc agtctggctt cagccaattt tctttttgct tccgcatcct
    42241 gaatgcggtg ttcggccttt ttcttctcca aattgctcaa gagcttgttc agctgctgct
    42301 cgttcccttt ctgttccagc agttttcggg catctttggc gattttggca ttctgtctgc
    42361 ggctttccgt ctgttccgcc gcatcggtta caccctgttt tttcagcaga gattgcacgt
    42421 ttgcctgaat tttcttcaaa cgggcaagct cattgttgat tttctgctct tgtaccgcca
    42481 aagccttctg ctgtttttcc aaatccttga caacttcccg attggaggcg tttacataac
    42541 gcgtataacg caaaaagcgg tttttctgac ccggttcggc gtttttcagg aacagggcaa
    42601 ccgcattcgg ctggctgttt ttatagttcc ccgatacgaa acgggaaatc tgcgctttcg
    42661 tagcggcgac ttccgttttc aaacggttca gctcggtatt gagtttttgg aacttgtccc
    42721 aagcctcgcg ctgtttgcgg ttgacggaag caaggttgcc gcgcgcctga cggatacgct
    42781 cttggcggat acgctcttgg cggatacgct cttcctgaag ctgtttgagg gaattgctga
    42841 catgaagcag cattccttcg ctttgtttga gcagggcttt tttgttttcg acatcattgg
    42901 tggcagcggc aacggcggct ttcaattcgt cggaatcggt tttggcattt ttctcttccc
    42961 tgtatttttt gtcctgtttc actgctttgc cgttcttgtc ggaacggact tttttatttg
    43021 cagaaacagt gtctttttcc gccttgccgc ccttgcgcgg attgccctgt ccttttgcct
    43081 cttttttgcc ttgcttgttt tcaggctgtg tttttgcgtt tttttctttg gatccggaca
    43141 cgggcttgcc atgtgccttt ttgtgttccg ccttcgattt cttatcccct tcgtgtcctt
    43201 tgcgcacaga ctgcctggat gtcgcctcct tctctgcttc tttgcggttt ttggcggttt
    43261 ttttggactc tttgccctct tttgccgcct ctttgccgcc tgttttttta tctttcactg
    43321 cgccattttt gcctttttct tttttgcctt ccgccgcttc gggctgttct tttttgttct
    43381 tcgtctgttt tttcacttcg gcggaacggt tgtgtgccgc gtcgtgggcg gcaacggcgg
    43441 gcgtggaaaa aacgagcatc agggcaagca gaaggggttt gtagcgcatg gttcgacctt
    43501 cggaaaaagt tggataatac tgaaggctgc acgaaagcag ccggacgttt ggattatact
    43561 gtcagttatg ccgtctgaaa atgccgtttg cccaatcttg cgccttcttt gcgcggatac
    43621 ttgcaatcgg ctcaaacagc cttatattgt gcatcatatt ttcaatgccg caacggatat
    43681 tgtgttccga cacacagggt agcacattaa gccgcatacc gtatgttgcc cgattttggg
    43741 aacgtgcgcc cctccaaaca aagcaagccc tgccgccttc acggaaaacg gggattcaac
    43801 cgataaggaa attttgatga acagactgct actgctgtct gccgccgtcc tgctgactgc
    43861 ctgcggcagc ggcgaaaccg ataaaatcgg acgggcaagt accgttttca acatactggg
    43921 caaaaacgac cgtatcgaag tggaaggatt cgacgatccc gacgttcaag gggttgcctg
    43981 ttatatttcg tatgcaaaaa aaggcggctt gaaggaaatg gtcaatttgg aagaggacgc
    44041 gtccgacgca tcggtttcgt gcgttcagac ggcatcttcg atttcttttg acgaaaccgc
    44101 cgtgcgcaaa ccgaaagaag ttttcaaaca cggtgcgagc ttcgcgttca agagccggca
    44161 gattgtccgt tattacgacc ccaaacgcaa aaccttcgcc tatttggtgt acagcgataa
    44221 aatcatccaa ggctcgccga aaaattcctt aagcgcggtt tcctgtttcg gcggcggcat
    44281 accgcaaacc gatggggtgc aagccgatac ttccggcaac ctgcttgccg gcgcctgcat
    44341 gatttccaac ccgatagaaa atcccgacaa acgctgatat gaacctctcc aaccactttc
    44401 tcgtcgccat gcccgatatg gaagacgcgt ttttttcaca atcggtcgtc tatatctgca
    44461 aacacgatga agacggcgca ctcggcatcg ccatcaacaa accctctccg attacgatgg
    44521 acatgatttt ttccgccacc ggcaaaaaca tccccatgcg gatgcagcac gacagcgtga
    44581 tgatgggcgg gccggtgcaa gtcgagcgag gttatgtcgt gcataccccg atcggcaact
    44641 ggcaaagcag tatcggcgtt tcagacaata tcgcgctaac ttcttcccga gacgtgattg
    44701 aaaatatttc acgcgaaggt gcggttgaca aagccttgat cagcataggc tattcaagct
    44761 ggggaaaagg ccagctcgaa cgcgaacttg ccgacaatgc gtggctgact gttcccgccg
    44821 acgaacacat cctgttcgac atcccctacg aacaccgtta cgccgccgca ttcgccaaac
    44881 tcggcatcga cccgctcgcc ctgttttcgg gagccggcca tgcataaaat tccaaaagga
    44941 acggcactgg cattcgactt cggcgaagcg cgtatcggcg tggcacaagg agacgcggaa
    45001 ttagggctat cccatccttt gagcaccgtt accggcggca gcaacgatga aaagttcgcg
    45061 gcaatcgcca agctggttca agaatggcag ccgcgttatt ttgtcgtcgg actgcccgtg
    45121 cataccgacg gcacgaaaca tgaaatgacg cacctgtcgc gcaagttcgg acgcaggctg
    45181 aacggcaggt tcaatctccc cgtctattgg gttgacgaac ggctgtcgtc cgtctatgcc
    45241 gaaagcctgc tttcggaagc acaggtcttc ggcaaaaaac gcaaatcggt gctcgaccaa
    45301 gtggcggcgc aagccatctt gcacggtttt ttcgagggcg gtccggcgga atgtttcaac
    45361 gggcgtgagg gttaagcggc gcggttaaca ccctaccgtg aaagaggcgc gcaccaagcc
    45421 gtccagctcc aatgccaaat tgtcccccgc accgattgcg cccacgccgg agggcgttcc
    45481 ggtaaacacc aaatcccctt tccccaaacc gtaatctgcc gccagtttgt gtaaaatttc
    45541 ccgaatcggg taaatcatca aaccggtatc cccgcgctgt ttcaatacgc cgttttgttt
    45601 taatgaaaac aacacattct cgggattgcc gattctgcct gccgccgcaa aatccgacac
    45661 gcacgcggaa tgcctgaacc cttttgcctt cagccagggc agcccttttt ccttcagacg
    45721 gcattggata tcccgtgccg taaggtccag ccctacacca tatcctgcga cacatcccaa
    45781 aatatcttta ccctcgcccg tgccgtctga atccttaccg accagcagca cgagttcgca
    45841 ctcaaactgc acatccctac taaactcggg cagcaagatt gtaccgccgc tgttcaaaat
    45901 gctgcctgac ggcttcataa acaccacagg ttcggaaggt atttcgtttt ttaactcttc
    45961 aatatgtgcg gcatagttcc tgccgataca gaaaatattg ccgacctcga ctgcttctcc
    46021 ttctaaaaat actgaagcca cttcactttc tccccaaata aaaatgccgt ctgaaattat
    46081 tttcagacgg catttgacca agcttaccca tttaataaag ctgttacacg cgcaacaatt
    46141 tctccgattg caactgcctg cgcttcgttg ttgcggcgtt cggcgtattc gacattgcct
    46201 tctttcaaag cgcggtcgcc gatgacgatg cggtgcggaa tacccaacag ctcggaatcg
    46261 ttcagcaata cgcctgcgcg ttcgtcgcgg tcatccagca gcacatccgc gcctgccgcc
    46321 agcaattcgg catagatttt gtcggcggct tcgcgtacgg tgtctgattt tttgtagttc
    46381 atcggcacga taacgacttc aaacggcgcc attgctttgg tccagatgat gcctttttcg
    46441 tcgttattct gctcgatggc ggcggcaacg acgcgggtga tgccgatgcc gtagcagccc
    46501 atttccataa tttgcgattt gccgttgttg tcaaggaagc ttacgttcat ggcttgggtg
    46561 tatttgtcgc gcaactggaa gacgtgtccg acttcaatgc cgcgcgcgag tttcagacgg
    46621 ccttgcccgt cggggctttc gtcgccttcg accacattac gcaaatcgac gaattcaggc
    46681 tcggcggcat cgcgcccgaa gttgaagctg gtgtagtggt agccgtcttc gttcgcaccg
    46741 atgacccagt ccgcgccttt ttcggtagcg aaatcggcat agactttgcc tttgaagccg
    46801 acaggaccaa gagagccgcc gtttgcgccg aactgttcga caatcgcggc agaacttgcc
    46861 atcgtcaatg gcgatttcac gcctgcgagt ttttcggctt tgatgtcgtt gaactcatgg
    46921 tcgccgcgca acagtaataa gacgatttcg ccttcgtttt cgctttcgac cacgatggat
    46981 ttgagggttt gttcaaccgg aatattcagg aattcaacca aagactcaat ggttttgaca
    47041 tttggtgtat gtactttggt caactcggcc tgagcagcgg tgcgttcgcc tttaagcggc
    47101 aaggtcggtg ccaactcgat attggcggcg taatcggaag tgtcgctgta tgcaataaca
    47161 tcttcgccgc tttccgccaa cacttgaaac tcgtgcgaac ccgtaccgcc gatgctgccg
    47221 gtgtctgcgg cgacggggcg gaatgccaag cccagacggg taaagatgcg gcagtaagcg
    47281 tcatacatgg catcataggt cgtctgaagc gaggcgtagt cggcatggaa ggaataagcg
    47341 tctttcatga cgaactcgcg cgcgcgcatc acgccgaaac gcgggcgcac ttcatcgcgg
    47401 aatttggttt ggatgtggta aaagtttttc ggcagctgtt tgtagctgtt gatttctttg
    47461 cgcacgatgt cggcgatgac ttcctcgcag gtcggtccca tgcagaaatc gcggtcgtgg
    47521 cggtctttca ggcgcagcag ttctttaccg taaaattccc agcggccgga ttcctgccac
    47581 agctcggcag gctgcaccac cggcatcagc agctccacgc tgcccgcgcg cgccatttcc
    47641 tcgcgcacga cgttttcgac tttgcgtaac acgcgcagcc ccatcggcat ccaagtataa
    47701 aggccggacg cgttggcttt aatcagaccg gcgcgtatca tcagcttgtg gctggcaagc
    47761 gcggcttcgg caggggcttc ttttaaagta gagataaaga attggctggc tttcataaaa
    47821 atatttttcc aaacaggcaa attcaaaagt aaatcgggtg cagattgtaa cgcgaaaaaa
    47881 gcaggttttg caccaacctc caaaatttac cccctgcccc aagcgcggga caaatcccat
    47941 aacagacggc aaaaacatga ccagaaacat catattgaac ataagcacat gatttttata
    48001 gatttaaatg tgcctatttt ttaatcaaaa taagcgtaca tttgttgcgt aagacttttt
    48061 taacacaagc cgtggcttat caacacggtt atccacaaag cttgtgtata gattttctac
    48121 aataggaaaa ttgccgacag agacataatg attcgatata ccacaattcc gaaaaaatat
    48181 cgccaaaatc aaacagaata tttcgaaatc aaaaagactt gaccttacca aacgccaact
    48241 tcagtataaa acctgctttt acaggcatgg ttatttgcca gcagacccga ttgctgatag
    48301 gatttcgtgt ggagcagatc gaacattttt ttcaagtttt cccttgtttc caaaactttt
    48361 ataatttttt gaaaacatta aacttaaatt atttttttcg gtttgattta gaaattttcg
    48421 tttttgctta ttatttttca caaacgaaaa taaaggggtt ggctacaccc tccctgccga
    48481 ttaaacactc aacataaagg atagatacta tgtccaccca attacacgat gttgacccta
    48541 tcgaaaccca agagtggctg gacgcgttaa gctccgtcct cgaatatgaa ggcggcgaac
    48601 gcgcgcaata cctcttggaa aacctggtca aatactgccg cgacaagggc gtacgtatgc
    48661 cacacggcac gaccacaccg tatttgaata ccgtttcggt tgaaaacgaa aaaggcattc
    48721 cgggcgacca aaacatcgaa caccgcatcc gcgcattcgt gcgctggaac gccgccgcca
    48781 tcgtattgcg cgccggcaag aaagatttgg aactgggtgg gcacatcgca tctttccaat
    48841 ctgccgccac catgtacgaa gtcggtttca accacttttg gaaagccaaa ggcgaaggcg
    48901 aagaaggcga tttggtcttc ttccaaggtc acgtcgcccc gggcatctat gcacgcgcat
    48961 tcgtcgaggg ccgtctgacc gaagaccagc tgaacaactt ccgccaagaa gtggacggac
    49021 acggtctgcc ttcctatccg cacccccacc tcttgcccga cttttggcag ttcccgaccg
    49081 tatccatggg cttggggccc atcatggcga tttatcaggc gcgtttcctg aaatacttgg
    49141 aatcgcgtgg tttggcaaaa accaaaggcc gtaaagtatg gtgtttctgc ggcgacggcg
    49201 aaatggacga acccgaatct caaggtgcaa tcgcactggc tgcacgcgaa ggcttggaca
    49261 acctgatttt cgtcatcaac tgcaatctgc aacgcttgga cggtccggta cgcggcaacg
    49321 gcaaaatcat ccaagaattg gaaggcaact ttgccggcgc cggctggaat gtcgtcaaag
    49381 tcatttgggg ccgccgctgg gaccgcctct tggcgaaaga caaagacggt atcctgcgcc
    49441 aacgtatgga agaatgtttg gacggtgact accaaactta caaatccaaa gacggcgcgt
    49501 atgtgcgcga acacttcttc aatacgcccg aactgaaagc attggttgcc gatatgaccg
    49561 atgagcaact ctgggcattg aaccgcggcg gccacgaccc gcaaaaagtg tacaacgcct
    49621 acgaccgcgc agcgaaccat gccgacggca aacctaccgt catcttggcg aaaaccatta
    49681 aaggttacgg tatgggcgca tccggcgaag gtcagaacgt tgcccaccaa gccaaaaaaa
    49741 tggacaaagc gtccctgaaa caattccgcg accgctttga cattccggtt accgacgaac
    49801 aaatcgaaag cggcgatctg ccttacctga cttttgcccc cgatacggaa gaatacaaat
    49861 acctgcacgc acgccgcgat gctttgggcg gctacctgcc gcaacgcaaa ccgacgcagg
    49921 aagtattgga agtgcccgag ctgtcagcat tcgacgcaca actcaaatcc agcggtgaac
    49981 gcgagttctc gaccacgatg gcattcgtcc gcatcctgtc cactttgctg aaagacaaaa
    50041 aaatcggcaa acgcgtcgta cctatcgttc ccgacgaaag ccgtactttc ggcatggaag
    50101 gtatgttccg ccaatacggt atttggaatc cgaaaggtca gcaatatacc cctcaagaca
    50161 aagaccaact gatgttctat aaagaatccg ttgacggtca aatcttgcaa gaaggtatta
    50221 acgaaccggg cgcgatggcc gactggattg cggctgcaac cagctacgcc aacagcaact
    50281 tcgcgatgat tccgttctac atttactatt ctatgttcgg tttccaacgt atcggcgact
    50341 tggcttgggc ggcgggcgat atgcacgcgc gcggcttcct gctgggcggt actgccggcc
    50401 gtacgacgct gaacggcgag ggcctgcaac acgaagacgg ccacagccac atccaggccg
    50461 acctgattcc gaactgcgta tcttatgacc cgactttcca atacgaagtc gccgtcatcg
    50521 tacaagacgg tctgcgccgt atgtatgcca ataatgaaga cgtgttctac tacatcaccc
    50581 tgatgaacga gaactacacc catccggata tgcccgaagg cgcagaacaa gacatcttga
    50641 aaggtatgta cctgctgaaa gccggcggca aaggcgataa gaaagttcaa ttgatgggct
    50701 ccggtaccat cctgcaagaa gtcattgccg gtgccgaatt gctgaaagcc gacttcggcg
    50761 tggaagcaga catttggtct tgcccgtcct tcaacctgct gcaccgcgac gctgtcgagg
    50821 tagaacgctt caaccgcctg catccgctgg aagccgaaaa agtacctttc gttacttcca
    50881 aattgcaagg tcatgacggt ccggttattg ccgctaccga ctatatccgc agctatgctg
    50941 accgtatccg cgcctacatc ccgaacgact accacgtctt gggtactgac ggcttcggcc
    51001 gctccgacag ccgcgccaac ctgcgccgct tctttgaagt ggatcgctac aacgttgccg
    51061 tggcagcatt gagcgcattg gcggaacaag gcaaagtcag caaagaaacc gttcaacaag
    51121 ccattgagaa atacggcatc aaagccgatt cagctcctag ctggaaacgc tgattgatgt
    51181 ttcagacggt ctgtttgccc cattccgaca tcaggccgtc tgaaaaccga atgcccgaat
    51241 ggtttgagca gacaaaccgt accgatgccg cctgaagcag ctttcagacg gcatccaact
    51301 gaacaagatt aaaggaactc aaatgagtat cgtagaaatc aaagtccccg atatcggcgg
    51361 tcacgaaaac gtcgacatca tcgccgtaga agttaaagcg ggcgacacca tcgccgttga
    51421 cgacaccctg attacactgg aaaccgacaa agccacgatg gatgtgcctg ccgatgcggc
    51481 cggtgtcgtg aaagaagtaa aagtcaaagt cggcgacaaa atctccgaag gcggcgtaat
    51541 tttgaccgtt gaaaccggtg ccgccgctgc cgaagccgct cctgctgctg ccgaagcaca
    51601 acctgcacct gctgccgcac ccgttgccgc aggcggtgca accgttcaag tagccgttcc
    51661 cgatatcggc ggccataccg atgtggatgt catcgccgtt gaaatcaaag tgggcgacac
    51721 cgttgccgaa gacgacacgc tgattacttt ggaaaccgac aaagcgacaa tggacgtacc
    51781 ttgtaccgct gccggtgtcg ttaaagccgt attcttaaaa gtcggcgaca aagtgtccga
    51841 aggctctgca attatcgaag tagaaaccgc cggctctgcc gcagcagccc ctgcgcctgc
    51901 cgctcaagct gccgcacccg caccggctgc cgctccggtt ccggctgctg ccgccgcgcc
    51961 cgcaccttct gcacctgccg ctgccaaaat cgacgaggcc gctttcgcca aagcacacgc
    52021 cggtccttcc gcacgcaaac tggcgcgcga attgggcgtg gatttgggcc aagtcaaagg
    52081 caccggcttg aaaggccgta tcatgggcga cgacatcaaa gcctttgtga aatccgtgat
    52141 gcagggcggc gcggcaaaac ctgccgcagc cagcgcatct ttgggcggcg gtctggactt
    52201 actgccgtgg cctaaagtgg acttctccaa attcggcaat gtcgaagtta aagaattgtc
    52261 ccgcattaag aaaatttccg gtcaaaacct gtcccgcaac tgggttgtga ttccccacgt
    52321 taccgtacac gaagaagcgg acatgaccga gctggaagaa ttccgcaaac agctgaacaa
    52381 agaatgggaa cgcgaaggcg tgaaactgtc cccgttggcg ttcatcatca aagcctctgt
    52441 ttccgcgttg aaagcattcc ccgaattcaa cgcctcactg gacggcgaca acctggtgct
    52501 gaaaaactac ttcaacatcg gtttcgcagc cgatacgccg aacggcttgg ttgttcccgt
    52561 catcaaagac gtggatcaaa aaggcttgaa acaaatcagc caagaattga ccgaattgtc
    52621 caaaaaagcc cgtgaaggca agctcaaacc gcaagaaatg caaggcgcgt gctttaccat
    52681 ttccagctta ggcggcatcg gcggcacagg cttcacgcca attgtgaacg ctcccgaagt
    52741 cgccatcttg ggcgtgtgca aatcccaaat caaacctgtt tggaacggca aagagtttgc
    52801 cccgcgcctg atgtgcccgt tgagcctgtc cttcgaccac cgtgtcatcg acggtgcggc
    52861 cggtatgcgc ttcaccgtat tcttggcgaa gctgttgaaa gacttccgcc gcattaccct
    52921 gtaacccgat cggcttcaga cggcatagcg gcctgtgccg tctgaaaagg aagtttgaac
    52981 atcattcaga aagatgagac atgagcttag ttgaattgaa agtgcccgac attggcggac
    53041 acgaaaatgt agatattatc gcggttgaag tgaatgtggg cgataccatc gccgttgacg
    53101 acaccctgat taccttggaa accgacaaag cgacgatgga cgtgcctgcc gaagttgcgg
    53161 gcgtggtcaa agaagtgaaa gtcaaagtcg gcgacaaaat ctccgaaggc ggcttgattg
    53221 tagtcgttga agccgaaggc gcggctgcct ctcctaaagc cgaagcacct gttgctgccc
    53281 ctgcgcaaga agcacccaaa gctgccgctc ccgctccgca agccgcgcaa ttcggcggtt
    53341 ctgccgatgc cgagtacgac gtggtcgtat tgggcggcgg tcccggcggt tactccgctg
    53401 catttgctgc tgccgatgaa ggcttgaaag tcgccatcgt cgaacgttat aaaaccttgg
    53461 gcggcgtttg cctgaacgtc ggctgtatcc cttccaaagc cctgttgcac aatgccgccg
    53521 ttatcgacga agtgcgccac ttggctgcca acggtatcaa ataccccgag cctgaactcg
    53581 acatcgatat gctgcgcgcc tacaaaaacg gcgtggtttc ccgcctcacc ggcggtttgg
    53641 caggtatggc gaaaggccgt aaagtggatg ttatccaagg cgacggccaa ttcttagatt
    53701 cgcaccactt ggaggtatcg ctgactgccg gcgacgcgta cgaactggca gcccctaccg
    53761 gcgagaaaaa aatcgttgcc ttcaaaaact gtatcattgc agcaggcagc cgcgttacca
    53821 aactgccttt cattcctgaa gatccgcgca tcatcgattc cagcggcgca ttggctctga
    53881 aagaagtacc gggcaaactg ctgattatcg gcggcggtat tatcggtctc gagatgggta
    53941 cggtttacag cacgctgggt tcgcgtttgg atgtggttga aatgatggac ggcctgatgc
    54001 aaggcgcaga ccgcgatttg gtaaaagtat ggcaaaaaca aaacgaatac cgttttgaca
    54061 acattatggt caacaccaaa accgttgcag tcgagccgaa agaagacggc gtttacgtta
    54121 cctttgaagg tgcaaatgcg cctaaagagc cgcaacgcta cgatgccgta ttggttgccg
    54181 ccggccgcgc gcccaacggc aaactcatca gcgcggaaaa agcaggcgtt gccgtaaccg
    54241 atcgcggctt catcgaagtg gacaaacaaa tgcgtaccaa tgtgccgcac atctacgcca
    54301 tcggcgacat cgtcggtcag ccgatgttgg cgcacaaagc cgttcacgaa ggccacgttg
    54361 ccgccgaaaa ctgcgccggc cacaaagcct acttcgacgc gcgcgtgatt ccgggcgttg
    54421 cctacacttc ccccgaagtg gcgtgggtgg gcgaaaccga gttgtccgcc aaagcatccg
    54481 gccgcaaaat caccaaagcc aacttcccgt gggcggcttc cggccgtgcg attgccaacg
    54541 gttgcgacaa cggctttacc aagctgattt tcgatgccga aaccggccgc atcatcggcg
    54601 gcggcattgt cggtccgaac ggtggcgaca tgatcggcga agtctgcctt gccatcgaaa
    54661 tgggctgcga cgcggcagac atcggcaaaa ccatccaccc gcacccgacc ttgggcgaat
    54721 ccatcggtat ggctgcggaa gtggcattgg gtacttgtac cgacctgcct ccgcaaaaga
    54781 aaaaataaat ccgactgaat aaacagccga taaggtttat ttgagcaaat gccgtctgaa
    54841 atgttcagac ggcattttct attttacagc ggattaaaat atttcttccg g
//
LOCUS       DAXIFD010000002        39056 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.002, whole genome shotgun sequence.
ACCESSION   DAXIFD010000002 DAXIFD010000000
VERSION     DAXIFD010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 39056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39056
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.002"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..293
                     /locus_tag="ACFOCN_000047"
     CDS             <1..293
                     /locus_tag="ACFOCN_000047"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969272.1"
                     /translation="PVFGFRLSGGKGILQRSQLEQKRTALIQGGYVFWRKRWDSTKFY
                     FIDLNIFISYENLIYHKNSHIQKSWSNYCITLLEECRLKCFRTAFPKLPEKS"
     gene            322..453
                     /locus_tag="ACFOCN_000048"
     CDS             322..453
                     /locus_tag="ACFOCN_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969273.1"
                     /translation="MQNQNTRPVKIELKGEAGKRVLLAAARRIAKTHQKAVKALADK"
     gene            450..818
                     /locus_tag="ACFOCN_000049"
     CDS             450..818
                     /locus_tag="ACFOCN_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HFC6969274.1"
                     /translation="MIDGELVALIHQTVLADEAGLKGRADMACLDGALSRIANWRQYE
                     NLEDIYEIAALYAQAIAKAHAFPDGNKRTALLTMLTYLDLQGISIAADQGLDDLIVSL
                     AAGETDFKQLAETLRRLDKE"
     gene            1151..1747
                     /locus_tag="ACFOCN_000050"
     CDS             1151..1747
                     /locus_tag="ACFOCN_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HFC6969275.1"
                     /translation="MSVIALTSLFVSVFTLFYIFRHSVQFNLWGAAEWLMFWQLTVVS
                     VTAVIALGTIFINKKTSKQKATLDVILNDYQDAQFVEADNHISPYIRGTAVDDNNARI
                     DLYEIYQNKGGQWEKERGHLLTVINRHEFYACAINSGVLDEDLFKRLHCTNFIKLWNA
                     VSPLVMKIREEERKDTIFRELEILVALWKANPLKASDL"
     gene            2106..2342
                     /locus_tag="ACFOCN_000051"
     CDS             2106..2342
                     /locus_tag="ACFOCN_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HFC6969276.1"
                     /translation="MLRVQKWGNSAAVRLPADMLKQLDFKIGDALVAEVHNGELRVRA
                     ARRFRLADLLAEMEETPPRVEGWEILDDVGNEVV"
     gene            2344..2691
                     /locus_tag="ACFOCN_000052"
     CDS             2344..2691
                     /locus_tag="ACFOCN_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6969277.1"
                     /translation="MYIPDKGDIFHLNFDPSSGKEIKGGRFALALSPKAFNRATGLVF
                     ACPISQGNAAAARSSGMISTLLGAGTETQGNVHCHQLKSLDWQIRKASFKETVPDYVL
                     DDVLARIGAVLFD"
     gene            complement(2744..3253)
                     /locus_tag="ACFOCN_000053"
     CDS             complement(2744..3253)
                     /locus_tag="ACFOCN_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969278.1"
                     /translation="MDILLKYWKPVGVLLLIVLIFTAWHFDRAEKYRMGREAAAAEIS
                     NRLKDGYIEQAKQARSAEQKAAAAFAERQTKLEEEKQNAEKTVAAMRLELNRLRHYAA
                     AQNRNRNLPATTTAATASDGASDSQGWLLFGQCAEKYAGLAETADGHAADLREWQAYG
                     HAVSSQRAE"
     gene            complement(3265..3738)
                     /locus_tag="ACFOCN_000054"
     CDS             complement(3265..3738)
                     /locus_tag="ACFOCN_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-Ala-D-Ala carboxypeptidase family
                     metallohydrolase"
                     /protein_id="HFC6969279.1"
                     /translation="MQVTKNFSLRELTRSETARRAGVPNEPSPADMDNIYYTAQQLEK
                     IREYVGRPIIVTSCFRSERVNKLVGGSPTSAHRHGLAADCDASGMTSPAFAKLLIKMR
                     DEGALKFDQLILEFPERGDGAWVHIGFRRNSPQRNQILTATKKNGKTVYLPGLHP"
     gene            complement(3877..4152)
                     /locus_tag="ACFOCN_000055"
     CDS             complement(3877..4152)
                     /locus_tag="ACFOCN_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969280.1"
                     /translation="MKLLLILSAAPSLISAYLMICRLNGRKWSALSPEAWAYLAFLGG
                     AIYTFYIVFAYGLTPSLGKFMMDIAACVYFGSRSVRVVKWRHRHGLK"
     gene            complement(4149..4574)
                     /locus_tag="ACFOCN_000056"
     CDS             complement(4149..4574)
                     /locus_tag="ACFOCN_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969281.1"
                     /translation="MSEPIITPAAVYIFGGVVGAGYLLGMPVDAVVLGAVASAAVTMI
                     SEPKSRWMVVAYIVIGGLLGGAFAPPLTHFLIGEVVGSHPSLGEQRIQFAHAFAPVVV
                     GLLWQVLLRFARAVWPSFEKHADDIVEWLLNLLPWRPKK"
     gene            complement(4638..5009)
                     /locus_tag="ACFOCN_000057"
     CDS             complement(4638..5009)
                     /locus_tag="ACFOCN_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969282.1"
                     /translation="MSKDKNQITVGINREIIDTETDSSAEFHVIRHVSLDYATGFNVV
                     LLDSYVRKSTFERRGRSVGSMQLNIPGVPPRGTDVLDWAYQAVVAAVEGGAVDAYGQP
                     ISANSLTGAELVYADLPEAAI"
     gene            complement(5077..5283)
                     /locus_tag="ACFOCN_000058"
     CDS             complement(5077..5283)
                     /locus_tag="ACFOCN_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969283.1"
                     /translation="MKAVRDIALWLAVTVWINFFPDSYRYDTVPQGRHGYWHADHPWY
                     PYARFLLPLFLACILFYRHFRKRK"
     gene            complement(5300..5746)
                     /locus_tag="ACFOCN_000059"
     CDS             complement(5300..5746)
                     /locus_tag="ACFOCN_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969284.1"
                     /translation="MDQAKRTAYVKIINALFDGAVKVQPSQITETVVDMVDKMFDEIA
                     TCHERIRPMAVLADGIAGSIVKLAPNEIPLIFGNSSFGSYLKSKTRDEVFKVLKQSKV
                     NNAGKVLEAFYESWLKYTAKDRRLKVCIVTAQSRWRSRFEMELLGI"
     gene            complement(5817..10082)
                     /locus_tag="ACFOCN_000060"
     CDS             complement(5817..10082)
                     /locus_tag="ACFOCN_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFC6969285.1"
                     /translation="MGGKSGGGQRTPYEAPNSLSSAQSLRIIDAVSEGVVSGFANGDD
                     APFKSVYFDDTPVQNSDGSYNFNGVTGYFQRGEQDQSYVPGFDASERTVAVSAAVKQN
                     QPMVRAVTDELVSRLRITVAVERNAQVEDNGDTVPADTLMRVELINSNGVQASNQVRF
                     NEKSSGTYYQDVEFDVVPQVPFNIRVFRISPDSKTDKVSNNTYFSSYVEIVDAKLSYP
                     HTAFAALSIDSAQFGNQIPRRNYLMKGRLVKVPSNYNPETRQYTGGTWDGSFKTAWTN
                     NPAWVFYDVLTQPRFSTLARRLNVADIDKWSLYQIGKYCDEPVDDGFGGKEPRFVCNA
                     YITDLMQAGEFLNNLASVFTGLPVWNGQQVSVVMDADADPVAQYTNANVKDGLFNYAG
                     AALKSIHTAVHVQYIDKYDGYRAKTEYVADNEAIARYGLNIKQITAFGCDSRGQAARF
                     GAWTLQTELRQQNAVTFEIGREGLKHLPYDIVQIMDNQYAGAELSGRVAAISGNVLTL
                     DRPVSDAVGALVFYSEGGSLKSAKITAAAGNKVTLEREVPLQAGDTWVLSGKVKPRLY
                     RAIGIKENTDAGTYTVTALLHDPKKYAAVDSFAHFDHEITTLHNTAPVLTDAAVNTDG
                     GTVVVTWDNLAANGQVLTYDIKIYRNNSLYRHIPDAQTAEIRLENLPNGNYRAEIRGR
                     NARGVLSAPLVKAWSIDYTVTGLRTTPKTLSVTVDWVLPQTVVSDLVFELWYSKTNNL
                     QTATKLASLAYPQNSYTLTGVGVADVYYFWVRIRDIAGNTGEFTAAVQGRADNNPAPI
                     VQQIQGAIGKSALSRELIDTLNRDMAAAAGLKVSAEAAERAKALQEEARARTAAIQAE
                     SSARTAELARKSSEIGTRIAATEAVNEQQAQQIQTVTSAQGNTAAGLEAEKKARTDGD
                     RAEAQARETLAVRLGNAESGISALRETVTRQDAARSSEINTLTAKLENVEVGGRNYAL
                     STGTAGKVLTASENNQTKTVTIDVSSALDLKQGDSLIISCDIELVNATSPHGKPYPRI
                     GAEFSVIYADNSVGYFAAWYGEAVSGTTKTLKQRIVAKHTVAKEVKALRSFIVQARYQ
                     TSESIKVSNVKLERGTVATDWSPAPEDSNADTSALTTLSAKVQQASSAVAEIGGKIQS
                     LYTLKTEAIAGGRRAVAGVAVGADGKTGSGEILLMADKVAYVDPKDKTVTPAFVTVIE
                     NGKAKQALNGDLFATGSILAKHIAANQTIEAPTLNGATVNAGLIKGGTIRGARIEAVD
                     LEAANIIGDVVAVRTFELKQSPLGYQELICQIPDSRKTRRTVIVPPVFAVAENGAVVS
                     LQLHMDGVIQREVTIQSPEKRIARNEKFSVWVPGPPPLYIRTPQEVPLSFSVPFHLPK
                     TGSISFQKGIDGAAHSLHILCRISGNFDYSPLGDLSGIVCLIV"
     gene            complement(10218..10940)
                     /locus_tag="ACFOCN_000061"
     CDS             complement(10218..10940)
                     /locus_tag="ACFOCN_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HFC6969286.1"
                     /translation="MITVCLYGGLREYGRRFVLHVETPAEALHALFTQIKGLRQRIRD
                     GVYQVRFDGKDQSEETIGSVFRRPADGVLHIVPRVQGAGKNGGLIQTIVGVVLIVVGA
                     YTSWASGAQLIAVGIGMVAGGVAQMLTKQPKLDADGKGVEESKNSAFSNLANTTAQGR
                     PVPLAYGLCYCGSRVVSQGVQSRRIEPSSTAASSGAVLNLGLSKTFVQGVAATAPNGQ
                     KYRTDFSDDSVRARNYKAAFSG"
     gene            complement(10937..11692)
                     /locus_tag="ACFOCN_000062"
     CDS             complement(10937..11692)
                     /locus_tag="ACFOCN_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6969287.1"
                     /translation="MMDLDLLSEEARREMLACAEEAVPSEMCGVLVFSYEGYEFLPLS
                     NCAENPHETFEISADDWMAAERVGEIVAVVHSHPRGEPFLSGADRWMQVETGLPWILV
                     TQGRLKLFRPVPHLRGRVFEYGKTDCGALVRDAFMLMGLVFPDHPRGDMDEDAAAGFW
                     EKHLENCGFSRVSDGLCAGDVVLTATGGHASHAVLYLGNDWMLHHAYNQLSCRVPYTR
                     YWADVTHSVWRHPDFEPAMMQALENDFTHMEQA"
     gene            complement(11689..12411)
                     /locus_tag="ACFOCN_000063"
     CDS             complement(11689..12411)
                     /locus_tag="ACFOCN_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030430 - host cell cytoplasm [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0046718 - symbiont entry into host cell
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HFC6969288.1"
                     /translation="MNPRIKAMSGVMLQALSAAQQDVLVDLWQVDLRPLGGRVFYFCN
                     QVNERGTAVVWQGQAYEPYPIKADGFESTSQGAGNRPTLTVSNLLGLITGAADQFGQL
                     VGVLVVRRQTYAKFLDAVNFQSGRNPTADPMQEVVGKYLVERMTALNAETATFELAAP
                     SESDGSVIPARIMLANTCCWQYRGEGCGYTGRAVADRFDMPTDDASKDVCSKTLTGCR
                     ARFGATAVLPFGGFPSSDKVTT"
     gene            complement(12471..12740)
                     /locus_tag="ACFOCN_000064"
     CDS             complement(12471..12740)
                     /locus_tag="ACFOCN_000064"
                     /inference="COORDINATES: protein motif:HMM:NF017726.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFC6969289.1"
                     /translation="MTETFRWRVASDNKAVHKFDVRSVRFGDGYEQRQPKSLKPKLRS
                     WEIKIVGQKALMGEIKAFFDARRGVEPFNWRPPDGVPVLVKVSEY"
     gene            complement(12762..15980)
                     /locus_tag="ACFOCN_000065"
     CDS             complement(12762..15980)
                     /locus_tag="ACFOCN_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HFC6969290.1"
                     /translation="MNNETKIYITAETGGVVSGVEKAKQSIKSLGDVASSQGRRISDG
                     LVHSGDGAEKSSTVVSAASKRTERSLASLENAIRRDIAVKIAGGKANREYYEELARQR
                     GIDIARLNPLLSQLDRHNTQTNRATQSVKQFNNALRQTPAQITDIVTQLAGGQSPFLI
                     MIQQGGQLRDMYGGFGGMLKGLATVISPMRLAVAGLGGGIAALGYAMYQGAEESCEYR
                     KALILAGDAAGITADRMQEIAVSVGAATGGYADARAAITALVSSGKVATDNYEQFARS
                     ITLQSQATGQSIDDLVEKYTEIAKDPLKAVVSLSATYRTMTADVYQQVKALQAQGREQ
                     DAVALVQRKFSEESEDMAKRVLGNLGLIERAWKDIKESASEAWDAVKSIGRDKTKLDE
                     IAALDSFISQIETSKKHPVTQLFWGEEGERKLQEAYARRARLRAEIDKEAAAAETLRQ
                     KQKQNQNRTEGIAELEAVSERYATREQQRQRELLKNDKARKKALDGITDAKKRQEIIN
                     KHAANAKLINESFAEKKHERQKEKTDKTSYPTVSNGLRIKPGAEAGGKALGGTYAFAH
                     AMQQMLGDRLFRFGAFRDRYHIGKNSLHNSGLAFDATPSPGMGMKQKQEVVAQMTRYL
                     ESLGFKNGQDFNLKLELAGQRNKNGTVATGDHWHFNWRSREAAARFAGGVEGQVKNMA
                     HLGLFKGVEKEPLSGYEKWHEDFNRRAAEAGAKRVLEILNGNRAIGEQLKLLSDPTFG
                     DWTLKQQADARELAEKADAQDSLTAASKKYSDIVKQMTDDSKEKLDDRLFEISLIGKT
                     REEIEKLTLARLWDRQIAKAREEGAPLESIDLLERGKAEGMSNLSQMQKARADSDNDW
                     RGGIESGLKSYIDSFGTMRQAMENATVQTFDKMGDALADFVATGKLDFRSLTVSILQD
                     LSKMLIKMAIVNAMKSALGYADGGIVGGGSTQFDALFSGGGYTGYGGKYEPAGIVHKG
                     EVVFSQRDVRNHGGVAAVERLRLNGYAGGGAVGLPSVLTGVRSAGAGSMQVNITINRD
                     GSTESDSSADTEMAKHLAAAIPGMVEQWYVKNVYRENGTYHK"
     gene            complement(15973..16245)
                     /locus_tag="ACFOCN_000066"
     CDS             complement(15973..16245)
                     /locus_tag="ACFOCN_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1799 domain-containing protein"
                     /protein_id="HFC6969291.1"
                     /translation="MNVFGFSADDFSEKETTFGVWPCNWQAVQLFIGVSTQWRIGMSG
                     ATGLDYSAVAAVMECGNIKSKKRKALLEKVRLMELEVLSMWAGEHE"
     gene            complement(16293..16604)
                     /locus_tag="ACFOCN_000067"
     CDS             complement(16293..16604)
                     /locus_tag="ACFOCN_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HFC6969292.1"
                     /translation="MAKLTLKPDATFRHTVKIPVPGAEPADVEFEFKARGRKAMKEFT
                     EKHKDGWTADTVLDCVQGWDLEEAFDRQNVEILLDSYPMAVFAIVNGYVEEVFNAREG
                     N"
     gene            complement(16668..17309)
                     /locus_tag="ACFOCN_000068"
     CDS             complement(16668..17309)
                     /locus_tag="ACFOCN_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HFC6969293.1"
                     /translation="MAVKLPNGATVHIATALAAEKKATVATNAAECVLTVAGHGFANG
                     DLVLFKSGWGKLNERVFQIGDVKADTFKLTGIDTSNADEFPAGSGIGAVQKITDWVQV
                     SQIVEFSTSGGEQQYVDFGFLEDDFDQQIPSTKSAMSMSIKIADDTSLSGYKAAAKCS
                     DKGGKWPLKVVLKGGGLICYNGYPSMNKTPELVRNQVMAVTLSYAISGEVNRY"
     gene            complement(17341..17760)
                     /locus_tag="ACFOCN_000069"
     CDS             complement(17341..17760)
                     /locus_tag="ACFOCN_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969294.1"
                     /translation="MTSRLTEIRNAATDVLKTKFQRVYSGRGFAPAQSQLPCVVVYVD
                     RRRTEQETFDFPPTYRHTVRLVTLVCVQAASGADELAEEMLSLIGQLFAEHSDLGVGD
                     LENLVPDLLNIDSDESGEAVTVYYQQGWQAIYFDTAV"
     gene            complement(17741..18043)
                     /locus_tag="ACFOCN_000070"
     CDS             complement(17741..18043)
                     /locus_tag="ACFOCN_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969295.1"
                     /translation="MFNEPLNVFTNPADFGETVMIGGKEVNAIFDREFITDSGFGVAV
                     ANADPQIIVTEDDLPEDVKSVVVTVRGKRYAVAETDFDGCGMVVVQLRAIHDKPTY"
     gene            complement(18036..18263)
                     /locus_tag="ACFOCN_000071"
     CDS             complement(18036..18263)
                     /locus_tag="ACFOCN_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969296.1"
                     /translation="MAKIKIIPTRSFFDGEQTFATGKKYSVDESAAAVYIREGWAAEA
                     PAKEAESPVADGGEAEDSGNASGEGGEDGSV"
     gene            complement(18321..20213)
                     /locus_tag="ACFOCN_000072"
     CDS             complement(18321..20213)
                     /locus_tag="ACFOCN_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HFC6969297.1"
                     /translation="MKKMKPDKAQMQQMSRFAVFQRESVDVEKRTVEVAFSSEESVRR
                     WFGDEVLSHAQGAVDLSRLNDGGAVLFNHDWDDQIGIIERAWIDADKRGRALVRFGNG
                     TKATEKFQDVQDGILRHISVGYRVEDMVLDNPDTDDEGYRYIVTRWMPYEISFVTVPA
                     DPTVGVGRSVEPFIENPVNPTPEKGNRNMDKNQTPTTVETSAAAIPAAAATDTNNTAE
                     RGMQNERARVSELLAIGRSYAAHGGIEAAEKVIKEGGSEAQLRAAIMANMQTKPTVTA
                     GEIGMTDKEQREFSLLRAMSAAATGKWDKAGLEREVSEELEKRHGRAAAGFFVPTDLI
                     ARAYSKGNAANGGNVIENDFREDLFIELLRNRLAVAQLGATVLDGLVGDITIPKHLTG
                     NTVQWVDENGSATESNATFGQMSLKPKTVTANTELSRKFILQSSLSAEQFARSELLKA
                     MMLGIDLAAINGKGTGNEPTGILNTAGIGAVEIGANGGAPEWKHIVALESAIAAANAD
                     IGDLAYITNARVRGLLKTKLKADGVSGYIWQDGATPLNGYRCAVSNQIPSNLTKGTAA
                     NKCSPLIFGNWSDLMIAHWGVLDVIVDPYTKSTTGAVRITTLQDVDIAVRHVESFAAI
                     KDIAAA"
     gene            complement(20194..21756)
                     /locus_tag="ACFOCN_000073"
     CDS             complement(20194..21756)
                     /locus_tag="ACFOCN_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HFC6969298.1"
                     /translation="MAKQSNAAPKKRGFFARLFGRREAVPKTARRNFAGARPVGSLAS
                     WQPQNWSADALARSDLDRLRTRARSLARDNDYMRKFLNMVESNVIGRDGFALQMRVLL
                     DNADKPDALANKAIEAAFSRWARRGVCDVTGQMSFTDLQRLLIRSVARDGEVLIRHIS
                     GFDNDYGYALQVLDIDRLDTGYNVPQQNGRNAVRMGVELNSYSRPVAYWLRTAHPGES
                     YGQTNTGNLRERVPAEQISHIFLHDRPEQRRGFPWVASAIIGLQNLSGYQEAAIIAAR
                     VGASKMGFFKQTEDADNFMPPIDGQEVDNGRGSIDLIDSVEPGTFHELPQGYDFTPFD
                     PDYPHANYDAFVKASLRGIASGLNVAYHSLANDLEGVNFSSIRSGTLEERDTWMTLQN
                     WFADAFLYDVFDRWIEAALLMGAIKMPSGKSLPAGKLDKFKACNWQGRRWSWVDPLKD
                     INAHKEAVALAVKSRRDICAEMGLDFEDVITQIEQENQMLAGKGIIADVKPAASAAEP
                     ESEDNPNEENEA"
     gene            complement(21765..22019)
                     /locus_tag="ACFOCN_000074"
     CDS             complement(21765..22019)
                     /locus_tag="ACFOCN_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969299.1"
                     /translation="MSGHDYAVELEEAREILNSLRKAYKEHAAGRGMTKRYKIKDREM
                     EFSSLADLLKQIRFWQQEIKRLEAAAGVSPRRSGRIITRF"
     gene            complement(22006..22392)
                     /locus_tag="ACFOCN_000075"
     CDS             complement(22006..22392)
                     /locus_tag="ACFOCN_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HFC6969300.1"
                     /translation="MEKQDNITPPHYRSRAVECIEFTERLNFCMGNAFKYVWRHREKN
                     GAEDLKKARWYLQRQLDSCAVMHLLEPEEYAELMDGLEKCELDDLMQHVLEEILYHAF
                     FESEDSLLAAMCGVSELLKGYGDERT"
     gene            complement(22395..22604)
                     /locus_tag="ACFOCN_000076"
     CDS             complement(22395..22604)
                     /locus_tag="ACFOCN_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969301.1"
                     /translation="MYDVFKTRAAELSGAFCSLDFWLCHKFVPLCHALCHFLTRRDID
                     TLIEEGLVEERFEQGVSKFYAKEAV"
     gene            complement(22621..25467)
                     /locus_tag="ACFOCN_000077"
     CDS             complement(22621..25467)
                     /locus_tag="ACFOCN_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5906 domain-containing protein"
                     /protein_id="HFC6969302.1"
                     /translation="MNKKYATKAEINAAAHDRWREVLEACGIPSEILDKKHHPCPSCG
                     GSDRFRFTDGSGSSRGSGVWICNQCKPEGGSPFDLLMDVCGYSFNEARDKVASLLGLA
                     HGDLVDKAPKLLPPPAPVKEEERDLWKPIVPVPEYALNSMSFGNGFRKSDDLIFKSVF
                     RDSSSAVLGGVARFRKSDGGKIDLPYTFCEHKKTGEKMWRWRCWDNPRPLYGLDSLVA
                     DPSLPVLVVEGEKCKNAADAQGYNYAVLTWHGGCNNWDKSDWSAVVDRDVVLWPDCDS
                     LRQKLTKKDRDDGVDPESKPFLPRNEQGGMKAMLGIAEVLTKQNCRVWLVNIPAPGIW
                     PHGFDIADAIADGGRICDPSEVLSWMGAADWLVEYVPEAEMPSENSPAPIQDMEPESE
                     QLHESLEATGNQGGAGDVDDEYLAKLQKLKSEFGLVEGKDHGVNRKTGVTYTRKAMTV
                     HFGKDVVDAWYEWGRAPVLTMYEINRLKKDYALIQAVKDDDTQDMMERFIYLDGSASI
                     WDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRG
                     MPIEPKFPIPKEDMPETNYELYRLFPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQ
                     NVGAKMTTAVVMHGHIHGAGKSFFFEEIVKPMYGEYGATYGQEDLESNYTANRSGKMF
                     GIFEEVYTNQQKYNKTGSQKHMITGKTMRVERKFQDAYEEANHMNCVFLRNESHPFKI
                     EENDRRYFVVWPEKKLDKKLRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQGAENEK
                     GYEVIKLEEPVRFDPNTPPPMTAAKQNVISYGRYAWQTFYSEWAGGGIKDLPFCCCIT
                     DDLWLVYKEWCRQNGERETGKTKFLQHIAEKMPRARRWWRTKNKDGDVSCQNWIFKPA
                     GWQAADGLPEMDALGNEVLRFRSAGWRYRGGEEV"
     gene            complement(25582..25929)
                     /locus_tag="ACFOCN_000078"
     CDS             complement(25582..25929)
                     /locus_tag="ACFOCN_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969303.1"
                     /translation="MNRTKTCKECGEIKPITAFPKNGFDRKTGLQKYAPRCRRCHNVY
                     QQDLLYKRREKEFEQKQAVMAALMDAEREKEEAAKARSIAQSLVLAKAACPILHIGLW
                     TEPLFIPQGMLQI"
     gene            26329..27045
                     /locus_tag="ACFOCN_000079"
     CDS             26329..27045
                     /locus_tag="ACFOCN_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HFC6969304.1"
                     /translation="MTMHETTDRLFEIAKEQGVLKPADIAERLNISQQALKNWESRGI
                     AAKALPEVAKAFGVSETWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDD
                     DYVFVPYLKESCFKGGVGTYEIPDYNGYRLPFGKSTLKRKGINPDNVFCCTLTGDSME
                     EKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYGDE
                     NAPLDSLTVIGRVFWWSVLD"
     gene            27148..27573
                     /locus_tag="ACFOCN_000080"
     CDS             27148..27573
                     /locus_tag="ACFOCN_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969305.1"
                     /translation="MNFLGVQGELKVHELHHRTATLCFEWLGEVSAPRRKENYKDLKP
                     NVLYDFDGSGKHFANPDARYLLPVGSSGLILKHIQIDDEDTLLRLWCARNIPMPHRLS
                     KIPMLRQYYLSKAWHEIYAINQHLRKTKLIVDVAYGPTD"
     gene            27804..28004
                     /locus_tag="ACFOCN_000081"
     CDS             27804..28004
                     /locus_tag="ACFOCN_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969306.1"
                     /translation="METITIPKENFDALLNLARTAVALNENFIPKINYGASTIPAAGF
                     AALNEFGIARSTVESLEILKIK"
     gene            28072..28431
                     /locus_tag="ACFOCN_000082"
     CDS             28072..28431
                     /locus_tag="ACFOCN_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969307.1"
                     /translation="METQEKKFVPASKQIPTVNSGWLDRELGEAMSEAVRACLAHGKQ
                     SEITVKLKIQPQNIQSGTVKISHDVATKLPKEKREGGIVFATPDGNIQADDPAQGKLK
                     LKQVPNTSSTLKMVRSN"
     gene            28456..29310
                     /locus_tag="ACFOCN_000083"
     CDS             28456..29310
                     /locus_tag="ACFOCN_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HFC6969308.1"
                     /translation="METQENMIKTALQAAQKPFFEFAPNNTLLVFTPDQDGGWRYKSH
                     PELMQNPYRKCGKFLMHDTASLIKFVQKHKQDGTQIYIDADFKSGRIDVTAVINGHTQ
                     QAPGWLDFYAVYTPQHTTSASNWLNNNAHRMNQMEFSHFLTNNARNIVSKNPGNENSV
                     YPTAAEVLDFALNLEYTEKTTFKQGYREQDGRINFTFQSEDSGQTEKNLKMFERFGIE
                     FTPHQGGASYFVEALLKFRIDKNSGALVLWYELQQIDAVIEQAAKDISEAVQKAFPEI
                     DIYFGIIA"
     gene            29382..29597
                     /locus_tag="ACFOCN_000084"
     CDS             29382..29597
                     /locus_tag="ACFOCN_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969309.1"
                     /translation="MTITEEYSIDIRVTAEQGKNDYGYPTERYGCDIINTDGELLVGI
                     EPEYKTPFAAVRKALICLAKDNLKNAA"
     gene            29633..29893
                     /locus_tag="ACFOCN_000085"
     CDS             29633..29893
                     /locus_tag="ACFOCN_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO1622 family putative holin"
                     /protein_id="HFC6969310.1"
                     /translation="MKYLIRTALLAVVAAGIYACQPQSEAAVQVKAENSLTAMRLAVA
                     DKQAEIDGLNAQIDAEIRQREAEELKDYRWIHGDAEVPELEK"
     gene            29890..30183
                     /locus_tag="ACFOCN_000086"
     CDS             29890..30183
                     /locus_tag="ACFOCN_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969311.1"
                     /translation="MNFQEENENIKNDIEINLLHSAEADSVEAMMDLAVYGLAAMVAK
                     HNKTRGEQLVLQAIAGHMRKLLAALPETESLVQTGKVYRRLEDLIFKTYLPEQ"
     gene            30186..30377
                     /locus_tag="ACFOCN_000087"
     CDS             30186..30377
                     /locus_tag="ACFOCN_000087"
                     /inference="COORDINATES: protein motif:HMM:NF037202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type ISP restriction/modification enzyme"
                     /protein_id="HFC6969312.1"
                     /translation="MNTNQDTIPFGGNLVICCSTGNGGDGRFSCLITDQIPDLNLVRS
                     GQAFPMFIYEYETREKRKA"
     gene            30377..30517
                     /locus_tag="ACFOCN_000088"
     CDS             30377..30517
                     /locus_tag="ACFOCN_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HFC6969313.1"
                     /translation="MDTLLKIIIALSFSGAEALAVWLFITAADAVLRRFPKPSHYRRV
                     KK"
     gene            30514..30723
                     /locus_tag="ACFOCN_000089"
     CDS             30514..30723
                     /locus_tag="ACFOCN_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HFC6969314.1"
                     /translation="MNINELGARIDRPTIRELIAYATCRNRPISNSTLLRMEKDGRIP
                     CRLKTPLTSPVWDTREVLEALGLQQ"
     gene            complement(30781..31698)
                     /locus_tag="ACFOCN_000090"
     CDS             complement(30781..31698)
                     /locus_tag="ACFOCN_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005634 - nucleus [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HFC6969315.1"
                     /translation="MNVSVLNFGNTPVSFRQDGFLNATAIASHFGKLPKDYLKSEQTQ
                     QYISALAENLSVRRKILTEANQIVIVKRGGSEQGTWLHPKLAIHFARWLNPKFAVWCD
                     EQIEILLNGKISDGIKTVTPKPTRALPDGLTGEQIEAVKKLHNALTKSAPKEAQARIA
                     ITLWSAVKSKFGCSYKEVPAEQFPEVLSVMSRVAVENGVLYGEVLDREPLPAPQPALP
                     ISGNALYDLAVAVRYGAWAIQMGRDVSLPLKQLGCKQAVTMWTVWAETRSRLKAAANA
                     LEALNAHADAEHAAKIRPMLPEIRNLSSV"
     gene            complement(32566..33045)
                     /locus_tag="ACFOCN_000091"
     CDS             complement(32566..33045)
                     /locus_tag="ACFOCN_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HFC6969316.1"
                     /translation="MTDNLIQIATPILTVIGVFVAAYGIMRNTENAKKRATIDMIMAE
                     RNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAILTVLNQREFVCAGVLGG
                     ALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQEFEAVARKWKKKPLKTK"
     gene            complement(33481..33861)
                     /locus_tag="ACFOCN_000092"
     CDS             complement(33481..33861)
                     /locus_tag="ACFOCN_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6969317.1"
                     /translation="MPLKFQPRERSVIMCDFRGYEEPEMVKKRPVVVIARNRHNGKLV
                     TVVPLSSTEPVPLADYHHKMSGNPLPDKPHIQCWAKCDMTATVGLARLDRYKPKGRDR
                     CIPIISEEDFQAIKTAVAKAFKLY"
     gene            complement(34016..35212)
                     /locus_tag="ACFOCN_000093"
     CDS             complement(34016..35212)
                     /locus_tag="ACFOCN_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HFC6969318.1"
                     /translation="MAKIITPLSANQVKNAKPRDKLYKLSDGGGLALWVYPTGGRSWK
                     LSFVQDGRQQTISLGRYPDFSLADAREWREEVRRKRAHGENVVNKKVRADFAFEKVAR
                     DWFVRWSKGRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDT
                     LRKTKNSLKMVFAFAVGSGMMEINPVAQIGSGVFERAKTGNMAALSPSELPRLIDFLE
                     QRNEFAVYAGRVRIHPVTRLCIYWLLLTMTRIQEAALMEWSELDGEVWRIPAERKKER
                     RGHDVPLSRAMQWVLDQARALNVNGRFVFESVNFQGHINKESPRVAMQRAGLDTTAHG
                     LRLLARTYLREVLKVDNDVAEKLLAHSLGTRTQTAYNRSELWEERKDALERWGNDVLR
                     LAKNGK"
     gene            complement(35404..35493)
                     /locus_tag="ACFOCN_000094"
     tRNA            complement(35404..35493)
                     /locus_tag="ACFOCN_000094"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(35457..35459),aa:Ser,seq:cga)
     gene            complement(35571..35661)
                     /locus_tag="ACFOCN_000095"
     tRNA            complement(35571..35661)
                     /locus_tag="ACFOCN_000095"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(35625..35627),aa:Ser,seq:tga)
     gene            complement(35744..36523)
                     /gene="yaaA"
                     /locus_tag="ACFOCN_000096"
     CDS             complement(35744..36523)
                     /gene="yaaA"
                     /locus_tag="ACFOCN_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HFC6969319.1"
                     /translation="MFFVLSPAKNLNEKDPAPVSEFTQPDLLAESDILMQQLRELAPQ
                     QIAELMHVSDKIALLNAQRNAEWNTPFTPENAKQAVFMFNGDVYEGMDANTLNTDQIQ
                     YLQGRVRLLSGLYGLLRPLDLIQPYRLEMGTAFANLRGKNLYEFWGDIITNLLNDTLA
                     QAGSNTLVNLASQEYFKSVNTKTLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRY
                     AAEHNITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK"
     gene            complement(36785..37972)
                     /gene="dapC"
                     /locus_tag="ACFOCN_000097"
     CDS             complement(36785..37972)
                     /gene="dapC"
                     /locus_tag="ACFOCN_000097"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009016 - succinyldiaminopimelate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HFC6969320.1"
                     /translation="MNTLLNQLKPYPFARLREAMQGISAPEGLEAVPLHIGEPKHPTP
                     KVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTLNSDTEILPVLGSREA
                     LFSFVQTVLNPVSDGLKPVIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSI
                     SEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK
                     PLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSA
                     MSIPVQRASIAAWNDEQHVIDNRRLYQEKFEWVIPILQQVFDVKLPDASFYIWLKVPD
                     GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVS
                     LYR"
     gene            complement(38048..38500)
                     /gene="dut"
                     /locus_tag="ACFOCN_000098"
     CDS             complement(38048..38500)
                     /gene="dut"
                     /locus_tag="ACFOCN_000098"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HFC6969321.1"
                     /translation="MNIEVEMKVLDERMADVVPVYATKGSAGLDLRACLDEEVVLQPG
                     ETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNR
                     SSEPFTVKPFERIAQMVVVPIVQARFKRVEEFVGSSRGEGGFGSTGLH"
     gene            38643..>39056
                     /locus_tag="ACFOCN_000099"
     CDS             38643..>39056
                     /locus_tag="ACFOCN_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HFC6969322.1"
                     /translation="MTHISSPRNEFIRGIKESSPMLIGLLPWALILGMQGGQKGMSWL
                     EMLLMTGMNFAGGSEFATVNLWAEPLPILLIATVTFMINSRHILMGAALAPHLKEIPL
                     KKAVPALFFMCDESWAMAFSEIQKRKAAGLPAFNMP"
BASE COUNT         9722 a        10752 c         8994 g         9588 t
ORIGIN      
        1 aacctgtgtt tgggtttcgg ctgtcgggag ggaaaggaat tttgcaaagg tctcaacttg
       61 aacaaaaaag aaccgccctg attcagggcg gttatgtttt ctggcggaaa cggtgggatt
      121 cgactaaatt ttatttcatt gatttaaata tatttatttc ttatgaaaat ttaatttacc
      181 ataaaaacag ccatatacaa aaatcttgga gtaactattg cattacacta ttagaagaat
      241 gccgtctgaa gtgttttcgg acggcatttc ccaagctgcc ggaaaaaagc taaaatgccc
      301 gcaaacagac aaggagcagc gatgcaaaac caaaatacac gccccgtcaa aatcgagctt
      361 aaaggcgaag caggcaaacg cgtactgctt gccgccgccc gccgcattgc caaaacccat
      421 caaaaagccg tcaaggcact tgccgacaaa tgatagacgg cgaactggtc gcgcttatcc
      481 atcaaaccgt attggcggat gaagcgggtt tgaaagggcg ggcggatatg gcgtgcttgg
      541 acggcgcatt gtcgcggatt gccaactggc ggcagtatga aaaccttgag gacatctacg
      601 aaatcgccgc cctctatgca caagccatag ccaaagccca cgcctttccc gacggcaaca
      661 agcgcaccgc gcttttaaca atgttgacct atctggattt gcagggcatc agcattgccg
      721 ccgaccaagg gcttgacgac ttgattgtca gtttggcggc gggagaaacc gacttcaaac
      781 agctcgccga aaccctgcgc cggctggata aggaataggc atatccgaca acaatgccgt
      841 ctgaaattca gacggcattt ttattgaaag gcttttttgc aaccgcttta cacaaaggcg
      901 gtttttttat gccgtctgaa agcccttcag acggcatttg tttacacggc aggagtcccc
      961 ccgcctttaa gcaggagagg atgtcaagga tgcctgattt ttaaatcacc ccttgaaaga
     1021 acgggcgcac ggcattaata tacagatatc gacaagcaag gttacaacca ttaaggaaat
     1081 acgatgaaat acaaaaatga gggttttaat ggctggtaag gtgcggaaac aaataaaaca
     1141 aggaggttgg ttgtcagtaa ttgccctaac ctccttgttt gtatctgtat tcactttatt
     1201 ttacatattc aggcacagcg tacagtttaa cctatggggg gcggccgaat ggctgatgtt
     1261 ttggcaactg accgttgttt cagtaaccgc cgtcattgca ctggggacaa tattcatcaa
     1321 taagaaaact tcaaagcaaa aggcgacatt agatgttatt ttgaatgatt accaagatgc
     1381 acaatttgta gaagccgaca atcatatttc gccttatatt cgcggcacgg cagttgacga
     1441 caacaacgcg cggatcgacc tgtatgaaat ttatcaaaat aagggcggac aatgggaaaa
     1501 agagagaggg catttactta ccgtaatcaa tcggcacgag ttttatgcgt gcgcaatcaa
     1561 ctcgggagta ttggatgagg atttgtttaa acggctgcat tgcaccaact tcataaaatt
     1621 gtggaatgca gtttcgcctc ttgttatgaa aatacgcgaa gaagaacgca aagacacaat
     1681 atttagagag ttggaaattt tggttgcatt atggaaagca aaccccctaa aggcatctga
     1741 tttgtgaata aacagtcaaa actgttctga aatatgggca gccacgcaat cgccgaaata
     1801 cgccaaagca gccttataaa gtgatttttt gaacataatt ttctccttgc ggagcatttt
     1861 ccaatcaaac agttttagtt tacttggttt tgtatcccta aacaaccgaa atccgacatc
     1921 aagcaattag aaagcttttg catcttgaaa atggataaca aaatattgcc tgaaggcgca
     1981 aatacagtac aaaagccgtc cgaaacagtt cggacggctt ttggcgtatt ctgcacaagt
     2041 atttgaacaa ctgaaatttt atggtaatat gtatctactt tgtagataca ataaaggtga
     2101 agattatgtt gcgtgtccaa aaatggggga actcggcggc cgtccgactg cctgccgaca
     2161 tgctgaaaca attggatttt aaaatcggcg acgctttggt agcggaagta cataacggcg
     2221 aactccgtgt gcgtgctgcc cgacgtttcc gcttggcaga cttgcttgcc gaaatggaag
     2281 aaaccccgcc gcgcgtagaa ggctgggaaa tcttggatga tgtcggcaac gaggtcgtct
     2341 gaaatgtata ttcccgacaa aggcgatatt ttccatttga atttcgaccc ttccagcggc
     2401 aaggaaatca agggcgggcg gtttgcgctg gctctgtctc caaaagcatt caaccgcgca
     2461 acgggattgg tttttgcctg ccccatttca caggggaatg cagcggctgc acgaagcagc
     2521 ggcatgattt caaccttact cggtgcagga acggaaacgc agggcaatgt ccactgccac
     2581 cagctcaaat ctctggactg gcaaatccgc aaggcttctt ttaaagaaac tgtacccgat
     2641 tatgtattgg acgatgtgct ggcgcgcatc ggcgccgtct tattcgatta aatgctgaaa
     2701 ccgcccgaac ctgtaatctt ttcttacagg ttcgggcggt tgcttattcg gcacgctgac
     2761 tgcttactgc atgaccatat gcctgccatt cccttaaatc ggctgcatgt ccgtcggctg
     2821 tttctgccag tcctgcatat ttttcagcgc actgtccgaa taatagccag ccttgggaat
     2881 ctgacgcgcc atcagatgcg gtggcggcgg tagtggttgc gggcaggttt ctgttgcgat
     2941 tttgggcggc ggcgtagtgg cgcaggcggt taagctcaag acgcatagcg gcaacagttt
     3001 tttcagcatt ttgtttttcc tcttctaatt tggtttgtcg ttcggcaaac gcggcagcgg
     3061 ccttctgctc ggcagaacgc gcctgctttg cctgctcgat atagccgtct ttcagacgat
     3121 tcgaaatttc ggcagcagca gcctcccgtc ccatgcggta tttttcggca cggtcgaaat
     3181 gccatgcggt aaaaatcagg acgattagca gcaatacgcc taccggcttc cagtatttca
     3241 ataaaatatc catttcagac gacctcaagg atgcagcccg ggcagataca cggttttgcc
     3301 gtttttcttg gttgcggtca gtatctggtt gcgttgcggg ctgttgcgtc ggaaaccgat
     3361 gtgtacccat gcgccgtccc cgcgctcggg aaattcgagt atcaactggt cgaatttcag
     3421 cgcgccttca tcacgcattt tgattaacag tttggcaaat gccggcgagg tcatacccga
     3481 tgcgtcacaa tcggcggcaa gtccgtgccg gtgcgccgat gtcgggctgc caccgaccaa
     3541 tttgtttacc cgctcgctgc ggaagcagct tgttacgata atcgggcgac cgacgtattc
     3601 gcggattttt tcaagctgct gtgcggtgta ataaatgttg tccatgtcgg cgggcgacgg
     3661 ttcgttcggt acacctgcgc gacgcgcggt ttcactgcgt gtcaactcgc gcagactgaa
     3721 atttttggta acttgcattt cggttctcca tgttcttttc aaataaaaaa ccgcctaaac
     3781 gacaggcggc tatctcaata attctgcgta taaagttttg atacgaaaac gccgcgaagc
     3841 tgcatacttt gcggcgtttt gcttttttca ggcaaactat ttcaaaccat gccgatgccg
     3901 ccatttgaca acccgtaccg aacggctgcc gaaatataca caggcggcaa tatccatcat
     3961 aaatttgcct aagctcggcg tcagtccgta agcaaagact atgtaaaagg tatagatcgc
     4021 tccacctaaa aaggcgagat acgcccacgc ctccggcgac aatgcactcc atttgcgccc
     4081 gttcagacga caaatcatca agtacgccga aatcagtgat ggggcggcag aaagaatcaa
     4141 aagtaatttc attttttcgg tctccacggc agaagattca gcagccactc cacaatatcg
     4201 tctgcatgct tttcgaacga tggccagaca gcgcgggcaa atctcaacaa tacctgccac
     4261 aacaagccga caacgacggg ggcaaaggca tgtgcaaact gtatgcgctg ctcacccagc
     4321 gacggatggc tgccaactac ttcgccgatt aagaaatgcg tcagcggtgg ggcaaaagcg
     4381 ccacccaaaa gcccgccgat aacgatatag gccactacca tccagcggct tttcggctcg
     4441 cttatcatcg ttaccgccgc cgaagccact gcgcccagca cgactgcatc gacaggcatc
     4501 cccaacagat aacctgcgcc gaccacgccg ccaaaaatat aaacggcggc aggggtaata
     4561 atcggttcag acattttctt ttcccttatg cgaaggtcgt ctgaaactgt ttttcagccg
     4621 accttccgtg ttatgaatca gatggctgct tcaggcaaat cggcatagac caactccgcg
     4681 ccggtcaggc tgttggcgga aataggctga ccgtaggcat cgaccgcgcc cccttcaacc
     4741 gctgctacaa cagcctggta tgcccagtcc aatacatccg taccgcgagg cggcacgccc
     4801 ggaatattca actgcatcga accgaccgaa cgtccgcgac gttcaaatgt cgatttgcgc
     4861 acatagctgt ctaacaacac cacattaaag ccggttgcat aatccagcga cacatgtcgg
     4921 atgacgtgaa actcggcaga actgtcggtt tcggtatcga tgatttcacg gttgattccg
     4981 acggtgattt gatttttgtc ttttgacatg atggtttcct ttggataaaa aaagaccgtc
     5041 tgaaccattc agacggtttc ggttttgcag ccgtatctat ttccgtttcc gaaaatgacg
     5101 gtagaaaagg atacaggcta aaaataaagg cagcagaaag cgcgcatagg gataccacgg
     5161 atggtctgca tgccagtatc cgtgccgtcc ctgtggaacg gtatcatagc ggtaactgtc
     5221 ggggaaaaag ttgatccaaa ccgttactgc cagccataag gctatatccc tgactgcttt
     5281 catttacttc tgctcctgtt taaattccca gcaattccat ttcaaagcgc gaacgccaac
     5341 gggattgcgc ggttacgatg cagactttca gacggcggtc ttttgcagtg tactttaacc
     5401 agctttcgta aaatgcctca aggactttac cggcattatt aaccttgctt tgcttcaaca
     5461 ctttaaacac ttcatcacgg gttttacttt tcagatagct tccaaacgac gaattcccaa
     5521 aaataagcgg aatttcgttt ggcgcaagtt tgacaatact tcctgcaata ccgtctgcca
     5581 acaccgccat cggcctgatg cgctcatggc aggtcgcaat ttcgtcaaac atcttgtcca
     5641 ccatatcaac gacggtttcg gtaatttgac tgggctgcac cttgacagct ccgtcgaata
     5701 aagcgttaat aattttaaca taggctgtac gttttgcctg atccataaat aaacctccat
     5761 aaaaaagccc accctcaggc aggcagaaaa aagccgtcct ttcggacggc taaaatttaa
     5821 acaataagac agacaatacc cgataaatcg cccaagggtg aataatcaaa attgccgcta
     5881 atgcggcaga ggatatgcaa cgaatgtgct gcaccatcga tacccttctg aaaagatata
     5941 ctgcctgtct ttggtagatg gaatgggacg gaaaaactaa gaggcacctc ctgcggagtc
     6001 cttatataca gcggcggagg gccaggaacc catacggaaa acttttcgtt acgcgctatc
     6061 ctcttttcag gtgactgaat cgtaacctcc cgctgaatca caccatccat gtgcagttgt
     6121 agactgacaa ctgcaccatt ttctgcaaca gcaaaaaccg gcggcacgat aaccgtccgg
     6181 cgtgtttttc ggctatcagg gatttggcat atcaattcct gataacctaa tggcgactgc
     6241 ttcagctcaa acgtcctgac cgccacgaca tctccgatga tattagcggc ctccaaatcc
     6301 acggcttcaa ttcgcgcgcc acgtatcgta ccacccttaa ttagacctgc attgacggtt
     6361 gcaccattca gcgttggggc ttcgatagtc tggttggcag cgatgtgctt tgccagtatc
     6421 gaaccagtcg cgaacaggtc gccgttcaaa gcctgcttcg ccttgccgtt ttcgataacg
     6481 gtaacgaaag cgggcgtaac cgtcttatct ttcggatcga cataagcaac tttatctgcc
     6541 atcaggagga tttcgccact tcccgtcttt ccatcggctc ccactgcaac ccctgcaact
     6601 gcccgacgac cgcctgctat tgcctcagtc ttcagcgtgt acaaagactg tattttccct
     6661 cctatctctg caacagcaga actggcctgc tgaactttag ccgacaaggt agtcaaagca
     6721 gacgtatcgg cgttactgtc ctccggtgca ggactccagt cagttgctac cgtgccgcgc
     6781 tccagtttta catttgaaac cttgatggat tctgatgtct gataccgcgc ctgaacgatg
     6841 aagcttcgaa gtgctttaac ctctttggca accgtgtgtt tggcgacaat acgctgtttc
     6901 agcgttttgg tcgtaccgct gacggcttcg ccgtaccacg cagcaaaata acctaccgag
     6961 ttgtccgcat agattacgga aaattccgca ccgattcgcg ggtatggttt gccatgaggc
     7021 gatgtggcgt ttaccagttc gatatcgcac gagataatca aactatcgcc ttgcttcaga
     7081 tccaaagcag acgaaacgtc gatagtgacg gttttggtct gattattctc gctagcggtc
     7141 aacactttgc cggctgttcc tgttgataag gcataattcc gaccgccgac ttcaacattc
     7201 tccagcttcg ccgtcaacgt gttgatctca gacgacctgg cagcatcctg acgtgttacg
     7261 gtttcccgca atgccgaaat accgctttct gcattaccaa gtctgacagc cagtgtttca
     7321 cgcgcctgcg cctcggctct gtcgccatcg gtacgggctt ttttttcggc ttccagcccg
     7381 gcggcggtat tgccttgcgc agacgtaaca gtttggattt gctgcgcctg ctgctcattg
     7441 acagcttctg ttgcggcaat acgcgtaccg atttcggatg actttctggc aagctcggca
     7501 gttcgggcag atgattccgc ctgtattgcc gccgttcgcg cccgtgcttc ctcctgtaag
     7561 gctttagcac gttccgctgc ctctgcagac actttcaacc ccgcagccgc agccatatca
     7621 cgattcagcg tgtctatcag ctccctgctt aatgcagact tcccgattgc accctgaatc
     7681 tgctgcacta tcggcgcagg attgttatct gccctaccct gtacggcagc ggtaaattcc
     7741 cccgtatttc ctgcaatatc acgtatgcgc acccagaaat aataaacgtc ggcaacgccg
     7801 acgccggtta aggtataact gttttgcgga tacgccagcg acgcgagttt cgttgccgtc
     7861 tgaagattgt tggtcttgct ataccacagc tcgaaaacca aatcggaaac aacggtttgc
     7921 ggcaataccc aatccacggt cacagacagt gttttcggcg tcgtcctcaa tccggtaacg
     7981 gtatagtcga tactccaagc cttaaccaac ggtgcggaca gtacaccccg tgcattacgg
     8041 ccgcgtattt ccgcccgata attgccgttc ggcagatttt ccaaacgaat ttccgctgtc
     8101 tgtgcatcag ggatatggcg gtataggctg ttgttacggt aaatcttaat atcgtaagtt
     8161 aaaacctgac cgtttgcggc caggttgtcc catgtcacca caactgtccc accgtcggta
     8221 ttgacagccg catcggtcaa cacaggggca gtgttgtgca gcgtggtaat ttcatggtca
     8281 aaatgcgcaa aactatccac ggcagcatat tttttcgggt catgcagcaa cgcggtaacg
     8341 gtataagtac ccgcatccgt attctctttg atgccgatgg cacggtagag gcgcggcttg
     8401 actttgccgg ataaaaccca cgtatcgcca gcctgcaacg gcacctcacg ctccaaagta
     8461 accttattgc ctgctgccgc agttatcttc gctgatttca gactaccgcc ttcagaataa
     8521 aacaccaagg ctccgaccgc atcggataca ggtcgatcca gcgtcagcac attgcccgaa
     8581 atggcggcaa cacgtccaga caactctgca cctgcgtatt gattgtccat aatctgcacg
     8641 atgtcgtaag gcagatgctt caacccctca cgcccgattt caaacgttac ggcgttctgc
     8701 tgccgcaact cagtttgcag cgtccatgcg ccgaaacgtg ccgcctgccc gcgcgaatcg
     8761 cagccgaacg cagtaatctg cttgatattc aaaccatagc gggcaatggc ttcgttgtcg
     8821 gctacatatt ctgttttagc gcgatagcca tcgtatttgt ctatatactg cacatgaaca
     8881 gcagtatgaa tggacttcaa cgctgcaccc gcataattaa acaggccgtc tttaacattg
     8941 gcattggtat attgcgccac cggatcggcg tcggcatcca tgacgacgga tacttgctgt
     9001 ccgttccaaa ccggtaaacc ggtaaagacg ctggcaagat tgttcaaaaa ttcacctgcc
     9061 tgcatcaggt cggtaatgta ggcgttgcag acgaaacgcg gctctttgcc gccgaagccg
     9121 tcatcgaccg gctcgtcgca atatttcccg atttggtaca ggctccattt gtctatgtct
     9181 gccacattca gacgacgtgc cagcgtggaa aatctcggct gggtcagcac atcgtaaaaa
     9241 acccatgccg ggttgtttgt ccatgcggtt ttgaaactgc catcccatgt tccacccgta
     9301 tattggcggg tttcaggatt gtaattggac ggcactttga ccaagcggcc tttcatcaaa
     9361 taattgcgac gcggaatctg attcccgaac tgcgccgaat caatcgacaa tgccgcaaac
     9421 gcggtatgcg gatagctcaa tttcgcatca acgatttcaa cgtaggacga aaaataggta
     9481 ttgttgctga ccttgtcggt cttggaatca ggcgaaattc ggaaaacgcg gatattgaac
     9541 ggcacttgcg gcaccacatc aaattcgaca tcctgataat atgtcccgct ggatttttca
     9601 ttgaaacgca cctgatttga tgcctgcaca ccattgctgt ttatcaactc aacgcgcatt
     9661 aaggtatcag caggcacggt gtcgccgttg tcttcaacct gtgcattccg ctcgacagcg
     9721 accgtaatcc gcaaacggct gaccaattcg tcggtaacgg cgcgaaccat cggctgattc
     9781 tgcttcaccg cagccgaaac ggctacggtg cgctcggaag catcgaaacc cggaacatag
     9841 gactggtctt gctcgccacg ctggaaataa cccgtaactc cattaaaatt gtagctgccg
     9901 tccgaatttt ggacaggagt gtcatcaaaa tacacgcttt tgaacggcgc atcatcgccg
     9961 ttggcaaacc ccgaaaccac accttcggat accgcatcaa taatccgcag cgactgggcg
    10021 ctggataaac tgtttggggc ttcataaggt gtccgttgtc ctccgcccga tttgccgccc
    10081 atattgtttc ctttcctgat tcaaaacctt acttcacggt attcagaata ccgatcaaag
    10141 cccaaaaata cacaaacaaa aacagacacg ccgcgaagtt tgctccttcg cggcgtttcg
    10201 atttttcaga cgacatttca gcccgaaaac gccgccttat aattgcgcgc ccgcacgctg
    10261 tcgtctgaaa agtcggtacg gtatttctgc ccgttcggcg cggttgctgc tacgccttga
    10321 acgaatgtct tggacaaacc caaattcaac accgcacctg acgaagccgc cgtcgatgac
    10381 ggttcgatac ggcgggactg cacaccctgc gatacaacac ggctgccgca gtagcaaagc
    10441 ccgtaagcca acggcacagg gcgaccctgt gccgttgtat tggcaaggtt ggaaaaagca
    10501 gaattcttac tctcctccac ccccttgccg tcggcatcca atttgggctg tttggtcaac
    10561 atttgggcga caccgccagc caccataccg ataccgacgg cgataagctg cgcaccactg
    10621 gcccaactcg tatacgcacc gactacaatc aaaaccactc cgacaatggt ttggatcaac
    10681 ccgccatttt tacctgcacc ctgtacgcgc ggaacaatgt gcaatacacc gtcagcaggt
    10741 cgtctgaaaa cgctacctat cgtttcttcc gactggtctt taccgtcaaa ccgaacctga
    10801 tacaccccgt cccgaatccg ctgacgcaag cctttgattt gggtaaacag agcgtgcagg
    10861 gcttcggctg gcgtctcgac gtgcaaaaca aaacggcggc cgtattcgcg aaggccgccg
    10921 tacagacaaa cagtaatcat gcttgctcca tatgggtaaa atcgttctca agtgcctgca
    10981 tcatggccgg ctcgaaatcg ggatgccgcc aaacgctgtg cgtaacatcc gcccaatagc
    11041 gggtataagg tacacggcag ctcaattgat tgtaggcatg gtgcagcatc cagtcgttgc
    11101 ccaaatacag gacggcatgg gacgcatgcc cgcccgttgc cgtcaagacc acatcgccgg
    11161 cgcaaaggcc gtctgaaaca cgggaaaacc cgcagttttc caaatgcttt tcccaaaagc
    11221 ccgccgctgc gtcctcatcc atatcaccgc gtggatggtc gggaaaaacc agccccatca
    11281 gcatgaaggc atcgcgcacc agcgcgccgc aatccgtctt gccgtattcg aatacacgcc
    11341 cgcgcaaatg cggaacgggg cggaacagtt tcagacggcc ttgtgtaacc aaaatccaag
    11401 gcaagcccgt ttcgacctgc atccatctgt ctgcacccga taaaaacggc tcgccgcgcg
    11461 gatgggaatg cacgactgcc acaatctcgc cgacgcgctc cgccgccatc cagtcgtcag
    11521 cggaaatctc aaaggtttca tgcggatttt cggcgcaatt ggacaaaggc agaaactcat
    11581 agccttcata actgaaaacc aaaaccccgc acatttcaga cggtacggct tcttcagcac
    11641 acgccagcat ttcgcggcgg gcttcttcac ttaacaaatc caaatccatc atgtcgttac
    11701 cttatcacta gatgggaaac cgccgaacgg caaaactgcc gtcgcgccaa accgcgccct
    11761 acatcctgtc agtgttttgc tgcatacgtc tttggacgca tcgtccgtgg gcatatcgaa
    11821 acggtcggca accgcacgcc ccgtataacc gcacccttcg ccgcgatact gccagcagca
    11881 ggtatttgcc agcataatac gggcgggaat gaccgaacca tccgattcgg acggcgcggc
    11941 aagttcgaag gttgccgttt ctgcattcaa tgccgtcatc cgttcaacca aatatttgcc
    12001 gacgacttcc tgcatcgggt ctgcggtcgg attgcgcccg gactggaaat tgaccgcatc
    12061 taaaaacttg gcataggttt gacggcgcac aaccagcacg ccgacgagct gaccgaactg
    12121 atccgccgcg cccgtaatca aacccaagag attcgatacc gtcagcgtcg gacggttacc
    12181 cgcgccttgc gaagttgatt caaagccgtc agccttaatc ggataaggct catatgcctg
    12241 tccctgccag acaaccgccg taccccgctc gttgacctga ttgcagaaat agaaaacccg
    12301 accgcccagc ggccgcaagt ccacttgcca caaatcgacc aaaacatcct gctgcgcggc
    12361 agacaaggct tgcagcatca cacccgacat ggcctttata cgcggattca tgaaagcacc
    12421 tcctcaaacg tacagctcaa ttcgtaggct ttgccaccct tcgccgtttc ctaatattcc
    12481 gataccttga ccaatacagg cacgccgtcg ggcggtctcc aattaaacgg ctcaacaccg
    12541 cgccgggcat caaaaaaggc tttgatttct cccatcaaag ccttttgtcc gactatctta
    12601 atctcccagc ttcgcagctt cggtttcaaa gatttaggct gccgttgctc gtagccgtcg
    12661 ccaaagcgga cggaacggac atcgaattta tgtacagcct tattgtccga agcaacacgc
    12721 catcggaatg tttcagtcat gatcggttcc tttcagacga cctatttatg gtaagtaccg
    12781 ttttcacggt acacattctt gacataccac tgttccacca tgcccggtat ggcagcggca
    12841 agatgcttcg ccatctccgt atcggcactg ctgtccgatt cggtgctacc gtcccgattt
    12901 atagtgatgt tgacctgcat gcttccagcc ccggccgaac ggactccggt caaaacggac
    12961 ggcagtccta ctgcgccgcc accggcataa ccattcaacc gcagccgctc gacagccgca
    13021 acgccgccgt gattacgtac gtcccgctgg gaaaatacga cttcgccctt gtgaacaatg
    13081 ccggcaggct catacttccc gccgtagccg gtatagccgc cgccggaaaa caacgcgtcg
    13141 aactgcgtac ttcctccacc gacaataccg ccgtcggcat aacccaacgc cgacttcatt
    13201 gcattgacaa tcgccatttt aatcagcatt tttgacaaat cctgcaaaat ggaaacagtc
    13261 aggcttcgaa aatcaagttt gcctgtggca acaaagtctg ccagcgcatc ccccattttg
    13321 tcgaaggttt gtacggtggc attttccatc gcctgcctca tcgttccgaa tgaatcgatg
    13381 tagcttttca agccggactc gataccgccg cgccaatcat tgtcgctgtc tgcacgcgcc
    13441 ttctgcattt gagaaagatt gctcatccct tccgccttgc cgcgctccaa taaatcgata
    13501 ctttccaacg gcgcaccttc ttcacgggct ttcgctatct gtctgtccca cagtctcgcc
    13561 agcgtcagtt tctcgatttc ttcacgggtt ttgccgataa gcgaaatttc aaacagcctg
    13621 tcatccaact tttctttcga atcgtcggtc atttgcttca ctatgtcgga atattttttg
    13681 gaggcggccg tcaaactatc ctgcgcatcg gccttctccg ccagctcgcg ggcatcggcc
    13741 tgctgcttca gcgtccaatc gccgaaagtc gggtcggaca acaacttcaa ctgttcgccg
    13801 atggcgcggt tgccgtttaa aatttccagc acccgcttcg ctcccgcctc cgccgcccga
    13861 cggttaaaat cctcgtgcca tttttcgtag ccggaaagag gttctttctc cactccctta
    13921 aacaacccga ggtgcgccat atttttcacc tggccctcaa caccgccggc aaatcgcgca
    13981 gccgcctctc gagaacgcca gttgaaatgc cagtggtcgc cggttgctac cgtaccgttt
    14041 ttattgcgct gtccggcaag ttccagttta aggttaaaat cctgcccgtt tttaaacccc
    14101 aacgactcaa gataacgggt catttgggcg acaacttcct gtttctgctt catccccata
    14161 ccgggagaag gagtggcatc aaatgccaat ccactgttat gcaggctgtt tttcccaatg
    14221 tggtatcgat ctcggaaggc gccgaaacgg aacagacggt ctcccagcat ctgctgcatg
    14281 gcatgcgcga aggcatatgt tccgcctagc gctttgccgc ccgcttcggc tcccggttta
    14341 atcctcaagc cgttcgaaac agtggggtag cttgttttat ccgttttttc tttctgtcgt
    14401 tcgtgttttt tctcggcaaa actttcatta atcagcttgg catttgccgc gtgcttatta
    14461 atgatttctt gccgcttttt cgcgtcagtg atgccgtcca acgccttttt ccgtgctttg
    14521 tcgtttttaa gcagttcgcg ctgccgttgc tgctctcgag tggcataacg ttccgaaaca
    14581 gcctccaatt cggctatacc ttcagttcga ttttggttct gcttctgttt ctgccgcaaa
    14641 gtttcagcag cggctgcctc cttgtcgatt tcggcacgca accgggcacg ccgcgcatag
    14701 gcttcctgca gcttacgctc accctcttca ccccaaaaca attgtgtaac cggatgtttc
    14761 ttgctggttt cgatttggga aataaacgaa tctagcgcgg caatttcatc cagcttggtc
    14821 ttgtccctac ctatggattt aacagcatcc catgcctccg acgcactttc tttaatatcc
    14881 ttccacgccc gctcaatcaa cccaagatta cccagtacgc gttttgccat atcctccgac
    14941 tcttcggaga atttccgctg caccaatgca accgcgtcct gttcccgacc ttgtgcctgc
    15001 aaagccttga cctgctggta aacatcggca gtcattgtcc ggtaggtggc tgatagggat
    15061 accacagctt tcagcgggtc tttggcgatt tcagtatatt tctcaaccaa atcgtcaata
    15121 ctttgccccg ttgcctgcga ctggagggta atactccggg cgaactgttc gtaattgtcc
    15181 gttgcaacct tgccgcttga gaccaaggcc gtaattgcag cacgcgcatc agcatagccg
    15241 cccgtcgctg ccccgaccga aacagcgatt tcctgcatcc tgtctgcagt aatccctgct
    15301 gcatctccgg caagtatcaa ggctttacgg tattcgcacg attcctctgc cccctgatac
    15361 atcgcataac ccaatgccgc aatgccgccg cccaaccccg cgacagcaag gcgcataggg
    15421 gaaatgaccg tggccagtcc cttaagcata ccaccgaagc cgccatacat atcacgcaac
    15481 tgcccaccct gttgaatcat gatcagaaac gggctttgcc cgcctgcaag ctgggtaacg
    15541 atgtcggtaa tttgtgccgg ggtttgccgc aatgcgttat tgaactgctt gacagactgc
    15601 gtagcgcgat tggtctgcgt attatgcctg tccaattggg acagtagcgg attaagccgt
    15661 gcaatatcga taccgcgctg gcgcgcaagc tcttcgtaat actctcggtt tgccttaccg
    15721 cctgcaatct taacggctat atcgcggcgg atggcattct ccagagaagc caaagaccgt
    15781 tccgtccgct tcgatgccgc cgacactacc gtcgatgatt tctctgctcc gtcgccacta
    15841 tgtaccaatc cgtcagaaat acgccgcccc tgggaagatg ccacatcccc caaagacttg
    15901 atggattgtt ttgccttttc tacgccgctg acgacaccgc cagtttcggc ggtaatataa
    15961 atcttggttt cgttattcat gttcgcctgc ccacattgac aacacttcaa gctccatcag
    16021 gcggactttc tccaacagtg ctttccgttt cttcgacttg atattgccgc attccataac
    16081 tgctgcgact gcggaataat ccaaccccgt cgcacccgac attccgatac gccactgcgt
    16141 cgatactcca ataaacagtt gcaccgcctg ccagttgcac ggccatacgc caaaagtggt
    16201 ctccttttct gaaaaatcgt ccgccgaaaa tccgaataca ttcaattccg ccgcgtcagg
    16261 ctgcttctca taaagcgcac gcgcggcggc aatcagtttc cctcgcgggc attgaaaact
    16321 tcctcaacat agccgttgac gatggcaaac accgccatcg gatagctatc cagcaggatt
    16381 tcgacattct gccggtcgaa tgcttcttcc aaatcccagc cttgaacaca atctaagacg
    16441 gtatctgccg tccagccgtc tttatgcttt tcggtaaatt ctttcattgc cttgcggccg
    16501 cgcgccttaa attcaaattc gacgtccgca ggttctgcac cgggaacagg gatttttacg
    16561 gtatgtcgga aagttgcatc aggcttcaaa gtgagttttg ccatttcaat actccaaata
    16621 aataaggttg cccgagtaac tcggacaacc ttgatatgcc gataaaatca ataacggttt
    16681 acttcgccgg aaatggcgta ggacaacgtt accgccatta cttggttacg aaccaattcg
    16741 ggggttttat tcatgctggg ataaccgtta tagcaaatca gcccaccacc tttcaaaacc
    16801 actttcaaag gccacttgcc gcctttatcg ctgcattttg cagccgcctt gtagccggac
    16861 aacgaagtat cgtcagcgat cttaatcgac attgacatag ctgatttcgt ggatgggatt
    16921 tgctggtcaa aatcgtcctc caggaaacca aaatccacat attgctgctc gccgccactg
    16981 gtcgaaaatt ctacaatttg cgaaacttgc acccaatcgg taattttctg aacagcacca
    17041 ataccgctgc ctgccggaaa ctcatctgca ttggaagtat caatgccggt cagcttgaat
    17101 gtatcggctt tgacatcgcc aatctggaaa acgcgttcat tcaactttcc ccagccgctt
    17161 ttaaacaaaa ccaaatcgcc gttggcaaac ccgtgtcctg ctaccgtcag gacgcattcg
    17221 gcagcattag ttgccaccgt agcttttttc tccgccgcca aagcggtcgc aatgtgaacg
    17281 gtcgcaccgt tcggtaattt cactgccata ctttaactcc aaattaaagg caatctgaaa
    17341 tcagactgcc gtatcaaaat aaattgcctg ccatccttgc tgataataga cggtaacggc
    17401 ctcgccgctt tcgtcggaat cgatattcag caaatcaggc accagatttt ccaaatcacc
    17461 aacacccaaa tcggaatgtt cggcaaacaa ctgcccaatc aaagacagca tctcttccgc
    17521 cagttcgtcc gcaccggaag cagcctgcac gcaaaccaac gtaaccagcc gcaccgtatg
    17581 ccggtaggta ggcggaaaat caaacgtttc ctgttctgtt cggcgacggt caacgtacac
    17641 cacaacacac ggcaactgcg attgcgcagg cgcgaaacca cgcccggaat acacgcgctg
    17701 gaacttcgtt ttcagcacat ctgtcgccgc attgcggatt tcagtaagtc ggcttgtcat
    17761 gtatcgccct caattgcaca acaaccattc cgcagccgtc aaaatcggtt tccgccaccg
    17821 cataacgttt gccacgcacg gtaacaacca ccgacttcac gtcttccggc aggtcgtctt
    17881 cagtaacgat gatttgcggg tcggcattgg caacggcaac gccaaacccg ctatccgtta
    17941 taaattcacg gtcaaatatc gcgtttacct ctttaccgcc aatcatcacg gtttcaccga
    18001 aatcggcagg attggtaaac acgttcagcg gctcgttaaa cactgccgtc ctcgccgccc
    18061 tcaccggatg cgttaccgct atcttcagct tcgccgccat cggcaacagg ggattcggcc
    18121 tctttggcag gcgcttctgc cgcccaacct tcgcggatat agacagccgc cgcagattcg
    18181 tccaccgaat attttttccc tgtggcaaac gtctgttcac catcgaaaaa actacgggtc
    18241 gggataattt tgatttttgc catttttaat acctcaatta ataaggtcgt ctgaaattca
    18301 gacgaccttg ggtttcacaa tcaagcagcc gcgatgtctt taatggcggc aaaggattcg
    18361 acatgacgga cggcaatatc cacatcttgc aacgtggtga tgcgtaccgc gcccgtagta
    18421 gacttggtgt acggatcaac aatcacatcc aaaacgcccc agtgcgcaat catcaaatca
    18481 gaccagttac caaaaatcag cgggctgcat ttgttggccg ccgtgccttt ggtcaggttg
    18541 gacggaattt ggtttgatac cgcgcaacgg tagccgttca acggcgttgc gccgtcctgc
    18601 cagatgtagc cggacacgcc gtcggccttc agcttggttt tcagcagacc gcggacgcgg
    18661 gcattggtga tgtatgccaa atcgccgatg tcggcattgg cggcggcaat ggcactttcc
    18721 aaagcgacga tatgcttcca ttcgggcgca ccgccgttcg caccgatttc caccgcgccg
    18781 atgccggcgg tattcaggat gccggtcggt tcgttgccgg tacctttgcc gttgatggcc
    18841 gccaaatcga tacccagcat catcgctttc aataattcgc tgcgggcgaa ctgttcggca
    18901 gacagcgagg attgcaaaat gaatttgcgg ctcaattcag tattggcggt aacggttttc
    18961 ggtttcaggc tcatttgtcc gaaagtggca ttcgattcgg tcgcgctgcc gttttcatcc
    19021 acccattgaa cggtgtttcc ggtcaggtgt ttcggaatag tgatgtcgcc gaccaagccg
    19081 tccagtacgg tggcgcccaa ctgggcaacg gcaagtcggt tgcgcagcag ttcgatgaac
    19141 aagtcttcgc ggaagtcgtt ttcgatgacg ttgccgccgt ttgccgcatt gcctttgctg
    19201 taagcgcggg caatcaaatc agtcggcaca aagaagcctg ccgctgcgcg accatgtcgt
    19261 ttttccaact cttccgacac ttcgcgttcc aagcccgctt tgtcccattt gccggttgcg
    19321 gcggcagaca tggcgcggag aagggaaaat tcacgctgtt ctttatcagt catgccgatt
    19381 tcaccggcgg taacggtcgg cttcgtctgc atgtttgcca tgatggcggc gcgtaattgt
    19441 gcttcactgc cgccctcttt aataaccttt tcggctgctt cgataccgcc gtgggcggcg
    19501 taactgcgac caatggccag cagttcggaa acgcgcgcgc gttcgttctg cataccgcgt
    19561 tcggcggtgt tgttggtatc ggttgctgcg gcggcaggga ttgcagcggc ggaagtttcc
    19621 accgtagtgg gcgtttgatt tttatccatg tttcgatttc ctttttcagg ggttgggttt
    19681 acagggtttt caataaatgg ttccaccgac ctgcctacac ctactgtcgg gtctgcagga
    19741 acggttacaa aactgatttc atacggcatc cagcgggtaa cgatgtaacg gtagccctca
    19801 tcgtcagtat cgggattgtc caataccata tcctccactc ggtagccgac gctgatatgg
    19861 cgtaggatgc cgtcttgcac gtcttggaat ttttccgttg ccttcgtacc gttgccaaaa
    19921 cgtaccaagg cacggccgcg cttgtcggca tcaatccaag cacgttcgat gatgccgatt
    19981 tggtcgtccc agtcatgatt gaacaacacc gcgccgccgt cgttcaggcg gcttaagtca
    20041 acagcaccct gcgcatgact taatacttca tcaccgaacc aacggcgtac cgattcttcg
    20101 ctggaaaacg ccacttcgac cgtccgtttt tcaacatcaa cactttcgcg ctgaaatacg
    20161 gcaaagcggc tcatttgctg catttgcgcc ttatcaggct tcattttctt cattcgggtt
    20221 atcctccgat tccggttctg ccgccgatgc ggccggtttt acgtcggcaa tgattccttt
    20281 tcctgccaac atctggtttt cctgttcgat ttgggtaata acatcttcaa aatccaaacc
    20341 catttccgcg caaatatcgc ggcgggattt gactgccagc gccaccgcct ctttatgcgc
    20401 attaatatct ttcagcgggt caacccacga ccagcggcgc ccctgccagt tgcaggcctt
    20461 gaacttgtcc agcttgccgg caggcagcga tttgccggac ggcatcttga ttgcgcccat
    20521 tagcaacgcc gcctcaatcc agcgatcgaa tacgtcatac aagaacgcgt cggcaaacca
    20581 gttttgcaac gtcatccatg tgtcgcgttc ctccagcgtc ccgctgcgga tactggaaaa
    20641 gttcacgccc tcaaggtcgt tcgccaagct gtgataagcc acgttcaaac cgctggcgat
    20701 accgcgcagg ctggctttga cgaatgcgtc gtaattggcg tgcgggtaat ccggatcaaa
    20761 cggcgtaaag tcgtaaccct gcggcagttc gtgaaacgta cccggctcga ccgaatcgat
    20821 taaatcgatg ctgccgcgcc cgttatcgac ctcttgcccg tcaatcggcg gcatgaagtt
    20881 gtcggcgtct tccgtctgtt tgaaaaagcc cattttcgat gcaccgacac gggcagcgat
    20941 aatggccgct tcctgatagc ccgacaggtt ttgcaggccg atgatggccg aagccaccca
    21001 cggaaagccg cgccgctgct ctgggcggtc atgcaggaaa atatggctga tttgctctgc
    21061 cggcacccgt tcgcgtaaat tgcccgtatt cgtctgtccg tatgattcgc ccggatgtgc
    21121 cgtccgcaac cagtacgcta caggacggga atagctgttt aactcaacac ccatgcgcac
    21181 ggcgttacgc ccgttttgct gcggaacgtt gtatcccgta tccaaacggt caatatccag
    21241 cacctgcaac gcatagccgt aatcattgtc aaaccctgaa atatgacgaa tcagcacttc
    21301 gccgtcccgc gccacgctgc gaatcagcag ccgttgcagg tcggtaaaag acatctggcc
    21361 ggtaacgtcg cacacgccgc gccgcgccca gcgggaaaac gctgcttcaa tggccttgtt
    21421 cgccaaggca tcgggcttgt cggcgttatc cagcaaaaca cgcatttgca gggcaaaacc
    21481 gtcgcgcccg ataacgttgc tttcgaccat attcaaaaac ttgcgcatgt agtcgttgtc
    21541 gcgtgcaagg ctgcgggcgc gagtgcgcag gcggtcaagg tctgaccgcg ccaaagcgtc
    21601 cgccgaccag ttttgcggct gccacgaagc cagcgacccg accggacgcg cccctgcaaa
    21661 gttgcggcgg gctgttttcg ggacggcttc ccgcctgccg aacaaacgcg caaaaaaacc
    21721 gcgctttttc ggcgcggcat ttgattgttt tgccatagct catcctaaaa tcgcgtgatg
    21781 atacggcctg aacggcgcgg ggaaacaccc gccgccgctt ccagccgctt gatttcctgc
    21841 tgccagaacc gtatctgctt caacaaatcg gcaaggctgg aaaactccat ttcgcggtct
    21901 ttgattttgt accgcttggt catgcccctg cctgccgcat gttccttgta ggcttttcga
    21961 aggctgttca gaatctctcg cgcttcttca agttctaccg catagtcatg tccgctcatc
    22021 gccgtatccc ttcaacagtt cggaaacacc gcacattgcc gcaagcagac tgtcttcaga
    22081 ttcaaaaaat gcatgataga gaatttcttc cagtacatgc tgcatcaggt catccaattc
    22141 gcatttttcc agaccgtcca ttaactccgc atattcttcg ggttccaaca gatgcattac
    22201 ggcacaagaa tcaagctgcc gctgcaaata ccatcgcgcc tttttcaaat cctccgcgcc
    22261 gttcttttcc cgatgacgcc agacatactt aaacgcatta cccatgcaga aattcagccg
    22321 ttcggtaaat tcaatgcatt ccacggcgcg gcttcgatag tgcggcgggg tgatgttgtc
    22381 ttgcttttcc attttcagac ggcctctttt gcataaaatt tactgacgcc ttgctcaaaa
    22441 cgctcttcca ccaagccttc ctcaatcagc gtatcaatat cgcggcgggt taaaaaatgg
    22501 cacagagcat ggcacaatgg cacaaattta tggcacaacc aaaaatccaa actacaaaac
    22561 gcgcccgaca actctgccgc acgcgttttg aaaacatcat acatatgtca gactcaatcg
    22621 tcaaacttct tcaccgccgc gatacctcca accagcgctg cggaatcgta aaacctcatt
    22681 gcccagggca tccatttccg gcaatccgtc cgccgcttgc cagccagccg gcttaaaaat
    22741 ccagttttga cacgatacgt cgccatcttt atttttcgtc cgccaccagc gccgcgcccg
    22801 cggcatcttc tcagcaatgt gttggagaaa ctttgtttta ccagtttccc gctcgccgtt
    22861 ttgcctgcac cactctttgt aaaccaacca aaggtcgtct gtaatgcaac agcaaaacgg
    22921 caggtcttta ataccaccgc cagcccactc cgaataaaag gtttgccaag catatcggcc
    22981 ataggaaatg acgttttgtt tcgcggcagt catcggcggc ggcgtgtttg gatcgaatct
    23041 tacaggctct tccagtttga ttacctcgta tcctttttcg ttttctgctc cctgttgccc
    23101 gtaagtcaga taaaaattcc aacacagcag gaaactgtaa aacaaacgga caccatcgtt
    23161 gccgatacag tctaaaactt catcgcgcaa ttttttgtcc aactttttct caggccatac
    23221 aacgaaataa cgccggtcgt tttcctcaat tttgaaagga tgagattcat tacgcaaaaa
    23281 cacacaattc atatggtttg cttcttcgta agcatcctgg aatttccgct cgacgcgcat
    23341 cgtcttgccg gtaatcatat gtttttggct gcctgtttta ttgtattttt gctgatttgt
    23401 gtaaacctct tcaaaaatac cgaacatttt gcctgatcgg tttgccgtat agttgctttc
    23461 caagtcctct tgaccatatg ttgcgccgta ttcgccgtac atcggcttca cgatttcctc
    23521 gaaaaagaaa gatttacccg caccgtgtat atgaccgtgc atgacaacgg cggtcgtcat
    23581 cttcgcgcct acgttttgta acggataagc cagccaattc aaaatgtatt cgacctgttg
    23641 gtaatcccca ttacataagt gattaatcaa attcagaatc ggcttgattt cagggaataa
    23701 tctatacaat tcgtagtttg tttcgggcat atcctctttg ggaatcggga atttcggttc
    23761 aatcggcatg cctcggaaga tgttgatata gtcgtcagac aacacccgac caggctcaaa
    23821 gaccaatcgg tcgaaccgtt ttacaattcg gctcgggcta ttgacccaaa ttttaaaacc
    23881 atcaggcgtc atcgacagac gagccgcctt ttcagggaca acgcgccata gtttgttgtc
    23941 ccaaatcgat gccgaaccat caagataaat gaaacgctcc atcatatctt gcgtgtcatc
    24001 atcttttacc gcctgaatca atgcgtagtc ttttttcaga cggttgattt cgtacatagt
    24061 cagcaccggc gcacggcccc attcatacca agcatcgaca acgtctttgc cgaaatgaac
    24121 agtcattgcc tttcgggtat atgtaacccc tgtttttctg ttcacgccgt ggtctttacc
    24181 ttcaaccagc ccaaattctg atttcagctt ttgcaatttg gccaaatatt cgtcatccac
    24241 atcccccgca cccccttgat tgcctgttgc ttcgagagat tcatgcaact gctcagattc
    24301 cggctccata tcttgaatgg gtgcgggaga gttttcagac ggcatttccg cttccggcac
    24361 atactcaacc aaccaatccg ccgcgcccat ccagctcaac acttcggaag ggtcgcagat
    24421 gcgcccgccg tctgcaatcg catcggcaat atcgaaacca tgaggccata tccctggagc
    24481 aggaatattg accaaccaaa cacggcaatt ctgctttgtc agtacctcag caataccaag
    24541 catcgccttc attccgccct gctcattgcg cggcagaaac ggtttggatt cagggtcaac
    24601 accatcatcg cgatctttct ttgttagctt ttggcgcagc gaatcgcaat caggccacaa
    24661 gacgacatca cgatcaacga ccgccgacca atccgactta tcccagttat tacaaccgcc
    24721 atgccacgtc aggacggcat agttataacc ctgagcatct gccgcgttct tacatttctc
    24781 cccctcgaca accaaaaccg gtaatgatgg gtcagcaacc aaagaatcaa gaccgtacaa
    24841 tgggcgcggg ttatcccaac aacgccaacg ccacatcttt tcgcctgttt tcttatgctc
    24901 gcaaaacgta taaggcagat cgatttttcc gccgtctgat tttctaaatc gggcaacacc
    24961 gcccaaaacc gcgctggagc tatcgcggaa aacagattta aaaatcaggt cgtctgattt
    25021 tctaaatcca ttcccaaagc tcatagaatt cagcgcatat tcaggcacag gaacgattgg
    25081 cttccacaaa tcacgctcct cctcctttac tggagcagga ggaggtaaca gcttcggagc
    25141 cttatctacc aaatccccat gcgccaaccc aagcaaggag gcaactttgt ctctagcctc
    25201 gttaaaacta tacccgcaaa catccatcaa caaatcaaac ggactgccgc cttccggctt
    25261 gcattgattg caaatccaaa caccactccc gcgacttgaa ccgctaccgt ccgtaaacct
    25321 gaatcggtcg gagccgccgc atgacggaca ggggtgatgt tttttatcta aaatttcgga
    25381 cggtatgccg cacgcttcta aaacctcacg ccaccggtca tgcgcggcgg cattaatttc
    25441 ggcttttgtt gcatattttt tattcatttt cagtcatcct ttacgttttt taggcgtaaa
    25501 aaatacccac ccacgcacac aagaatcact ctggagaggg cgggctaaac actgattgcg
    25561 cgattaatca gtacagggta attaaatctg taacatccct tgagggataa ataacggctc
    25621 agtccacaag ccgatgtgca gtatcggaca ggctgctttc gccaacacga ggctttgtgc
    25681 gatgcttcgc gccttagctg cctcctcttt ttcgcgctcg gcgtccatca atgccgccat
    25741 gactgcctgc ttttgctcaa attctttttc acggcgcttg tacagcaaat cttgctgata
    25801 gacgttgtgg catcggcggc atcggggcgc gtatttttgc agcccggttt ttctgtcaaa
    25861 gccgtttttc ggaaacgccg ttatcggctt aatctctccg cactccttac acgtttttgt
    25921 tcgattcatc gagaactcca atattaaaaa ttatcgtcat caatgcggct tccccagccc
    25981 acagcgagtt ttccacgaca ggcttttttt atttgggttg gtcgtctggt ttctttgagt
    26041 tcaaaaacag gtcgggatac ttaagtttta ttcgtgcagg tatcccgcgc ttcgtccaat
    26101 tgaaaacgca ttgagggcta ttccctgtta ttcgaccaac ttccgcgtaa ctgccgattg
    26161 attgcaacag gcgtttgtct tcattgactc ttttatccat aaataaacca aatgtttaaa
    26221 tctaatgcta atattaaaca ctatgtttag ataaaaatca agtcttgtgt aacaacattt
    26281 tgtttaaata tgggagaata attaagccaa ccgcgaatag gattaaaaat gacaatgcac
    26341 gagacaactg acagactttt tgagatagcc aaagagcagg gagttttaaa gccggctgac
    26401 atagcagagc gtctgaatat cagccaacag gctttgaaaa actgggaaag tcgtggcata
    26461 gcggcaaagg cgctgcctga agtagcaaaa gcattcggtg tatctgaaac atggctgaga
    26521 acaggtgaag gcagccgaac cgcgcccgtc cttattgacc ccgacctacc ccacgaagtc
    26581 aaagacatcc accgcccgat gacgtggagc agcaacgacc cgctgcccga cgatgattat
    26641 gttttcgtcc cctacctcaa agagagctgc ttcaaaggcg gagtaggcac gtatgaaatc
    26701 cccgattaca acggctaccg cctgccgttc ggcaaatcca cgcttaaacg caaaggcatc
    26761 aatcccgaca acgtgttttg ctgcaccctg accggcgaca gtatggagga aaaaatcgca
    26821 gaagacgcgg caattgccgt agatacgggc gaaaccgcca tacgcgacgg caaaatctac
    26881 gccttcgccc aggacggtat gttccgcgtg aagtacctga tacggcagcc cggcaacagc
    26941 gttctgatac gcagccacaa cagcggtttc tatggcgacg aaaacgcccc cttggacagc
    27001 ctgaccgtta tcggcagggt attttggtgg agcgtgctgg attgaaaaat gttgctatta
    27061 cgacgagata atattgatag ggctttcaag attgtcaaaa ataggcgttt tgattcccct
    27121 tggtggcctg gtgagtacga tgccggtatg aatttccttg gcgtacaagg agagttgaag
    27181 gttcacgagc tgcatcacag aacagcaacc ctgtgctttg agtggcttgg cgaagtatct
    27241 gcgccgcgca gaaaagagaa ctacaaagac ctcaagccaa atgtattgta tgactttgat
    27301 ggttccggta agcattttgc caaccctgac gcaaggtatc tattgcccgt cggttcaagc
    27361 ggcttaatct taaaacatat ccaaatcgat gacgaagaca ctctgttgcg gctatggtgc
    27421 gcacgaaata tcccaatgcc acaccggcta tctaaaatcc cgatgcttcg gcagtattat
    27481 ctaagcaagg catggcacga aatttatgct atcaaccaac acctaaggaa aacgaagctg
    27541 atagttgatg tggcatacgg ccccacagat taaacaaccc gcccgcatta tgcgggcttt
    27601 tttcatgccc cgccgaacct gaaaacaaca caaaaccgac aaagccgcct taataggcgg
    27661 tttttttgcg cctgcgaaat ctcaaaaata aattctttta ataatcaaaa tgtttataaa
    27721 tcttaaacag attgttgcat attattaaac gctatgttta aatacaccca tcgaaacaaa
    27781 caacagccac atggagtacc gacatggaaa ccatcaccat ccctaaagaa aatttcgacg
    27841 ctttgctaaa tctcgcaaga accgccgtcg ccctgaacga aaattttatt ccaaaaataa
    27901 attacggagc atccaccata ccagcagccg gctttgccgc acttaacgag tttggaatag
    27961 ctcgctccac cgtggaatct ttggaaattc tcaaaattaa ataacctcct cggtattgtc
    28021 atcccgtgat accggcaacc taactaaccc ctctttaaag gaaaatcaaa aatggaaacc
    28081 caagaaaaga aatttgttcc tgcctccaag caaataccga ccgtaaatag cggctggtta
    28141 gaccgtgaat taggcgaagc catgagtgaa gcggtgcgtg cctgccttgc tcacggtaaa
    28201 cagtcagaaa ttactgtcaa gctcaaaatc caaccccaaa acatccaaag cggaacggta
    28261 aaaatcagcc acgatgtagc aaccaaactg cccaaagaaa aacgcgaagg cggcatcgtc
    28321 tttgctacac ctgacggcaa catccaagcc gacgatccgg cacaaggaaa attgaaactc
    28381 aaacaagttc ccaatacgtc aagcacgttg aaaatggtca gatccaacta actcaaaccc
    28441 aaaaggaaat ctaaaatgga aacccaagaa aacatgatta aaaccgcctt acaagcagct
    28501 caaaaacctt tttttgagtt tgcaccgaac aatactctgc ttgtattcac accagaccaa
    28561 gacggtggct ggagatacaa atcacacccc gaattgatgc aaaacccgta ccgcaagtgc
    28621 ggcaaattcc tcatgcacga taccgccagt cttattaagt ttgtacaaaa acacaaacag
    28681 gacggcacac aaatctacat tgatgccgat ttcaaatcag ggcgtattga tgtcaccgcc
    28741 gtcatcaacg gccatacgca acaagctcct ggctggctcg atttttatgc cgtatacacc
    28801 ccgcaacaca ctacatcggc atccaactgg ctgaacaaca atgcgcaccg catgaatcag
    28861 atggagtttt cccatttcct gaccaacaat gcccgcaaca tcgtatccaa aaatcccggt
    28921 aacgaaaatt ccgtttaccc gaccgccgcc gaagtattgg atttcgcgct caatctcgag
    28981 tacaccgaaa aaaccacctt caaacaaggc tatcgtgaac aggacggcag aatcaacttt
    29041 accttccaat ccgaagactc agggcaaaca gagaaaaacc tcaaaatgtt tgaacgtttc
    29101 ggcatcgagt tcaccccgca tcaaggcggt gcatcctact ttgttgaagc cctgttgaaa
    29161 ttccgcatcg acaaaaacag cggcgcactc gtcctgtggt acgaattgca gcaaatcgat
    29221 gctgtaatcg aacaagcggc aaaagacatt tccgaagccg tacaaaaagc cttccctgaa
    29281 atcgacatct atttcggcat aatcgcctaa aaaaaaaggt cgtctgaaat tgtgaacctt
    29341 cagacgatct ccacaaaaac ccaactccga aagaccccaa aatgaccatc acagaagaat
    29401 actccatcga catccgcgta accgcagaac aggggaaaaa cgactacggc taccccaccg
    29461 aacgctacgg atgcgacatc atcaacacag acggggagct gcttgtcggc atagagccag
    29521 agtacaaaac cccctttgcc gccgtcagaa aggcgctcat ctgtctggca aaagacaacc
    29581 tcaaaaacgc tgcctgatat taagccgtta cccccaataa cgaggaatca aaatgaaata
    29641 cttgatccgc accgccttac tcgcagtcgt agccgccggc atctacgcct gccaaccgca
    29701 atcagaagcc gcagtgcaag tcaaggctga aaacagcctg accgctatgc gcttagccgt
    29761 cgccgacaaa caggcagaga ttgacgggtt gaacgcccaa atcgacgccg aaatcagaca
    29821 acgcgaagcc gaagaattga aagactaccg atggatacac ggcgacgcgg aagtgccgga
    29881 gctggaaaaa tgaactttca ggaagaaaac gagaacatca agaatgacat agagattaat
    29941 ctcttgcatt ccgctgaagc cgacagcgtg gaggcaatga tggacttggc ggtttacggg
    30001 ctggcggcga tggttgccaa acacaacaaa acgcgcggcg agcagcttgt gttacaggcg
    30061 attgccggtc atatgcggaa gcttttggcc gcgcttcccg aaaccgagtc attggtgcag
    30121 accgggaagg tttaccgccg acttgaagat ttgattttta aaacgtattt gccggagcag
    30181 taaagatgaa cacgaatcaa gatacgattc catttggcgg caaccttgtg atttgctgtt
    30241 cgacgggaaa cggcggggac gggcggtttt cttgtctgat taccgatcag ataccggatt
    30301 taaatcttgt cagaagcggg caggcgttcc cgatgttcat ttatgagtac gaaactagag
    30361 aaaaaaggaa agcctgatgg acaccctatt aaaaatcatc atcgcgctgt cattttccgg
    30421 cgctgaggca ttggcggtat ggcttttcat cacggccgcc gatgccgtat tacgccgctt
    30481 cccgaaaccg agtcattaca ggagagtaaa aaaatgaaca tcaacgaact gggcgcaagg
    30541 atagaccgcc cgaccatccg cgaactgatt gcctacgcaa cctgccgcaa ccgccccatt
    30601 tcaaactcga cactgctgcg tatggaaaaa gacggacgga taccgtgccg tctgaaaacc
    30661 ccactcacat cccccgtatg ggacacccgc gaagttttgg aagccctggg gttacagcaa
    30721 taaaaaaacg cccgattagg gcgttttcac attcagacgg cttttgtatt ccctactgca
    30781 tcaaaccgac gacaggttgc ggatttcggg cagcatcggg cggatttttg ccgcgtgttc
    30841 cgcgtcggcg tgtgcgttta aggcttcgag ggcgtttgcg gcggctttga ggcggctgcg
    30901 tgtttccgcc cagaccgtcc acatcgttac cgcctgtttg cagccgagct gcttcagcgg
    30961 cagggaaacg tctctgccca tttggatggc ccacgcgccg tatctgacgg caacggcgag
    31021 gtcgtacagg gcgttgccgc tgatgggcag ggcaggttgc ggtgcgggta acggttcgcg
    31081 gtcgaggact tcgccgtaca gcacgccgtt ttcaactgcc acgcggctca tcacgcttaa
    31141 aacttcgggg aactgttcgg caggtacttc tttgtagctg catccgaact tgcttttgac
    31201 ggcagaccaa agggtaatgg cgatacgcgc ctgcgcttct ttgggtgcgg atttggtcag
    31261 ggcgttgtgc agttttttga cggcttcgat ttgttcgccg gtcaagccgt ccggaagggc
    31321 gcgggtgggt ttgggggtaa ctgtttttat gccgtctgaa attttgccgt taagtaaaat
    31381 ttcaatctgc tcatcgcacc aaaccgcaaa tttcggatta agccaacggg caaagtgaat
    31441 agcgagtttg ggatgcagcc atgtgccttg ctcactgcca ccacgcttca cgataactat
    31501 ttgatttgct tccgttagga tttttctcct aacgcttaaa ttctcagcaa gtgcagagat
    31561 atattgttga gtttgttcac tttttaggta gtctttaggt aacttgccaa agtgagatgc
    31621 aatggcggtt gcatttaaaa aaccgtcttg acggaaagat acaggggtgt taccaaaatt
    31681 gagaacagat acgttcatga tagtttccta gtttagtttc gaaagaccca aatgggtggt
    31741 cgggaggttc gaaaacctac tagaaaaggc cggcgttatt ccccttgcgg gtattgtatt
    31801 ccgcaccctc ccgaccatag gaaactagtt cggatatatc gaaacaaaca accaaacaag
    31861 aaaacttatg gacgtaaaaa attcacgctg acggggtgaa tgccgttcta gtagaggttt
    31921 tcgacgcctc gtgtttcgta atatatccaa tctttctatt ttctgcaagc ataaaaaagc
    31981 cgccatgtgg cggatagggt cgcggtcttc aacagcatgt aggatttagg aatgcccaaa
    32041 ttgggcgcag gggtgttgaa aacacgcaaa cagacgcgcc gccagcctta cgggtaggcg
    32101 cacccccaca taggagtaaa tcgatttgat acgtatagac gtaaaaaatt ccactctatc
    32161 gtgttggata tacgctgttt gtcaggtgtt ttcaagcacg gtgggaaata ttatatagag
    32221 ttatggaaat gtgtcaagag aattagccca aatgggcgga cgcgcggtta agaacccaca
    32281 taggagggcg gacttattcc cctttcgggt cttgtattcg tcgcccacgc ggtcatagaa
    32341 acttcctgct atcgaaacaa acaacaagga aagaaaacta tagacatgaa aaaatcacat
    32401 tgacggagtg attgccgctg tagtgtggtt tctgacgcca cgaacaggaa tataaaacaa
    32461 aacccctgca catgcaaggg gtttcccaaa aaaccgtagg cggcaaactg aaaggccgtc
    32521 tgaatttcag acggcctatg ttgcggcgga tgttaagcta ttaagctatt tggttttcag
    32581 aggctttttc ttccattttc gggctacggc ttcaaattct tgaaaggccg tcggtgcgct
    32641 cctgatacgg cgtatttcaa aaatgaagct gcttaggttg tcccagtcac gtaacagcat
    32701 ggagtattcg aaatctttat acattttctc gtgcagtgct ccgcccaata cgcccgcaca
    32761 gacaaattcg cgctggttta aaactgtcag tatggcttca cggtctttct tcttgtccgg
    32821 ggtatccgat gtataggtgg cgagtatgca tccgtctgtt tttgccagcc cgtttactat
    32881 ggttatggct tcttgaaggg cggcattgtt acgttcggcc atgatcatgt cgatggtggc
    32941 gcgctttttg gcgttttctg tattcctcat gatgccgtaa gcggcaacaa aaacgccgat
    33001 aacagtcaat atcggcgttg ctatctgtat taggttgtca gtcattgccg tcccagccgt
    33061 ctgaaaggcg gaaatcacgg ctttccgaat aaatatgtcc cattgtcatc cccttaagct
    33121 gatgttgaaa ataaatcctt gcgtcggaat atacggcatt gcttgactat tttcaagatt
    33181 ctgtacctcg tgaaccggac tatacaaaaa aaccgccttc gtgtaaagcg gttcttaaat
    33241 cgcccgttaa ggcggacaca acgatagcca aactggaaca ggaggcggca aaggcgggtt
    33301 tgtccaaaac agccttgatt gaaaggctga ttggggattt gtaggcgttt gcagatacga
    33361 caaggggcgc attccgcgcc ccatcacacg cacggacggc ttgtcatcgc ctgtcgcccg
    33421 tgcgcggctg cccatatttc agaacagtct tgcaagcccc tttaagggaa cggttttatt
    33481 ctagtacagt ttgaatgcct tggcaacggc tgttttaatc gcctgaaaat cctcttcact
    33541 gattattgga atgcagcggt cgcgcccttt gggtttgtat cggtctaatc gtgccaatcc
    33601 gactgttgcc gtcatgtcgc attttgccca acattggatg tgcggcttgt ccggtaaggg
    33661 gtttccactc attttgtggt ggtagtccgc caaagggaca ggttctgtgc tgcttaaggg
    33721 tacgaccgtt accagtttgc cgttgtgcct gtttcgcgct atgacgacga cagggcgttt
    33781 cttgaccatt tccggttctt cataaccgcg aaagtcgcac atgataaccg aacgttccct
    33841 tggttggaat tttaaaggca ttagccgctc ctgacgatga caggctgcta ttatagcagt
    33901 tcttacacaa aaaaccgcct tcgtgtaaag cggttgcaaa aaagccttcc aataaaaatg
    33961 cggaaacggt tttttatttg cgtttccgca taatacaaac acacacacaa aaaaatcatt
    34021 ttccgttttt ggcaagcctc aaaacatcat tcccccaccg ttccagcgca tccttacgct
    34081 cctcccaaag ctccgagcgg ttgtaagccg tttgcgtcct cgtccccaac gaatgggcaa
    34141 gcagcttttc cgccacatca ttatccacct tcagaacctc gcgcaaataa gtacgcgcaa
    34201 gcaagcgcaa accgtgcgcc gtcgtatcca gccccgcccg ctgcatcgcc acgcgcggac
    34261 tttccttatt gatatgccct tgaaaattca cactttcaaa cacaaaccgc ccgttcacat
    34321 tcaacgcccg cgcctgatcc aacacccact gcatcgcccg cgacagcggc acatcatgcc
    34381 cccgccgctc ctttttccgt tcggcgggga tacgccaaac ctccccgtcc aactccgacc
    34441 actccatcaa cgccgcctcc tgaatccgcg tcattgtcaa cagcagccaa tagatacaaa
    34501 gccgcgttac aggatggata cgcaccctgc ccgcataaac cgcaaattca ttgcgctgct
    34561 ccaaaaaatc aatcaggcgc ggcaattcag acggactcaa cgccgccata ttccccgttt
    34621 tcgcccgttc aaacacaccc gaaccgattt gcgcgacagg gttgatttcc atcattcccg
    34681 aaccgaccgc aaacgcaaac accatcttca gactgttttt cgttttgcgc aacgtatcaa
    34741 cgataccgcg cgcctccatc acacgcagac agccgaccac atccgccgtc ctgacttgac
    34801 gaatatcaag attgccgata gccggaaaaa cccaccgctc aaaattccgc ataacctgtc
    34861 cggcatactt ttcagaccgc cccttcgacc aacgcacaaa ccaatcacgc gccaccttct
    34921 caaaagcaaa atccgcccgc accttcttat tgacgacatt ttccccgtgc gcccgttttc
    34981 ggcgcacctc ctcccgccat tcccgcgcat cggccagcga aaaatcagga taccgcccca
    35041 gcgaaattgt ctgctgcctt ccatcctgca caaacgacag cttccaactc cgcccgcccg
    35101 tcgggtagac ccacaaagcc agcccgcccc cgtccgacaa cttatacagc ttatcgcgcg
    35161 gcttcgcatt tttaacctga tttgccgaca gcggcgtaat gattttcgcc attatggtaa
    35221 tttcccattt atccaaaaat taccatacac attaccataa aaaaaatgca ataagaagat
    35281 gccgcaagat tgcaaatgat ttactttgac gcgttttgat agggcaaacc gatgattttt
    35341 atatggtaat tgacacaact tgaacaaaaa agaaccgccc tgaatcaggg cggttttgtt
    35401 ttctggcgga aacggtggga ttcgaaccca cggaggattt gcaccctcag cggatttcga
    35461 gtccgctgca ttcagcctct ctgccacgtt tccgataatg aagtaaaacc aaataaaaat
    35521 gccgatgctt tatgctactt catttttatt tggtttttga cctcaaggat tggcggaagc
    35581 ggtgagattc gaactcacgg agggctatca accctcgacg gttttcaaga ccgttgcatt
    35641 aaaccgctct gccacgcttc catcttcttg aagaagacga ataataatga agtttataca
    35701 ttttgccaag cacttttttc ggaaaatact taatttattg ttttcacttt atttgttccg
    35761 aacgcataaa cacccattca ctttcattgg aagccgcgtc attgaatgcg tagccttcgt
    35821 aattaaaatt tttcagcatt tcaggatcgg taatattgtg ttctgccgca tagcgcacca
    35881 ttaatccgcg cgcgcgcttg gcatagaaac tgatgatttt atatttaccg tttttttcgt
    35941 ctttaaatat cggggtaatc agccgcgccc gaagtgtttt cgtgttgacg gacttgaaat
    36001 attcctgtga ggcaaggttg acaagcgtat tgctgcctgc ttgggcaagc gtgtcattta
    36061 aaaggttggt aatgatgtct ccccaaaact catacaaatt cttcccgcgc aaattggcaa
    36121 atgccgtccc catttccaaa cggtaaggct gtatcaggtc cagtggacgc agaaggccgt
    36181 acaggccgga cagcaggcgt acgcgccctt gcagatattg tatttgatcg gtattcaatg
    36241 tgtttgcatc cataccttcg taaacatcgc cgttgaacat aaagaccgcc tgtttggcgt
    36301 tttccggcgt aaacggcgtg ttccattctg cattgcgctg cgcgtttaag agggcaattt
    36361 tgtcggaaac gtgcatcagt tcggcaatct gttgcggcgc aagctcgcgc aactgctgca
    36421 ttagaatgtc ggactctgcc agcaggtcgg gttgggtaaa ctcgctgaca ggggcagggt
    36481 ctttttcatt aaggttcttc gcaggggaaa ggacaaaaaa cataatctgc tcggtattgt
    36541 gtcaaacacg gggattttaa gtttaaacgt gtttgcgggc aagccgatta aaagtgaagt
    36601 atagtggatt aaatttaaac cagtacagcg ttgcctcgcc ttgccgtact atctgtactg
    36661 tcttcggctt cgtcgccttg tcctgatttt tgttaatcca ctataaatac cgttacagca
    36721 aattcaaccg tagaatattg aaaaatgccg tctgaacaaa agttcagacg gcatttccga
    36781 ttccttaccg atacagtgaa actatgtctt ccgcagcttt gacacaagtt gcgacatcgg
    36841 caaccaaagc gatacggaca taaccttccc cgggattgcc ctgttcggta tcccgtgcca
    36901 aaaagcgtcc gggtaatact tggatagcgg ctttttgcca taaattgcgt gcaaatgcca
    36961 aatcgtcgcc atcggggact ttcaaccaga tgtaaaacga ggcatccggt aatttgacgt
    37021 caaatacctg ttgcaggata ggaataaccc attcaaactt ttcctgatac aggcggcggt
    37081 tgtcaataac gtgctgttcg tcattccagg cggcaatact ggcacgctgt acgggaatgc
    37141 tcattgcgct gccgtgatag gttctgtaaa gcagaaaatt tttaagcagt tcggcatcgc
    37201 cggcgacaaa accggaacgc aggcctggaa cattggaccg cttggacaaa ctggtgaaca
    37261 taagcagttt ttgcctgctt cgccccaact gtgcagcggc ctgcaggcag cccaaaggct
    37321 tgttgccgtc gaaatagatt tcggaatagc attcgtccga ggcaataatg aaaccatatt
    37381 tgtcctgcaa atcaaaaact tctttccatc cgtccaaatc cagcacgctg ccgctggggt
    37441 tgttgggcga gcagacgaac accagtttgg tgcgtttcca aacctcttcg gaaatactac
    37501 gccaatcggg gttgaaagac ggcgcggggc aattggcaaa atggatttca ccgccgccca
    37561 aaagtgtcgc accttcataa atctgataaa agggattcgg gctgacgatt acgggtttga
    37621 ggccgtctga aacagggttc aacacggttt ggacaaaaga aaacaacgcc tccctacttc
    37681 ccaaaaccgg cagaatttcg gtgtcggaat tcagcgtcaa cccatcataa cggcgtttta
    37741 accagttcgc acacgcctga cgcagttcag gcaaaccggc cgtcagcgga tatttttcca
    37801 actcgtgcaa tgaggcggtc agcgcatccg taatgacttt cggtgtcgga tgtttcggtt
    37861 cgccgatatg cagtgggacg gcttccagac cttcgggggc ggaaatgccc tgcatcgctt
    37921 cacgcagtcg ggcaaaggga tagggtttga gttggttgag taaggtattc atgattttct
    37981 ccggttgtcg gtatatcgga agatatgccg tctgaacctg acgtgccctt cagacggcat
    38041 tttatattca atgcaaaccc gtactgccga agccgccctc accccggctg cttccgacaa
    38101 attcctcgac acgtttgaaa cgcgcctgca cgattggcac gacaaccatc tgcgcgatac
    38161 gctcaaacgg tttgacagta aacggttcgc tgcttctgtt ccataacgac accttcaatt
    38221 ccccttgata atcggagtca atcaaaccga ccaaattgcc caaaacaatg ccgtgtttat
    38281 gccccaagcc ggaacggggc agcaaaacgg cggcatatgc gggattcgcc aaataaattg
    38341 ccaaacccgt cggcacaaga aacgtttcac ccggctgcaa aacgacttcc tcatccaaac
    38401 aggcgcgcaa atctaaacct gcagaaccct tcgttgcata gacagggaca acatccgcca
    38461 tccgttcgtc caatactttc atttctactt caatattcat cgtcttgctc ctgcatacgg
    38521 ccggtttcaa agatgggaga ttatacacaa gccgtgttta cgctgaaaca cagcaaatag
    38581 gttttgtttt gaaatactcc gtctgtgtat aatgcccgac cttcttacat atcaatatta
    38641 atatgacaca cataagctcg ccccgtaacg aatttatacg cggcatcaaa gaaagttcgc
    38701 ccatgctgat cgggcttttg ccttgggcat taatactcgg tatgcagggt ggacaaaaag
    38761 gcatgagctg gctggaaatg ttgttgatga ccggtatgaa cttcgccggc ggctccgagt
    38821 ttgccacggt caacctgtgg gcggaacctc tgccgatact gcttatcgcc accgtaacct
    38881 ttatgattaa ttctcggcat atcctgatgg gggcggcact tgccccgcac ctgaaagaaa
    38941 taccgctgaa aaaagccgtg cccgcactgt tttttatgtg tgatgaaagc tgggcgatgg
    39001 cattctccga aatccaaaaa cggaaagcag ccggtttgcc cgcattcaat atgcct
//
LOCUS       DAXIFD010000003        38943 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.003, whole genome shotgun sequence.
ACCESSION   DAXIFD010000003 DAXIFD010000000
VERSION     DAXIFD010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 38943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38943
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.003"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(91..864)
                     /locus_tag="ACFOCN_000100"
     CDS             complement(91..864)
                     /locus_tag="ACFOCN_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HFC6969323.1"
                     /translation="MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQG
                     NATTGSGIDKAGLQSGVYQVLLGDADVKSAAVRGKEGGYAVLGANRALAGAEIELVQE
                     IAREVRLKNALKAVAEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGIS
                     DLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETVIPRNI
                     RLAEAPSHGMPVMAYDAQAKGTKAYLALADELMARVSGK"
     gene            complement(963..1586)
                     /gene="rsmG"
                     /locus_tag="ACFOCN_000101"
     CDS             complement(963..1586)
                     /gene="rsmG"
                     /locus_tag="ACFOCN_000101"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HFC6969324.1"
                     /translation="MERKERLRAGIAAMGLDISETAQDRLLAYVDLLKKWNKTYNLTA
                     LRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANT
                     KKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTGHLLKDG
                     GYWAAMKGVYPQGEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR"
     gene            complement(1682..2167)
                     /locus_tag="ACFOCN_000102"
     CDS             complement(1682..2167)
                     /locus_tag="ACFOCN_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969325.1"
                     /translation="MYVNEKYPYAALFAGLVFLTLPFALSVHDALAFAFGRAGLLVSV
                     SDGEFGWRGGWDGTVWFVFGVFAFLNVVVSAGLTKLAYKKMMRRHSRYALFLSGVAAC
                     AAAAVAWIFELLLGSAALGGLRGEAVSEYAFAVWLVSMLTLPKRLTRAPVQPVVFHRK
                     K"
     gene            2272..2347
                     /locus_tag="ACFOCN_000103"
     tRNA            2272..2347
                     /locus_tag="ACFOCN_000103"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2305..2307,aa:Thr,seq:cgt)
     gene            2421..3548
                     /locus_tag="ACFOCN_000104"
     CDS             2421..3548
                     /locus_tag="ACFOCN_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HFC6969326.1"
                     /translation="MNTSQRNRLVSRWLNSYERYRHRRLIHAVRLGGAVLFATALARL
                     LHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGN
                     LLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWFDSGLMRAMNVLIG
                     AAIAIAAAKLLPLKSTLMWRFMLADNLTDCSKMIAEISNGRRMTRERLEQNMVKMRQI
                     NARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSE
                     IRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLS
                     TNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG"
     gene            3729..4286
                     /gene="frr"
                     /locus_tag="ACFOCN_000105"
     CDS             3729..4286
                     /gene="frr"
                     /locus_tag="ACFOCN_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HFC6969327.1"
                     /translation="MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEY
                     WGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPM
                     PMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAV
                     QKLTDKYITEADKLLTAKEEDLMAI"
     gene            4342..5088
                     /locus_tag="ACFOCN_000106"
     CDS             4342..5088
                     /locus_tag="ACFOCN_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HFC6969328.1"
                     /translation="MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGL
                     DALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNM
                     RLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGV
                     SEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDET
                     ALDAAVASFQKRERRFGRTSEQLPIEQQRN"
     gene            5092..5889
                     /locus_tag="ACFOCN_000107"
     CDS             5092..5889
                     /locus_tag="ACFOCN_000107"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004605 - phosphatidate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HFC6969329.1"
                     /translation="MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYA
                     RMGGLCKIKTNHYLVATLVFGVVAYAGGWMLPNLVWYVVLAFWLAIMPLWLRFKWRLN
                     GGWQVYAVGWLLIMPFWFALVSLRPHPDNALPLLAVMGLVWIADVFAYFSGKAFGKHK
                     IAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGD
                     LLESWLKRAAGIKDSSKLLPGHGGVFDRTDSLIAVISVYAAMMSVLN"
     gene            5894..7129
                     /gene="ispC"
                     /locus_tag="ACFOCN_000108"
     CDS             5894..7129
                     /gene="ispC"
                     /locus_tag="ACFOCN_000108"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HFC6969330.1"
                     /translation="MPSENASDGIRYKVILIMTPQVLTILGSTGSIGESTLDVVSRHP
                     EKFRVFALAGHKQVEKLAAQCQTFRPEYAVVADAEHAARLEALLKRDGTATQVLHGAQ
                     ALVDVASADEVSGVMCAIVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARA
                     NGAAVLPVDSEHNAVFQVLPRDYAGRLNEHGIASIILTASGGPFLTADLNTFDSITPA
                     QAVKHPNWSMGRKISVDSATMMNKGLELIEAHWLFNCPPDKLEVVIHPQSVIHSMVRY
                     RDGSVLAQLGNPDMRTPIAYCLGLPERIDSGVGDLDFDALSALTFQKPDFDRFPCLKL
                     AYEAMNAGGAAPCVLNAANEAAVAAFLDGQIKFTDIAKTVAHCLSQDFSDGIGDIGGL
                     LAQDARTRAQARAFIGTLR"
     gene            7164..8504
                     /gene="rseP"
                     /locus_tag="ACFOCN_000109"
     CDS             7164..8504
                     /gene="rseP"
                     /locus_tag="ACFOCN_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HFC6969331.1"
                     /translation="MHTLLAFIFAILILVSLHEFGHYIVARLCGVKVVRFSVGFGKPF
                     FTRKRGDTEWCLAPIPLGGYVKMVDTREGEVSEADLPYAFDKQHPAKRIAIVAAGPLT
                     NLALAVLLYGLSFSFGVTELRPYVGTVEPDTIAARAGFQSGDKIQSVNGTPVADWGSA
                     QTEIVLNLEAGKVAVGVQTASGAQTVRTIDAAGTPEAGKIAKNQGYIGLMPFKITTVA
                     GGVEKGSPAEKAGLKPGDRLTAADGKPIASWQEWANLTRQSPGKKITLNYERAGQTHT
                     ADIRPDTVEQSDHTLIGRVGLRPQPDRAWDAQIRRSYRPSVIRAFGMGWEKTVSHSWT
                     TLKFFGKLISGNASVSHISGPLTIADIAGQSAELGLQSYLEFLALVSISLGVLNLLPV
                     PVLDGGHLVFYTAEWIRGKPLGERVQNIGLRFGLALMMLMMAVAFFNDVTRLLG"
     gene            8561..10954
                     /gene="bamA"
                     /locus_tag="ACFOCN_000110"
     CDS             8561..10954
                     /gene="bamA"
                     /locus_tag="ACFOCN_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HFC6969332.1"
                     /translation="MKLKQIASALMMLGISPLAFADFTIQDIRVEGLQRTEPSTVFNY
                     LPVKVGDTYNDTHGSAIIKSLYATGFFDDVRVETADGQLLLTVIERPTIGSLNITGAK
                     MLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
                     RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKF
                     AQDMEKVTDFYQNNGYFDFRILDTDIQTNEDKTKQTIKITVHEGGRFRWGKVSIEGDT
                     NEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKT
                     VDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELL
                     GYFDNVQFDAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLF
                     GTGKSAALRASRSKTTLNGSLSFTDPYFTADGVSLGYDVYGKAFDPRKASTSIKQYKT
                     TTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDGTDGSFK
                     GWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKT
                     FTLMLGGEVGIAGGYGRTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYG
                     GNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYG
                     AGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF"
     gene            11020..11520
                     /locus_tag="ACFOCN_000111"
     CDS             11020..11520
                     /locus_tag="ACFOCN_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HFC6969333.1"
                     /translation="MTRLTRAFAAALIGLCCTAGAHADTFQKIGFINTERIYLESKQA
                     RKIQKTLDSEFSARQDELQKLQREGLDLERQLAEGKLRNAKKAQAEEKWRGLVAAFRK
                     KQAQFEEDYNLRRNEEFASLQQNANRVIVKIAKQEGYDVILQNVIYVNTQYDVTDSVI
                     KEMNAR"
     gene            11553..12599
                     /gene="lpxD"
                     /locus_tag="ACFOCN_000112"
     CDS             11553..12599
                     /gene="lpxD"
                     /locus_tag="ACFOCN_000112"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HFC6969334.1"
                     /translation="MIPATYTLSQITARLGGEWRGEDISVTAVRPLADAQAEHISFLA
                     NPKYKAEVHDSSAGAVIVSAKAADGFEGRNLIVADDPYLYFAKVARLFSPVVKARGGI
                     HPTAVVEPSATVPASCEIGANAYIGANTVLGEGCRILANAVVQHDCKLGDEVVLHPNA
                     VVYYGCTLGRRVEIHSGAVIGADGFGLAFAGDSWFKIPQTGAVTLGDDVEIGSNTNID
                     RGAMSDTTVGNGTKIDNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSYCIIGGGVGTV
                     GHIEIADKTTIGGGTSVTHSITESGKHLAGIFPMSTHKEWARNAVYIHRLSEMNKRLK
                     TLEQQLSDAGQDSK"
     gene            12633..13082
                     /gene="fabZ"
                     /locus_tag="ACFOCN_000113"
     CDS             12633..13082
                     /gene="fabZ"
                     /locus_tag="ACFOCN_000113"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HFC6969335.1"
                     /translation="MDVQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVS
                     INEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKR
                     QVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAKRVV"
     gene            13289..13969
                     /locus_tag="ACFOCN_000114"
     CDS             13289..13969
                     /locus_tag="ACFOCN_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HFC6969336.1"
                     /translation="MERYKNAVGEDKAAELYLLNLSLSRELFHVVSIFEIVLRNKIDI
                     CLQQAFKDRNWLYNSIQPQTNPALKYQGCFLRNGTKESAELIKVALSKIQNNSGGKFD
                     HNQLVAGLGFGFWRYLFAGGKDAQFDATGKVLMKVFPKKPKSTPSVQYNQKWIFRELS
                     NINKFRNRLAHHEPICFKGAIKDTNYARNIHQSIFELLNYMDVDTASVFSHFSDQVIA
                     VCDEIDKL"
     gene            14012..14788
                     /gene="lpxA"
                     /locus_tag="ACFOCN_000115"
     CDS             14012..14788
                     /gene="lpxA"
                     /locus_tag="ACFOCN_000115"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HFC6969337.1"
                     /translation="MTLIHPTAVIDPKAELDSSVKVGAYTVIGPNVQIGANTEIGPHA
                     VINGHTSIGENNRIFQFASLGEIPQDKKYRDEPTKLIIGNGNTIREFTTFNLGTVTGI
                     GETRIGDDNWIMAYCHLAHDCVVGNHTIFANNASLAGHVTIGDYVVLGGYTLVFQFCR
                     IGDYAMTAFAAGVHKDVPPYFMASGYRAEPAGLNSEGMRRNGFTAEQISAVKDVYKTL
                     YHRGIPFEEAKADILRHAETQAELAVFRDFFAQSARGIIR"
     gene            15146..16537
                     /locus_tag="ACFOCN_000116"
     CDS             15146..16537
                     /locus_tag="ACFOCN_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6969338.1"
                     /translation="MQVFLDNPKAFFETVSGWVWGPVMLMLLVGTGILLTVLLKGLQF
                     TMLGYALKQAFVPPKKHKSGEGHEGDISHFAALMTALSATIGTGNIAGVATAVVTGGP
                     GAVFWMWMTAIFGMATKYGEGVLAVKYRVNNSKGEMSGGPMYYIEKGLGKNWKWMALA
                     FALFGTFASFGIGSSVQSNSVAQAVQTSFGIEPAYTGITLTVLTAVVVLGGIKGIAKA
                     ASFIVPAMAVFYVLGGLSIIAINSDALMPAVKLIFSDAFSAQAVAGGAIGTVIRYGVA
                     RGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTGTFLDTIVVCSITGIVLVMGLLGA
                     GGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIFFAYSTILGWCYYGEKCAVYVF
                     GEKFAGLYRVGYVSSVMLGTVLSLDLVWLASDTFNGLMALPNLIALLLMAKVIVNETR
                     DFKQKITNGELPH"
     gene            16606..17862
                     /locus_tag="ACFOCN_000117"
     CDS             16606..17862
                     /locus_tag="ACFOCN_000117"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055130 - D-alanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HFC6969339.1"
                     /translation="MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAKGVAMETSFANA
                     GQLSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWRMLQNCTAAHYQ
                     TNKERMVRISEYSREMFRRFEAQTGMNFEERKKGTLQIFRQTKEVEAAEQDIAVLERY
                     GVPYRRLKPEECAEFEPALARVTAKIAGGLHLPADATGDCHLFTENLYKLCQEKGVQF
                     HFNQTISRIDHNGLRIKAVETETGRFEADAVVCALGCFSRTVLAQLDLDLPIYPVKGY
                     SLTLPVTNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLAL
                     VVNDLFPEGGDLSQALFWSGLRPMTPDSTPLIGRTRFENLFLNTGHGTLGWTMSLGSA
                     KLTADIVSGKDTEIRSDDLSLSRYQA"
     gene            18043..18852
                     /gene="zupT"
                     /locus_tag="ACFOCN_000118"
     CDS             18043..18852
                     /gene="zupT"
                     /locus_tag="ACFOCN_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HFC6969340.1"
                     /translation="MPDFSMSNLAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFG
                     LAFAGGAMVYVSLTEIFSKSSEAFAEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNP
                     HETLDAQDPSFQESKRRHIARVGMMAAFAITAHNFPEGLATFFATLENPAVGMPLALA
                     IAIHNIPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFG
                     SVFGVIAGVMVFLALDELLPAAKRYSDGHETVYGLTMGMAVIAVSLVLFHF"
     gene            18949..21786
                     /locus_tag="ACFOCN_000119"
     CDS             18949..21786
                     /locus_tag="ACFOCN_000119"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HFC6969341.1"
                     /translation="MLDKYSPAEIESKHYQNWEEQGYFQPDMDLTKPSFSIQLPPPNV
                     TGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRH
                     DLGREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDDVRAETVTEVFVRLY
                     EQGLIYRGKRLVNWDPVLGTAVSDLEVESVEEQGSMWHIRYPLADNPAEAVIVATTRP
                     ETLLGDVAVAINPEDERYTHLIGKELILPLTGRTIPVIADEYVEKDFGTGCVKITPAH
                     DFNDYEVGKRHDTRLVNVFDLEAKVLANAEVFNFKGEAQPSFALPEKYAGLDRFAARK
                     QMVADLQEQGFLVEIKAHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDSEFK
                     GLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDNEG
                     NVYVARNQEEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNV
                     LVTGYEIIFFWVARMIMMTTHFTGKVPFKDVYIHGIVRDHEGKKMSKSEGNVIDPVDL
                     IDGIDLEKLLVKRTTGLRKPETAPKVEEASRKLFPEGIPSMGADALRFTMASYASLGR
                     SVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATATEPRGYSFPDMWIVDRL
                     NQTIEQVTQAYETYRFDLAAETLYSFMWNDYCDWYLELAKVQLQTGCASRQRATRHTL
                     LRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPEADGGDIVQTAFEQ
                     MTVLQDLIGAVRNLRGEMGIQPNVKAPLFVESTDDLADYLKYLPMMTRLIEAQQVAAL
                     PESEDAPVAVCNGARLMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKA
                     PAHLVEKDKADLAELEDKMAKVQNQLAKLKD"
     gene            21928..22119
                     /locus_tag="ACFOCN_000120"
     CDS             21928..22119
                     /locus_tag="ACFOCN_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969342.1"
                     /translation="MLIHYTWHCIGTDENIHSDAKVEYLQDGSFRGDAILKIDDDGNI
                     LAYRVVGSGKWRFENNACA"
     gene            complement(22116..23036)
                     /gene="oxyR"
                     /locus_tag="ACFOCN_000121"
     CDS             complement(22116..23036)
                     /gene="oxyR"
                     /locus_tag="ACFOCN_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator OxyR"
                     /protein_id="HFC6969343.1"
                     /translation="MTLTELRYIVAVAQERHFGRAARRCFVSQPTLSIAIKKLEEELA
                     VSLFDRSSNDIITTEAGERIVAQARKVLEEAELIRHLANEEQNELEGAFKLGLIFTVA
                     PYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPL
                     YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQ
                     GLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAY
                     RRNFVRPKALSAMKAAIMQSQLHGVSFIRD"
     gene            complement(23040..23303)
                     /gene="minE"
                     /locus_tag="ACFOCN_000122"
     CDS             complement(23040..23303)
                     /gene="minE"
                     /locus_tag="ACFOCN_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HFC6969344.1"
                     /translation="MSLIEFLFGRKQKTATVARDRLQIIIAQERAQEGQAPDYLPTLR
                     KELMEVLSKYVNVSLDNIRISQEKQDGMDVLELNITLPEQKKV"
     gene            complement(23307..24122)
                     /gene="minD"
                     /locus_tag="ACFOCN_000123"
     CDS             complement(23307..24122)
                     /gene="minD"
                     /locus_tag="ACFOCN_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HFC6969345.1"
                     /translation="MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLR
                     NLDLIMGCERRVVYDLINVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGV
                     EKVMQELSGKKMGFEYIICDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILG
                     ILQSKSHKAEQGGSVKEHLLITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNV
                     LQASNSGEPVIHQDSVAASEAYKDVIARLLGENREMRFLEAEKKSFFKRLFGG"
     gene            complement(24150..24863)
                     /gene="minC"
                     /locus_tag="ACFOCN_000124"
     CDS             complement(24150..24863)
                     /gene="minC"
                     /locus_tag="ACFOCN_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA];
                     GO_process: GO:1901891 - regulation of cell septum
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HFC6969346.1"
                     /translation="MMVYIMNAFDIKSTKMDVLSISLHTSDLFDLEDVLVKLGKKFQE
                     SGVVPFVLDVQEFDYPESLDLAALVSLFSRHGMQILGLKHSNERWAAAAMKYHLLFCL
                     SHSENVKELGQVEVQNTEDGQKARKTVLITSPVRTGQQVYAEDGDLIVTGAVSQGAEL
                     IADGNIHIYAPMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPNHLHKQ
                     PVQILLQDNRLVISAIGSE"
     gene            complement(25010..25378)
                     /gene="rplQ"
                     /locus_tag="ACFOCN_000125"
     CDS             complement(25010..25378)
                     /gene="rplQ"
                     /locus_tag="ACFOCN_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HFC6969347.1"
                     /translation="MRHRNGNRKLNRTSSHRAAMLRNMANSLLTHETIVTTLPKAKEL
                     RRVVEPLITLGKKPSLANRRLAFDRTRDRDVVVKLFGDLGPRFTARNGGYVRVLKYGF
                     RKGDNAPLALVELVDKPAAE"
     gene            complement(25402..26388)
                     /gene="rpoA"
                     /locus_tag="ACFOCN_000126"
     CDS             complement(25402..26388)
                     /gene="rpoA"
                     /locus_tag="ACFOCN_000126"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HFC6969348.1"
                     /translation="MQNSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALR
                     RILLSSMNGFAPTEVAIAGVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVL
                     KKSGSGVVSAGDIELPHDVEILNPGHVICHLADNGQIEMEIKVEQGRGYQSVSGRQVV
                     RDENRQIGAIQLDASFSPISRVSFEVEPARVEQRTDLDKLVLDIETDGSIDPEEAVRS
                     AARILIDQMSIFADLQGTPVEEVEEKAPPIDPVLLRPVDDLELTVRSANCLKAEDIYY
                     IGDLIQRTETELLKTPNLGRKSLNEIKEVLASKGLTLGSKLEAWPPVGLEKP"
     gene            complement(26414..27034)
                     /gene="rpsD"
                     /locus_tag="ACFOCN_000127"
     CDS             complement(26414..27034)
                     /gene="rpsD"
                     /locus_tag="ACFOCN_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HFC6969349.1"
                     /translation="MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK
                     KPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVV
                     YRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALG
                     LATQIGLPGWVSVDADKLEGVFKNMPDRSELTGDINEQLVVEFYSK"
     gene            complement(27054..27449)
                     /gene="rpsK"
                     /locus_tag="ACFOCN_000128"
     CDS             complement(27054..27449)
                     /gene="rpsK"
                     /locus_tag="ACFOCN_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HFC6969350.1"
                     /translation="MAKANTASRVRKKVRKTVSEGIVHVHASFNNTIITITDRQGNAL
                     SWATSGGAGFKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRAL
                     NALGFKITSITDVTPLPHNGCRPPKKRRI"
     gene            complement(27469..27831)
                     /gene="rpsM"
                     /locus_tag="ACFOCN_000129"
     CDS             complement(27469..27831)
                     /gene="rpsM"
                     /locus_tag="ACFOCN_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HFC6969351.1"
                     /translation="MARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK
                     AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRT
                     RTNARTRKGPRKAIAGKK"
     gene            complement(27897..28010)
                     /gene="rpmJ"
                     /locus_tag="ACFOCN_000130"
     CDS             complement(27897..28010)
                     /gene="rpmJ"
                     /locus_tag="ACFOCN_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HFC6969352.1"
                     /translation="MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG"
     gene            complement(28031..28249)
                     /gene="infA"
                     /locus_tag="ACFOCN_000131"
     CDS             complement(28031..28249)
                     /gene="infA"
                     /locus_tag="ACFOCN_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HFC6969353.1"
                     /translation="MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHY
                     IRISPGDKVTVELTPYDLTRARIVFRAR"
     gene            complement(28254..29564)
                     /gene="secY"
                     /locus_tag="ACFOCN_000132"
     CDS             complement(28254..29564)
                     /gene="secY"
                     /locus_tag="ACFOCN_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HFC6969354.1"
                     /translation="MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAV
                     ALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKAL
                     KKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
                     TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVF
                     GALLLIYLVVYFESAQRKIPIHYAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSII
                     LFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFCYFYTALVFSPKEM
                     AENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFY
                     LGGTSLLILVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK"
     gene            complement(29576..30010)
                     /gene="rplO"
                     /locus_tag="ACFOCN_000133"
     CDS             complement(29576..30010)
                     /gene="rplO"
                     /locus_tag="ACFOCN_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HFC6969355.1"
                     /translation="MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGG
                     FHKVGFEGGQMPLQRRLPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIA
                     STVSNVKVIASGEISKAVALKGIKVTKGARAAIEAVGGKIEM"
     gene            complement(30012..30197)
                     /gene="rpmD"
                     /locus_tag="ACFOCN_000134"
     CDS             complement(30012..30197)
                     /gene="rpmD"
                     /locus_tag="ACFOCN_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HFC6969356.1"
                     /translation="MAEQKKIRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTP
                     ENRGMINKISYLLKVES"
     gene            complement(30190..30708)
                     /gene="rpsE"
                     /locus_tag="ACFOCN_000135"
     CDS             complement(30190..30708)
                     /gene="rpsE"
                     /locus_tag="ACFOCN_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HFC6969357.1"
                     /translation="MAKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDG
                     DGRIGMGKGKSKEVPVAVQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAK
                     EGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRG
                     LTVEDILGVNHG"
     gene            complement(30727..31080)
                     /gene="rplR"
                     /locus_tag="ACFOCN_000136"
     CDS             complement(30727..31080)
                     /gene="rplR"
                     /locus_tag="ACFOCN_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HFC6969358.1"
                     /translation="MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEG
                     DKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGR
                     VKALAEAARENGLSF"
     gene            complement(31094..31627)
                     /gene="rplF"
                     /locus_tag="ACFOCN_000137"
     CDS             complement(31094..31627)
                     /gene="rplF"
                     /locus_tag="ACFOCN_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HFC6969359.1"
                     /translation="MSRVAKNPVTVPAGVEVKFGTEALVIKGKNGELSFPLHSDVAIE
                     FNDGKLAFVANNSSKQANAMSGTARALVSNMVKGVSEGFEKRLQLIGVGYRAQAQGKI
                     LNLSLGFSHPIVYEMPEGVSVQTPSQTEIVLTGSDKQVVGQVAAEIRAFRAPEPYKGK
                     GVRYVGEVVVMKEAKKK"
     gene            complement(31641..32033)
                     /gene="rpsH"
                     /locus_tag="ACFOCN_000138"
     CDS             complement(31641..32033)
                     /gene="rpsH"
                     /locus_tag="ACFOCN_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HFC6969360.1"
                     /translation="MSMHDPISDMLTRIRNAQRANKAAVAMPSSKLKCAIAKVLKEEG
                     YIEDFAVSSDVKSILEIQLKYYAGRPVIEQIKRVSRPGLRIYKASSEIPSVMNGLGIA
                     IVSTSKGVMTDRKARSQGVGGELLCIVA"
     gene            complement(32049..32354)
                     /gene="rpsN"
                     /locus_tag="ACFOCN_000139"
     CDS             complement(32049..32354)
                     /gene="rpsN"
                     /locus_tag="ACFOCN_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HFC6969361.1"
                     /translation="MAKKALINRNLKRQALAKKYAAKRAAIKAVINDSNATEEERFEA
                     RLRFQSIPRNAAPVRQRRRCALTGRPRGTFRKFGLGRIKIREIAMRGEIPGVVKASW"
     gene            complement(32357..32896)
                     /gene="rplE"
                     /locus_tag="ACFOCN_000140"
     CDS             complement(32357..32896)
                     /gene="rplE"
                     /locus_tag="ACFOCN_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HFC6969362.1"
                     /translation="MARLREFYKETVVPELVKQFGYKSVMEVPRIEKITLNMGVGEAV
                     ADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPVGCKVTLRRDQMFEFLDR
                     LITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDKIDALRGLNITITTTA
                     KTDEEAKALLSLFKFPFKG"
     gene            complement(32906..33229)
                     /gene="rplX"
                     /locus_tag="ACFOCN_000141"
     CDS             complement(32906..33229)
                     /gene="rplX"
                     /locus_tag="ACFOCN_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HFC6969363.1"
                     /translation="MNKIIKGDRVVVIAGKDKGKQGQVVRVLGDKVVVEGVNVVKRHQ
                     KPNPMRGIEGGIITKEMPLDISNIAILNPETNKADRVGIKLIENEGKVKRVRFFKSNG
                     SIIGA"
     gene            complement(33241..33609)
                     /gene="rplN"
                     /locus_tag="ACFOCN_000142"
     CDS             complement(33241..33609)
                     /gene="rplN"
                     /locus_tag="ACFOCN_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HFC6969364.1"
                     /translation="MIQMQTILDVADNSGARRVMCIKVLGGSKRRYASVGDIIKVAVK
                     DAAPRGRVKKGDVYNAVVVRTAKGVRRPDGALIKFDNNAAVLLNNKLEPLGTRIFGPV
                     TRELRTERFMKIVSLAPEVL"
     gene            complement(33831..34094)
                     /gene="rpsQ"
                     /locus_tag="ACFOCN_000143"
     CDS             complement(33831..34094)
                     /gene="rpsQ"
                     /locus_tag="ACFOCN_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HFC6969365.1"
                     /translation="MSETKNVRTLQGKVVSDKMDKTVTVLVERKVKHPLYGKIIRLST
                     KIHAHDENNQYGIGDVVVISESRPLSKTKSWVVSELVEKARSI"
     gene            complement(34094..34285)
                     /gene="rpmC"
                     /locus_tag="ACFOCN_000144"
     CDS             complement(34094..34285)
                     /gene="rpmC"
                     /locus_tag="ACFOCN_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HFC6969366.1"
                     /translation="MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELK
                     RVRRDIARIKTVLTEKGAK"
     gene            complement(34285..34701)
                     /gene="rplP"
                     /locus_tag="ACFOCN_000145"
     CDS             complement(34285..34701)
                     /gene="rplP"
                     /locus_tag="ACFOCN_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HFC6969367.1"
                     /translation="MLQPTRLKYRKQQKGRNTGIATRGNKVSFGEFGLKAVGRGRLTA
                     RQIEAARRAMTRHIKRGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKV
                     LYEMDGVPEELAREAFELAAAKLPIPTTFVVRQVGQ"
     gene            complement(34685..35377)
                     /gene="rpsC"
                     /locus_tag="ACFOCN_000146"
     CDS             complement(34685..35377)
                     /gene="rpsC"
                     /locus_tag="ACFOCN_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HFC6969368.1"
                     /translation="MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLR
                     QKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVN
                     IEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGA
                     DIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSKPEHESK
                     QRKAGRRNAAAN"
     gene            complement(35387..35716)
                     /gene="rplV"
                     /locus_tag="ACFOCN_000147"
     CDS             complement(35387..35716)
                     /gene="rplV"
                     /locus_tag="ACFOCN_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HFC6969369.1"
                     /translation="MRVNAQHKNARISAQKARLVADLIRGKDVAQALNILAFSPKKGA
                     ELIKKVLESAIANAEHNNGADIDELKVVTIFVDKGPSLKRFQARAKGRGNRIEKQTCH
                     INVTVGN"
     gene            complement(35725..36003)
                     /gene="rpsS"
                     /locus_tag="ACFOCN_000148"
     CDS             complement(35725..36003)
                     /gene="rpsS"
                     /locus_tag="ACFOCN_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HFC6969370.1"
                     /translation="MARSLKKGPYVDLHLLKKVDAARASNDKRPIKTWSRRSTILPDF
                     IGLTIAVHNGRTHVPVFISDNMVGHKLGEFSLTRTFKGHLADKKAKKK"
     gene            complement(36010..36843)
                     /gene="rplB"
                     /locus_tag="ACFOCN_000149"
     CDS             complement(36010..36843)
                     /gene="rplB"
                     /locus_tag="ACFOCN_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HFC6969371.1"
                     /translation="MAIVKMKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRN
                     NNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERR
                     YIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGA
                     SAVLLAKEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIRP
                     TVRGVVMNPVDHPHGGGEGRTGEAREPVSPWGTPAKGYRTRNNKRTDNMIVRRRYSNK
                     G"
     gene            complement(36849..37163)
                     /gene="rplW"
                     /locus_tag="ACFOCN_000150"
     CDS             complement(36849..37163)
                     /gene="rplW"
                     /locus_tag="ACFOCN_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HFC6969372.1"
                     /translation="MNQQRLTQVILAPIVSEKSNVLAEKRNQMTFKVLANAAKPEIKA
                     AVELLFGVQVASVTTVTTKGKTKRFGRTLGRRSDVKKAYVSLAAGQELDLEAAAAAAD
                     KE"
     gene            complement(37160..37780)
                     /gene="rplD"
                     /locus_tag="ACFOCN_000151"
     CDS             complement(37160..37780)
                     /gene="rplD"
                     /locus_tag="ACFOCN_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HFC6969373.1"
                     /translation="MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANAR
                     SGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVN
                     RKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTKQLDE
                     NVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQWV"
     gene            complement(37780..38424)
                     /gene="rplC"
                     /locus_tag="ACFOCN_000152"
     CDS             complement(37780..38424)
                     /gene="rplC"
                     /locus_tag="ACFOCN_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HFC6969374.1"
                     /translation="MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTD
                     GYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS
                     MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFP
                     GKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA"
BASE COUNT        10303 a        10705 c         8769 g         9166 t
ORIGIN      
        1 atgacgatat aagtattttt attttaatcc gccatattaa cgcacccggc caaacagcat
       61 aaaggcacgg gcagcccgat ttggattgac ctatttcccc gacaccctcg ccatcagctc
      121 gtccgccaag gcaagatacg ccttggtacc ctttgcctgc gcgtcgtaag ccatcaccgg
      181 cataccgtgg ctcggtgctt ccgcaaggcg gatattgcgc gggatgacgg tttcaaacag
      241 caaatccccg aaatggctgc gcaactgttc gctgacttcg gcaaccagcc tgctgcggct
      301 gtcgtacatc gtgcgcacga tgcccgtgat gtccaaatcg ggattgaccg cctgacggat
      361 tttacgcacg gtcgcaatca aatcggaaat cccctcaagc gcgtaatatt cgcacaacat
      421 cggcacaatc acgccgcccg ccgccaccaa gccgttaagc gtcaacagcg tcagcgaagg
      481 cggacagtcg atcaggataa agtcgtaatc ttccgccact gccttgagtg cgtttttcaa
      541 acgcacttcc cgggcgattt cctgcaccag ttcgatttcc gcgccggcaa gtgcgcggtt
      601 cgcacccaac acagcgtatc cgccctcttt gccgcgtacc gccgccgatt tcacgtccgc
      661 atcgcccaat aagacctgat aaacgccgga ctgcaaaccc gccttgtcga taccgctgcc
      721 cgtcgtcgca ttgccctgcg gatccaaatc gaccaccagc acgcgtttgc cgcgcgatgc
      781 cagcgaagcc gccaaattta ccgtcgtcgt cgttttgccc acaccgccct tctgattggc
      841 gatggcaagg atgttcgcac tcatgtcccg cccgtgtccc gtctgatgtt gaaaaaagaa
      901 aaacagtgcg gaattttacc tttatccgca caaaaaaggt attcatgccg tctgaagtgc
      961 gctcaacgct tgctcaggat gacgatatgg cgttccgcat ccaagcctgg cacgtcgagc
     1021 ctttggactt tttcaacgca cacatcctgc ggcaggcggc cgatttcccc ctgcggatac
     1081 acgcccttca tcgccgccca gtatccgccg tctttcaaca gatgccccgt ccacgacaca
     1141 aagtccgcca gttctgcaaa cgcacggctg gtaaccacat cggcacgcac gtccgaaacc
     1201 gcctccacgc gtccggatac cacgcgcaca ttgtccaacc ccaactcgat aaccgcctgc
     1261 tgtaaaaaag ccgttttctt cgtatttgca tccaaaaggg ttatctgcac atccggacgg
     1321 cacaccgccg ccggaatgcc gggctgaccg ccgcccgaac cgacatccag catcgtttgc
     1381 acaccctcga tatggggcag cagcgtcagg ctgtccaaaa gatgatggac aatcattttt
     1441 tcctcgtcgc gcagggcggt cagattgtag gttttgttcc actttttcaa caaatccaca
     1501 taggccaaaa gcctgtcctg cgccgtttcc gaaatatcca gccccatcgc ggcaatgcct
     1561 gcacgcaggc gttctttgcg ttccatatct gcttcctgtc catattcagg cgtaatgtta
     1621 gcggaaaaac atgccatctg aaaccgcgtg tcggggttca gacggcattt cccgttccaa
     1681 cctatttttt cctgtgaaac accaccggct gcaccggcgc gcgcgtcagg cgtttgggca
     1741 gcgtcagcat agacaccagc cacacggcaa acgcatattc cgacaccgcc tccccgcgca
     1801 gcccgcccaa ggcggcactg cccaacaaca gctcgaaaat ccacgcgacc gcagcagccg
     1861 cgcaagccgc cacgcccgac agaaacagcg cgtaacgcga atgccgccgc atcatctttt
     1921 tgtacgccag tttcgtcagg cccgccgaca caaccacatt caaaaacgca aacacaccga
     1981 acacaaacca aacagtgccg tcccaaccgc cacgccagcc gaattcgccg tccgacaccg
     2041 acaccagcag ccccgcccgt ccgaacgcaa atgccaaggc atcatgcacc gacagtgcga
     2101 acggcagcgt caaaaacacc agccccgcaa acaaagccgc atagggatat ttctcgttca
     2161 catacatcac cgactctcct cacgaagcaa accgcattat accgtgcaaa actttgccag
     2221 cagcccgaaa agttgcagaa acaaccgttc atatatatca taacgaaaaa agccggtgta
     2281 gctcagtcgg tagagcagcg cattcgtaac gcgaaggtcg ggggttcgat tcccttctcc
     2341 ggcaccaata ccaagcacag accctccctt cctcgggaag cctgtgcttt ttcacatttc
     2401 cgcttcagac ggcaaccgat atgaacacct cgcaacgcaa ccgcctcgtc agccgctggc
     2461 tcaactccta cgaacgctac cgccaccgcc gcctcataca cgccgtgcgg ctcggcgggg
     2521 ccgtcctgtt cgccaccgca ctcgcccggc tgctccacct ccaacacggc gaatggatag
     2581 gcatgaccgt cttcgtcgtc ctcggcatgc tccagtttca aggggcgatt tactccaagg
     2641 cggtggaacg tatgctcggc acggtcatcg ggctgggcgc gggtttgggc gttttatggc
     2701 tgaaccagca ttatttccac ggcaacctcc tcttctacct caccgtcggc acggcaagcg
     2761 cactggccgg ctgggcggcg gtcggcaaaa acggctacgt ccctatgctg gcggggctga
     2821 cgatgtgcat gctcatcggc gacaacggca gcgaatggtt cgacagcggc ctgatgcgcg
     2881 ccatgaacgt cctcatcggc gcggccatcg ccattgccgc cgccaaactg ctgccgctga
     2941 aatccacact gatgtggcgt ttcatgcttg ccgacaacct gaccgactgc agcaaaatga
     3001 ttgccgaaat cagcaacggc aggcgtatga cgcgcgaacg tttggagcag aatatggtta
     3061 aaatgcgcca aatcaacgca cgcatggtca aaagccgcag ccacctcgcc gccacatcgg
     3121 gcgaaagccg catcagcccc gccatgatgg aagccatgca gcacgcccac cgtaaaattg
     3181 tcaacaccac cgagctgctc ctgaccactg ccgccaagct gcaatctccc aaactcaacg
     3241 gcagcgaaat ccggctgctc gaccgccact tcacactgct ccaaaccgac ctgcaacaaa
     3301 ccgtcgccct tatcaacggc agacacgccc gccgcatccg catcgacacc gccatcaacc
     3361 ccgaactgga agccctcgcc gaacacctcc actaccaatg gcagggcttc ctctggctca
     3421 gcaccaatat gcgtcaggaa atttccgccc tcgtcatcct gctgcaacgc acccgccgca
     3481 aatggctgga tgcccacgaa cgccaacacc tgcgccaaag cctgcttgaa acacgggaac
     3541 acggctgacg gtcggacacg atgccgtctg aaacgcctgc cgcttcagac ggcatcccca
     3601 atccgcctgc cttgtcgtca tgcccgaata acggtactat tcgcagttaa cagttttcat
     3661 gccgtctgaa aggtttgaag cgcgtttcag acggctgccc gcccacctta tcccaccgaa
     3721 agaacaatat gatcaacgat attcaaaaaa cagccgaagg caaaatgcag cgttcggtcg
     3781 aagtactgaa agaaaatctg gcgaaagtgc gtaccggccg cgcgcatacc ggcctgctcg
     3841 accaagtgga agtcgaatac tggggcagca tggtccccgt cagccaagtt gccaacgtaa
     3901 cgcttctgga cgcgcgcacc atcggcgtga aaccgtttga gggcaatatg gcggccaaag
     3961 tcgagaaagc catccgcgat tcaaacttgg ggctgaaccc ggcagctgtc ggcgacctga
     4021 tccgcgtgcc gatgcccatg ctgaccgagg aacgccgcaa agacctgatt aaagtcgtac
     4081 gcggcgaagc ggaagaaggc cgcgtctcta tccgcaacgt gcgccgcgat gccaacgacc
     4141 acatcaaaaa actcctcaaa gacaaagaaa tttccgaaga cgaggcacgt cgcggcgaag
     4201 aagcggttca aaaactgacc gacaaataca ttaccgaagc cgacaaactc ctgactgcca
     4261 aagaagaaga tttgatggca atttaacctg cacggttcgg cgttcagacg gcatttgaat
     4321 gccgaaccgc gaaaggcaga catgaaaagc agcacgcagg ccgttttgga acacaccgcc
     4381 attcccaagc atatcgccgt gattatggac ggcaacggcc gttgggcgaa aaaacgtttc
     4441 ctcccgcgca taatgggaca caaacgcggt ttggacgcat tggaaaatat ggtgaagcat
     4501 tgcgccaaac tgggtgtgca atatctgacc gtgtttgcct tttcaaccga aaactggcgc
     4561 cgccccgaag acgaagtttc gttcctgatg gggctgtttt tacaggcttt gcaaaaacag
     4621 gtacgccgtc tgcacgaaaa caatatgcgc ctgaaaatac tgggcagccg cgaacgcttc
     4681 aaccggcaga ttctgcaagg catcgaagaa gcggaggcgt tgacggcaaa caataccggc
     4741 ctgaccctga gcattgccgc cgattacggc ggccgctggg atattttgca ggcggcaaac
     4801 aaactgattg ccgaaggcgt atccgagatt acagaagaca cgctggcgaa acacttgatg
     4861 ctgggcgatg caccggaacc ggatttgttc atccgcaccg gcggagaaac gcgcatcagc
     4921 aatttcctgc tctggcagat ggcgtatgca gaactgtatt tcaccgacat cctgtggcct
     4981 gatttcgacg aaaccgcctt agatgccgcc gtcgcttcgt tccaaaaacg cgaacggcgg
     5041 ttcggacgca cctccgagca actgcctatc gaacagcaaa ggaactaaat tatgctgaaa
     5101 caacgggtaa taaccgctat gtggctgctg ccgctgatgc tgggcatgct gttttacgcg
     5161 ccgcaatggt tgtgggctgc attttgcgga ctgattgccc tgattgcctt gtgggaatat
     5221 gcccgtatgg gcggcttgtg caaaatcaaa accaaccatt acctcgtcgc aaccttggtt
     5281 ttcggcgtgg ttgcctatgc gggcggctgg atgctgccta atttggtttg gtatgttgtt
     5341 ttggcatttt ggctcgccat catgccttta tggttgagat ttaaatggag gctcaacggc
     5401 ggttggcagg tttatgccgt cggctggctt ctgatcatgc cgttttggtt cgcgctcgta
     5461 tccctgcgcc cgcatcccga taatgccctg ccgctgctcg ccgtcatggg tttggtgtgg
     5521 attgccgatg ttttcgcgta tttcagcggc aaggcgttcg gcaaacacaa aatcgcaccg
     5581 gcaatcagcc ccggcaagag ctgggaaggc gcaatcggcg gcgcggtttg cgtggccgtg
     5641 tacatgaccg ccgtacgaag tgccggctgg ctggcattcg atacaggctg gttcgatacc
     5701 gtgttaatcg gtttggtgtt gaccgttgtc agcgtatgcg gcgacctttt ggaaagctgg
     5761 ctcaagcgcg cggcaggcat caaagacagc agcaagctac tgccaggaca cggcggcgtg
     5821 ttcgaccgta ccgacagcct gattgccgtt atcagcgtct atgcggcgat gatgtcggtt
     5881 ttaaattgat tctatgccgt ctgaaaacgc ttcagacggc atccggtata aagttatcct
     5941 cattatgaca ccacaagtcc tgaccatatt aggcagtacc ggcagcatag gcgaaagcac
     6001 gctggacgtt gtctcccgcc accccgaaaa attccgcgta ttcgcgctgg cagggcataa
     6061 gcaggtcgag aaattggcgg ctcaatgtca aacgttccgc cccgaatatg ccgtcgttgc
     6121 cgatgcggaa cacgccgctc ggcttgaagc cctgttgaaa cgcgacggca cggcgacgca
     6181 ggttttacac ggcgcgcagg cattggttga cgttgcgtct gccgacgaag tcagcggtgt
     6241 catgtgcgcc atcgtcgggg cagtggggct gccttccgcg ctcgcagcgg cgcaaaaagg
     6301 caaaaccatt tatctggcga acaaagagac gctggtggtt tccggcgcgt tgtttatgga
     6361 aaccgcccgt gcaaacggcg cggcagtgct gcccgtcgac agcgaacaca acgccgtttt
     6421 ccaagttttg ccgcgcgatt acgccggccg tctgaacgaa cacggcatcg cttcgattat
     6481 cctgaccgct tccggcggcc cgtttctgac cgccgattta aacacgttcg acagcattac
     6541 gcccgcccaa gcggtcaaac accccaattg gagcatgggg cgcaaaatct ccgtcgattc
     6601 cgccaccatg atgaacaaag gtttggagct gattgaagcg cattggctgt tcaactgtcc
     6661 gcctgacaag ctcgaagtcg tcatccatcc gcaatccgtg atacacagca tggtgcgcta
     6721 ccgcgacggc tccgtgttgg cacaactggg caatcccgat atgcgaacgc ccatcgccta
     6781 ttgtttgggc ttgcccgagc gcatcgattc gggtgtcggc gaccttgatt tcgacgcatt
     6841 gtccgcgctg accttccaaa agcccgactt tgaccgcttc ccctgcctga agctcgccta
     6901 tgaagccatg aacgcaggcg gagccgcgcc ctgcgtattg aacgccgcca acgaagccgc
     6961 cgtcgccgcc tttttggacg gacagattaa gtttaccgac attgccaaaa ccgtcgccca
     7021 ttgtctttca caagactttt cagacggcat aggcgacata ggggggctct tggcgcaaga
     7081 tgcccggaca cgcgcacaag cgcgggcatt tatcggcaca ctgcgctgat gccgtctgaa
     7141 caccgttatc aaaggaaaac catttgcaca cccttctagc ttttatcttc gccatcctga
     7201 ttttggtcag cctgcacgag ttcggacact acatcgttgc cagattgtgc ggcgtcaaag
     7261 tcgtacgctt ttccgtcggc ttcggcaaac cgtttttcac ccgaaagcgc ggcgacaccg
     7321 aatggtgcct cgccccgatt ccgttgggcg gttacgtcaa aatggtcgac acgcgcgaag
     7381 gcgaagtatc agaagccgat ttaccctacg cttttgacaa acaacacccc gccaaacgca
     7441 tcgccatcgt cgccgccggc ccgctgacca acctcgcact ggcggttttg ctgtacggac
     7501 tgagcttttc cttcggcgta accgaactgc gcccctacgt cggcacagtc gaacctgaca
     7561 ccattgccgc ccgcgccggc ttccaaagcg gcgacaaaat acaatccgtc aacggcacac
     7621 ccgttgcaga ttggggcagc gcgcaaaccg aaatcgtcct caacctcgaa gccggcaaag
     7681 tcgccgtcgg cgttcagacg gcatcgggcg cgcaaaccgt ccgcaccatc gatgccgcag
     7741 gcacgccgga agccggtaaa atcgcaaaaa accaaggcta catcggactg atgcccttta
     7801 aaatcacaac cgttgccggc ggcgtggaaa aaggcagccc cgccgaaaaa gcaggcctga
     7861 aaccgggcga caggctgact gccgccgacg gcaaacccat cgcctcatgg caggaatggg
     7921 caaacctgac ccgccaaagc cccggcaaaa aaatcaccct gaactacgaa cgcgccggac
     7981 aaacccatac cgccgacatc cgccccgata ctgtcgaaca gtccgaccac accctgatcg
     8041 ggcgcgtcgg cctccgtccg cagccggaca gggcgtggga cgcgcaaatc cgccgcagct
     8101 accgtccgtc tgttatccgc gcattcggca tgggctggga aaaaaccgtt tcccactcgt
     8161 ggacaaccct caaatttttc ggcaaactaa tcagcggcaa cgcctccgtc agccatattt
     8221 ccggtccgct gaccattgcc gatattgccg gacagtccgc cgaactcggc ttgcaaagtt
     8281 atttggaatt tttggcactg gtcagcatca gcctcggcgt gctgaacctg ctgcccgtcc
     8341 ccgttttgga cggcggccac ctcgtgtttt atactgccga atggatacgc ggcaaacctt
     8401 tgggcgaacg cgtccaaaac atcggtttgc gcttcgggct tgccctcatg atgctgatga
     8461 tggcggtcgc cttcttcaac gacgttaccc ggctgctcgg ttagatttta cgtttcggaa
     8521 tgccgtctga aaccgcattc cgcaccacaa ggaacttacg atgaaactga aacagattgc
     8581 ttccgcactg atgatgttgg gcatatcgcc tttggcattt gccgacttca ccatccaaga
     8641 catccgtgtc gaaggcttgc agcgtaccga gccgagcacc gtattcaact acctgcccgt
     8701 caaagtcggc gatacctaca acgacacaca cggcagtgcc atcatcaaaa gcctgtacgc
     8761 caccggtttc tttgacgacg tacgcgtcga aactgcggac gggcagctcc tgctgaccgt
     8821 tatcgaacgc cccaccatcg gctcgctcaa catcaccggc gcaaaaatgc tgcaaaacga
     8881 cgccattaag aaaaacctcg aatcgttcgg gctggcgcag tcgcaatact ttaatcaggc
     8941 gacactcaat caggcagtcg ccggcctgaa agaagaatac ctcgggcgcg gcaaactcaa
     9001 tatccaaatc acgcccaaag taaccaaact cgcccgcaac cgcgtcgaca tcgacatcac
     9061 gattgacgag ggcaaatccg ccaaaatcac cgacatcgaa tttgaaggca accaagtcta
     9121 ttccgaccgc aaactgatgc ggcagatgtc gctgaccgaa ggcggcattt ggacatggct
     9181 gacacgaagc aaccaattca acgagcagaa atttgcccaa gacatggaaa aagtaaccga
     9241 cttctaccag aacaacggct acttcgattt ccgtatcctc gataccgaca tccaaaccaa
     9301 cgaagacaaa accaagcaga ccatcaaaat caccgtccac gaaggcggac gtttccgttg
     9361 gggcaaagtc tccatcgaag gcgacaccaa cgaagtcccc aaagccgaac tggaaaaact
     9421 gctgaccatg aagcccggca aatggtacga acgccagcag atgaccgccg ttttgggtga
     9481 gattcagaac cgcatgggct cggcaggcta cgcatacagc gaaatcagcg tacagccgct
     9541 gccaaacgcc gaaaccaaaa ccgtcgattt cgtcctgcac atcgaaccgg gccggaaaat
     9601 ctacgtcaac gaaatccaca tcaccggcaa caacaaaacc cgcgacgaag tcgtgcgccg
     9661 cgaattgcgc caaatggaat ccgcgcctta cgacacctcc aagctgcaac gctccaaaga
     9721 gcgcgtcgag cttttgggct acttcgacaa cgtacagttt gatgccgtcc cgcttgccgg
     9781 cacacccgac aaagtcgatt tgaacatgag cctgaccgaa cgttccaccg gctcgctcga
     9841 cttaagcgcg ggctgggtac aggataccgg cctggtcatg tccgcaggcg tttcccaaga
     9901 caacctgttc ggtacgggca agtcggccgc cctgcgcgcc tcacgaagca aaaccacgct
     9961 caacggctcg ctgtcgttta ccgacccgta cttcacggca gacggggtca gcctgggcta
    10021 cgatgtttac ggaaaagcct tcgacccgcg caaagcatcg accagcatca aacaatataa
    10081 aaccaccacg gcaggcgcag gcatccgcat gagcgtgcct gttaccgaat acgaccgcgt
    10141 gaatttcggt ttggtggcag aacacctgac cgtcaacacc tacaacaaag cgcccaaaca
    10201 ctatgccgac tttatcaaga aatacggcaa aaccgacggc acagacggca gcttcaaagg
    10261 ctggctgtac aaaggtaccg tcggctgggg gcgcaacaaa accgacagcg cgttatggcc
    10321 gacgcgcggc tacctgacgg gcgtgaacgc cgaaatcgcc ctgcccggca gcaaactgca
    10381 atactactcc gccacccaca accaaacctg gttcttcccc ttaagcaaaa ccttcacgct
    10441 gatgctcggc ggcgaagtcg gcattgcggg cggctacggc agaaccaaag aaatcccctt
    10501 ctttgaaaac ttctacggcg gcggcctggg ttcggtgcgc ggatacgaaa gcggcacgct
    10561 cggtccgaaa gtgtatgacg aatacggcga aaaaatcagc tacggcggca acaaaaaagc
    10621 caacgtctcc gccgagctgc tcttcccgat gcctggcgcg aaagacgcgc gcaccgtccg
    10681 cctgagcctg tttgccgacg caggcagcgt gtgggacggc aaaacctacg acgacaacag
    10741 cagttccgcg accggcggca gggttcaaaa catttacggc gccggcaata cccataaatc
    10801 cacctttacc aacgaattgc gctattccgc cggcggcgcg gttacctggc tctcgccttt
    10861 aggcccgatg aaattcagct acgcctaccc gctgaagaaa aaaccggaag acgaaatcca
    10921 acgcttccaa ttccaactcg gcacgacgtt ctaatcccgc aaatgccgtc tgaagccctt
    10981 cagacggcat ttcgcggcaa cattcgaagg agttttacca tgacccgttt gacccgcgcg
    11041 tttgccgcgg ctctgatcgg tttgtgctgc accgcaggcg cgcacgccga caccttccaa
    11101 aaaatcggct ttatcaacac cgagcgcatc tacctcgaat ccaagcaggc gcgcaagatt
    11161 caaaaaacgc tggacagcga attttccgcc cgtcaggacg aattgcaaaa actgcaacgc
    11221 gaaggtctgg atttggaaag gcagcttgcc gaaggcaaac tcagaaacgc aaaaaaggcg
    11281 caagccgaag aaaaatggcg cgggctggtc gcagcgttcc gcaaaaaaca ggcgcagttt
    11341 gaagaagact acaacctccg ccgcaacgaa gagtttgcct ccctccagca aaacgccaac
    11401 cgcgtcatcg tcaaaatcgc caaacaggaa ggttacgatg tcattttgca gaacgtgatt
    11461 tacgtcaaca cccaatacga cgttaccgac agcgtcatta aagaaatgaa cgcccgctga
    11521 ccctttcaga cggcataccg aacaggaaaa ccatgattcc ggccacctac accctgtccc
    11581 aaatcaccgc gcggctcggc ggcgaatggc gcggcgagga catttccgtt accgccgtgc
    11641 gcccgctcgc agacgcgcag gcggaacaca tcagcttcct tgccaatccg aaatacaaag
    11701 ccgaagtcca cgacagcagc gcgggcgcgg tcatcgtttc cgccaaagcg gcagacggat
    11761 ttgaagggcg caacctgatt gtcgccgacg acccctatct ctatttcgcc aaagtcgccc
    11821 gcctgttttc acccgtcgtc aaagcgcgcg gcggcatcca tccgaccgcc gtcgtcgaac
    11881 cgagtgccac cgttcccgca agctgcgaaa tcggcgcgaa cgcctacatc ggcgcaaaca
    11941 ccgtgctcgg cgaaggctgc cgcatcttgg caaacgccgt cgtccaacac gattgcaaac
    12001 tgggcgacga agtcgtcctg catcccaacg ccgtcgttta ttacggctgc acactgggca
    12061 gacgcgtcga aatccacagc ggcgcggtca tcggcgcgga cggtttcgga ctcgcttttg
    12121 ccggcgattc atggtttaaa atcccgcaaa ccggcgcggt aacgctgggc gacgacgtag
    12181 aaatcggctc gaacaccaac atcgaccgcg gcgcgatgag cgacaccacc gtcggcaacg
    12241 gcaccaaaat cgacaaccaa gtccaaatcg gacacaactg caaaatcggt tcgcacaccg
    12301 tcatcgccgc caaaaccggc atctcaggca gcgtaaccat aggcagctac tgcatcatcg
    12361 gcggcggcgt cggtacggtc ggacacatcg aaatcgccga caaaaccacc atcggcggcg
    12421 gcacgtccgt cacccacagc attaccgaaa gcggcaaaca cctcgccggc atcttcccga
    12481 tgtccaccca taaagaatgg gcgcgcaacg ctgtttacat ccaccgctta agcgaaatga
    12541 acaaacggct caaaacactg gagcagcagc tttcagatgc cggtcaagac agcaaataac
    12601 caaaccgact ttattcaagg aatacgacag acatggacgt acaactcccc atcgaagcca
    12661 aagacatcca aaaactcatc ccccaccgct atccgtttct ccagctcgac cgcatcaccg
    12721 ccttcgagcc gatgaaaacc ctgaccgcga ttaaaaacgt cagcataaac gagccccagt
    12781 tccaaggcca ctttcccgac ctgcccgtga tgcccggcgt actcatcatc gaagcgatgg
    12841 cgcaagcctg cggcacgttg gcgattttga gcgaaggcgg gcgcaaagaa aacgaattct
    12901 tcttcttcgc cggcatagac gaagcccgtt tcaaacgcca agtcatcccc ggcgaccaac
    12961 tcgtctttga agtcgagctg ctgaccagcc ggcgcggcat cggcaaattc aacgccgttg
    13021 ccaaagtgga cgggcaagtc gccgtcgaag ccatcatcat gtgtgccaaa cgcgtggttt
    13081 gagcgttcgg aaaaaggtcg tctgaaagtt tcagacgacc taataaaaag aaaacccacc
    13141 ggtttaggtt tattcaaacc cagggacacg gtggggatta gttttaccta actgtatcaa
    13201 atatagtttg aaacgtcaat ttaaaaataa agaatcaggt gttagcgtgg attataagga
    13261 atgctgtagt attttttctg atttcagaat ggaacggtat aaaaatgccg ttggggaaga
    13321 caaagcagct gaattgtatt tattgaattt atctttatca agagaacttt ttcatgttgt
    13381 ttcaatattt gagattgttt taagaaacaa aattgacatt tgccttcagc aggcgtttaa
    13441 agacagaaac tggttatata acagcataca gccacagacg aatcccgcat taaaatatca
    13501 aggttgcttt ttaagaaatg gcacgaaaga atctgctgaa ttaatcaagg ttgcattatc
    13561 taaaatacaa aataatagcg ggggaaagtt tgaccacaac caattggttg caggactagg
    13621 attcggtttt tggcggtatc tgtttgcagg agggaaagat gcccaatttg atgctacagg
    13681 gaaagtattg atgaaagttt ttccaaaaaa gcccaaatct acaccaagtg tgcaatataa
    13741 ccaaaaatgg atttttcgag aactttccaa tattaacaaa ttccgtaatc gtttggcaca
    13801 tcacgagccg atttgtttta aaggtgcaat aaaagatacc aactacgcta gaaatattca
    13861 ccaatctatt tttgaactgc ttaattacat ggatgtagat actgcttcag tatttagcca
    13921 ttttagcgat caagtgattg cggtctgcga tgaaatcgac aaactgtaat tttctattat
    13981 ttgtcttaac aagcagcgga gtattcaaaa catgaccctc atccacccga ccgccgtcat
    14041 cgaccccaaa gccgaactcg actccagcgt caaagtcggc gcgtacaccg tcatcggccc
    14101 caacgtccaa atcggcgcga ataccgaaat cggcccgcac gccgtcatca acggccacac
    14161 cagcatcggc gaaaacaacc gcattttcca atttgccagc ctcggcgaaa tcccgcagga
    14221 caaaaaatac cgcgacgagc cgaccaagct gattatcggc aacggcaaca ccatccgcga
    14281 attcaccacc tttaatttag gcacggtaac cggcatcggc gaaacccgta tcggcgacga
    14341 caactggatt atggcgtact gccacctcgc gcacgactgc gtggtcggca accacaccat
    14401 cttcgccaac aacgcctcgc ttgccggaca cgttaccatc ggcgactacg tcgttttggg
    14461 cggctacacg ctggttttcc aattctgccg catcggcgac tacgccatga ccgcgtttgc
    14521 cgcaggcgta cacaaagacg tgccgcccta ctttatggca tcgggctacc gcgccgaacc
    14581 ggcggggctc aacagcgaag gcatgcgccg caacggtttt accgcagagc agatttccgc
    14641 cgtcaaagac gtgtacaaaa ccctctacca tcgcggcatt ccgtttgaag aagccaaggc
    14701 agacattctc cgccacgccg aaacccaagc cgagcttgcc gtattccgag actttttcgc
    14761 acaatcggca cgcggcatca tccgctgacc gtaccctttt gatgccgtct gaaaccccga
    14821 cagcgtttca gacggcatcg gtttttttaa agcggtatat tgtttgatcg atgcatcatt
    14881 ttgtagattt cagaagtatg gcagtcggca gcattgatga tttctgccgc ccgccacatc
    14941 cccattcgga catttcattg tgacctccgc cgctgctttt aaagaattgc aaacaatttc
    15001 cgcagcttga accggcctgt tttcggcgaa aaaaaccaaa agtatttttc aaaagaacat
    15061 attgtcttat tggatattct gtgctgaaat tactggacac tacaaaagtg gtgttttaaa
    15121 aataaaacag acaaaggaga aagccatgca agtgttttta gacaatccca aagccttttt
    15181 tgaaaccgtc agcggctggg tttggggacc tgttatgttg atgctgctgg tcggcacggg
    15241 tattttgctg actgttttat taaaaggttt gcagttcacg atgttgggtt atgcgctgaa
    15301 acaggcgttt gtgccgccaa agaagcataa aagcggcgaa ggccacgaag gcgatatttc
    15361 ccatttcgcg gcgttgatga ccgcgctgtc cgccaccatc ggtacgggta acatcgccgg
    15421 cgtggcgact gcggtggtaa ccggcggccc gggcgcggta ttttggatgt ggatgaccgc
    15481 cattttcggc atggccacca aatacggcga aggcgtgttg gcggtgaaat accgcgtcaa
    15541 caattccaaa ggcgaaatgt ccggcggccc gatgtattac atcgaaaaag gcttgggcaa
    15601 aaactggaaa tggatggcgt tggcgttcgc tttattcggc acattcgctt ccttcggtat
    15661 cggcagctcg gtgcagtcca actcggttgc acaggcggtg caaaccagct tcggtatcga
    15721 acctgcctat accggcatta cgttgaccgt tctgactgcc gttgtcgttt taggtggtat
    15781 taaaggcatc gccaaagccg cttctttcat cgtgcctgct atggcggtgt tttatgtgtt
    15841 gggcggtctt tccattatcg cgattaattc cgatgcactg atgcctgccg tcaagctaat
    15901 tttctccgat gcgttcagcg cgcaggcagt ggcgggcggc gctatcggta cggtcatccg
    15961 ctacggcgtg gcgcgcggcg tgttctccaa tgaggcgggt atgggttctg cgcctattgc
    16021 cgccgcagcc gcgaaaaccg accatcccgt ccgtcaggcc ttggtttcta tgaccggtac
    16081 gtttttggat accatcgtcg tttgctcgat taccggcatc gtgttggtaa tgggactgct
    16141 cggcgcgggc ggcgagtttg tcaaacctga agtgagcggc gcggcactga caaccgtcac
    16201 attccaaaaa atgctgcccg gcatcggcgg ctggattgtt accatcggcc tgattttctt
    16261 tgcctactca accattttgg gctggtgcta ttacggcgaa aaatgcgcgg tgtatgtttt
    16321 cggcgagaaa tttgccggtt tgtaccgcgt gggttatgtt tcttccgtta tgctgggtac
    16381 cgtgttgagc cttgatttgg tgtggctggc ttcggacaca ttcaacggct tgatggcatt
    16441 gcccaacctg attgcacttt tattgatggc gaaagtcatc gtcaatgaaa cgcgcgactt
    16501 caaacaaaaa atcacaaacg gcgaattgcc gcattaatat ccgaggccgt ctgaatccga
    16561 atattcagac ggcacggcat attaaaaaaa gtcggaggga gaaacatgaa agtgcttgtt
    16621 ttaggtgcgg gtgttgccgg cgtgtcttcc gcgtggtatc tggcagaggc cggacatgaa
    16681 gtaacggtca tcgaccgcgc caagggtgtg gcgatggaaa ccagttttgc caatgcaggc
    16741 cagctttctt acggctatac cacgccttgg gctgcacccg gtattccgac caaagcactg
    16801 aaatggctgt ttaaaagcca tccgcctttg ctgtttcgcc ccgacggcag cctgtatcaa
    16861 atcgaatggc tgtggcggat gctgcaaaac tgcacggcag cgcactatca aaccaataaa
    16921 gagcgcatgg tcaggatttc cgaatatagc cgtgaaatgt tccgccgttt tgaagcgcaa
    16981 accggcatga attttgagga acgcaaaaaa gggacgttgc agattttccg ccaaaccaaa
    17041 gaagtcgaag cggcagaaca agacattgcc gttttggaac gctacggcgt gccgtaccgc
    17101 cgtctgaaac ccgaagaatg tgcagaattt gagcctgcgc tggcacgcgt taccgccaaa
    17161 attgccggcg gcctgcacct gcctgcagat gcgaccggcg actgccacct cttcactgaa
    17221 aacctataca aattgtgtca ggaaaagggc gtacagtttc atttcaacca aaccatcagc
    17281 cgcatcgacc ataacgggct gcgcatcaaa gccgttgaaa ccgaaacagg gcggtttgaa
    17341 gcagatgccg ttgtctgtgc gctcggctgc ttcagtagga ctgtgttggc gcagttagac
    17401 ctcgatctgc cgatttatcc cgtcaaaggc tattccttga ccctgccggt caccaattca
    17461 gacggcgcgc cggtgtccac cgttttggat gaaagctaca aagtcgccat cacgcgcttt
    17521 gacaacagaa tccgcgtcgg cggcatggca gaattgtcgg gctacgaaat caaactgccc
    17581 gaaaaacgcc gcgaaacctt ggctttggtc gtcaacgatt tgttcccgga aggcggcgat
    17641 ttgagccaag cattgttctg gagcggcctc agaccgatga cgcccgacag cacgccgtta
    17701 atcggccgca cccgctttga aaacttattc ttgaatacag gccacggcac tttgggctgg
    17761 accatgtcgc tgggttcggc aaaattaacc gccgatatcg tgagcggcaa agacaccgaa
    17821 atccgaagcg acgatttgag cctgtcgcgc tatcaggctt aagctggaaa gcgataaggt
    17881 ttagcgacat ttcaaattta aaggccgtct gaaaatcatt tttcagacgg ccttttgttt
    17941 caaaattcgg gtatccaatc aataaaataa ataataacta ttatcatacg cattaaaaag
    18001 tgttagtctg aacctgtccc agcttttagc gcaggttttc ccatgcccga tttttcgatg
    18061 tccaatttgg ccgttgcctt ttccattacg ttggctgccg gtttgtttac cgtattaggc
    18121 agcggcttgg tgatgttttc caaaacgccc aatccgcgcg tgttgtcgtt tggtttggca
    18181 tttgccggcg gtgcgatggt gtatgtttcc ctgacggaga ttttcagtaa gtccagcgag
    18241 gcgttcgctg aaatttatga taaagaccac gcgtttgcgg cggcgaccat ggcatttttg
    18301 gcagggatgg gcggcattgc gctgattgac cgtctggtgc cgaacccgca tgaaacttta
    18361 gacgcgcaag acccgtcgtt tcaagaaagc aaacgccgcc atatcgcgcg agtcggcatg
    18421 atggcggcgt ttgcgattac tgcgcacaat ttccccgaag gcttggcgac gttttttgcc
    18481 acattggaaa atccagcagt cgggatgcct ttggccttgg cgattgccat ccataatatt
    18541 ccggagggca tttccatcgc cgcgccggtt tattttgcca cccgcagccg taagaaaacg
    18601 gtgtgggcgt gtctgctatc cggcttggcc gagccgttgg gggcggcttt gggctatttg
    18661 gttttgcagc cgtttttgtc gcctgccgtg tttggttcgg tattcggcgt gatagccggt
    18721 gtgatggtgt ttttggcgtt ggacgagctg ctgccggctg ccaaacgcta ttcagacggc
    18781 catgaaaccg tttacggcct gacaatgggc atggcggtga ttgccgtcag cctggtattg
    18841 ttccattttt aaaacctgta tgccaaaggc cgtctgaaat gattcagacg gcctttttgc
    18901 gttataatcc gcacatcaaa aataacctta atttcacaaa gttccatcat gttagacaaa
    18961 tactcccccg ccgaaatcga atccaaacat tatcaaaact gggaagagca gggctatttc
    19021 caacctgata tggatttgac caaaccgtct ttttccatcc aactgccgcc gcccaatgta
    19081 accggcacgc tgcacatggg tcatgccttc aaccaaacca ttatggacgg cctgacccgc
    19141 tactaccgta tgaaaggctg caacaccgcc tggattcccg gcaccgacca cgcgggcatc
    19201 gccacgcaaa tcgtggtcga gcgtcagctt gccgcgcaaa acgtgtcccg tcatgacttg
    19261 ggtcgtgaaa aattcttgga aaaagtgtgg gaatggaaag aagtttccgg cggcacgatt
    19321 acgcagcaga tgcgccgtgt gggctgttct gccgactgga cgcgcgagta tttcacaatg
    19381 gacgatgtac gcgccgaaac cgtaaccgaa gtgttcgtac gcctgtatga acagggcttg
    19441 atttatcgcg gcaaacgctt ggtgaactgg gatccggtat tgggtaccgc agtgtctgat
    19501 ttggaagtgg aaagcgtgga agaacaaggc tctatgtggc acatccgcta tccgctggcg
    19561 gacaatcctg ccgaagccgt catcgtcgcc accacccgtc ccgaaacgct gttgggcgac
    19621 gttgccgttg ccatcaatcc cgaagacgaa cgttataccc acttaatcgg caaagaatta
    19681 atcctgccgc tgaccggccg caccattccc gtgattgccg acgaatacgt tgaaaaagac
    19741 ttcggcaccg gctgcgtgaa aatcacgcct gcgcacgact tcaacgacta cgaagtcggc
    19801 aaacgccacg atacgcgctt ggttaatgtg ttcgacttgg aagccaaagt attggcaaac
    19861 gccgaagtgt tcaacttcaa aggcgaagcg caaccaagct ttgccctgcc tgaaaaatac
    19921 gcaggcttgg accgctttgc cgcgcgcaaa caaatggttg ccgatttgca ggaacaaggt
    19981 ttcttggtcg aaatcaaagc gcacacgctg atgacgccga aaggcgaccg taccggttcc
    20041 gtgattgagc cgatgctgac cagccaatgg tttgtcgcca tgtccgccac gccaaacggc
    20101 ggcgagcctg acagcgaatt caaaggctta agccttgctg acaaagccaa aaaagccgtc
    20161 gacagcggcg cggtgcgctt tatccccgaa aactgggtca acacctacaa ccaatggatg
    20221 aacaacatcc aagactggtg catctcgcgc caactgtggt gggggcatca aatccctgca
    20281 tggtacgaca acgaaggcaa tgtgtacgtt gcccgcaatc aggaagaagc cgaaaaacaa
    20341 gccggcaaaa caggcttgac ccgagaagaa gacgtattgg acacatggtt ctcctccgca
    20401 ctcgtgccgt tctccacgct cggctggccg tctgaaaccg acgaactcaa agccttcctg
    20461 ccgtccaacg tcttggttac cggctacgaa atcatcttct tctgggtggc gcgcatgatt
    20521 atgatgacca cccactttac cggcaaagta ccgtttaaag acgtgtacat ccacggcatc
    20581 gtgcgcgacc acgaaggcaa aaaaatgtcc aaatccgaag gcaacgtcat tgaccctgtg
    20641 gatttgatcg acggcatcga cttggaaaaa ctgctggtga aacgtaccac cggtctgcgc
    20701 aaacccgaaa ccgcgccgaa agtggaagaa gcctcgagaa aactcttccc cgaaggcatt
    20761 ccgagtatgg gcgcggacgc tttgcgcttc accatggcga gctacgccag cttggggcgc
    20821 agcgtgaact tcgacttcaa acgcgccgaa ggctaccgca acttctgcaa caaaatctgg
    20881 aacgccacca acttcgtctt gatgaacacc gaaaaccaag actgcggcta cggcgcaacc
    20941 gccactgagc cgcgcggcta ttccttcccc gatatgtgga ttgtagaccg tctgaatcag
    21001 accatcgagc aagtaacgca agcctacgaa acctaccgct ttgatttggc agcggaaacc
    21061 ctgtacagct tcatgtggaa cgactattgc gactggtatt tggaacttgc caaagtgcag
    21121 cttcaaaccg gctgcgccag ccgccaacgc gccacacgcc ataccttgtt gcgcgtactc
    21181 gaagccgccc tgcgcctgct gcacccgatt atcccgttca tcaccgaaga attgtggcaa
    21241 accgtcgctc ctatgtgcga cgcgaaaacc gccgacagca tcatgctcgc ccgcttcccc
    21301 gaagccgacg gcggcgatat tgttcagacg gcattcgagc aaatgaccgt gttgcaggat
    21361 ttgattggcg cagtccgcaa cctgcgcggc gaaatgggca tccagcccaa tgtgaaagcc
    21421 ccgctgtttg tcgaaagcac ggacgacttg gcggactacc tcaaatacct gccgatgatg
    21481 acccgcctga tcgaagcaca gcaagtcgcc gccctacccg aaagcgaaga cgcgcccgtc
    21541 gccgtctgca acggcgcgcg cctgatgttg aaagtcgaaa tcgacaaagc tgcggaaacc
    21601 gcccgtttga gcaaagaagc cgagaagctg caaaaagcct tggacaaact caacgccaaa
    21661 ctctccaaac ccggctacac cgaaaaagcc cctgcgcatc tggtggaaaa agacaaagcc
    21721 gatttggcgg aattggaaga caaaatggca aaagttcaaa atcagttggc gaagttgaaa
    21781 gactgatttg attgaataaa caaggccgtc tgaaaaatgt ttttcagacg gcctctttta
    21841 tagtggatta acaaaaatca ggacaaggcg acgaagccgc agacagtata aatagtacgg
    21901 caaggcgagg caacgccgta ctggtttttg ttaatccact atacatggca ttgtatcggc
    21961 actgatgaaa acattcacag tgatgcaaaa gtcgaatatc ttcaggacgg cagtttccgt
    22021 ggcgatgcta tactcaaaat cgatgatgac ggcaatatct tggcataccg tgttgtcggc
    22081 tcagggaaat ggcgttttga aaacaatgcc tgcgcctagt cgcggataaa acttaccccg
    22141 tgaagctgcg actgcataat cgccgccttc atcgccgaca acgccttcgg acggacaaaa
    22201 ttgcggcggt acgccaatac gacccgtcgg cttggcggcg taccctcaaa cggaataatg
    22261 ctgaacagca tatgatcgtt ctcggtcagt gcggttgccg gcaacacgct gattgccaaa
    22321 ccgctggcga ccatatggcg gattgtattg atcgagctgc cctgcaatgt attggtcaac
    22381 ccctgtatgc gttgtttcgc cgccaattcg gaacagcttg agagtacctg atcccgcata
    22441 cagttgcctt ccgtcagcag caaaacctgc tcctcaccca gcatccgggg cgaaacggca
    22501 tccagttcct caaatgaatg ccctttcggg acaatcacga aaaacggttc gtcatacaag
    22561 ggttcggtaa caatgcccgg ctcttgaaac ggttcggcaa cgataatcgc atcaacgtcc
    22621 ccgcgtttga gcgactcggt caaagtatgc gtgtaattct cttccaacat caaaggcatt
    22681 ttcggtgcag tacggcgcaa cgagacaatc agtttcggca gcaggtacgg cgcaaccgta
    22741 aaaatcagcc cgagtttgaa cgcaccctcc agctcgtttt gttcttcatt tgccaaatgc
    22801 ctgataagct ctgcctcttc caacacctta cgcgcctgtg caacgatacg ttcccccgcc
    22861 tcggtcgtaa taatatcgtt gctgctccgg tcaaacaaag agacggcaag ctcttcttcc
    22921 aatttcttaa tggcaataga caaagtgggc tgactgacaa aacaacgccg cgccgccctg
    22981 ccgaaatgac gttcttgggc gactgcgacg atgtaccgca attcggttaa ggtcatgtcc
    23041 tatacctttt tctgttccgg caaagtaatg ttcaactcaa gcacatccat accatcctgt
    23101 ttttcctggg aaatacggat attgtctaat gaaacattca catatttgga caggacttcc
    23161 atcaactctt tacgtaaagt cggcaggtaa tccggagcct gaccttcttg ggcgcgctct
    23221 tgggcaatga tgatttgaag gcggtcgcgg gcaacggttg ccgttttctg ctttctgccg
    23281 aataaaaatt cgattaatga catatcttat cctccaaaca gacgtttgaa gaagcttttt
    23341 ttctcagctt ccaagaaacg catttcacgg ttctcgccca aaagacgggc aataacgtcc
    23401 ttatatgcct cggaagccgc cacgctgtcc tgatggatga ccggttctcc ggaattggat
    23461 gcctgcaaga cgttttggga ttcaggaatc acacccagca aaggaatatg cagaatatcg
    23521 caaatatcct gtacagacag catttcgcct tttgccacac gttcgggaga ataacgcgta
    23581 atcaacagat gttctttaac cgaaccgcct tgctctgcct tatgggattt gctttgcaaa
    23641 attcccaaaa tcctgtcgga gtcacgcaca ctggaaacct caggattggt cgttacaatg
    23701 gcttcatcag caaaatacaa cgccatcaat gcaccctgct caataccggc aggagagtcg
    23761 caaataatat actcaaagcc cattttcttg ccggacagct cctgcatcac tttttctacg
    23821 ccctcgcgtg tcaaagcgtc tttatcccga gtctgggaag ccggcaaaat aaacaggttt
    23881 tcacaatttt tatctttaat caaagcttgg ttgagcgtcg cctccccctg aatgacattg
    23941 atcaggtcat aaacgacacg acgctcgcaa cccataatga ggtcgaggtt acgcaaaccc
    24001 acatcaaaat caattaccgc agttttatat ccgcgtaatg ccaaacctgt cgcaatactg
    24061 gcactggtag tcgttttacc gacaccgccc ttacctgaag ttactacaat aatttttgcc
    24121 acaatatttc ctttttaaat atcaaacaat tactctgagc caattgcact gataaccaat
    24181 cggttatcct gcaacaatat ctgtaccggc tgcttgtgca gatggttcgg caaatcctgt
    24241 tcaaaattac ggtaaatacc cgccacagaa accagttctg cctgcatgga gtggataaat
    24301 atgcgggcag aagtatcacc cttggcaccg gccaaagcac gccccctcat cggcgcataa
    24361 atatgtatat tgccatccgc aatcaattcc gccccctggc tgaccgcccc cgtaacaatc
    24421 aaatcgccat cttcggcata aacctgctga ccggtacgga caggggatgt aatcaatact
    24481 gttttccttg ctttctgacc atcctccgtg ttctgcacct caacctgacc cagttcttta
    24541 acattttccg aatgagacag acaaaacagc aaatgatact tcatagccgc agcagcccaa
    24601 cgttcattag aatgcttcag acccaaaatt tgcataccat gccttgaaaa caacgaaacc
    24661 aatgcagcaa gatccaaaga ctcgggataa tcaaactctt gaacatccag cacaaatgga
    24721 acaacaccag actcttgaaa cttcttgccc aatttgacca gcacatcttc caaatcaaac
    24781 aagtctgacg tatgcaaaga tatagacaat acgtccatct ttgtcgactt tatatcgaaa
    24841 gcattcatta tataaaccat catagaattt tttaatgatg taagtttacc gcgcaaacct
    24901 tagctattca attaatattt taaacatgat agccaatacc ctattaccta tcagatattg
    24961 caaaaataac gccacctgct tttcggcaga tggcgttata tgactaaaat tactcagcag
    25021 ccggtttgtc aaccaattca accagtgcca gaggtgcatt atcaccttta cggaatccgt
    25081 atttcaacac ccgaacataa ccaccgttac gagcagtaaa acgaggaccc aaatcgccaa
    25141 acagttttac tacaacatca cggtcgcgag tacggtcaaa tgccaaacgg cggtttgcca
    25201 atgacggctt tttacccaat gtaatcaacg gctctactac acggcgcaat tccttggcct
    25261 taggcagagt tgttacaata gtttcgtgag tcaataatga attcgccata ttacgcagca
    25321 ttgcagcacg atgactgctg gtacggttta atttgcgatt gccattacga tgacgcatat
    25381 caattatcct ttaattcttc attaaggctt ttccaagcct acaggtggcc atgcttccaa
    25441 cttagaaccc agtgtcaaac ctttagatgc caatacttcc ttaatctcat tcaaagattt
    25501 acgtcccaaa ttcggcgttt taagaagctc ggtttcagtg cgttgaatca aatcgccaat
    25561 ataataaata tcctcagctt tcaaacaatt agctgaacgt actgtcaatt ccagatcatc
    25621 caccggacgc aaaagaacag ggtcgatagg aggtgctttt tcttcaacct cctccacagg
    25681 cgtaccctgc aaatcagcaa aaatagacat ctgatcaatc aaaatacgtg ccgcactgcg
    25741 tacagcttcc tcaggatcaa tagaaccgtc ggtttcgata tccaaaacca acttatcaag
    25801 atccgtccgc tgctctacac gtgcaggttc aacctcaaag ctaacacggc tgatgggcga
    25861 aaagctcgca tccaactgga ttgcaccaat ctgacggttc tcatcacgaa ctacctgacg
    25921 acctgaaaca gattgataac cacgaccttg ctctacttta atttccatct caatttgacc
    25981 gttatcagcc aaatgacaaa tgacatgacc aggattcaga atttctacat catgcggcaa
    26041 ctcaatatca ccggcagata cgacacctga acctgatttc ttcaacacaa gttgaacttg
    26101 gctacgacca tggagtttaa acacaatacc tttaatattc agcaaaatgt caacaacatc
    26161 ttcctgaata ccatcaacag tagaatattc gtgtaataca ccggcaatag ctacttcagt
    26221 aggagcaaaa ccattcatgg atgacagtaa gatacggcgc aaagcattac ctaaggtatg
    26281 accgaaacca cgttcaaatg gctgcataga tacttttgca cgagttgcag aaaaagtatt
    26341 tacatcaatt tgacgaggtt tcaaaaattc ggttgtgcta ttctgcattt aactgtccct
    26401 cactgagcta gcattattta gagtagaact ctaccaccag ctgttcatta atatcaccgg
    26461 tcaattccga gcgatccggc atgtttttga acacaccctc aagtttatcc gcatctacag
    26521 aaacccaacc cggcaagccg atttgagttg ccaaacccaa tgcttcttga atacgtacct
    26581 gttttttggc tttttcacga actgagacaa catcaccagc tttcacttgg aaagaaggaa
    26641 tattgacaac ttgtccattc acaactatcg ccttatgaga aacaagctgt cttgcttcag
    26701 ctcgggtaga accgaaaccc atacgataaa cgacattatc caaacgagat tccagcaact
    26761 gcaacagcaa ctcgccggta gaacctttac gacgatcagc ttctgcgaaa taacgacgga
    26821 actgacgttc taatacgcca taaatacggc ggattttttg tttttcacgc aactgcaaac
    26881 catagtctga caaacgcggt ttttttgcac catgctgacc aggagcggaa tcaattttac
    26941 atttagaatc caaagagcgg cgcgcactct tcaaaaacaa atccgtacct tcgcgacgtg
    27001 ccaacttaca tttagggcca atataacgtg ccatgtttca aatcactcca atattaaata
    27061 cgacgttttt taggcggacg gcaaccgtta tgaggcaacg gggtaacgtc agtaatgctg
    27121 gtaatcttga aaccaagagc attcaaagca cgtacagagg attcgcgacc tggacctgga
    27181 cctttaatac gaacctctaa atttttaacg ccatactctt gggcaacttt accagctgct
    27241 tctgctgcaa cttgtgctgc aaatggtgta cttttacgag aacctttaaa accagcgccg
    27301 ccagaggtag cccaagacaa cgcattgcct tgacggtcag tgattgtaat gatggtattg
    27361 ttgaaagatg catgaacgtg cacaataccc tcactcacgg ttttacgtac ttttttacgt
    27421 acacgtgaag ctgtgtttgc tttagccatt aataaaattc cttaaaattt atttcttacc
    27481 agcaatcgct ttacgcggac ctttgcgggt acgcgcattt gtacgagtgc gttgaccgcg
    27541 gcatggtaag ccgcgacgat gacggaagcc acgatagcag cccatgtcca tcaatcgctt
    27601 gatactcata gttacctcac gacgcaaatc accttctact tcatacttgg caacttggtc
    27661 acgcaaagca tctaattgag tctcgtccaa atcttttgct ttagtatcag gcgcaatatt
    27721 tgcagcctca caaatcaatt tagcacgagt agcaccaata ccgtaaatag cctgaagacc
    27781 aattacgatg tgtgcgttat tagggatatt tacccctgca atacgagcca tattttttcc
    27841 tttttagggc aaagtgtgtc actatatcac agaatcacat taaaagaaat attccattaa
    27901 ccttgacgct gtttgtgacg gagatcagta caaattacac gaactacacg atttcgacga
    27961 ataatcttgc aatttcggca aattttctta acagatggtt gtacacgcat tttattttcc
    28021 ttttattggt ttatcttgct ctgaaaacga ttcgagccct agttagatca taaggtgtca
    28081 gctctactgt gaccttatct cccggagaaa tacgaatgta atgcatccgc atcttcccag
    28141 aaatatgacc caatacaata tggtcattct caagttttac tttaaatgtt gcattaggta
    28201 aagtttcaag aatttcacct tgcatttgga tagtatcttc tttcgccata attctatttc
    28261 cgagaaaatg atttcatttc tgaacgagtc attaacttat catactgttg agtaagccta
    28321 tacgaattta tttgtgtact aaaatccatc gttacaacaa ctagaatcaa caaagacgtg
    28381 ccacccaaat aaaaaggtac atttaaaacc gtagttaaga actctggaat taaacaaata
    28441 gttgtaatat aaagagctcc aaacaatgtc aaacgtaata caactttttc taaataccta
    28501 gaggtctgct caccaggtct aatcccagga acaaaagcac cactcttttt taaattctct
    28561 gccatttctt tagggctaaa aaccaaagcc gtataaaaat aacaaaagaa aataactgtc
    28621 gctgcaaata aagccatata cagcaattga ccgtgttgta acaatccagc tattttgtgc
    28681 aaaacactat ttgtatcagc cgaaccaaac caacctaaaa gagtagatgg aaatagaata
    28741 atactggaag caaaaattgg gggaataaca ccagccatat tcaacttgaa aggcatatgc
    28801 gtattttgac tacccgccct accattaaac tggcgttttg cataatgaat aggaatcttc
    28861 cgctgtgcac tttcaaagta tacaaccaaa taaattaata ataaggcacc aaatacaata
    28921 aacaacgccg taagcatgct catagaacct tggttcgtca gtgtaaccag ctttgcaata
    28981 cccgaaggaa tacctgaagc aatacctgcc gtaatgatta aagaaatacc gttcccgata
    29041 cccctttcag taatttgctc cccaagccac ataagaaaca tggttcccgt taccaaagaa
    29101 actaccgtgg aaacatgaaa ctcaaatgaa cttgttacaa caattccttg ctgaaatacg
    29161 aaagatgcaa cacctagact ttgaagaatt gctaacaaaa cagtaccata cctagtatat
    29221 ttcgtaatta cctttctacc agcctcccct tcttttttta aagccttcaa tgatggcaaa
    29281 atttcagaag cgagctgtac aataatagaa gctgaaatat atggcataat tcctattgca
    29341 aatatactaa agcgctctaa cgacccaccg gaaaacatat tcaatattcc caggatgccg
    29401 tttccagcgc tttcgtataa tttagctaaa gcaacagcat caactccagg tacgggtata
    29461 tgggcaccaa ttcgaaaaac aatcaatgct ccaaatagaa acaaaagacg tttcttaaga
    29521 tctccaaatt tggatgaacc tgatgacgtt tgttgattag ccacaatatt aaaccttaca
    29581 tttcaatctt accaccaaca gcctcgatag cagctctcgc acctttggta actttaatac
    29641 ccttcaaagc aactgcctta gaaatttcac cagaagcaat aactttaaca ttagagactg
    29701 tagatgcaat cagacccgct tgctttaaga ccaaaatatc aatctcatta acagcaattg
    29761 attccagttc acttaaacga agctgtgcat tagctgatgc tgttaaagat ttaaaacctc
    29821 ttttagggag gcgtcgttgc aagggcattt gaccaccctc gaaacccacc ttatgaaacc
    29881 caccagaccg actcttttga cctttatgac cacgaccacc cgttttgcca agaccactac
    29941 caataccgcg tccaacacga cgaccagcat gcgtagcacc aacagcaggt tgaattgtat
    30001 tcaaaaacat atcaagactc cactttcaac aagtagctga ttttattaat cataccacgg
    30061 ttttcagggg tatctaaaac ctctaccgta tgctcgcgac gacgcaaacc taaaccgcgt
    30121 gcacatgcac gatgagattc aattgtacca atcaggcttt taaccaatgt aaccctaatc
    30181 tttttttgtt cagccatggt taactcccaa aatgtcttcc actgtcaagc cacgtttggc
    30241 tgcgatatca gcaggagtat gcaacttaga caaaccatct aatgttgcac gtacgatatt
    30301 atatgggtta gtagatccgt gcactttggc ggagatatta tgaatgccca tagcatcaaa
    30361 aaccaaacgc ataggtccac cggcttttac gccactaccc tctttagcag gctgcataaa
    30421 tactttagta gcaccatgtc gaccaataac ctcatgatga atcgtaccat tttttaatgg
    30481 taccttaatc atagagcgtc gtgcttgatc catcgccttt tggactgcaa caggcacttc
    30541 ttttgactta cctttaccca taccaatacg accatctcca tcaccaacaa cagttagcgc
    30601 agagaaagcc ataatgcgac cacctttaac tactttggtt acacggttaa ctgcgaccat
    30661 cttttcaatc agaccgtcac cgcgttcttc aatttcatgt tttgccatct gaaagtctcc
    30721 aaatatttag aagcttaaac cattttcacg agcagcttca gccaaagcct tcacacgacc
    30781 gtgatattgg aaacctgaac gatcaaaagc aaccttttct acacctgctg ctttagcctt
    30841 ctcagcgata cgtttaccaa ctattgcagc tgcttcaaca ttgcttccag atttcagact
    30901 accgcgcacc tcagcttcca atgtagaggc ttgagccaat actttatcac cttcagcact
    30961 aattacttga gcataaatat gattattgct tcggaacaca cataatctta ccattttcaa
    31021 gtccgcaata cgagcacggg ttttgcgtgc acgacggagt cgggttgtat gtttatccat
    31081 tagtgaacct caattatttt ttcttggctt ctttcattac cactacttct cctacatagc
    31141 gaacaccttt acctttataa ggctcaggag cacggaacgc acgaatctca gcagcaactt
    31201 gaccaacaac ttgtttatcc gagccggtta aaacaatctc tgtttggcta ggagtttgaa
    31261 cggagacacc ttcaggcatt tcatatacga tcggatgaga aaaacccaaa gacagattca
    31321 agattttacc ttgtgcttga gcacgataac ccacacctat caattgcaat cttttctcaa
    31381 aaccttctga aacaccttta accatattgc tgactaatgc gcgagcagta ccagacattg
    31441 catttgcttg tttactgctg ttattcgcaa caaaagccaa tttgccatca ttaaattcaa
    31501 tggctacatc agaatgcaaa ggaaaagaca attcaccgtt cttaccctta ataactaatg
    31561 cctctgttcc aaattttact tctacaccag cgggaacagt cactgggttt tttgcgacac
    31621 gtgacatttc ttttcctcca ctaggctaca atgcataaca actcaccacc aacaccttga
    31681 gaacgtgctt tacgatcagt cattacacct ttagaagtac taacaatagc aatacccaag
    31741 ccattcataa cacttggaat ctcactagac gctttataaa tacgcaaacc ggggcgagat
    31801 acacgcttga tttgttcaat tacaggacga cctgcatagt attttaattg aatttccaat
    31861 atagacttta cgtcagatga aactgcgaag tcctcaatat atccttcttc tttcaatacc
    31921 tttgcaatag cacactttaa ttttgaagaa ggcattgcaa ccgctgcttt attagcacgt
    31981 tgcgcattgc ggatacgagt caacatatcg gaaataggat catgcatact cattcttaat
    32041 tactcctatt accagctggc tttaacaaca cccggaattt cgccacgcat ggcgatttca
    32101 cggattttaa tacgacccaa accaaattta cggaaagtac cacgagggcg acctgtcaaa
    32161 gcacaacgac gacgttgacg cacaggtgcc gcattacgag gaatggattg aaacctcaaa
    32221 cgagcctcaa aacgctcttc ctcagttgca ttcgaatcat tgattaccgc tttaattgcc
    32281 gcgcgtttag ccgcatattt tttagccaaa gcttgacgtt tcagattacg attaataagt
    32341 gctttcttag ccatgattat cctttgaacg gaaatttaaa caatgacaat aaagctttcg
    32401 cttcctcatc ggtttttgct gtagtagtaa tagtaatatt caaaccacgc aaagcatcaa
    32461 ttttatcgta ttcaatttcc ggaaaaataa tttgctcacg aacacccata ttgtaattgc
    32521 cacggccatc aaatgattta ccgctcacac cacggaagtc acgtacgcga ggtaatgcaa
    32581 tagtaatcaa acgatccaag aattcaaaca tttgatcacg acgcaatgtt actttgcaac
    32641 caaccggata gttatcacgg attttaaaac ctgcgataga tttacgggca acagtaacaa
    32701 ccggtttttg accggcaatt ttctctaaat cggaaacagc atgttccata acttttttgt
    32761 cagcaacagc ctcacccaca cccatattca aggtgatttt ttcaatacgc gggacttcca
    32821 ttactgattt gtaaccaaat tgtttaacca attcaggaac aactgtctct ttataaaact
    32881 ctctcaaccg agccatgtta tctccttatg ccccaatgat agagccattt gatttgaaga
    32941 aacgaacgcg tttaactttg ccttcatttt caatcagctt aataccaaca cggtccgctt
    33001 tattagtttc cggattcagg attgcgatat tagaaatatc caaaggcatt tctttagtaa
    33061 taataccgcc ctcaatgcca cgcattggat taggtttttg atggcgtttt acaacattaa
    33121 cgccctcaac aacaacttta tcacccaaca ctcgaactac ttgaccctgc ttacctttat
    33181 ccttaccagc aattactaca accctatcgc ctttaatgat tttattcatc gtgccattcc
    33241 ttataatact tcaggtgcca atgaaacgat tttcataaat cgctcagtac gcaattcacg
    33301 ggttaccgga ccaaagatac gagtacccaa aggttcaagt ttattattca gtaacacggc
    33361 ggcattgtta tcgaatttaa ttaacgcacc atcaggacga cgtacaccct tagcagtacg
    33421 aacaactacc gcattatata catcgccttt tttgacacgg ccacgcggag ccgcatcttt
    33481 aactgccact ttaataatat cgccaacaga agcgtagcga cgcttagatc cgcccaatac
    33541 cttgatacac attacgcgac gcgcaccaga gttatcagcc acatctaaga tggtctgcat
    33601 ttgaatcatg ttattacctt taaattaacc aacttaattt accactttca gataacttac
    33661 agcaaagccg ctgcttatta aatgaaacct tgcggttcaa gtaaaccagt cttggacccc
    33721 gaaagggaag aaacttccag aagaaactga aagacaggaa acgaagttta cacgcaaatt
    33781 aaatttgctg caatacttcg tttcccattc caagcacgtt gctttaattc ttaaatagaa
    33841 cgtgctttct caaccagctc actgacaacc caagatttag tttttgacaa tggacgggat
    33901 tccgatataa caaccacatc accaattcca tattgattat tttcatcatg ggcatggatt
    33961 ttagtagata accgaataat cttaccatac agcggatgtt ttactttacg ctcaaccaat
    34021 actgttacgg ttttatccat tttgtcgctt actactttgc cttgcaaagt acgaacattt
    34081 ttagtttcgc tcattactta gcaccttttt cagttaaaac ggttttaata cgagcaatat
    34141 cgcgacgtac acgtttcaat tcacttggtt tgcctaattg accggtagcg ttttgcatac
    34201 gtaagccaaa ctgagctttc aacaagtcca acaaatctgc attcaactgc tcaacggatt
    34261 tgtctttcaa ttcatttgct ttcattattg acccacctgt cttactacaa aggttgtagg
    34321 aataggcaat ttggcagcag ccaactcgaa tgcttcacga gccagttcct ctggaacgcc
    34381 atccatttca tacaacactt tacctggttt aatttcggca atgtaatatt ccacgttacc
    34441 tttaccgcca cccatacgaa cttgaatagg cttttcagta atcggtttat cagggaatac
    34501 acgaatccaa atacgaccac cacgtttgat atgacgggtc attgcacgac gagcagcttc
    34561 gatttgacgg gcagtcaaac gaccacgacc tacggctttc aagccgaact caccgaaact
    34621 taccttatta ccgcgagtag cgatgccagt attgcgaccc ttttgttgct tacggtattt
    34681 cagtctagtt ggctgcagca ttacgtctac ctgcctttct ttgtttactc tcatgttcag
    34741 gtttggaaga tttaatattg ccttccgtat aaacccaaac tttcagaccc aatacaccat
    34801 atgtggtgtg cgcttcgctg gttgcataat ctacatttgc acgtaaagta tgcaatggca
    34861 cgcgaccttc acgataccat tcgctacggg caatatccgc accattcaga cggcctgaag
    34921 tcataatctt aatgccttta gcaccagaac gcattgcatt ttgcattgct cgtttcatag
    34981 cacgacggaa ttgaacgcgc ttttccaact gctgggcaat accgtcagca ataatttgag
    35041 catccaactc aggacggcgg atctcttcaa tatttacatg aacaggtaca cccatcaaga
    35101 cttgcaagtc acgtttcaaa acctcgatat cctcaccttt tttaccgata accacacccg
    35161 gacgagcgga gtgaatggta atgcgtgcag attttgcagg gcgttcaata accactcgac
    35221 caaccgaagc attggccaat ttttgacgca aataattgcg aacatcgata tcctgcttca
    35281 aaacagtaga aaagtcggtg cttttagcaa accattttga agcccagtct ttagttaccg
    35341 ccaggcgaaa gcctgtaggg ttaatctttt gtcccatagc ttttccttag ttacccactg
    35401 tcacattgat atgacaagtt tgtttttcga tgcggttacc gcgacctttg gcgcgagctt
    35461 gaaaacgttt caagcttggg cctttgtcaa caaagatagt taccactttc agttcatcaa
    35521 tgtccgcacc gttattgtgc tcggcattag caatagctga ctccaatact tttttaatca
    35581 gctcggcacc ttttttagga ctgaaagcca aaatattcaa agcttgggca acgtctttac
    35641 cacgaatcaa atcagctacc aaacgagcct tttgagcaga gatacgggca tttttatgtt
    35701 gtgcatttac tctcatgatt caccttattt ctttttagcc tttttatcgg ccaagtggcc
    35761 tttaaaggta cgggtcaatg agaattcgcc taatttatga ccaaccatat tgtcgctgat
    35821 aaacacaggc acatgggtgc ggccgttgtg cacagcaatg gtcagaccga taaaatcagg
    35881 cagaatggta gaacgacgag accaggtttt aatcgggcgt ttgtcgttgc ttgcgcgagc
    35941 agcatctact tttttcagca aatgcaggtc tacatatggg ccttttttca atgaacgagc
    36001 catactaaat taacctttat ttgagtaacg gcgacgaaca atcatgttat ccgtgcgttt
    36061 gttattacga gtgcggtagc ctttagcagg agtaccccat gggctgaccg gttcgcgggc
    36121 ctcgcccgta cggccttcac caccaccatg cgggtgatcg acaggattca tgacaacacc
    36181 gcgtacggtc ggacgaatac cgcgccaacg gttggcaccg gctttaccga tttttttcag
    36241 gctttgctct tcgttaccaa cttcaccgat ggtcgcacgg caatttacgt tgattttacg
    36301 gacttcgcca gagcgcagac ggacttgagc gtacgcgcct tctttagcca gcaataccgc
    36361 agaagcaccg gcagaacgtg cgatttgagc acctttaccg ggtttcattt cgatacagtg
    36421 gatagtcgta ccaacgggaa tgttgcggat cggcagggtg ttgcctactt tgatggcagc
    36481 ttcagcgccg gaaactaata cagcaccggc ttgaataccg cgaggagcaa tgatgtaacg
    36541 acgctcgccg tctgcatagc acaacagtgc gatgaaggca gtacggttag gatcgtattc
    36601 gatacgctct actttagcag gaatgccgtc tttgttacgt ttaaagtcta caacacggta
    36661 atggtgttta tgaccgccgc ctttgtgacg ggtggtgata tgaccattat tgttacggcc
    36721 ggcagtagaa tttttctttt caagcaaggg tgcataaggt gcacctttgt gcaaaccttc
    36781 tgttaccacg cgaaccatgc cgcgacggcc tgcagaggtc ggcttcattt taacgattgc
    36841 cattttgttt attccttatc tgcagctgca gcagcggctt ccaaatccaa ctcttgaccg
    36901 gcagccaagc ttacataagc ttttttaaca tcgctgcggc ggcccaaagt acgaccaaaa
    36961 cgcttagttt tgcctttagt tgtaacggta gttacagaag caacttgaac accgaacagc
    37021 agctcgacag ccgctttgat ttcaggtttg gctgcatttg ccaaaacttt aaacgtcatt
    37081 tggttgcgtt tttcagccaa tacgttgctt ttttcagaaa cgataggtgc caaaatcact
    37141 tgagtcaaac gttgttgatt catacccatt gctcctctaa ttgtgcaact gcatctttag
    37201 tgatgattac ttttttgtaa cgcagcaagc tgtaaggatc aacttgttga gcttccaaaa
    37261 ccaacacgtt tggcaagttg cgtgaagcca agtaaacatt ctcgtcgagc tgtttggtta
    37321 caaacaacac ttgctccaga cccagatttt tcacttgttc ggcaaaaact ttggttttag
    37381 gagtttcggc agtcaacgcc tcaatcgcaa acaaacgctc gtcacgagtc aattgggaca
    37441 gaatagtcgc cataccggca cggtacattt tgcggtttac tttttgagtg aagttttcgt
    37501 cgggtttgtt cgggaacgcg cgaccacctt tacgccacag cggagaagaa gtcataccgg
    37561 aacgggcacg gccggtacct ttttgacgcc atggtttttt ggttgagtgt tttacttcgg
    37621 cacgggtttt ttgagcgcga ttgccggagc gggcgtttgc caaataggca tttaccagct
    37681 gatgaaccaa cgcttcattg tattcgcggg cgaacaaagc atcagaaaca gacagactgc
    37741 ctgaaacttg tcctttagcg tcaattactt tcaattccat tacgcaccta ctttcacgct
    37801 gggacgaact acaacatcgc tgttgaccgc acctggaaca gcacccttaa ccaacagcag
    37861 ttggcgttct gcatcaacac ggacaacttc caatttttga acagttgctt tggtgttgcc
    37921 gtattggccg gccatgcgtt taccggggaa cacgcgaccc gggtcttgcg ccataccgat
    37981 agagcctgga acgcggtgag agcgggagtt accgtgggaa gtacgttggg caccgaagtt
    38041 atgacgtttg atcgtaccgg agaaaccttt acctttagag gtaccggtta catcgaccag
    38101 ctggccgact tcaaacatag aaacggtgat ttcgtcaccg gctttcaatt cagccagttt
    38161 ttcttcagtc aaagcaaact caatcaaacc gcgaccggct tcaacacctg cttttgcaaa
    38221 gtgcccggct tcggctttat tgacacgatt ggcttttttc tgaccaaagg taacttgaac
    38281 ggcagtatag ccgtcagtat ctttggattt tacttgtgta acgcggttgg cagacatatc
    38341 caaaacggtt accggaacag aaacaccctg ttcgtcgaac acgcgggtca taccaacttt
    38401 gcgtccaacc agacctaaag tcatgattat tttcctttta aagtaaaggg acaggctacg
    38461 attggcctgt ctttcagaca aagttaaact tggcacaaat gtaccaagct cggcattata
    38521 tctgacaagt caaagaaata tcaacagaaa tatcagaaat atcttcaata tgccgtctga
    38581 agcgttttga attttcagac ggcatagggt cggactcttt taaagggtcg gtatccggtc
    38641 atcacagcgt atgcatcttt ctccgacaaa ccggaatatg gttgatgact gcatccatta
    38701 tttctttgag atggtagttt tcgtatgctg ggacctttgc aaaattcctt tccctcccga
    38761 cagccgaaac cccaacacag gttttcggct gttttcgccc caaatacctc ctaattctac
    38821 ccaaataccc ccttaatctt ccctggatac ccgataatca ggcatccggg ctgcctttta
    38881 ggcggcagcg ggcgcactta gcctgttggc cgctttcaac aggttcaaac acatcgcttt
    38941 cag
//
LOCUS       DAXIFD010000004        32527 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.004, whole genome shotgun sequence.
ACCESSION   DAXIFD010000004 DAXIFD010000000
VERSION     DAXIFD010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 32527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32527
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.004"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..475)
                     /locus_tag="ACFOCN_000153"
     CDS             complement(<1..475)
                     /locus_tag="ACFOCN_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6969375.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCEPVNEQTSFNNLEPMTGFE
                     HTVTFDFQGIKMVIPYGYLARYTQDNATKWLSDTPGQDAYSINLIEISVYYKKTDQGW
                     VLEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAY"
     gene            complement(887..1162)
                     /locus_tag="ACFOCN_000154"
     CDS             complement(887..1162)
                     /locus_tag="ACFOCN_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6969376.1"
                     /translation="MNASNWSVYLILCENSAFYCGISPNPQQRLAAHTTGKGAKYTRV
                     FKPVAMRIVAGGMDKGTALRQEIAVKKLTAAQKRQLWEQAEKMPSET"
     gene            complement(1159..2442)
                     /locus_tag="ACFOCN_000155"
     CDS             complement(1159..2442)
                     /locus_tag="ACFOCN_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6969377.1"
                     /translation="MTVSKSGFIGQIFSRNMLVCIFTGFTSGLPLYFLINLIPAWLRS
                     EQVDLKSIGLMALIGLPFTWKFLWSPLMDAVRLPVLGRRRGWMLLTQAGLLAALAAYA
                     FLNPRNHLPLIAGLSVLVAFFSASQDIVLDAFRREILSDEELGLGNSVHVNAYRVTAL
                     IPGSLSLVLADRMPWSEVFVITSLFMLPGLLMTLFLAREPVLPPAVPKTLKQTVVEPF
                     KEFFTRKGIASAVCVLLFIFLYKLGDSMATALATPFYLDMGFSKTDIGLIAKNAGLWP
                     AVAAGILGGVWMLKIGVNKALWLFGAVQAVTVLGFVWLAGFGPFDTVGTGERLMLAAV
                     IGAEAVGVGLGTAAFVSYMARETNPAFTATQLALFTSLSAVPRTVINSFAGYLIEWLG
                     YVPFFQLCFALALPGMLLLLKVAPWNGEKTQDAGR"
     gene            complement(2446..2571)
                     /locus_tag="ACFOCN_000156"
     CDS             complement(2446..2571)
                     /locus_tag="ACFOCN_000156"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969378.1"
                     /translation="MPSEHSFRRHFAFERQNGGAGAVFFSGWAIFATIGFYFLAV"
     gene            complement(2596..4014)
                     /gene="glnA"
                     /locus_tag="ACFOCN_000157"
     CDS             complement(2596..4014)
                     /gene="glnA"
                     /locus_tag="ACFOCN_000157"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HFC6969379.1"
                     /translation="MSIKNAVKLIEESEARFVDLRFTDTKGKQHHFTVPARIVLEDPE
                     EWFENGQAFDGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDVTVVITCDVIDPADGQ
                     GYDRDPRSIARRAEAYLKSSGIGDTAYFGPEPEFFVFDGVEFETDMHKTRYEITSESG
                     AWASGLHMDGQNTGHRPAVKGGYAPVAPIDCGQDLRSAMVNILEGLGIEVEVHHSEVG
                     TGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQ
                     SIWKDGQNLFAGDGYAGLSDTALYYIGGIIKHAKALNAITNPSTNSYKRLVPHFEAPT
                     KLAYSAKNRSASIRIPSVNSSKARRIEARFPDPTANPYLAFAALLMAGLDGIQNKIHP
                     GDPADKNLYDLPPEEDALVPTVCASLEEALAALKADHEFLLRGGVFSKDWIDSYIAFK
                     EEDVRRIRMAPHPLEFEMYYSL"
     gene            complement(4288..4665)
                     /locus_tag="ACFOCN_000158"
     CDS             complement(4288..4665)
                     /locus_tag="ACFOCN_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HFC6969380.1"
                     /translation="MKKMLCLAVFALGLATPAVAADWVLVDSNTATFGDADSRTDNSA
                     WFETRFAKPQKYGNGKFFNTAKTLEEMDCSGKRFRILTATWYSKSGNSIASYTPSYAE
                     WNYVIPGTLGEAQYKFVCNGYPR"
     gene            4836..5645
                     /gene="aroE"
                     /locus_tag="ACFOCN_000159"
     CDS             4836..5645
                     /gene="aroE"
                     /locus_tag="ACFOCN_000159"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HFC6969381.1"
                     /translation="MTALPRYSVFGNPVAHSKSPQIHQQFALQEGVDIEYERICADIG
                     GFAQAVSTFFETGGCGANVTVPFKQEAFHLADEHSERALAAGAVNTLIPLKNGKLRGD
                     NTDGIGLTNDITQVKNIAIEGKTILLLGAGGAVRGVIPVLKEHRPARIVIANRTRAKA
                     EELAQLFGIEAVPMADVNGGFDIIINGTSGGLNGQIPDIPPDIFQNCALAYDMVYGCA
                     AKPFLDFARQSGAKKTADGLGMLVGQAAASYALWRGFTPDIRPVIEYMKAM"
     gene            5647..6348
                     /gene="mtgA"
                     /locus_tag="ACFOCN_000160"
     CDS             5647..6348
                     /gene="mtgA"
                     /locus_tag="ACFOCN_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HFC6969382.1"
                     /translation="MFRIVKWLIALPVGIFIFFNAYVYGNIITYRAVAPHRTAFMSMR
                     MKQFEQEGRDVALDYRWVPYNRISVNLKKALIASEDAHFAGHGGFDWGGIQNAIRRNR
                     NSGKVKAGGSTISQQLAKNLFLNESRSYIRKGEEAAITAMMEAVTDKDRIFELYLNSI
                     EWHYGVFGAEAASRYFYQIPAAKLTKQQAAKLTARVPAPLYYADHPKSKRLRNKTNIV
                     LRRMGSAELPESDTD"
     gene            complement(6551..6626)
                     /locus_tag="ACFOCN_000161"
     tRNA            complement(6551..6626)
                     /locus_tag="ACFOCN_000161"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6591..6593),aa:Phe,seq:gaa)
     gene            complement(6817..7551)
                     /gene="lptB"
                     /locus_tag="ACFOCN_000162"
     CDS             complement(6817..7551)
                     /gene="lptB"
                     /locus_tag="ACFOCN_000162"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HFC6969383.1"
                     /translation="MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVVGLLGPNGA
                     GKTTSFYMIVGLIAADAGSVMLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQN
                     IRAILEISTKDKSRIDGEVEKLLADLNIERLRNNPAPSLSGGERRRVEIARVLAMKPH
                     FILLDEPFAGVDPIAVIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGTV
                     LASGKPDDLVGNEQVRSVYLGKNFKY"
     gene            complement(7625..8155)
                     /gene="lptA"
                     /locus_tag="ACFOCN_000163"
     CDS             complement(7625..8155)
                     /gene="lptA"
                     /locus_tag="ACFOCN_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HFC6969384.1"
                     /translation="MIQKICKLFVLIAFFSASPAFALQSDSRQPIQIEADQGSLDQAN
                     QSTTFSGNVVIRQGTLNISAARVNVTRGGKGGESVRAEGSPVRFSQTLDGGKGTVRGQ
                     ANNVAYSSAGSTVVLTGNAKVQRGGDVAEGAVITYNTKTEVYTISGSTKSGAKSASKS
                     GRVSVVIQPSSTQKSE"
     gene            complement(8136..8717)
                     /gene="lptC"
                     /locus_tag="ACFOCN_000164"
     CDS             complement(8136..8717)
                     /gene="lptC"
                     /locus_tag="ACFOCN_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HFC6969385.1"
                     /translation="MKIRWRYGIAFPLILAVALGGLSAWLGRISEVEIEEVRLNPDEP
                     QYTMDGLDGRRFDEQGYLKEHLSAKGAKQFPESSDIHFDSPHLVFFQEGRLLYEVGSD
                     EAVYHTENKQVLFKNNVVLTKTADGKRQAGKVEAEKLHVDTESQYAQTDTPVSFQYGA
                     SHGQAGGMTYDHKTGMLNFSSKVKATIYDTKDM"
     gene            complement(8714..9250)
                     /locus_tag="ACFOCN_000165"
     CDS             complement(8714..9250)
                     /locus_tag="ACFOCN_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KdsC family phosphatase"
                     /protein_id="HFC6969386.1"
                     /translation="MQAISPELQARAAKIKLLILDVDGVLTDGRIFIRDNGEEIKSFH
                     TLDGHGLKMLQASGVQTAIITGRDAPSVGIRVKQLGINYYFKGISDKRAAYEELRAQV
                     GVEEAECAFVGDDVVDLPVMVRCGLPVAVPDAHWFTLQHAAYIAKRPGGAGAVREVCD
                     LIMQAQGTLGAALNEYIK"
     gene            complement(9315..10289)
                     /locus_tag="ACFOCN_000166"
     CDS             complement(9315..10289)
                     /locus_tag="ACFOCN_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HFC6969387.1"
                     /translation="MAENGKYLDWAREVLHTEEEGLREIATELDENFVLAADALLHCK
                     GRVVITGMGKSGHIGRKMAATMASTGTPAFFVHPAEAAHGDLGMIVDNDVVVAISNSG
                     ESDEIAAIIPALKRKDITLVCITARPDSTMARHADIHITASVSKEACPLGLAPTTSTT
                     AVMALGDALAVVLLRARAFTPDDFALSHPAGSLGKRLLLRVADIMHKGGGLPAVRLGT
                     PLKEAIVSMSEKGLGMLAVTDGQGRLKGVFTDGDLRRLFQECDNFTGLSIDEVMHTHP
                     KTISAERLATEALKVMQANHVNGLLVTDADGVLIGALNMHDLLAARIV"
     gene            10386..11441
                     /gene="tal"
                     /locus_tag="ACFOCN_000167"
     CDS             10386..11441
                     /gene="tal"
                     /locus_tag="ACFOCN_000167"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HFC6969388.1"
                     /translation="MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNP
                     AIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVQAACDVCLAEHESTGGKTG
                     FVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVN
                     LTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIHVVASFFISRVDGALDTTLPDHLK
                     GKIAIALAKAAYQDWAQYFGSPEFAALETQGANRVQLLWASTGVKNPAYPDTLYVDSL
                     IGAHTVNTVPDATLKAFIDHGTAKATLTEGADEAQAQLAETAALGIDVETLAARLQED
                     GLKQFEEAFEKLLAPLV"
     gene            11456..11590
                     /locus_tag="ACFOCN_000168"
     CDS             11456..11590
                     /locus_tag="ACFOCN_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969389.1"
                     /translation="MPSERLSDGIARLTGHSAAYQGFTLKILMGKKLMHDITHQHKRK
                     "
     gene            11595..11885
                     /locus_tag="ACFOCN_000169"
     CDS             11595..11885
                     /locus_tag="ACFOCN_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969390.1"
                     /translation="MAKALEIISPNEIYSDLIFKDPVPPHTIYTELMKLVSRNASNER
                     IADRAFDFFSSGLMDGSATEEQYNALYDLTLLEEPGMELNKDEIMALINSLK"
     gene            11902..12789
                     /gene="gluQRS"
                     /locus_tag="ACFOCN_000170"
     CDS             11902..12789
                     /gene="gluQRS"
                     /locus_tag="ACFOCN_000170"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HFC6969391.1"
                     /translation="MYTGRFAPSPTGLLHIGSLLTAAASYADARSNGGKWLVRMEDLD
                     PPREMPGAASHILHTLEAFGFEWDGEVAYQSRRYALYEETLCRLQTAGLVYPCHCSRK
                     DWQAAAVHGADGFVYNGRCRNPQQRPALQGKQPAWRIRVPDRDIGFSDGIVGGYAQNL
                     ARDIGDFVLLRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPT
                     PQYAHLPLLTNAQGQKWSKQTLAPALDLNRREQLLRQVFRYLKLPEAPETDRPAELLD
                     WAVAHWDMGKVPKHAITTP"
     gene            complement(12859..13869)
                     /gene="dusA"
                     /locus_tag="ACFOCN_000171"
     CDS             complement(12859..13869)
                     /gene="dusA"
                     /locus_tag="ACFOCN_000171"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HFC6969392.1"
                     /translation="MNDNTHTLPPRHLSVAPMLDWTDRHYRYMARQITRNTWLYSEMV
                     NAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPS
                     PRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTL
                     RDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTN
                     EAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI
                     QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLKDNDGSLILEAWKEVERANT
                     RE"
     gene            complement(13900..14391)
                     /gene="dtd"
                     /locus_tag="ACFOCN_000172"
     CDS             complement(13900..14391)
                     /gene="dtd"
                     /locus_tag="ACFOCN_000172"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HFC6969393.1"
                     /translation="MRAVIQKTVGAKVDVVSEAGTETCGKIDGGFVVLLGVTHSDTEK
                     DARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADAASGRRPSFSQAAP
                     AEQAQQLYLRTAELLRGHGIHVETGRFRTHMQVSLCNDGPVTILLDSFMTRISPKMKV
                     VPD"
     gene            complement(14465..15223)
                     /locus_tag="ACFOCN_000173"
     CDS             complement(14465..15223)
                     /locus_tag="ACFOCN_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6969394.1"
                     /translation="MKQKKTAAAVIAAMLAGFAAAKAPEIDPALVDTLVAQIMQQADR
                     HAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDVQNRFKIAEASFYAEEY
                     VRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQQLLLKGLSFEGLMKR
                     YPNDEQAFDGFIMAQQLPEPLASQFAAMNRGDVTRNPVKLGERYYLFKLSVVGKNPDA
                     QPFELVRNQLEQGLRQEKARLKIDALLEENGVKP"
     gene            complement(15294..16160)
                     /locus_tag="ACFOCN_000174"
     CDS             complement(15294..16160)
                     /locus_tag="ACFOCN_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6969395.1"
                     /translation="MKAKILTSVALLACSGSLFAQTLATVNGQKIDSSVIDAQVAAFR
                     AENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDD
                     KKPSFKTVWQAVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEI
                     LTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLEQGVPPLYQ
                     AIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAERIDRAVG
                     ALLGKANIKPAK"
     gene            complement(16209..16487)
                     /locus_tag="ACFOCN_000175"
     CDS             complement(16209..16487)
                     /locus_tag="ACFOCN_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6969396.1"
                     /translation="MPAVDLIRERLQTLDPLVLEIGDESHLHKGHAGNTGGGHYAVLV
                     VSGRFEGVSRLNRQKTVKSLLKDLFSGGMIHALGIRAATPDEYFHTAD"
     gene            complement(16487..16777)
                     /locus_tag="ACFOCN_000176"
     CDS             complement(16487..16777)
                     /locus_tag="ACFOCN_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HFC6969397.1"
                     /translation="MEYFMLLATDGENVYEARMAARPEHLKRLETLKSEGRLLTAGPN
                     PLPEDSNRVSGSLIVAQFESLDAAEAWAEDDPYVHAGVYSEVLIKPFKAVFK"
     gene            complement(16780..17310)
                     /locus_tag="ACFOCN_000177"
     CDS             complement(16780..17310)
                     /locus_tag="ACFOCN_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HFC6969398.1"
                     /translation="MKFVSDLLSVILFFATYTVTKNMIAATAVALVAGVVQAAFLYWK
                     YKKLDTMQWVGLVLIVVFGGATIVLGDSRFIMWKPSVLFWLGALFLWGSHLAGKNGLK
                     ASIGREIQLPDAVWAKLTYMWVGFLIFMGIANWFVFTRFESQWVNYKMFGSTALMLVF
                     FIIQGIYLSTCLKKED"
     gene            17618..19972
                     /gene="tspA"
                     /locus_tag="ACFOCN_000178"
     CDS             17618..19972
                     /gene="tspA"
                     /locus_tag="ACFOCN_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_164729270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark-like protein
                     TspA"
                     /protein_id="HFC6969399.1"
                     /translation="MKNNRQIKLIAASVAVAASFQAHAGLGGLNIQSNLDEPFSGSIT
                     VTGEEAKALLGGGSVTVSEKGLTAKVHKLGDKAVIAVSSEQAVRDPVLVFRIGAGAQV
                     REYTAILDPVGYSPKTKSALSDGKTHRKTAPTAESQENQNAKALRKTDKKDSANAAVK
                     PAYNGKTHTVRKGETVKQIAAAIRPKHLTLEQVADALLKANPNVSAHGRLRAGSVLHI
                     PNLNRIKAEQPKPQTAKPKAETASMPSEPSKQATVEKPVEKPEAKVAAPEAKAEKPAV
                     RPEPVPAANTAASETAAESAPQEAAASAIDTPTDETGNAVSEPVEQVSAEEETESGLF
                     DGLFGGSYTLLLAGGGAALIALLLLLRLAQSKRARRTEESVPEEEPDLDDAADDGIEI
                     TFAEVETPATPEPAPKNDVNDTLALDGESEEELSAKQTFDVETDTPSNRIDLDFDSLA
                     AAQNGILSGALTQDEETQKRADADWNAIESTDSVYEPETFNPYNPVEIVIDTPEPESV
                     AQTAENKPETVDTDFSDNLPSNNHIGTEETASAKPASPSGLAGFLKASSPETILEKTV
                     AEVQTPEELHDFLKVYETDAVAETAPETPDFNAAADDLSALLQPAEAPSVEENITETV
                     AETPDFNATADDLSALLQPSKVPAVEENAAETVADDLSALLQPAEAPAVEENAAEITL
                     ETPDSNTSEADALPDFLKDGEEETVDWSIYLSEENIPNNADTSFPSESVGSDAPSEAK
                     YDLAEMYLEIGDRDAAAETVQKLLEEAEGDVLKRAQALAQELGI"
     gene            complement(20144..20560)
                     /gene="gloA"
                     /locus_tag="ACFOCN_000179"
     CDS             complement(20144..20560)
                     /gene="gloA"
                     /locus_tag="ACFOCN_000179"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004462 - lactoylglutathione lyase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0051596 - methylglyoxal catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HFC6969400.1"
                     /translation="MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFV
                     GYGDETDSTVLELTHNWDTERYDLGNAYGHIAIEVDDAYEACERVKRQGGNVVREAGP
                     MKHGTTVIAFVEDPDGYKIEFIQKKSGDDSVAYQTA"
     gene            complement(20607..21776)
                     /gene="lapB"
                     /locus_tag="ACFOCN_000180"
     CDS             complement(20607..21776)
                     /gene="lapB"
                     /locus_tag="ACFOCN_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008653 - lipopolysaccharide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HFC6969401.1"
                     /translation="MDNELWIILLPIILLPVFFAMGWFAARVDMKTVLKQAKSIPSGF
                     YKSLDALVDRNSGRAARELAEVVDGRPQSYDLNLTLGKLYRQRGENDKAINIHRTMLD
                     SPDTVGEKRARVLFELAQNYQSAGLVDRAEQIFLGLQDGEMAREARQHLLNIYQQDRD
                     WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALEANKKCTR
                     ANMILGDIEHRQGNFPAAVEAYAAIEQQNHAYLSMVGEKLYEAYAAQGKPEEGLNRLT
                     GYMQTFPELDLINVVYEKSLLLKGEKEAAQTAVELVRRKPDLNGVYRLLGLKLSDMNP
                     AWKADADMMRSVIGRQLQRSVMYRCRNCHFKSQVFFWHCPACNKWQTFTPNKIEV"
     gene            complement(21787..22101)
                     /locus_tag="ACFOCN_000181"
     CDS             complement(21787..22101)
                     /locus_tag="ACFOCN_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly LapA
                     domain-containing protein"
                     /protein_id="HFC6969402.1"
                     /translation="MKLIYTFIKIIILLLFLLLAVINTDAVTFSYLPGQKFDLPLIVV
                     LFGAFVVGIIFGMFALFGRLLSLRGENGRLRAEVKKNARLTGKELTAPPAQNAPESTK
                     QP"
     gene            22411..23409
                     /gene="ilvE"
                     /locus_tag="ACFOCN_000182"
     CDS             22411..23409
                     /gene="ilvE"
                     /locus_tag="ACFOCN_000182"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HFC6969403.1"
                     /translation="MSRPVPAVFGSVFHSQMPVLAYREGKWQPTEWQSSQDLSLAPGA
                     HALHYGSECFEGLKAFRQADGKIVLFRPTANIARMRQSADILHLPRPETEAYLDALVE
                     LVKRAADEIPDAPSALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKVGSPV
                     KILVETEHIRCAPHMGRVKCGGNYASAMHWVLKAKAEYGANQVLFCPNGDVQETGASN
                     FILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVSERNFTVDELKAAVENGAEA
                     ILTGTAAVISPVTSFVIGGKEIEVKSQERGYAIRKAITDIQYGLAEDKYGWLVEVC"
     gene            complement(23595..24380)
                     /gene="fabI"
                     /locus_tag="ACFOCN_000183"
     CDS             complement(23595..24380)
                     /gene="fabI"
                     /locus_tag="ACFOCN_000183"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HFC6969404.1"
                     /translation="MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL
                     EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSG
                     DFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM
                     GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR
                     RNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALSTEG"
     gene            complement(24535..25356)
                     /gene="dapD"
                     /locus_tag="ACFOCN_000184"
     CDS             complement(24535..25356)
                     /gene="dapD"
                     /locus_tag="ACFOCN_000184"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HFC6969405.1"
                     /translation="MSLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRV
                     AERLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVNKYFDKVPTKFADWSEDEFKNAG
                     FRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRT
                     TGEIYQGRVPTGSVVVSGSMPSKDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI"
     gene            complement(25366..25596)
                     /locus_tag="ACFOCN_000185"
     CDS             complement(25366..25596)
                     /locus_tag="ACFOCN_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969406.1"
                     /translation="MPSERRRRGIKVLPPFCIDSGAEKAIPAARPIPKRQCSATACVL
                     LTNMRLRGTIAHSFQMNILPENTGKRPTKHLT"
     gene            complement(25566..27209)
                     /gene="pgi"
                     /locus_tag="ACFOCN_000186"
     CDS             complement(25566..27209)
                     /gene="pgi"
                     /locus_tag="ACFOCN_000186"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6969407.1"
                     /translation="MNAFTRAWYALERHYQDTRHVLLRDRFACEPDRFERMHERLDGM
                     LFDYSKNRLGEDTLQLLCRLAETADLEGKMRALRTGAKVNGSEGRAALHTALRLPDGA
                     DAVYVDGRDVLPEIRRELNRALEFAHSLDDGSYQGITGKRITDFVHIGIGGSDLGPAM
                     CVQALEPFRRHIAVHFAANADPACLDAVLCRLNPETTVFCVASKSFKTPETLLNAQAV
                     KAWYRGAGFSESETACHFCAVSADTAAAAAFGIAAERVFAMYDWVGGRYSVWSSVGLP
                     VMVAVGGARFRELLAGAHAMDSHFFHTPPRRNIPVLMALIAVWYNNFQHADGQTAVPY
                     SHNLRLLPVWLNQLDMESLGKSRASDGSPAVCKTGGIVFGGEGVNCQHAYFQLLHQGT
                     RLIPCDFIVPMTAQGVEDGRSRFTVANAFAQAEALMKGKTLDEARAELADLPEAERER
                     LAPHKEFPGNRPSNSILLDRLTPYNLGMLMAAYEHKTFVQGTIWNVNPFDQWGVEYGK
                     QLAKTIIGELEGGTSVHDASTEGLMAFYRECRLKGGGAA"
     gene            27719..28951
                     /gene="pilG"
                     /locus_tag="ACFOCN_000187"
     CDS             27719..28951
                     /gene="pilG"
                     /locus_tag="ACFOCN_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4 pilus assembly protein PilG"
                     /protein_id="HFC6969408.1"
                     /translation="MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARK
                     KLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGN
                     PSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
                     KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTV
                     MDMSDFFVSYGWMVLIALGFAIYGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTI
                     ARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATE
                     LFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIG
                     TLLVAMYLPLFNLGNVVA"
     gene            29025..29885
                     /locus_tag="ACFOCN_000188"
     CDS             29025..29885
                     /locus_tag="ACFOCN_000188"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HFC6969409.1"
                     /translation="MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVF
                     AKKHLNLPLTEKESRTFNLMKPDSCCPKCRVPIRAWQNIPIVSYLLLRGKCASCQTKI
                     SIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
                     LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAAL
                     GAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRA
                     VNWWLTHPVL"
     gene            29887..30519
                     /gene="coaE"
                     /locus_tag="ACFOCN_000189"
     CDS             29887..30519
                     /gene="coaE"
                     /locus_tag="ACFOCN_000189"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258461.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HFC6969410.1"
                     /translation="MTVWVGLTGGIGSGKSAAAQCFADLGVPRIDADAAAHSLTASDG
                     IALPEIRRLFGDTVFDTQGLLRRDILRKEVFASPSRKALLESVMLPLIFSEIKKQQET
                     FTDAVYGIVEIPLLTEKRQFVSLIRRVLTISAPLEKRIGRVMARSGLTRGEVADIISH
                     QASESERLLLADDVLLNDGSLKSLCEKTMRLHAFYSGIFASKPTQGKHND"
     gene            30512..30721
                     /locus_tag="ACFOCN_000190"
     CDS             30512..30721
                     /locus_tag="ACFOCN_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HFC6969411.1"
                     /translation="MTESRQTRLQVKCPTCQTAVVWKPENAFRPFCSQRCKLIDLGGW
                     ADGKYTVSSQTESLPEISEPDMAYR"
     gene            complement(30806..32482)
                     /gene="pilB"
                     /locus_tag="ACFOCN_000191"
     CDS             complement(30806..32482)
                     /gene="pilB"
                     /locus_tag="ACFOCN_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HFC6969412.1"
                     /translation="MSVGLLRILVQNQVVTVEQAEHYYNESQAGKEVLPMLFSDGVIS
                     PKSLAALIARVFSYSILDLRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSD
                     PTQMPQIQKTVSAAGIEVELVIVEDDQLAGLLDWVGSRSTSLLQELGEGQEEEESHTL
                     YIDNEEAEDGPVPRFIHKTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPI
                     AVRGQLASRIKVMSRLDISEKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMR
                     ILNSDAASLNIDQLGFEPFQKKLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNT
                     ESVNIATAEDPAEINLPGINQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETA
                     DIAIKAAQTGHMVFSTLHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSS
                     CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGCDRCRGQGYKGRAGVYEVMPISEE
                     MQRVIMNNGTEVDILDVAYKEGMVDLRRAGILKVMQGITSLEEVTANTND"
BASE COUNT         7666 a         9128 c         8277 g         7456 t
ORIGIN      
        1 gataggcaga tggcattttt ttaaccccgt aagtaagcaa tctttctccc atagtcgtgc
       61 ttaaactaca cgcatctttt cggataacaa tatcgtccac gctatccaaa ccgtcgcgta
      121 gaaattggat aaagtgcgct ttgttttgct ggttgtatgg ctcaagaacc cagccttggt
      181 cggttttttt gtaatagacg ctaatctcta tcaaattaat ggagtaagca tcctgcccgg
      241 gcgtgtcgga aagccatttt gtggcattgt cttgcgtata ccgtgcaaga tagccataag
      301 ggataaccat tttgatgccc tgaaaatcaa atgtaaccgt atgttcaaat cctgtcattg
      361 gctcgagatt gttgaaactg gtttgttcat taacaggttc acatgaggtc atagtaaaaa
      421 cactcccaat aaacaaaata aaaagttgat aaatggtagt agcatatggt ctcataattt
      481 caagcttaga aattagttaa agaatatatt catggtagat actaactctt taagttgaca
      541 tattgtgcga tgtcgagggc tgtaccgtat tttcccatcg tattttccca tcgtattttc
      601 ccatcgtatt ttcccgttct ttatatgagc ggcaggcatc ctcataaaag aagggatacc
      661 gataaggaaa aataccccag cataaaaaat atactgatta atcaatacaa atccaacaaa
      721 cagttcatcg tattcttttc tgttggcgta taaaaatact gatatattcc ttcactttca
      781 tagggcgacg ctttatgtac cgtcctgtgt gttgaaacgt cggttttcct taccgcctgc
      841 cccgcttttc cctgattgct gccaactgcc gtccgaactt gaaccgtcag gtttcagacg
      901 gcattttttc tgcctgctcc cacaattgcc gtttttgtgc ggcggtcagt tttttgacgg
      961 cgatttcctg cctgagtgcc gtgcctttat ccatcccgcc tgcaacgata cgcatcgcca
     1021 ccggtttgaa tacgcgggta tatttcgcgc ctttaccggt tgtgtgggcg gcaagccgct
     1081 gttgcggatt cgggctgatg ccgcaataga acgcgctgtt ttcacacaat atcaggtaaa
     1141 cgctccagtt tgacgcgttc atctgcctgc atcctgagtt ttctccccgt tccaaggcgc
     1201 aactttcagc agcagcagca tacccggtag ggcgagtgcg aaacacagtt ggaaaaacgg
     1261 tacataaccg agccattcaa tcagataacc ggcaaaggaa ttgatgaccg tgcgcgggac
     1321 ggcggacagg ctggtaaaca gcgcaagctg cgttgcggta aatgcgggat tggtttcacg
     1381 cgccatatac gatacgaacg ccgccgtccc caaccccacg ccgaccgctt ccgcgccgat
     1441 aactgccgcc agcatcagcc tctcgcctgt gccgaccgtg tcgaaaggtc cgaaccctgc
     1501 cagccataca aaccccaaaa cggttacagc ctgcaccgcg ccaaatagcc acaaggcttt
     1561 gtttacgccg attttcagca tccacacgcc gcccaagata cctgccgcca ctgccggcca
     1621 cagtcctgca tttttcgcaa tcaaaccgat gtctgtcttg ctgaaaccca tatccagata
     1681 aaacggcgtt gccaacgcgg ttgccatact gtcgccgagt ttgtaaagga agataaacag
     1741 cagcacgcac accgccgaag cgatgccctt gcgcgtaaaa aattctttaa acggctctac
     1801 cacggtctgc ttcaacgttt taggaacggc aggcggcaac acgggttcgc gcgcaagaaa
     1861 cagcgtcatc agaaggccgg gcagcataaa taatgaagtg ataacaaata cttctgacca
     1921 cggcatcctg tctgccaaca ccaaactcaa tgaaccggga atcagggcgg taacccgata
     1981 ggcgttcaca tgaaccgagt tgcccaaacc caattcttcg tccgacaaaa tctcgcgcct
     2041 gaacgcatcc aatacaatgt cctgactggc ggaaaaaaaa gcgacaagca ccgacaagcc
     2101 ggcaatcagc ggcagatgat tacgggggtt taaaaaggca taggccgcca aagccgccag
     2161 caaccctgcc tgcgtcagca gcatccaccc gcgccgccgt cccaaaacgg gcagcctgac
     2221 cgcgtccatc agcggcgacc acaaaaattt ccaagtaaac ggcagaccga ttaacgccat
     2281 cagcccgatg ctcttcaaat ccacctgctc gctgcgcaac cacgccggaa tcaggttaat
     2341 cagaaagtac agcggcagcc ccgaggtaaa ccccgtaaaa atacaaacaa gcatatttcg
     2401 ggaaaagatt tgcccgataa aacctgattt cgatacagtc atggttcaaa cagccaagaa
     2461 ataaaagcct attgtagcaa atatcgccca accgctgaaa aacaccgccc ctgctccgcc
     2521 gttttgccgt tcaaatgcaa aatgccgtct gaaactgtgt tcagacggca ttgcttttct
     2581 gaaaacccga cgtgcttaca ggctgtaata catttcaaat tccagcggat gcggtgccat
     2641 gcggatgcgg cggacatctt cctctttaaa ggcgatatag ctgtcgatcc agtctttgct
     2701 gaacacgccg ccgcgcagga ggaattcgtg gtcggctttg agggcggcga gggcttcttc
     2761 caaagaggcg caaacggtcg ggacgagcgc gtcttcttcc ggcggcaggt cgtacaggtt
     2821 tttatcggca ggatcgcccg gatggatttt gttttgaata ccgtccaaac ccgccatcaa
     2881 cagggcggca aatgccaaat acgggttggc ggtcggatcg gggaaacgcg cttcgatgcg
     2941 gcgcgccttg ctgctgttca cggacggaat gcggatggaa gcggaacggt ttttggcgga
     3001 atatgccagt ttggtcggtg cttcaaagtg cggcacgagg cgtttgtagg agttggtgga
     3061 cggattggta attgcgttca gggctttggc gtgtttgatg atgccgccga tgtagtagag
     3121 cgcggtgtcg ctcaagccgg catagccgtc gcctgcgaac aggttttgac cgtctttcca
     3181 aatggattgg tgaacgtgca taccgctgcc gttgtcgccc ataatcggtt tgggcataaa
     3241 ggtggctgtt ttgccgaagt tgtgggcaac gttttgaatc acatatttca tgtcttgggt
     3301 ttggtcggcg cgtttgacca aggtggcgaa acgcgtgccg atttccattt ggctgccggt
     3361 accgacttca ctgtggtgga cttcgacttc gatgccgagt ccttccaaaa tgtttaccat
     3421 cgcggaacgc aaatcctgac cgcagtcaat cggcgcgacg ggcgcgtagc cgcctttgac
     3481 ggcgggacgg tggccggtgt tttgaccgtc catatgcagg ccgcttgccc acgcgccgct
     3541 ttcggacgtg atttcgtaac gggttttgtg catgtcggtt tcaaattcta cgccgtcgaa
     3601 gacgaagaat tcgggttcgg ggccgaagta tgccgtgtcg ccgatgccgg aagatttcaa
     3661 ataggcttcg gcgcggcggg cgatggagcg cgggtcgcgg tcgtaaccct gaccgtcggc
     3721 agggtcgatg acgtcgcagg taatgacgac ggtaacatca tcataaaaag gatcgacgaa
     3781 ggctgtagac gcatcgggac gcaactgcat atcggaagcc tgaatgcctt tccagccgcc
     3841 gatagacgaa ccgtcaaacg cctgaccgtt ttcgaaccac tcttcggggt cttccaacac
     3901 gatgcgcgca ggcacggtaa agtggtgctg cttgcctttg gtatcggtaa agcgcaaatc
     3961 gacaaagcgg gcttcgcttt cttcaatcaa ttttacggcg tttttaatag acatttttca
     4021 gctcctggaa aagggaaata gcaaaatatg cggaacgcgg cagattagct caaagccagc
     4081 atgattctac cacgtccatg ccgtctgaaa ctggccctgc gtcaaattcc aagctgtaaa
     4141 atatagtttc agacggcaat attgtcaaca atatgcttcg gtttgcccgt tcccaagcag
     4201 aatgcccgcc cttttatccg aatgccgaca aaacagatgc cgtctgaaag cagttcagac
     4261 ggcatctgtt gtttggtttg aaaacggtca gcgaggatag ccgttgcaga caaatttgta
     4321 ctgagcctct ccaagcgtac cgggaataac ataattccat tcggcatagg atggtgtata
     4381 agaagcgata gagtttcccg atttggaata ccacgttgcc gtcaatatcc taaaacgttt
     4441 accactgcaa tccatttctt ccaacgtttt agctgtatta aaaaattttc cattgccata
     4501 cttttgcggc ttggcgaacc ttgtttcaaa ccatgcactg ttgtccgtac ggctgtctgc
     4561 atcaccaaac gtggcagtat tactatctac caatacccaa tccgccgcca ccgccggtgt
     4621 tgccaacccc aatgcaaata ctgccaagca caacatcttt ttcatgtccg accctctcgt
     4681 ctttgtcaac aaaataaagt taaattgtaa aaaaaaacga cttttttcaa gagaaaaata
     4741 ttccgtcatg ctatctgaca accgtttcag acggcatcgt ttccatctgt acgccgccgt
     4801 tataaaatag ccttcccgtc ttttggaaca cgaccatgac cgccctcccc cgttactccg
     4861 tttttggcaa ccccgttgca cacagtaaat cgccgcaaat ccatcagcaa tttgcccttc
     4921 aggaaggcgt tgacattgaa tacgaacgca tttgcgccga catcggcggt tttgcacagg
     4981 cggtttcgac attttttgaa acaggcggtt gcggggcaaa cgttaccgta ccgttcaaac
     5041 aggaagcgtt tcatctggcg gacgagcatt ccgaacgcgc attggcggca ggtgcggtca
     5101 atacgctgat tccgttgaaa aacggcaagc tgcgtggcga caacaccgac ggtatcggtt
     5161 tgaccaacga catcacgcag gtcaaaaata ttgccatcga gggcaaaacc attttgcttt
     5221 tgggcgcagg cggcgcggtg cgcggcgtga ttccggtttt gaaagaacac cgccctgccc
     5281 gtatcgtcat tgccaaccgt acccgcgcca aagccgagga attggcgcag cttttcggca
     5341 ttgaagccgt cccgatggcg gatgtgaacg gcggttttga tatcatcatc aacggcacgt
     5401 ccggcggtct aaacggtcag attcccgata ttccgcccga tatttttcaa aactgcgcgc
     5461 ttgcctacga tatggtgtac ggctgcgcgg caaaaccgtt tttagatttt gcacgacaat
     5521 cgggtgcgaa aaaaactgcc gacggactgg gtatgctagt cggtcaagcg gcggcttcct
     5581 acgccctctg gcgcggattt acgcccgata tccgccccgt tatcgaatac atgaaagcca
     5641 tgtaatatgt tccgcatcgt caaatggctg attgccctgc ccgtcggcat ctttatcttt
     5701 ttcaatgcct atgtgtacgg caacatcatt acctaccgcg ccgtcgcgcc ccatcggact
     5761 gcctttatgt cgatgcggat gaagcagttt gaacaggaag gtcgcgatgt cgcactggat
     5821 taccgctggg tgccctacaa ccgcatctcg gtcaacctga aaaaagccct gattgcttcc
     5881 gaagatgccc attttgccgg gcacggcggc ttcgattggg gcggcattca aaacgccatc
     5941 aggcgcaacc ggaacagcgg caaagtgaag gcgggcggct cgaccatcag ccagcagctt
     6001 gccaaaaacc tgtttttaaa cgaaagccgc agctatatcc gcaaaggcga agaagcggcg
     6061 attaccgcga tgatggaagc cgttaccgac aaagacagga tttttgaact gtatttaaac
     6121 tcaatcgaat ggcactacgg cgttttcggc gcggaagccg cgtcccggta tttttatcaa
     6181 atacccgccg ccaagctgac caaacagcag gcggcgaaac tgactgcccg cgtccccgcc
     6241 ccgctctact acgccgacca tccgaaaagc aaacggctcc gcaacaaaac caatatcgtg
     6301 ctcagacgca tgggttcggc agagttgcct gaaagcgaca cggactgagt gccgccgcaa
     6361 tataaaatgc cgtctgaaat atcattcaga cggcatatgc tttctgcctt tacccttttc
     6421 tctaaaacgc aacggggcgg tcattatcgc ttttgtcctt ctacataacg gtcagacaca
     6481 aaacgtgtcc gacacggaca acttcccaaa aacggcaggc aaaaaaaata accgcttata
     6541 agcggttttt tggtggccag aggcggaatc gaaccgccga cacacggatt ttcaatccgt
     6601 tgctctacca actgagctat ctagcctttg tctgtctcgt taagagatgc gtattaaacc
     6661 aaattacggg acgacatgca agcatatcgg gcaatattct ttgaaaacag gtttaagtca
     6721 atgttttaaa tttgaattaa tttatgtaaa aacaacataa atccgtattt ttgccgcctg
     6781 cccgacgata ttaggtcgcc cgtctgaaaa atattttcaa tatttgaagt tcttacccag
     6841 ataaacagaa cgaacctgtt cgtttccgac caaatcatca ggttttcccg atgccaacac
     6901 cgtgccgtct gaaataatgt aggcccgatc gcagatgctg agggtttcgc gtacgttgtg
     6961 gtcggtaatt aatacgccga taccgcgcga cttgagaaat ccgatgattt tttggatgtc
     7021 gatgacggcg atgggatcga cgccggcaaa aggctcgtcc aacaaaataa aatgcggttt
     7081 catggcaagt acgcgggcga tttcgacgcg tcggcgttcg ccgcccgaca aagatggggc
     7141 aggattattg cgcaaacgct cgatattcag gtcggcaagc agtttttcaa cttcgccgtc
     7201 gatgcggctt ttgtctttgg tactgatttc taaaatggcg cggatgtttt gttcgacggt
     7261 cattttacgg aaaatagagg cttcctgcgg taggtagccg acacccaggc gggcgcgttc
     7321 gtgtatgggc aggtgacgca attcctgccc gtccagcatc acgctgcccg catcggcggc
     7381 aatgagtcca acaatcatgt agaagctggt ggttttaccc gcaccgttgg gcccgagcag
     7441 gccgacgact tccccgcttt cgatttcaag ggagaagctt ttaacgactt ggcgtttttt
     7501 gaaacttttt tgcaggtttt gaacaacaag gcggctgacg tttgcgctca taaatatctc
     7561 ttcaatatct tcggtcggca aatgccgtcc gaaccaggtt tatgtttcag acggcatttt
     7621 gggattattc ggatttttgc gtactcgaag gctggataac gacgctgacc ctgccggatt
     7681 tggaagcgga ttttgcgccg gattttgtgc tgccgctgat ggtatagact tcggttttgg
     7741 tgttgtatgt aatcaccgca ccttcggcga catcgccgcc gcgctgtact ttggcattac
     7801 cggttaagac tacggtgctg cctgcagatg aataagcaac gttgtttgcc tgtccgcgca
     7861 ccgtgccttt gccgccgtcc aatgtctggc tgaagcggac tggcgaacct tccgccctca
     7921 cggattcgcc gcctttgccg ccgcgtgtaa cattgacgcg ggcggcggaa atattgagcg
     7981 taccctgtct gatgacgacg tttccgctga atgtggtgct ttggttggct tgatcgagcg
     8041 aaccttggtc ggcctcaatc tgaataggct gcctgctgtc gctttgaagg gcaaaagcgg
     8101 gggacgccga aaaaaatgct attaaaacaa atagcttaca tatcttttgt atcataaatc
     8161 gtggctttca ctttagatga gaagttcaac atgcctgttt tgtggtcgta agtcatgccg
     8221 cccgcctgac cgtgcgatgc accatattgg aaactgacag gcgtatcggt ttgggcatat
     8281 tgagattcgg tatcgacgtg cagcttttcg gcttcaactt tacccgcctg ccgtttgccg
     8341 tcagcggttt tggtcagcac aacgttgttt ttaaaaagaa cctgtttgtt ttcggtatgg
     8401 taaacggctt catcgctgcc gacttcgtac aacaacctgc cttcttggaa gaacacgaga
     8461 tgcggcgaat caaaatggat gtcgctgctt tcgggaaact gtttcgcgcc tttcgcgctc
     8521 aaatgttctt ttaagtatcc ctgttcgtca aaccgcctgc catccaagcc gtccattgtg
     8581 tattgcggtt cgtcgggatt gagcctgact tcttcaatct cgacttcgct gatgcgtccc
     8641 aaccatgccg acagaccgcc caaggcaacc gccaatatca atgggaacgc aattccgtac
     8701 cgccatctta ttttcatttg atgtactcgt tcaaagccgc gcccaaagtc ccttgcgcct
     8761 gcataatcag gtcgcacact tcgcgcaccg cgcccgcacc gccggggcgt ttggcaatat
     8821 aggcggcgtg ttgcagcgta aaccaatgcg cgtcgggaac ggcaaccggc aatccgcaac
     8881 gcaccatcac cggcaaatcg accacgtcgt cgccgacaaa ggcacactcg gcttcttcca
     8941 cgccgacctg agcgcgcagc tcttcatacg cggcgcgttt gtccgaaatg cctttgaagt
     9001 agtaatttat gcccaactgt ttgacgcgga tgccgacgga gggcgcgtcc cgacctgtga
     9061 taatcgcagt ctgcacgccg cttgcctgaa gcattttcag accgtgtccg tccagtgtgt
     9121 gaaacgattt gatttcttcg ccgttatcgc ggataaagat gcgcccgtcg gtcaaaacgc
     9181 cgtccacatc caggatcaac agtttgattt tggcggcgcg cgcctgtaat tcgggagaaa
     9241 ttgcctgcat gggatttcct tgttttcaga cggcatatct taccacaaat gccgtctgaa
     9301 acggctgcaa cgccttatac aatccgtgcc gccagcaggt cgtgcatatt cagcgcgccg
     9361 atcagcacgc catctgcatc ggtaaccaga agcccgttca catggtttgc ctgcatgact
     9421 ttcagggctt cggtggcgag acgttcggcg gagatggttt taggatgcgt atgcatgact
     9481 tcgtctatcg aaagaccggt aaaattgtcg cattcttgaa acaggcggcg caaatcgccg
     9541 tcggtgaata cgcctttcag acggccttgc ccgtccgtta ccgccaacat gcccagccct
     9601 ttttcactca tgctgacgat ggcttctttc aagggcgtgc cgagtcggac ggcaggcagg
     9661 ccgccgcctt tgtgcataat gtcggcaacg cgcaaaagta ggcgtttgcc gaggctgccg
     9721 gcaggatggc tcaaggcgaa atcgtcgggc gtgaacgcgc gtgcgcgcag caggacgacc
     9781 gccaacgcat cgcccaaagc catgacggcg gtggtgctgg tggtcggggc aagccccagc
     9841 gggcaggctt ctttggaaac cgacgccgtg atgtggatgt cggcatggcg cgccatggtt
     9901 gaatcggggc gggcggtgat gcagacaagc gtgatgtctt tgcgtttgag cgcggggatg
     9961 atggcggcga tttcgtcgct ttcgccggaa ttggaaatcg cgacgaccac gtcgttgtcc
    10021 acaatcatgc ccaaatcgcc gtgtgccgct tccgcagggt ggacaaaaaa cgcgggcgtg
    10081 ccggtcgagg ccatcgttgc cgccattttg cgcccgatat gtcccgactt gcccatgccc
    10141 gtgataacga ccctgccctt gcagtgcaac aacgcgtctg ccgcaaggac gaagttttcg
    10201 tccaattccg ttgcaatttc gcgcaagcct tcctcttcgg tgtgcaacac ttcgcgcgcc
    10261 cagtcgagat attttccgtt ttctgccatt gccatccgcc tttgctgtaa taaaactacc
    10321 caaaatttcc gaatcggggt agcataagcc tttgaaacat acacatccat ccaaaggaat
    10381 cagaaatgac tattttatcg gacgttaaag cattaggaca acaaatctgg ctggacaacc
    10441 tttcccgctc gctcgtgcaa agcggcgaat tggcgcaaat gttgaaacaa ggcgtgtgcg
    10501 gcgtaacttc caatcccgcc attttccaaa aagccttcgc cggcgatgcc ctgtacgccg
    10561 atgaagtcgc cgcgctcaaa cagcaagatc tgaccccgaa acaacgctac gaaaccatgg
    10621 cggttgccga tgtgcaagcc gcctgtgacg tgtgccttgc cgaacacgaa tccaccggcg
    10681 gcaaaaccgg tttcgtcagc ctcgaagttt cgcccgaatt gtccaaagac gcgcaaggca
    10741 cggtagaaga agcgcgccgc ctctacgccg ccatcgggtg caaaaacgcg atgattaaag
    10801 tgcctgccac cgacgcaggc atcgatgcgc tcgaaaccct cgtttcagac ggcatcagcg
    10861 taaacctgac cctgctgttc tcacgcgccc aaaccctcaa agcctacgcc gcctacgcgc
    10921 gcggcattgc caaacgcttg gcagccggac aaagcgttgc ccatatccac gtcgtcgcca
    10981 gcttcttcat ctcccgtgtg gacggcgcgc tggacacaac actgcccgac cacctcaaag
    11041 gcaaaatcgc catcgccctt gccaaagccg cctaccaaga ctgggcacaa tacttcggca
    11101 gcccggaatt tgccgcactg gaaacccaag gcgcaaaccg cgtgcagctt ttatgggcat
    11161 ctaccggcgt gaaaaacccg gcctatcccg acacactcta cgttgacagc ctgatcggcg
    11221 cgcacaccgt caacaccgtt cccgatgcca cgctcaaagc cttcatcgac cacggcacag
    11281 ccaaagctac gctgaccgaa ggcgcggacg aagcacaagc tcagctcgcc gaaaccgccg
    11341 cgctcggcat cgatgtcgaa accttggcgg cacgtttgca ggaagacggt ttgaaacagt
    11401 ttgaagaagc gtttgaaaaa ctgctcgcac cgttggttta aacttttcat ccccgatgcc
    11461 gtctgaaagg ctttcagacg gcatcgcccg tttgaccgga cacagtgcgg catatcaagg
    11521 attcacccta aaaatattaa tgggcaagaa gttaatgcac gacattaccc accaacacaa
    11581 aaggaaatag aatcatggca aaagcactcg aaatcatttc acccaatgaa atttattcag
    11641 atctgatttt taaggatccg gtacctcccc atacaatata tacagaattg atgaaactgg
    11701 ttagtagaaa tgcaagtaat gagagaatcg cagatagagc cttcgatttt ttctcgtccg
    11761 gccttatgga tggttcagct accgaagagc aatataatgc cctatatgat ttaaccttac
    11821 ttgaagaacc cgggatggaa ctgaataaag atgagataat ggctttgatt aatagtctta
    11881 aataaagggg ccgtaccgga tatgtacaca ggacgtttcg cccccagccc gaccgggctg
    11941 ctccacatcg gctcgctgct gaccgccgcc gcttcctatg ccgatgcacg ctcaaacggc
    12001 ggcaaatggc tggtccgcat ggaagacctc gatccgccgc gcgaaatgcc gggggcggca
    12061 agccatatcc tgcacacgct tgaggcattc ggattcgagt gggacggaga agtcgcctat
    12121 cagagccgcc gttacgccct gtatgaagaa acactatgcc gtctgcaaac cgccggactg
    12181 gtctatccct gccattgcag ccgcaaagac tggcaggctg cggcagtcca cggcgcagac
    12241 ggattcgtct ataacggacg ttgccgcaat ccgcagcaac gccctgcact gcaaggcaaa
    12301 cagcctgcgt ggcgcatccg cgtccccgac cgcgacatcg gcttttcaga cggcatcgtc
    12361 ggcggttacg cccaaaacct cgcccgcgac atcggcgatt tcgtcctgct tcgtgcagac
    12421 ggttactggg cataccagct cgccgtcgtt gccgacgatg ccgaacaggg cgttacccac
    12481 atcgtccgcg gacaagacct gctcgtttcc acgccgcgcc aaatctattt gcagcagtgt
    12541 ttgggcgttc cgacaccgca atatgcccac ctgccgctgc tgaccaacgc acaagggcag
    12601 aagtggtcga aacagacgct cgcccccgca ttggatttaa accgccgcga acaactcctc
    12661 cgccaagtgt tccgttacct caagctgccc gaagcaccgg aaaccgaccg ccctgccgaa
    12721 ctgctcgact gggcggtggc acactgggat atgggcaaag tgccgaaaca cgccattacc
    12781 accccctaaa caccgcccga caaacgcaca aatgccgtct gaagccttca gacggcattt
    12841 cacacataca gccccgccct attcgcgcgt atttgcccgc tcaacctctt tccacgcttc
    12901 gagaatcagg ctgccgtcgt tgtctttcaa gagcgttgcg tcggaaagca tacgccgcca
    12961 agtccgcgca cctttcaaac cgtgcatcag cccgaggctg tggcggacga tgtggcgcaa
    13021 gattgtgccg cgtccggctt ggatctgggc ttggctgtat gtgtagaggc actgcaccaa
    13081 atcggcgtat tcgatcgggc tgcgagtatc gccgtaaaac aatctgtccc attcgcgcat
    13141 caccatcggg ttgtggtacg cctcgcgccc gaccatcacg ccgtcaacgt gttgcaggtg
    13201 tccggcgatt gcttcgttgg tggtgatgcc gccgttgatg atgatttcca gcccgggaaa
    13261 ctcctgcttg aggcggtaaa cgtaatcgta tttcaacggg ggaacgtcgc ggttttcttt
    13321 gggggaaaga ccgtccagcc aagcgttgcg ggcgtggacg atgaaggttt tgcaggcggt
    13381 tttgtcgcgc agcgtgccga cgaaatcggc aacggtttgg tattcggtct gcctgtccac
    13441 accgatacgg tgtttgacgg taacgggaat accgaccgcg tcctgcatgg cgttgaggca
    13501 gtcggcaacc agcccgactt cgttcatcag acacgcgccg aacgagcctt tctgcacgcg
    13561 cggactgggg cagccgcagt tgaggttgac ctcgttgtaa ccgtatgcct cggcggcttt
    13621 ggcggctttc gccaaatcgg acggatcgct gccgcccagt tgcagggcga cgggctgctc
    13681 gccttcgttg aacatcaaaa agcggtcttt gtcgccgtaa acaatcgcgc cggcgttgac
    13741 catttcgctg tacagccaag tattgcgggt aatctggcgc gccatataac ggtagtgcct
    13801 gtccgtccag tccaacatcg gggcgacgga caggtggcgc gggggaaggg tgtgtgtatt
    13861 gtcgttcatt gtcgatattt tatcattgcg gattcaattt caatccggaa caaccttcat
    13921 ttttggggaa atccgcgtca tgaaagagtc cagcagtatg gttaccggcc cgtcgttgca
    13981 gagcgacacc tgcatatgcg tgcggaaacg ccctgtttcg acatgaatcc cgtgtccgcg
    14041 caacagttcc gccgttcgca ggtaaagctg ctgcgcctgt tctgcaggtg cggcttggga
    14101 aaacgaaggc cgccgcccgc ttgccgcatc ggcataaagt gtaaactgcg acaccagcag
    14161 caccgcgccg ccgacatctt tcaaagacag gttcaacttg cccgcttcgt cttcaaacac
    14221 gcgcaaatgg gcgattttgt cggcgatata gcgtgcatct ttttctgtgt cgctatgcgt
    14281 tacaccgagt agcacgacga atccgccgtc gattttgccg caggtttccg tgccggcttc
    14341 ggacacgaca tccacctttg cacctaccgt tttctgtatg accgcacgca taagccgtcc
    14401 tccttacctg aacgtgcaat gccgtctgaa aaggcttcag acggcatcgg tatcggaaat
    14461 gccattacgg tttgacaccg ttttcttcca aaagggcatc gattttcaag cgggcttttt
    14521 cctgtctcaa accctgctcc aattggtttc tgaccaactc gaaaggttgc gcgtcggggt
    14581 ttttcccgac cacgctgagt ttgaacagat aatagcgttc gcccaatttg accggattgc
    14641 gggtaacgtc gccccgattc atcgctgcaa actgcgaagc cagcggctcg ggaagctgct
    14701 gcgccataat gaaaccgtca aaagcctgct cgtcgttcgg ataacgcttc atcagccctt
    14761 caaaagacag ccctttgagc aggagctgct gcgcctgacg cgcctcctct tcggttgcga
    14821 agctgacctg ctgcaatttg atcatgcgga tttgccgctc ataaaactga cgcagtgcgc
    14881 tttcggaaac cgtttccgaa cgttccagaa aacggacgta ctcctcggca taaaaagacg
    14941 cttcggcgat tttaaagcgg ttttggacat ccttatcctt atccaaacct tccttcaatg
    15001 ccctgttttt caaaacttcc aaagtttgca gccggcggac ggcatcgttt cggattgcct
    15061 gcccgtccgg tttttgggac tgctccgcat gccggtctgc ctgctgcatg atctgcgcca
    15121 ccagcgtatc caccaaagcc gggtcgattt cgggtgcttt ggctgccgca aaacctgcca
    15181 acattgcagc aataactgcg gcagcggttt ttttctgttt catggtattc cctgtcctgc
    15241 gcggcggcaa aacgcctgtc tgaacgtctt gccgccatat cccgttttca gaattatttt
    15301 gcaggtttga tgtttgcctt gcccaacagt gcaccgacgg cacggtcaat ccgttccgcc
    15361 tgaaggttgc ccgcaatctg tcctttcatt tcatcaaaag aaggcacttt tacctcgcgg
    15421 ctgtcgttga cataataaac gccgtagaaa tcgccgtttt tcagcggcgt tgccgtaaat
    15481 tcgccttttt tcaagtcctt aattgcctga taaagcggcg gaacaccctg ttccaaatct
    15541 ttcagcggca catatccgac cggcgcaccg gtctgtttgg tacggtcgtt gagggaatat
    15601 tgtttcaaga cggcatcgaa accttttttc gccttcaagt cggcaaccgc tttttttgca
    15661 ttttcttcct tgtcggtcag gatttcgccc aactggactt cctgcgtacc tttgtaaaaa
    15721 ccgctgatat tgtcatatgc ggcttttact tcctgctcgg aaaccggttg ggttttggcg
    15781 atatgcaatg cgtatgcctc gccgttcaag ccatatttta ccgcctgcca aacggttttg
    15841 aaggacggtt tcttgtcgtc gcccgacttt ttcgcttcgg cacgcaattt ggcaagcgca
    15901 tttttaaact ctgccgaccg gtcgagtttc aggcgtttca cttcctgtgc gaccacggtg
    15961 ttgaccactt cgttttccag cagggattgg cgcagttgcg gcgtgtcttc ggcacggctg
    16021 ttttccgcac ggaatgcggc aacctgcgca tcaatgacgg aactgtcgat tttctgaccg
    16081 ttgacggttg ccagcgtttg ggcaaacagg ctgccggaac aggcaagcag tgcaacggaa
    16141 gtcaggattt ttgctttcat aatcttctct ctttaaattt taaattgaaa tgttcgggca
    16201 gacttcattc agtccgccgt atggaaatac tcgtcagggg tagccgcccg gatgccgagc
    16261 gcgtgaatca tgccgcctga aaacaaatct ttgagcagcg atttgaccgt tttctggcgg
    16321 ttcaggcggc ttacgccttc aaaacggccg ctgacgacca aaacggcata atgtccgccg
    16381 ccggtattgc ccgcgtgtcc tttgtgcaga tggctctcat cgccgatttc caacaccagc
    16441 ggatcgagcg tctgcaggcg ttcgcggatc aaatcgacgg ccggcattat ttgaacaccg
    16501 ctttaaacgg cttgatcagc acttcgctgt acacgcctgc atgaacatag ggatcgtctt
    16561 ccgcccacgc ctctgccgca tccaaagact cgaactgcgc cacaatcaaa ctgcccgaaa
    16621 cgcggttgga gtcctccggc aaaggattcg ggcctgccgt caacagccgg ccttccgact
    16681 tcagcgtctc cagccgtttg aggtgttcgg gacgtgccgc catacgcgct tcatacacat
    16741 tctccccgtc tgttgccagc aacataaaat attccacagt caatcctcct ttttcagaca
    16801 ggtactcaga taaataccct gaataataaa gaaaacaagc atcagtgcag tcgagccgaa
    16861 cattttatag ttgacccatt gcgactcgaa ccgggtaaac acaaaccagt tggcgatacc
    16921 cataaaaatc aggaaaccga cccacatata cgtcaatttc gcccatacgg catccggaag
    16981 ctgaatctcc ctgccgatac tcgccttcaa gccgttttta ccggcgaggt ggctgcccca
    17041 caggaacagc gcacccagcc aaaacaaaac gctcggcttc cacataatga agcggctgtc
    17101 gcccaaaaca atggttgcgc cgccgaatac gacaatcagc accagtccga cccactgcat
    17161 cgtatccagc tttttatatt tccaatacag aaaagccgcc tgaaccacac cggcaaccaa
    17221 ggcaaccgcc gtagcggcaa tcatattttt ggtaacggta taagtagcaa aaaacaagat
    17281 gacagacaaa aggtcgctga cgaatttcat atccaaatga gaaagcaaat caaataaacg
    17341 ctaatcatac aggcagaacc ctgtttttgc acctgcaaaa ccaacaaatt ttgttttgat
    17401 tgatgcaaat atgcacagat gtttttgaaa aaagatggag atatgtcata atttgtaaaa
    17461 acggcgaatg attgccgttt aaaatgtggc ggcggtcggt acattcacat attaaatgcc
    17521 cgccggccga ctgccccgcc gatgcccgat gatgacgaaa tttacagact gtacgcggtc
    17581 aaaccgtatt cagccgccaa cccacagggg atacatcttg aaaaacaaca gacaaatcaa
    17641 actgattgcc gcctccgtcg cagttgccgc atcctttcag gcacatgctg gactgggcgg
    17701 actgaatatc cagtccaacc ttgacgaacc cttttccggc agcattaccg taaccggcga
    17761 agaagccaaa gccctgctag gcggcggcag cgttaccgtt tccgaaaaag gcctgaccgc
    17821 caaagtccac aagttgggcg acaaagccgt cattgccgtt tcttccgaac aggcagtccg
    17881 cgatcccgtc ctggtattcc gcatcggcgc aggcgcacag gtacgcgaat acaccgccat
    17941 cctcgatcct gtcggctact cgcccaaaac caaatctgca ctttcagacg gcaagacaca
    18001 ccgcaaaacc gctccgacag cagagtccca agaaaatcaa aacgccaaag ccctccgcaa
    18061 aaccgataaa aaagacagcg cgaacgcagc cgtcaaaccg gcgtacaacg gcaaaaccca
    18121 taccgtccgc aaaggcgaaa cggtcaaaca gattgccgcc gccatccgtc cgaaacacct
    18181 gacgctcgaa caggttgccg atgcgctgct gaaggcaaac ccaaatgttt ccgcacacgg
    18241 cagactgcgt gcgggcagcg tgcttcacat tccgaatctg aacaggatca aagcggaaca
    18301 acccaaaccg caaacggcga aacccaaagc cgaaaccgca tccatgccgt ccgaaccgtc
    18361 caaacaggca acggtagaga aaccggttga aaaacctgaa gcaaaagttg ccgcgcccga
    18421 agcaaaagcg gaaaaaccgg ccgttcgacc cgaacctgta cccgctgcaa atactgccgc
    18481 atcggaaacc gctgccgaat ccgcccccca agaagccgcc gcttctgcca tcgacacgcc
    18541 gaccgacgaa accggtaacg ccgtttccga acctgtcgaa caggtttctg ccgaagaaga
    18601 aaccgaaagc ggactgtttg acggtctgtt cggcggttcg tacaccttgc tgcttgccgg
    18661 cggaggcgcg gcattaatcg ccctgctgct gcttttgcgc cttgcccaat ccaaacgcgc
    18721 gcgccgtacc gaagaatccg tccctgagga agagcctgac cttgacgacg cggcagacga
    18781 cggcatagaa atcacctttg ccgaagtcga aactccggca acgcccgaac ccgctccgaa
    18841 aaacgatgta aacgacacac ttgccttaga tggggaatct gaagaagagt tatcggcaaa
    18901 acaaacgttc gatgtcgaaa ccgatacgcc ttccaaccgc atcgacttgg atttcgacag
    18961 cctggcagcc gcgcaaaacg gcattttatc cggcgcactt acgcaggatg aagaaaccca
    19021 aaaacgcgcg gatgccgatt ggaacgccat cgaatccaca gacagcgtgt acgagcccga
    19081 gaccttcaac ccgtacaacc ctgtcgaaat cgtcatcgac acgcccgaac cggaatctgt
    19141 cgcccaaact gccgaaaaca aaccggaaac cgtcgatacc gatttctccg acaacctgcc
    19201 ctcaaacaac catatcggca cagaagaaac agcttccgca aaacctgcct caccctccgg
    19261 actggcaggc ttcctgaagg cttcctcgcc cgaaaccatc ttggaaaaaa cagttgccga
    19321 agtccaaaca ccggaagagt tgcacgattt cctgaaagtg tacgaaaccg atgccgtcgc
    19381 ggaaactgcg cctgaaacgc ccgatttcaa cgccgccgca gacgatttgt ccgcattgct
    19441 tcaacctgcc gaagcaccgt ccgttgagga aaatataacg gaaaccgttg ccgaaacacc
    19501 cgacttcaac gccaccgcag acgatttgtc cgcattactt caaccttcta aagtacctgc
    19561 cgttgaggaa aatgcagcgg aaaccgttgc cgatgatttg tccgcactgt tgcaacctgc
    19621 tgaagcaccg gccgttgagg aaaatgcagc ggaaatcact ttggaaacgc ctgattccaa
    19681 cacctctgag gcagacgctt tgcccgactt cctgaaagac ggcgaggagg aaacggtaga
    19741 ttggagcatc tacctctcgg aagaaaatat cccaaataat gcagatacca gtttcccttc
    19801 ggaatctgta ggttctgacg cgccttccga agcgaaatac gaccttgccg aaatgtatct
    19861 cgaaatcggc gaccgcgatg ccgctgccga gacagtgcag aaattgctgg aagaagcgga
    19921 aggcgacgta ctcaaacgtg cccaagcatt ggcgcaggaa ttgggtattt gattcccaac
    19981 tgccctttcg cagatcaagg atgccgtttc agacggcatc ttttttgcct tatcggtgta
    20041 acggataaag tttgaaccgg cacaggctca aacagcaggc cgacggcaac aaaatgccgt
    20101 ctgaaacccc taaaggcttc agacggcatt ggcggcggcg gtatcaggca gtttgatagg
    20161 caaccgaatc gtcaccgctt ttcttttgaa tgaactcgat tttgtatccg tcggggtctt
    20221 cgacgaaggc tatcacggtt gtgccgtgtt tcatcgggcc ggcttcgcgg acgacgtttc
    20281 cgccctgccg cttcacacgt tcgcaggctt cgtaggcatc gtccacttca atcgcgatgt
    20341 gtccgtaagc gttgcccaag tcgtatcgtt ccgtatccca gttgtgcgtc agttccaaaa
    20401 ccgtgctgtc ggtttcatcg ccgtaaccga cgaaggcaag ggtaaatctg ccttcgggat
    20461 agtcttttcg gcggagcagt ttcatgccca aaacgttttg gtagaaatca agggattttt
    20521 cgagattgcc cacgcggagc atagtatgga gtaagcgcat ttttcgtgtt cctcattggt
    20581 ggtggttaac ttcgatttag tggtggttaa acttcaattt tattcggggt aaacgtctgc
    20641 catttgttgc aggcgggaca gtgccagaaa aagacttggg atttgaagtg gcagttgcgg
    20701 caacggtaca tcacgctgcg ctgtagctgc cgtccgataa ccgaacgcat catgtcggca
    20761 tcggctttcc aagccggatt catatcgctg agtttcaaac cgagcaggcg gtacacgccg
    20821 ttaaggtcgg gcttgcggcg gacaagctcg acggcggttt gcgcggcttc tttctcgccc
    20881 ttaagcagca gggatttctc gtacacgaca ttgatcaggt caagttcggg aaacgtctgc
    20941 atatatcctg tcagacggtt caagccttct tcaggttttc cctgcgcggc ataggcttcg
    21001 taaagcttct cgccgaccat gctcaagtat gcatggtttt gctgctcgat ggcggcatag
    21061 gcttcgacgg cggcagggaa attgccttgt cggtgttcga tgtcgcccaa aatcatgttg
    21121 gcgcgggtgc attttttgtt ggcttcgagt gccttgccga cattgaaacg cgcgacatcg
    21181 aaattggact tgaacagcgc ggcttgggca agttcgcaat aaaactgggc aatttcaaac
    21241 tgataggtct gatcgtcatg gctgagcagc cgggcggttt caaccgcttt ttcccaatcc
    21301 ctgtcctgtt ggtagatatt gagcaggtgc tgtctggctt cacgcgccat ttcaccgtct
    21361 tgcagcccca aaaaaatctg ttcggcacga tcgaccaaac ccgcgctttg gtagttttgc
    21421 gccaattcaa acaggacgcg cgcgcgcttt tcgccgaccg tatcgggaga atcgagcatt
    21481 gtccggtgta tgttgatggc tttgtcgttt tcgccgcgct ggcggtaaag tttgccgagg
    21541 gtgaggttca aatcatacga ttgcggccgg ccgtcgacga cttccgccaa ctcccttgcc
    21601 gcgcgcccgc tgttgcggtc gaccaaagcg tccaagcttt tataaaatcc cgaagggatg
    21661 ctttttgcct gcttcaatac ggttttcata tccacgcggg cggcaaacca gcccatcgcg
    21721 aagaagacgg gcaaaaggat aatcggcagc aggataatcc acaattcgtt gtccatatcg
    21781 gctttcttaa ggctgtttgg tagattcggg cgcattttgc gccggtggtg cggtcagctc
    21841 cttccccgtc aaacgcgcat ttttctttac ttcggcacgc aacctgccgt tctcgccacg
    21901 taacgacaac aaccgtccga acaaggcaaa cattccaaaa ataataccga ctacaaatgc
    21961 gccgaacaat acgacaatca gcggcaaatc gaatttttgc cccggcaggt aggaaaaggt
    22021 aacggcatcc gtattaataa cggcaagcag caggaagagc agcaggataa tgattttgat
    22081 gaaggtatag ataagtttca tgtttgctcc gtaaataaaa acgccgcccg gacagcttcg
    22141 cactctgaac caagattgcg ctagtttaaa cgatttgcac ggtttcggat aggatgcggc
    22201 agcgtgttca gacggcatac ggagtatgcg attgccgaca attttaccaa atacatcgtt
    22261 cctttccatt tgaaaaataa cggattggac accgcatcga cagaaaaacc cgccgcgcac
    22321 ttgtcaaaac cctgtttgca ggcgtatctt tacaatcttc aaattcaaac cgttcattga
    22381 aacatatcag aataagaaag gctttacatc atgagcagac ccgtacccgc cgtattcggc
    22441 agcgtttttc acagtcaaat gcccgtcctc gcctaccgcg aaggcaaatg gcagccgacc
    22501 gaatggcaat cttcccaaga cctctccctc gcaccgggcg cgcacgccct gcactacggc
    22561 agcgaatgtt tcgagggact gaaagccttc cgtcaggcag acggcaaaat cgtactgttc
    22621 cgcccgaccg ccaacatcgc gcgtatgcgg caaagtgcgg acattttgca cctgccccgc
    22681 cccgaaaccg aagcttatct cgatgctttg gtcgaactgg tcaaacgtgc cgccgacgaa
    22741 attcccgatg caccttccgc gctgtacctg cgcccgacct taatcggtac cgatcccgtc
    22801 atcggcaagg ccggttctcc ttccgaaacc gctctgcttt atatcctcgc ctcccccgtc
    22861 ggcgactatt tcaaagtcgg ctcgcccgtc aaaattttgg tggaaaccga acacatccgc
    22921 tgcgccccgc atatgggacg cgtcaaatgc ggcggcaact acgcttccgc catgcactgg
    22981 gtgctgaagg cgaaagccga atacggcgca aatcaagtcc tcttctgccc gaacggcgac
    23041 gtgcaggaaa ccggcgcgtc caactttatc ctgattaacg gcgatgaaat cattaccaaa
    23101 ccgctgaccg acgagttttt gcacggcgta acccgcgatt ccgtactgac ggttgccaaa
    23161 gatttgggct ataccgtcag cgaacgtaat ttcacggttg acgagctcaa agctgcggta
    23221 gaaaacggtg cagaagcgat tctgaccggt acggcagccg tcatctcgcc cgttacttcc
    23281 ttcgtcatcg gcggcaaaga aatcgaagtg aagagccaag aacgcggcta tgccatccgt
    23341 aaggcgatta ccgacatcca gtatggtttg gcggaagaca aatacggctg gctggttgaa
    23401 gtgtgctgat gctttaaata aaaaaaatgc cgtctgaaac ccgtttggcg tttcagacgg
    23461 cattttcgcg ttcggaccat ttccgctgca cctgcagcaa gtcgggcatt tccctagaaa
    23521 tacgcttcag acggcaaacc gccgcccgaa accgatacgc ggtacggacg gcgcacggat
    23581 ttgaaaacgg cggattatcc ctcggtgctc aaggcattaa tgctgtaacc gccgtcaacg
    23641 taagtgattt cgccggtaat gccggacgac aggtcggaca gcaggaaggc ggcggtattg
    23701 ccgacttctt cgatggtaac gttgcggcgg agcggattgt gggcggcgac gtgtcccaag
    23761 agtttgccga aatcggcgat gccggaggcg gcaagcgttt tgatcgggcc tgcggaaatg
    23821 ccgttgcagc ggatgccttc tttgcccaga caggcggcgg taaaacggat gcccgcctca
    23881 aggctggctt ttgccatacc catcacgttg taattcggaa tcgcgcgcac cgcgcccaag
    23941 tagctcaggg caacgatggc ggagtttctg ccgcgcatca tcggacgggc ggcttttgcc
    24001 aatgcgggca ggctgtatgc ggaaatttcg tgtgcggtgt tgaacgcttc gcggctgatg
    24061 ctgtcgagga agtcgccgct caaggcttct ttcggcgcaa aaccgatgga atgcaccaaa
    24121 ccgtccaagc cgtcccaatg tttgcccaaa tcggcgaaca cttggttgat ttcgtcgtcg
    24181 ctggcgacat cgcagcggaa cacgagttcg gaatccaatt ccgccgccat tttgcggacg
    24241 cgctcttcca gtttgtccac aacgtaggta aacgccagtt ccgcgccttg ttcgcggcag
    24301 gctttggcga tgccgtaagc gatggaacgc tcggaaatca tgccggtaat cagaattttt
    24361 ttgccttgca gaaaacccat tttgtatcct tcaaatagtg ttcggttcgt tctaaaccgt
    24421 tgattatagc aaattgtccc tgtttctgtg ttttcacgtt gcagcatgca aacggcaatg
    24481 ccgtccgaag cggatttcag acggcatcgg acgtttcaaa tacggtttaa ggcatcagat
    24541 gccgcgcaac aattcgttca cgctggtttt cgcacgggtt tgcgcgtcca cgcgtttgac
    24601 gatgacggcg cagtaaaggc tgtggctgcc gtctttggaa ggcatactgc cggacacgac
    24661 gaccgaacct gtcggtacgc ggccttggta gatttcgccg gtggtgcggt cgaagatttt
    24721 ggtggattga ccgatgaaca cgcccatcga aatcacgctg ccttcttcga caatcacgcc
    24781 ctcaacgatt tcagaacgcg caccgatgaa gcagttgtct tcaatgatgg tgggggcggc
    24841 ctgcaggggt tcgagtacgc cgccgatacc gacgccgcca ctcaagtgca cgtttttacc
    24901 gatttgcgcg caagagccga cagtcgccca agtatcaacc atcgcgcctt cgtcgacgta
    24961 tgcgccgatg ttgacgtaag acggcatcag cacgacattt ttcgccacaa agctgccgcg
    25021 tcgggcaacc gcacccggaa cggcgcggaa gcctgcgttt ttgaactcgt cttcagacca
    25081 gtcggcaaac ttggtcggca ctttgtcgaa gtatttgttc acgccgtcgt tgaggacttc
    25141 gttgtcttgg atgcggaagg acagcaacac ggcttttttc gcccattcgt tgactttcca
    25201 ctcacccacg cccaagcgtt cggcaacgcg cagtttgccg gaatcgagtt ggcggatggt
    25261 ttccaacacg gcttctttga cttcgggagt aacggtggtc ggggtgatgt ccgcgcggtt
    25321 ttcaaaggcg gtttcgatga tgttttgcaa agacataatg tttccttatg tgagatgttt
    25381 cgtgggacgc ttgccggtat tttcgggcag tatgttcatt tgaaatgaat gcgctattgt
    25441 gccacgcaaa cgcatattcg tcagcaatac gcaggcggtt gccgaacatt ggcgtttcgg
    25501 aatcgggcgg gcggcaggta ttgccttttc cgcgcccgaa tcaatacaga aaggcggcag
    25561 tacttttatg ccgcgccgcc gcctttcaga cggcattcgc ggtaaaacgc catcagccct
    25621 tcggtcgagg catcgtgtac ggacgtgccg ccttccagtt cgccgatgat ggtttttgcc
    25681 aactgtttgc cgtattccac cccccactga tcgaaggggt tgacgttcca tatcgtgcct
    25741 tggacgaagg ttttgtgttc gtaagccgcc atcagcatac ccagattgta gggcgtgagg
    25801 cggtcgagca ggatgctgtt actggggcgg ttgccgggga actctttgtg cggcgcgagg
    25861 cgttcgcgtt ccgcttcggg caaatctgcc aattcggcgc gtgcttcgtc caaggttttg
    25921 cccttcatca gggcttccgc ttgggcaaag gcgttggcaa cggtaaaacg gctgcgtccg
    25981 tcctccacgc cctgcgccgt catcgggacg ataaagtcgc agggaatcag gcgcgtgcct
    26041 tgatgaagca gttggaaata ggcgtgctgg cagttgaccc cttcaccgcc gaacacgatg
    26101 ccgcccgttt tgcacacggc gggactgccg tctgaagcgc ggcttttgcc caaactctcc
    26161 atatcgagct ggttcagcca caccggcagc aggcgcaggt tgtggctgta cggaacggcg
    26221 gtctgcccgt ccgcgtgttg gaaattgtta taccacacgg caatcagtgc catcagaacg
    26281 ggaatgttgc ggcgcggcgg cgtgtggaaa aaatggctgt ccatcgcgtg cgcccccgcc
    26341 aacaactcgc ggaaacgcgc cccgccgacc gcaaccatca cgggcaaacc gacggacgac
    26401 cagacggaat agcgtccgcc cacccagtcg tacatcgcaa acacgcgttc cgccgcgata
    26461 ccgaaagccg cagctgccgc agtgtcggca gacaccgcgc aaaaatggca cgccgtttcg
    26521 gattccgaga accccgcacc gcgataccac gccttgactg cctgtgcatt gagcagggtt
    26581 tccggtgttt tgaaggactt gctggcaacg caaaacactg tcgtttcggg gttcagacgg
    26641 cataaaaccg catccaggca ggcaggatcg gcgttggcgg caaaatggac ggcgatatgc
    26701 cgtctgaacg gctcgagtgc ctgaacgcac attgccggcc cgaggtcgga tccgcctatg
    26761 ccgatgtgga caaaatccgt aatccgtttc ccagttatcc cctgatacga accgtcgtcc
    26821 aaactgtgtg caaactccaa cgcacgattt aactcgcggc ggatttcggg caacacgtcc
    26881 ctgccgtcca cataaacggc atccgcaccg tcgggcaggc gcaaagccgt atgcagcgcg
    26941 gcacgcccct cgctgccgtt gactttcgca cccgtccgca aagcacgcat tttcccttcc
    27001 aaatccgccg tctccgcaag acggcagagc agttgcagcg tatcttcgcc caaacggttt
    27061 ttgctgtaat cgaacaacat cccgtccaaa cgctcatgca tacgctcaaa acggtcgggt
    27121 tcgcaggcaa agcggtcgcg caaaaggaca tgacgcgtat cctgataatg gcgttcgagc
    27181 gcataccatg cacgggtaaa agcattcatc tgttttcctt gatttttcag aaccggatta
    27241 aaatgtagca gaatgtagtt taacaaacgg cagcggcttt ggcgaatctc cggaacaccg
    27301 cccgccgcgt ccaatagcac cttatttcca tatggcgaaa atatagtgaa ttaacaaaaa
    27361 tcaggacaag gcggcgagcc gcagacagta caaatagtat ggaaccgatt cacttggtgc
    27421 ttcagcacct tagagaatcg ttctctcttg agctaaggcg agccaacgct gtaccggttt
    27481 ttgttaattc actataccct ccggccgaca tttgacccgc aacaatatcc tgcaagattt
    27541 attgtgtacg cataaatgcc ggacagccgc ctaaataagg tataatcgca tccgattctg
    27601 tcccgtttgc cgcccgcagg cgggatgtcg gcggttttca tcttaccggg aacacgccgg
    27661 tactgttttt taacgatgtt tcttacattt tattccaatt actttacggg gctagaatat
    27721 ggctaaaaac ggaggatttt ctttgttcgc aaagaaagaa aaacgcttta tctttgaagg
    27781 caggcattcc gcctccgaca aactggtcaa cggcgaagta tccgcgttta ccgaagaaga
    27841 ggcgcgcaaa aaactggcaa aacgcggcat ccgcccgttg cagattaccc gtgtgaaaac
    27901 aagctccaag cgcaaaatca cacaagaaga catcaccgtt ttcacccgcc agctgtccac
    27961 gatgattaaa gcgggcctgc cgctgatgca ggcatttgaa atcgtggcgc gcggacacgg
    28021 caacccgtct atgacggaaa tgctgatgga aatccgaggc gaagtggaac agggcagctc
    28081 gttgagccgc gcattctcaa accacccgaa atatttcgac cgcttctact gcaacctggt
    28141 tgcggcaggc gaaacgggcg gcgtattgga aagcctgctg gacaaattgg caatttacaa
    28201 agaaaaaacc caggccatcc gcaaaaaggt aaaaaccgca ctgacctatc cggtatccgt
    28261 catcgccgtc gccatcggtt tggtattcgt gatgatgatt ttcgtactgc ccgcctttaa
    28321 agaagtttac gccaatatgg gcgcggagct tcccgcactg acccaaacag tgatggatat
    28381 gtccgacttt ttcgtctcat acggctggat ggtgctgatc gcactgggct ttgccatata
    28441 cggcttcctt aaattgaagg cgcgttcgat taaaatccaa cggcgtatgg atgccatact
    28501 gctgcgtatg ccgattttcg gagacattgt ccgcaaaggg acgattgccc gctggggcag
    28561 gacgacagcg acgctgattg cggcaggcgt gcctttggtc gatgtattgg actccactgc
    28621 cggcgcggcg ggcaatttaa tctatgaaga agccacccgg gaaatccgta cgcgcgtcat
    28681 ccaaggtttg tctatgactt cggggatgcg tgcgacggaa ctgttcccca atatgatgtt
    28741 gcagatgtct tccatcggcg aggaatcggg ttctttggac gatatgctca acaaagccgc
    28801 cgaattttac gaagacgagg tggacaatgc ggtcggcagg ctgtccgcta tgatggagcc
    28861 gatcattatc gtgattttag gcttggtcat cggcacgctt ctggtcgcca tgtatctgcc
    28921 gctgtttaat ttgggcaacg tggtcgcctg atttgccgca cagatccggc gcggattcgc
    28981 tctgcgccgg tttgtttttg ttttgaatac attgagaaca aaatatgtct gatttgtctg
    29041 tattgtcgcc gtttgccgtg cctttggcag cggtgttcgg gctgctggtc ggcagtttct
    29101 taaacgtcgt catttaccgc gtgccggtca tgatggaacg cggctggacg gtatttgcca
    29161 aaaaacattt aaacctgccg ctgaccgaaa aggaaagccg taccttcaac ctgatgaaac
    29221 cggattcctg ctgtcccaaa tgccgcgtgc cgatacgcgc gtggcagaac atcccgattg
    29281 tcagctacct gctcctgcgc ggcaaatgcg cttcctgcca aaccaaaatc agcatacgtt
    29341 atcccttaat cgagctgctg accggcgtat tattcgggct ggtcgcctgg caatacggct
    29401 ggtcttggat tacattgggc ggtttgatac tgaccgcgtt tctgatttcc ctgaccttta
    29461 tcgatgcgga cacccaatac ctgcccgact cgatgacact gcccttgatt tggctggggc
    29521 tgatatttaa tttggacggc ggcttcgtgc ctttgcagtc tgccgtttta ggtgcggttg
    29581 ccggctatgg ttcgatatgg cttttatgcg cggtatataa actgattaaa ggcgaaatcg
    29641 gtatgggcaa cggagatttc aaactgattg ccgcattggg cgcgtggctc ggcatatccg
    29701 cattgcccgt gctgattttt gtttcctcgc tgatcggttt ggtcgcggca atcgttatgc
    29761 gcgtcgccaa ggggcagcat tttgccttcg gccccgcact gacagtttcg ggctggataa
    29821 tttttacggc aaacgattcc gtatggcggg cggtcaactg gtggctgacc catccggtgc
    29881 tgtaagatga cggtatgggt cgggctgacc ggcggaatcg gcagcggcaa atcggcagcc
    29941 gcgcaatgtt ttgccgattt gggcgtgccg cgcatcgatg cggacgcggc ggcgcactcg
    30001 ctgacggctt cagacggcat cgccctgccg gaaatcaggc ggctgttcgg cgacaccgtt
    30061 tttgacacac agggtttgtt gcggcgcgac atattgcgta aagaagtctt tgcctcccca
    30121 tcgcgaaaag ccttgctcga atccgtgatg ttgccgctga ttttctcaga aatcaaaaaa
    30181 cagcaagaaa cctttaccga tgcggtttac ggcattgtcg aaattccgct gctgacggaa
    30241 aagcgtcaat ttgtcagcct gatacggcgt gtcctgacca taagcgcacc tttggaaaaa
    30301 cgtatcggca gggtgatggc ccgcagcggg ctgacgcgcg gcgaggtggc ggacatcatc
    30361 agccatcagg catccgaatc cgaacgcctg ctgcttgcag acgatgtgct gctcaatgac
    30421 ggcagcctca aaagcctgtg tgagaaaaca atgcgcctgc acgcgtttta ttcagggatt
    30481 ttcgcctcaa aaccaacaca aggaaaacac aatgactgaa tcgcggcaaa cacgccttca
    30541 agtcaaatgt ccgacctgtc aaacggcagt agtatggaaa ccggaaaacg cattccgccc
    30601 cttctgttcg caacgctgca aactgatcga cttgggcgga tgggcagacg ggaaatatac
    30661 ggtttccagc caaacggaaa gtttgccgga aatatccgaa cccgacatgg cataccgctg
    30721 accgccccgc cttcccggca aacaccctga aagtcaaatg ccgtctgaaa caaacacgct
    30781 tcagacggca ttttcattct caaacctaat cgttggtatt tgccgttacc tcttccaatg
    30841 aagtaatgcc ctgcataact ttcaaaatac cggcccggcg caaatccacc ataccctcct
    30901 tataggcaac gtccaaaata tccacttccg taccgttgtt cataatcaca cgctgcattt
    30961 cttcgctgat gggcataacc tcatacacgc ccgcacgccc cttataaccc tgcccccggc
    31021 aacggtcgca accgacggcg cggtaaagtt tccaatcttt tgcaaggtcc tcatcggtga
    31081 agccgacttc cttcaaagca gaggcagacg ggcgttccac ttcctgtttg cagctcgaac
    31141 acagcctgcg taaaagacgc tgcgccataa tcaggctgac cgaactggca atattaaacg
    31201 gcgcgacacc catattcagc atacgcgaca acgtcgccgg cgcattattg gtgtgcaggg
    31261 tggaaaacac catatgccct gtttgtgccg ccttaatcgc aatatcggca gtttccaaat
    31321 cacgaatctc accgaccata atgatgtccg ggtcctgacg caggaaagac ttcaaagcag
    31381 cggcaaaagt caggccctgc ttatcattga cgttaacctg attgatgccc ggcaggttaa
    31441 tctcggcagg gtcttccgcc gttgcaatat ttaccgactc cgtattcaaa atattcaaac
    31501 aggtatagag cgacaccgtc ttacccgaac ccgtcggacc ggttaccagc accatcccgt
    31561 agggacggtg aatcgcttcc aacaacaatt ttttctgaaa cggctcaaaa ccgagctggt
    31621 cgatgttcaa agacgcggca tcggaattca aaatccgcat cacgaccttt tcgccaaaca
    31681 gcgtcggcaa tgtgctgaca cggaaatcga caggcttgcc gcccttttga aaggtcagct
    31741 gcatcctgcc gtcctgcggt atccgttttt cggaaatgtc caaacgcgac attaccttaa
    31801 tccgggaagc aagctgcccc cttaccgcaa tgggcggctg aaccacctcg cggagctgcc
    31861 cgtccacacg gaaacggata cgggcattgt gttcgtaaaa ctcgaaatgg atgtccgatg
    31921 ccccgctgcg caaggcatcc gacaaagtct tatggataaa cctcggaaca gggccgtctt
    31981 ctgcctcctc gttgtcgata tacagggtgt ggctttcctc ttcctcctgc ccctccccaa
    32041 gctcctgaag cagcgatgtc gaacgcgaac ccacccaatc gagcaaaccc gccaactggt
    32101 catcctcgac aatgaccaac tcaacctcaa tccctgcggc agaaacggtt ttctgaattt
    32161 gcggcatctg tgtcggatcg gaaaccgcaa aaaatacttt gtcgccccga cggaaaaccg
    32221 gcacacagtg gaactccacc atctgctcct ccgtcaacac ccccatcagc accctgtggc
    32281 gcggataatg acgcaaatca agaatcgaat aactgaacac cctcgcaatc aatgccgcaa
    32341 gcgacttggg cgaaatgaca ccgtctgaaa acagcatcgg caacacttcc ttacccgcct
    32401 gcgactcatt gtagtaatgc tcggcctgct caacagtaac cacctggttt tgaaccagaa
    32461 tcctcagcaa acctacgctc atacgacctt atccccaaat ttattcattg ttatacctgt
    32521 acagctt
//
LOCUS       DAXIFD010000005        30297 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.005, whole genome shotgun sequence.
ACCESSION   DAXIFD010000005 DAXIFD010000000
VERSION     DAXIFD010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 30297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30297
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.005"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            126..1343
                     /locus_tag="ACFOCN_000192"
     CDS             126..1343
                     /locus_tag="ACFOCN_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HFC6969413.1"
                     /translation="MKHFPSKVLTTAILATFCSGALAATNDDDVKKAATVAIAAAYNN
                     GQEINGFKAGETIYDIDEDGTITKKDATAADVEADDFKGLGLKKVVTNLTKTVNENKQ
                     NVDAKVKAAESEIEKLTTKLADTDAALADTDAALDATTNALNKLGENITTFAEETKTN
                     IVKIDEKLEAVADTVDKHAEAFNDIADSLDETNTKADEAVKTANEAKQTAEETKQNVD
                     AKVKAAETAAGKAEAAAGTANTAADKAEAVAAKVTDIKADIATNKDNIAKKANSADVY
                     TREESDSKFVRIDGLNATTEKLDTRLASAEKSITEHGTRLNGLDRTVSDLRKETRQGL
                     AEQAALSGLFQPYNVGRFNVTAAVGGYKSESAVAIGTGFRFTENFAAKAGVAVGTSSG
                     SSAAYHVGVNYEW"
     gene            complement(1409..1747)
                     /locus_tag="ACFOCN_000193"
     CDS             complement(1409..1747)
                     /locus_tag="ACFOCN_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HFC6969414.1"
                     /translation="MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTE
                     IYRGAEYAVDFLPKVKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRI
                     RTGERSDAAV"
     gene            1898..5860
                     /gene="purL"
                     /locus_tag="ACFOCN_000194"
     CDS             1898..5860
                     /gene="purL"
                     /locus_tag="ACFOCN_000194"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HFC6969415.1"
                     /translation="MSVVLPLRGVTALSDFRVEKLLQKAAALGLPEVKLSSEFWYFAG
                     SEKALDAATVEKLQALLAAQSVEQTPKAREGLHLFLVTPRLGTISPWASKATNIAENC
                     GLAGIERIERGMAVWLEGALTDEQKQQWAALLHDRMTESVLPDFQTASKLFHHLESET
                     FSTVDVLGGGKEALVKANTEMGLALSADEIDYLVENYQALQRNPSDVELMMFAQANSE
                     HCRHKIFNADFILNGEKQPKSLFGMIRDTHNAHPEGTVVAYKDNSSVIEGAKIERFYP
                     NAAENQGYRFHEEDTHIIMKVETHNHPTAIAPFAGAATGAGGEIRDEGATGKGSRPKA
                     GLTGFTVSNLNIPGLKQPWEQDYGKPEHISSPLDIMIEGPIGGAAFNNEFGRPNLLGY
                     FRTFEEKFDGQVRGYHKPIMIAGGLGSIQAQQTHKDEIPEGALLIQLGGPGMLIGLGG
                     GAASSMDTGTNDASLDFNSVQRGNPEIERRAQEVIDRCWQLGDKNPIISIHDVGAGGL
                     SNAFPELVNDAGRGAVFELREVPLEEHGLTPLQIWCNESQERYVLSILEKDLDTFRAI
                     CERERCPFAVVGTATDDGHLKVRDDLFANNPIDLPLNVLLGKPPKTTRTDKTVTPSKK
                     PFHADDIDITEAAYRVLHLPAVAAKNFLITIGDRSVGGMTHRDQMVGKYQTPVADCAV
                     TMMGFNTYRGEAMSMGEKPTVALFDAPASGRMCVGEAITNIAAVNIGDIGNIKLSANW
                     MAACGNEGEDEKLYRTVEAVSKACQALDLSIPVGKDSLSMKTVWQDGEEKKSVVSPLS
                     LIISAFAPVQDVRKTVTPELKNVEDSVLLFVDLGFGKARMGGSAFGQVYNNMSGDAPD
                     LDDTGRLKAFYNVIQQLVAEDKLLAYHDRSDGGLFAVLVEMAFAGRCGLDIDLNLLLA
                     QTFITNHTALSQSLRTEEVKALAEWQETIARTLFNEELGAVIQVRKQDVADIINLFYQ
                     QQLHHNVFEIGTLTDENTLIIRDGQTHLISDNLIKLQQTWQETSHQIQRLRDNPACAD
                     SEFALIGDNDRSALFANLKFDVNEDIAAPFINSGAKPKIAILREQGVNGQIEMAAAFT
                     RAGFDAYDVHMSDLMAGRFRLADFKMLAACGGFSYGDVLGAGEGWAKSILFHPALRDQ
                     FAAFFADPDTLTLGVCNGCQMVSNLAEIIPGAEAWPKFKRNLSEQFEARLSMVHVPKS
                     ASLILNEMQGSSLPVVVSHGEGRADFALHGGNISADLGIALQYVDGQNQVTQTYPLNP
                     NGSPQGIAGVTNADGRVTIMMPHPERVYRAAQMSWKPEDWTELSGWYRLFAGARKALG
                     "
     gene            5955..6713
                     /gene="gloB"
                     /locus_tag="ACFOCN_000195"
     CDS             5955..6713
                     /gene="gloB"
                     /locus_tag="ACFOCN_000195"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HFC6969416.1"
                     /translation="MKITPVKALTDNYIWMIQHGNHAVCVDPSEPSPVLEFLVRNRLM
                     LAQTWVTHPHPDHEGGAAALWRGYMESPVYGESDIEAATHTVTAGTQFTFGDGQVTVW
                     ATPGHTDRHTSYLLETSDGIHVFCGDTLFSAGCGRVFTGTIEQLYDSFQRFNRLPENT
                     LFYPAHEYTAANLDFAAHIEPDNADIQTALKAAAHTPTLPVTLAHERRVNPFLRVDLP
                     HVRDRAEALSGKTLNSSLDTFVALRELKNQYRTK"
     gene            7027..11503
                     /locus_tag="ACFOCN_000196"
                     /pseudo
     CDS             7027..11503
                     /locus_tag="ACFOCN_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678286.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family peptidase"
     gene            11735..13189
                     /gene="mgtE"
                     /locus_tag="ACFOCN_000197"
     CDS             11735..13189
                     /gene="mgtE"
                     /locus_tag="ACFOCN_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HFC6969417.1"
                     /translation="MSIEHTPPTHDGETGQNHAERPSADFDRVHSLCEILEPAFEQIE
                     NGTPLEDAPLRDKLTELTVLLSELHPADVAAVLESLPPRERNIVWILVKPEDDGEVLL
                     EVSDAVRETLIESMDKDELLAAVDDLDADELAELADDLPHQVVYEALQTRDEEERAQV
                     KAAMSYEDNQVGAIMDFELVSIRADVACEVVLRYLRRFDSLPDHTDKIFVVDENDVLQ
                     GVLPIRKLLVADPEDLVENVMAKDVVRFRAEDDVEEAAQAFERYDLVTAPVVDENKKL
                     IGRVTVDEMVDVIREESEADMLNMAGLQEEEDLFAPVLDSVKNRWMWLAVNLCTAFLA
                     SRVIGAFEGSIEKIVALAALMPIVAGIGGNSGNQTITMIVRAMAMGQLTGMQAGRLLK
                     KEVGVALVNGIIWGTVMGAVSWLLYGSLGIGLVMIAAMTLNLLLAATVGVLIPVVMEK
                     FGRDPALGSSVLITAVTDSGGFLIFLGLATLFLL"
     gene            complement(13275..14183)
                     /gene="hslO"
                     /locus_tag="ACFOCN_000198"
     CDS             complement(13275..14183)
                     /gene="hslO"
                     /locus_tag="ACFOCN_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HFC6969418.1"
                     /translation="MNQTAINRADVRTRFIFDDMPVRGLHVRLENEWQHIVKQKNYPA
                     AIRRALGELLAAGVLLSGNLKNEGTLIVQVQGQGRLKMLVAEATSDRTVRATARWDEA
                     AEIGEDESLVDLLGEGGVFVLTLQPKDGEPWQGVVPLEGDGIAQMLMNYMKRSEQLDT
                     HIVLSASDEAAGGLLVQRLPEEVLDEEAWEHVSTLARTLTAGELAELDAQHVLYRLFH
                     ETPPRVFEPETFEFSCTCSRGKVSDMLLMLGGEEVGGVVVEQGSIEVDCDFCHSKYVF
                     DETDVNALFGEDVVGVAKGLPRHTVQ"
     gene            14428..15009
                     /locus_tag="ACFOCN_000199"
     CDS             14428..15009
                     /locus_tag="ACFOCN_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6969419.1"
                     /translation="MDSFFKPAVWAVLWLMFAVRPALADELTNLLSSREQILRQFAED
                     EQPVLPINRAPARRAGNADELIGNAMGLLGIAYRYGGTSISTGFDCSGFMQHIFKRAM
                     GINLPRTSAEQARMGTPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTG
                     KNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN"
     gene            15028..15246
                     /locus_tag="ACFOCN_000200"
     CDS             15028..15246
                     /locus_tag="ACFOCN_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969420.1"
                     /translation="MSMPEMPKWYDDDGQIVSCTEKVKVMSENMAELYQTAQDAFEDA
                     LLMGCGERQLRDYLLALIEGLENPYRKV"
     gene            15391..15735
                     /locus_tag="ACFOCN_000201"
     CDS             15391..15735
                     /locus_tag="ACFOCN_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HFC6969421.1"
                     /translation="MNIIRALLIILGCLAAGETAVFLAGIKLPDSIVGMGVLFALLQA
                     GWVKTSWLQQLTDALMANLTLFLVPPCVAVISYLDLIADDWFSILVSASASTLCVLLV
                     TGKVHRWIRSII"
     gene            15735..16427
                     /locus_tag="ACFOCN_000202"
     CDS             15735..16427
                     /locus_tag="ACFOCN_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HFC6969422.1"
                     /translation="MNEILRQPSVLLFLTLAVYALAIIVRTRTGNIFCNPVLVSTIVL
                     IAYLKILDIDYAVYHNAAQFIDFWLKPAVIVLAVPLYQNRRKIFNQWLPVIVSQLAGS
                     VTGIVTGMYFAKWLGAEREVVLSLASKSVTNPIAIEITRSIGGIPAITAATVIIAGLV
                     GQIAGYKMLKNTVVMPSSVGMSLGTASHAMGIAASLERSRRMAAYAGLGLTFNGVLTA
                     LIAPLLIPVLGF"
     gene            16494..17714
                     /gene="argJ"
                     /locus_tag="ACFOCN_000203"
     CDS             16494..17714
                     /gene="argJ"
                     /locus_tag="ACFOCN_000203"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HFC6969423.1"
                     /translation="MAVNLTEKTAEQLPDIDGIALYTAQAGVKKPGHTDLTLIAVAAG
                     STVGAVFTTNRFCAAPVHIAKSHLFDEDGVRALIINTGNANAGTGAQGRIDALAVCAA
                     AARQIGCKPNQVLPFSTGVILEPLPADKIIAALPKMQPAFWNEAARAIMTTDTVPKAA
                     SREGKVGDKHTVRATGIAKGSGMIHPNMATMLGFIATDAKVSQPVLQLMTQEIADETF
                     NTITVDGDTSTNDSFVIIATGKNSQSEIDNIADPRYAQLKELLCSLALELAQAIVRDG
                     EGATKFITVRVENAKTRDEARQAAYAVARSPLVKTAFFASDPNLGRLLAAIGYAGVVD
                     LDTDLVEMYLDDILVAEHGGRAASYTEAQGQAVMSKAEITVRIKLHRGQSAATVYTCD
                     LSHGYVSINADYRS"
     gene            17774..19183
                     /locus_tag="ACFOCN_000204"
     CDS             17774..19183
                     /locus_tag="ACFOCN_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HFC6969424.1"
                     /translation="MTSTFPRRLARKIRQTRRLSRKSIAFLFLLAGSALVALTALFFA
                     HLADFALELNAKLVQQYPWFAWVALPLGLPLIAWLTRKFAPFTAGSGIPQVIASLSLP
                     YGAQKTRLIRLGQTLLKIPLTFLGMLFGVSIGREGPSVQVGAAVMGAWGAWCKKHGLA
                     FKGMQENDLMAAGAAGGLAAAFNAPLAGVIFAIEELGRGIMLRWERQILLGVLASGFI
                     QVAIQGNNPYFSGFNGGVLEHIFLWVALSGLVCGAAGGLFGRLLYRGAAAFAPRKIRG
                     FIRNRPLLLAALMGLLLALLGTFYQGKTYGTGYHEAAQALHGIYEAPFGLAAAKWLAT
                     VFSYWAGVPGGIFTPSLTIGAVLGEHIAAIADISQGANIIVLICMAAFLAGATQSPIT
                     SAVVVMEMTGGQSLLFWMLIACIFASQVSRQFSPRPFYHASGMRFRQRVLQETAAQTG
                     NAPARPQTANSKTGMPSEN"
     gene            19372..20763
                     /gene="hrpA"
                     /locus_tag="ACFOCN_000205"
     CDS             19372..20763
                     /gene="hrpA"
                     /locus_tag="ACFOCN_000205"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HFC6969425.1"
                     /translation="MFPDFSQTLSKDRHFLQSAFKNPNKYGGLSKVEEKYRKSHEIFL
                     KRLAALPKPEFDNTLPVHEKLDEIKKTVAEHQVTIICGETGSGKTTQLPKICLELGRG
                     VAGLIGHTQPRRLAARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGIL
                     LAETQTDRYLAAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAER
                     FSRHFNGAPVLEVSGRTYPVEILYRPLTGKDEDDAEVELTDAIVDAADELARHGEGDI
                     LVFLPGEREIRETAEALRKSTLRRNDEILPLFARLSHAEQHKIFHPSGAKRRIVLATN
                     VAETSLTVPGIKYVIDTGLARVKRYSARAKVEQLHVEKISQAAARQRSGRCGRVSAGV
                     CIRLFSEEDFNSRPEFTDPEIVRSNLAAVILRMASLNLGDVAAFPFLEMPDSRYINDG
                     FQVLLELGAVEAV"
     gene            20864..21991
                     /locus_tag="ACFOCN_000206"
     CDS             20864..21991
                     /locus_tag="ACFOCN_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HFC6969426.1"
                     /translation="MKHLLIDFENVQPQNLDKLPTENTHIWLFIGVLHKMLPISLVQS
                     LLRFGERVHLVQLQKTGKNALDFYLSYYLGQITATDPNAQIGILSRDGGYDVLVEHIL
                     KNHQAKGIVRLANIDEVQHQKITTEPPSALLENTPQPETTLKPQQPLTSYFQAALTAL
                     RRPDAFRPCRLHNLRQNLRKHILSDLFKEKTDEECEITTANVINKLKAQNFISIDEQE
                     TVSYHLSDNDLLQRIQRHILSQRPKTYADFQAVVQNRADALHLTVGTNDIQSFARHLR
                     DQNLIRQNNGKIEYAPFTEPKPQPTPKQPKKTAWEPDEIIWKKVIAALSLKNRPNKTK
                     TLRNTIQALTKSNAQETDKLLQHLQDTQVLRIDGTKIVYIK"
     gene            22169..23746
                     /gene="lpt3"
                     /locus_tag="ACFOCN_000207"
     CDS             22169..23746
                     /gene="lpt3"
                     /locus_tag="ACFOCN_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase"
                     /protein_id="HFC6969427.1"
                     /translation="MMKKSLFVLFLYSSLLTASEIAYRFVFGIETLPAAKMAETFALT
                     FVIAALYLFARYKATRLLIAVFFAFSIIANNVHYAVYQSWMTGINYWLMLKEITEVGG
                     AGASMLDKLWLPALWGMLEVMLFCSLAKFRRKTHFSADILFAFLMLMIFVRSFDTKQE
                     HGISPKPTYSRIKANYFSFGYFVGRVLPYQLFDLSKIPVFKQSAPSKIGQGSVQNIVL
                     IMGESESAAHLKLFGYGRETSPFLTQLSQADFKPIVKQSYSAGFMTAVSLPSFFNVIP
                     HANGLEQISGGDTNMFRLAKEQGYETYFYSAQAENQMAILNLIGKKWIDHLIQPTQLG
                     YGNGDNMPDEKLLPLFDKINLQQGRHFIVLHQRGSHAPYGALLQPQDKVFGEADIVDK
                     YDNTIHKTDQMIQTVFEQLQKQPDGNWLFAYTSDHGQYVRQDIYNQGTVQPDSYLVPL
                     VLYSPDKAVQQAANQAFAPCEIAFHQQLSTFLIHTLGYDMPVSGCREGSVTGNLITGD
                     AGSLNIRDGKAEYVYPQ"
     gene            23812..27111
                     /locus_tag="ACFOCN_000208"
     CDS             23812..27111
                     /locus_tag="ACFOCN_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HFC6969428.1"
                     /translation="MQNMKNQVRGSGMDARSNPANVSDGLQNSSGHIGTNTRYRLTKL
                     GEQMARLPIDPKIARILLAAKKHDCMAEILVIASALSIQDPRERPLEARDAAAKAHER
                     FTDKQSDFLAYLNIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHHQLAQT
                     AIEMGLTTKEAAFRRLSEIKQLTSSENQGDQDLSAKRKQKQLDKKQHRAQIRAAKEAG
                     YEQIHRALLTGLIANVGMKSPDGNDYTGARGSRFHLFPASALFKAKPKWVMAAELVET
                     TKLYARDVAVIQPEWIEQEAPHLVRYHYFEPHWEQKRGEVVASERVTLYGLTVLPRRP
                     VPYGKVAPEEAREIFIRSALVAQECDLKADFFVHNKKLIKEITELEHKSRKQDVLVDD
                     EALFAFYNERLPEMAWKDAQGSVWGSEDSVRIIESDKAERSSENERNEFRKNKRNGSR
                     QNENHGNTVGWVENPTSAATAKTVGFDNPTYATQQPTPSPAREGRGEGKTVAAQTNFS
                     ATAANPLPQEREQSAAASAVSNDLHPANPQQTAPSPVGEGWGEGKTVATQTNFSATTA
                     NPLPNPLPQEGEQSAAASAVSNDPQPQKQPAPQKDRLKPLPLADIRTFQAWLKTAERE
                     NPRLLFLSRDDLMQHAAAHITEEQFPKFWQTADGKFELSYRFEPHHPLDGVTLTLPLT
                     VLNRISPAALEWLVPGMLREKIQLLIKALPKQIRRICVPVPEFITQFLSQNPDRNAPI
                     LPQLAQAIAKTAGDIRIFEQINQDEWAAFRLPEHCYFNLRIIDDGGQELAIGRDLIQI
                     QQQLGQAAAVTFRDNTQEFERDNVTTWDIGILPESIKFARGKQQLTGYLGLQKEKDGR
                     IALRLFDTIEAAEQAHRQGVIELMKLQLKEQVKDLNKGIQGFTQAAMLLKHINADTLR
                     DDLTQAVCDRAFIGEDELPRNEKAFKEQIKRARSRLPAVKEALSRYLQETAAAYAELN
                     SKLGKHPLTHLLRQRLQTLLAAGFATRTPWAQWPRLPIYLKAMTLRLEKYSSNPARDA
                     AREADIQELEQMWQEKTDSLIKQGLPISDGLAAFKWMIEELRVSLFAQELKTPYPVSV
                     KRLLKMWEDLN"
     gene            complement(27134..27556)
                     /locus_tag="ACFOCN_000209"
     CDS             complement(27134..27556)
                     /locus_tag="ACFOCN_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HFC6969429.1"
                     /translation="MTDIFTTSKRSFVMSKIHSKETKPEILVRKFLFSQGFRYRKNDK
                     RYAGKPDIVLPKYKTVVFIHGCFWYGHSCNKGHIPKSNTDFWLEKITKNCERDIKNET
                     ELEKIGFKVIVVWECELKNKAIGRERLNRLVREIKDAV"
     gene            complement(27560..29206)
                     /locus_tag="ACFOCN_000210"
     CDS             complement(27560..29206)
                     /locus_tag="ACFOCN_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02391 family protein"
                     /protein_id="HFC6969430.1"
                     /translation="MSEEKLKMSFEPTVIEHLGVKMYSHTVPAIAELIANAYDACATE
                     VEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLRIGRNRREEKQASPCGRIPTGKKGLG
                     KLALFGLGNKIEISTIQGNERVTFTLDYAEIKKSERIYQPEFQKESVEPNTENGTTIT
                     LTELTKKQGYPLDNYVEHLSRLFDFPAQDFKIKVSLNGSEPKIIDGNLKYDLVTPQFE
                     WEYQDLATNISSLSSKFEQYEYSGLIQGKFITTEKPLKNNMKGITLFANGRMVNMPEF
                     FTDSESSHFYSYLTGWLSIDFIDNDDEDLIATDRTSLDWKHPKTSKLRVFLGEIVRAI
                     GQDWRKRRKKEKDDEVKGESGVDIENWKNKLPEKEREPVEVILNRLEDSELTNKEQAE
                     VISALHSIIPEYPYYHWRHLHQDLHTACNDFYNEKKDYLSAAIEAVKVFENKVQKQTG
                     LHSIDGRELIEQAFGSKNSILLLTNNKTKAEQNLEDGLEQLACGTWTGFRNPVQHELR
                     ANLSPSIFNDKDALDLISLVSYLLRKVEQTKKRSKVVSSK"
     gene            complement(29220..30275)
                     /locus_tag="ACFOCN_000211"
     CDS             complement(29220..30275)
                     /locus_tag="ACFOCN_000211"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6969431.1"
                     /translation="MKNSKLKAVDFFCGGGGMSYGMQSAGIQVLAGIDYEPSCKETYE
                     ANINAKFIQADVFELQPETLEKELGLKKNDDDLILIGCSPCQYWSVIQTDKRKSEKSK
                     SLLLEFQRFVEYFNPGYVVVENVPGILSRMKESRLDNFIKLLEEKGFTVHFGIHNTAD
                     YGIPQSRKRFTLIANRITKEKLEPVKYSGKRLTVRDVLGMENGFPKIIAGHQDETDFM
                     HSCAGLSDINLKRLALIPKNGGNRLAFAHIPELQLECFIGKDNSFKDTFGRLWWDKPA
                     PTITTKFFSISNGRFAHPEEDRALSLREGATLQSFPRNYVFKAGSRDKIARLIGNAVP
                     PMYAEKIGRAIVDNIEC"
BASE COUNT         7778 a         9020 c         7081 g         6418 t
ORIGIN      
        1 gcgacaatgt attgtatata tgcctccttt catatatact ttaatatgta aacaaacttg
       61 gtggggataa aatacttaca aaagatttcc gccccatttt ttatccactc acaaaggtaa
      121 tgagcatgaa acactttcca tccaaagtac tgaccacagc catccttgcc actttctgta
      181 gcggcgcact ggcagccaca aacgacgacg atgttaaaaa agctgccact gtggccattg
      241 ctgctgccta caacaatggc caagaaatca acggtttcaa agctggagag accatctacg
      301 acattgatga agacggcaca attaccaaaa aagacgcaac tgcagccgat gttgaagccg
      361 acgactttaa aggtctgggt ctgaaaaaag tcgtgactaa cctgaccaaa accgtcaatg
      421 aaaacaaaca aaacgtcgat gccaaagtaa aagctgcaga atctgaaata gaaaagttaa
      481 caaccaagtt agcagacact gatgccgctt tagcagatac tgatgccgct ctggatgcaa
      541 ccaccaacgc cttgaataaa ttgggagaaa atataacgac atttgctgaa gagactaaga
      601 caaatatcgt aaaaattgat gaaaaattag aagccgtggc tgataccgtc gacaagcatg
      661 ccgaagcatt caacgatatc gccgattcat tggatgaaac caacactaag gcagacgaag
      721 ccgtcaaaac cgccaatgaa gccaaacaga cggccgaaga aaccaaacaa aacgtcgatg
      781 ccaaagtaaa agctgcagaa actgcagcag gcaaagccga agctgccgct ggcacagcta
      841 atactgcagc cgacaaggcc gaagctgtcg ctgcaaaagt taccgacatc aaagctgata
      901 tcgctacgaa caaagataat attgctaaaa aagcaaacag tgccgacgtg tacaccagag
      961 aagagtctga cagcaaattt gtcagaattg atggtctgaa cgctactacc gaaaaattgg
     1021 acacacgctt ggcttctgcc gaaaaatcca ttaccgaaca cggtacgcgc ctgaacggtt
     1081 tggatagaac agtgtcagac ctgcgtaaag aaacccgcca aggccttgca gaacaagccg
     1141 cgctctccgg tctgttccaa ccttacaacg tgggtcggtt caatgtaacg gctgcagtcg
     1201 gcggctacaa atccgaatcg gcagtcgcca tcggtaccgg cttccgcttt accgaaaact
     1261 ttgccgccaa agcaggcgtg gcagtcggca cttcgtccgg ttcttccgca gcctaccatg
     1321 tcggcgtcaa ttacgagtgg taagcagcat ctcccgataa agaaaccgca gccctgcaag
     1381 gctgcggttt ttattttcta tccggccgtc aaaccgccgc gtccgaacgt tcgcccgtgc
     1441 ggatacggat tgcctcctcg accggcagca caaaaatctt gccgtcgccg atttttcccg
     1501 aacgcgccac ctcgacaatc acgtcaatcg cgcgttccac agcatcatcc gccaacacca
     1561 gctcgatttt gaccttgggc aggaaatcga cagcgtattc cgcgccccgg taaatctccg
     1621 tatgcccctt ctgcctgccg aaccctttga cctcgctgac ggtcataccc gtaatgccga
     1681 tttccgtcaa cgcctcgcgc acgtcgtcga gtttgaacgg tttgacaatc gcctcgattt
     1741 ttttcataaa atttcctttg aacaaacaat acaaacacat ccgaaaaacg ggaacctccc
     1801 gtcagattgt caacatttta agccaaaata cccaagcaat acagccccgt tgcgcgtata
     1861 atgacagatt ttccaaccgc atttgagagc cgaatccatg tctgtcgttt tgcccttgcg
     1921 cggcgttacc gccctttccg atttccgtgt cgaaaaactc ttgcaaaaag ccgccgcact
     1981 cggactgccc gaagtcaaat taagcagcga attttggtat ttcgccggca gcgagaaagc
     2041 attggatgcc gcgactgtcg aaaaactgca agccttgttg gcggcgcaaa gcgttgaaca
     2101 aacgccaaaa gcgcgcgagg gcttgcattt gtttttggta acgccccgtt tgggtacgat
     2161 ttcgccgtgg gcttccaagg cgaccaatat cgcggaaaac tgcggtttgg caggcatcga
     2221 gcgcatcgag cgcggcatgg cggtgtggct ggaaggtgcg cttaccgatg aacagaaaca
     2281 gcaatgggcg gcgttgctgc acgaccgcat gaccgaatcc gtgctgcccg attttcagac
     2341 ggcatccaaa ttattccacc atctcgaatc cgaaaccttt tccaccgttg atgttttagg
     2401 cggcggtaaa gaggctttgg tcaaagccaa taccgaaatg ggtttggcac tctccgccga
     2461 cgaaatcgat tatctggttg aaaactatca ggctttgcaa cgcaatccgt ccgatgtgga
     2521 gctgatgatg ttcgcgcagg caaacagcga acactgccgc cacaaaatct tcaacgccga
     2581 cttcatcctc aacggcgaaa aacaaccgaa atcccttttc ggcatgatac gcgacacgca
     2641 caacgcgcat cccgaaggca cggtcgtcgc ttataaagac aattcgtccg tgatcgaagg
     2701 cgcgaaaatc gagcgtttct atccgaatgc ggcggaaaac caaggctacc gtttccacga
     2761 ggaagacacg catatcatca tgaaagtgga aacgcacaac cacccgaccg ccatcgcgcc
     2821 gtttgcaggc gcggcaacgg gcgcgggcgg cgaaatccgc gacgaaggcg caacgggcaa
     2881 aggttcgcgt ccgaaagcag gcttgaccgg ctttaccgtg tccaacctca acatccccgg
     2941 cctcaaacag ccgtgggaac aagattacgg caagccggaa catatttcct cgccgctgga
     3001 catcatgatt gaaggcccga tcggcggcgc ggcgttcaac aacgaattcg gccgccccaa
     3061 cctcttgggc tacttccgca cttttgaaga aaaatttgac ggtcaggttc gcggctacca
     3121 caaaccgatt atgattgccg gcggcttggg cagcattcag gcgcagcaga cgcataaaga
     3181 cgaaatcccc gaaggcgcgt tgctgatcca actgggcggc ccgggcatgc ttatcggctt
     3241 gggcggcggc gcggcttctt cgatggatac cggcacgaac gacgcttctt tagacttcaa
     3301 ctccgtacaa cgcggcaacc ccgaaatcga acgccgcgcg caggaagtca tcgaccgctg
     3361 ctggcagctc ggcgacaaaa acccgattat ctccatccac gacgtgggcg caggaggttt
     3421 gtccaacgcc ttccccgaac tggtcaacga tgccggacgc ggcgcggtat tcgagctgcg
     3481 cgaagtgccg ttggaagaac acggtttaac gcctttgcaa atctggtgca acgaatcgca
     3541 agagcgttat gtgttgtcga ttttggaaaa agatttggat accttccgcg ccatctgcga
     3601 acgcgaacgc tgcccgtttg ccgtggtcgg tacagcgacc gacgacggtc atttgaaagt
     3661 gcgcgacgat ttgttcgcca acaaccccat cgatttgccg ttgaacgtct tgctcggcaa
     3721 accgcccaaa accacgcgta ccgacaaaac agttacgcca tctaaaaaac cgtttcacgc
     3781 cgacgatatc gacatcaccg aagccgccta ccgcgttttg cacctgcctg ccgtagccgc
     3841 caaaaacttc ctgattacca tcggcgaccg cagcgtcggc ggcatgaccc accgcgacca
     3901 aatggtcggc aaataccaaa cccccgtagc cgactgcgcc gttaccatga tgggcttcaa
     3961 tacctatcgc ggcgaagcaa tgtctatggg cgaaaaaccg accgtcgccc tgtttgacgc
     4021 gcctgcttcg ggcagaatgt gcgtcggcga agccatcacc aacatcgcgg cggtcaacat
     4081 cggcgacatc ggcaacatca agctctccgc caactggatg gcggcgtgcg gcaacgaagg
     4141 cgaagacgaa aaactctacc gcaccgtcga agcggtttcc aaagcctgtc aggcattgga
     4201 tttgagcatt cccgtgggca aagacagcct gtcgatgaaa accgtatggc aggatggcga
     4261 agagaaaaaa tccgtcgttt cgccgttgag cctgattatc tccgcgttcg cgccggttca
     4321 agacgtacgc aaaaccgtta cgcccgaatt gaaaaacgtc gaggacagcg tattgctgtt
     4381 tgtcgatttg ggcttcggca aagcgcgtat gggcggctct gcattcggtc aggtatacaa
     4441 caacatgagc ggcgacgcgc ccgatttgga cgacacaggc cgtctgaaag cgttttacaa
     4501 cgtgattcaa cagcttgtcg ccgaagacaa actcttggca taccacgacc gcagcgacgg
     4561 cggcttgttt gccgttttgg tagaaatggc gtttgcaggg cggtgcggct tggatataga
     4621 tttaaattta ttgcttgcac aaacatttat taccaaccat accgctctgt ctcaatcatt
     4681 gcggactgaa gaggtaaaag cgttggctga atggcaagaa accattgccc gcacattatt
     4741 taatgaagag ttgggtgctg ttatccaagt tagaaaacaa gatgttgccg atattatcaa
     4801 tttattctat caacaacagc tgcatcataa tgtctttgaa atcggtacgt taactgatga
     4861 gaacacgtta atcatccgcg acgggcaaac gcaccttatt tctgacaacc taatcaaact
     4921 gcaacaaacc tggcaagaaa ccagccatca aatccaacgc ctgcgcgaca accctgcctg
     4981 cgccgacagc gagtttgccc tgattggcga caacgaccgc agcgcattgt ttgccaacct
     5041 gaaattcgac gtgaacgaag acatcgccgc gccgtttatc aacagcggcg cgaaacccaa
     5101 aatcgccatc ctgcgcgaac agggcgtgaa cgggcaaatc gaaatggccg ccgccttcac
     5161 ccgcgccgga ttcgatgctt acgacgtgca tatgtccgac ctgatggcag gccgcttccg
     5221 ccttgccgac ttcaaaatgc tggcggcgtg cggcggcttc agctacggcg acgtactcgg
     5281 cgcgggcgaa ggctgggcga aatccatcct gttccaccct gccttgcgcg accaatttgc
     5341 cgccttcttt gccgatccgg acacgctgac attgggcgtg tgcaacggct gccagatggt
     5401 cagcaacctc gccgagatta tcccgggtgc agaggcatgg cctaaattca aacgcaacct
     5461 gagcgaacag tttgaagcac gcctgagcat ggttcacgtt ccgaaatcag cgtcgctgat
     5521 tctgaacgaa atgcaaggct ccagcctgcc tgtcgtggtc agccacggcg aaggccgcgc
     5581 cgacttcgcg cttcacggcg gcaatatttc cgccgatttg ggcatcgcgc tgcaatatgt
     5641 ggacggtcaa aaccaagtga cccaaaccta cccgctcaac cccaacggct cgccgcaagg
     5701 catcgccggc gttaccaacg ccgacggccg cgtgaccatc atgatgccgc atccggaacg
     5761 cgtgtaccgt gccgcacaaa tgagctggaa accagaagac tggacggaat tgtccggctg
     5821 gtaccgcctc tttgccggcg cacgtaaagc cttgggctaa ccgccctact caaaccaatg
     5881 ccgtctgaag aatatttcag acggcgttcc ggcataccat cctttaaacg gtatccgtcc
     5941 accgaggaac actcatgaaa atcacccccg tcaaagccct aaccgacaac tacatctgga
     6001 tgatacagca cggcaaccat gccgtctgcg tcgacccttc cgaaccctcg cccgtcttgg
     6061 aattcctcgt ccgcaaccgc ctcatgcttg cccaaacatg ggtaactcac ccccaccccg
     6121 accacgaggg cggtgcggcg gcactctggc gcggctacat ggaatcgccc gtttacggcg
     6181 aatccgacat cgaagcagca acccacaccg taaccgccgg cacccaattc accttcggcg
     6241 acggacaggt taccgtttgg gcaacacccg gccacacaga ccgccacacc agctaccttc
     6301 tcgaaacttc agacggcata cacgttttct gcggcgacac cctgttttcc gccggctgcg
     6361 gacgcgtgtt taccggcaca atcgaacagc tttacgacag cttccaacgc ttcaaccgcc
     6421 tgcctgaaaa caccctgttc tacccggcac acgaatacac cgccgccaac ctggattttg
     6481 ccgcccatat cgagccggac aacgccgaca ttcagacggc actgaaagcg gcggcgcata
     6541 cgcctaccct gcccgttacc ctcgcgcacg aacgccgcgt caatccgttt ttgcgcgtcg
     6601 acctgccgca cgtcagagac cgcgccgagg cattgagcgg gaaaacgtta aacagcagcc
     6661 tcgatacctt tgtcgcgctg cgtgaactta aaaaccaata ccggacgaaa taaaacaacg
     6721 ggaaaacgca gccattccta ggatttttat taaaatctta aataaaatca tacaatcatc
     6781 gccaatagac gaaaggacac cgttgcctta taatcaaaca aaaacaaaat atataatata
     6841 gtggattgaa tttaaatcag gacaaggcga cgaagccgca gatagtacgg caaggcgagg
     6901 caacgctgta ctggtttttg ttaatccact atattgttaa tccactatat aaatccagca
     6961 caaaacggga tcggtgattc ttgtccgcaa gaatcgttga ttttctctat tacacggata
     7021 atcatcatgc gcttcacaca caccacccca ttttgttccg tattgtccac cctcggtctt
     7081 tttgccgttt cccctgctta ctcatccatt gtccgcaacg atgtcgatta ccaatatttt
     7141 cgcgactttg ccgaaaataa aggcgcgttc gccgtaggtg caagcaatat ttccatccaa
     7201 gacaagcaag gcaaaatatt aggcagggtt ctcaacggca tccccatgcc cgacttccga
     7261 gtcagcaacc ggcaaaccgc catcgccacc ctgattcacc cccaatacgt caacagtgtc
     7321 aaacacaacg tcggctacgg ttccatacaa ttcggcaacg acacccaaaa tccagaagaa
     7381 caagcctata cctaccgcct cgtatcacgc aacccgcacc cggactacga ctaccacctt
     7441 ccccgcctca acaaactggt taccgaaatc tcacctgccg cactcagcag cgtacccttg
     7501 cttggaaacg gccagccaaa ggccaatgcc tacctcgata ccgaccgctt cccctacttt
     7561 gtacgactcg gctcaggcac gcaacaagtc cgcaaagcag acggcacgcg tacacgaacc
     7621 gccccggcat accaatacct gaccggcggc acgccgctga aagtattggg gttccaaaac
     7681 cacggcttac tcgtcggcgg cagcctgacc gaccaacccc ttaacaccta cgcaatcgcc
     7741 ggagacagcg gttcccccct gtttgccttc gacaagcatg aaaaccgctg ggtgcttgcg
     7801 ggcgtactca gcacctacgc cggcttcgat aatttcttca acaaatacat cgtcacgcaa
     7861 cccgaattca tccgttccac catccgccaa tacgaaaccc ggctggatgt cgggctgacc
     7921 accaacgaac tcatatggcg cgacaacggt aatggcgaca gcaccctgca agggctcaac
     7981 gaacgcatca ccctgcccat tgcaaaccct tcgcttgccc cacaaaacga cagcaggcac
     8041 atgccgtctg aagatgccgg caaaacgctc atcctatcca gcaggttcga caacaaaaca
     8101 ctgatgctgg cagacaatat caaccaaggc gcaggcgcat tgcagttcga cagcaacttc
     8161 accgtcgtcg gtaaaaacca cacatggcaa ggtgcaggcg ttatcgtagc cgacggcaaa
     8221 cgcgtcttct ggcaagtcag caaccccaaa ggcgaccggc tctccaaact gggcgcaggc
     8281 acgcttatcg ccaacggaca aggcatcaac cagggcgaca tcagcatcgg ggaaggcact
     8341 gtcgtactcg cccaaaaagc tgcttcagac ggcagcaaac aagcattcaa ccaagtcggc
     8401 atcaccagcg gcaggggtac ggccgtcctc gccgacagcc agcaaatcaa atccgaaaac
     8461 ctctatttcg gcttcagggg cggacggctc gacctcaacg gcaacaacct tgcctttacc
     8521 catatccgcc atgcggacgg cggcgcgcag atcgtcaacc acaaccctga ccaagccgcg
     8581 acactgacgc tgaccggcaa ccccgtcctc agtcctgagc atgtcgagtg ggtgcaatgg
     8641 ggcaaccgtc cgcaaggcaa cgcggcggtt tacgaataca tcaacccgca ccgcaaccgt
     8701 cggaccgact acttcatact caaacccggc ggcaacccgc gcgaattttt cccgttaaat
     8761 atggaaaact caacaagctg gcaatttatc ggcaacaaca ggcaacaggc cgccaaacaa
     8821 gtcgcccaag ccgaaaatgc ccgccccgac ctaattacct tcggcggata cttgggtgag
     8881 aacgcgcaaa cgggcaaagc cgcaccgagt tacagcaaaa ccaatatcga atgggtgaat
     8941 ggtccaaaca ccccacacaa gccctcgccc tatacgaata cgccaacccg cacaggggca
     9001 ggcgtaccga cgattaccgc ctcaaagaag gcggcaaccc cggcgcctac ttcccatgga
     9061 atgcctacag cacccaagac tgggaatttc tcggacatga ccggcgaagc agccatagaa
     9121 aaaaaccgcc atatcgcaaa tgccgccgta tacggccggc ccgaataccg ttacaacggc
     9181 gcactcaacc tgcactatcg tcccaaacgc accgacagca cgctgttgct caacggcggc
     9241 atgaacctta acggggaagt cttgattgag ggcggcaata tgattgtgtc aggcaggccc
     9301 gtaccccatg cctacgacca ccaggccaaa cgcgaacccg ttcttgaaaa cgaatggacc
     9361 gacggcagct tcaaggctgc acggttcacc ctacgaaacc atgcccgact gacagcaggg
     9421 cgcaataccg cgcatctgga cggcgacata accgcataca atctgtccgg catcgacctc
     9481 ggctttatcc aaggcaaaac accggaatgc taccgctcct accatagcgg cagcacccac
     9541 tgcacaccca acgccgtttt aaaagccgaa aactatcgtg cactacctgt aacgcaagta
     9601 cgcggcgaca ttacccttaa cgaccgttca gagctccgcc tgggcaaagc acacctgtac
     9661 ggcagcatcc gtgccggcaa agacaccgca gtccgcatgg aagcagacag caactggaca
     9721 ctttcccagt ccagccacac cggcgcactg acgcttgacg gcgcacaaat taccctgaac
     9781 cccgatttcg ccaataatac acacaacaac cgcttcaaca cactgaccgt caacggcaca
     9841 cttgacgggt tcggcacatt ccgattcctg accggcatcg tccgaaaaca aaatgccccc
     9901 ccccctcaaa ctggaagggg acagccgcgg cgcattccaa atccacgtca aaaacaccgg
     9961 acaagaacct caaacaaccg aatcgcttgc acttgtgagc ctcaatccga aacacagcca
    10021 ccaagcccga ttcaccctcc aaaacggcta tgccgatttg ggtgcctacc gctacatcct
    10081 ccgcaaaaac aacaacggat acagcctgta caacccgctc aaagaggccg aacttcaaat
    10141 tgaagccacg cgtgcggaac atgagcgcaa ccaacaggca tacaaccaat tacaggcaac
    10201 cgacatcagc agacaggttc aacatgactc tgacgcgacc aggtaggcac tacaggcctg
    10261 gcagaacagt caaaccgaac ttgcccgcat cgacagccaa gtccaatatc tgtccgccca
    10321 attgaaacag acagacccgc tgaccggcat tctgacgcgt gcccaaaacc tgtgtgccgc
    10381 acaaggatac agtgtcgata tctgccgtca ggttgccaaa gccgccgaca cgaacgacct
    10441 gacactcttc gaaaccgaac tggatacgta tatagaacgt gtagaaatgg ccgaatccga
    10501 acttgacaaa gcacggcaag gcggcgatgc gcaagccgtc gaaacagccc ggcacgccta
    10561 cctgaacgca ctcaaccgtc tgtcccgaca aatccacagt ttgaaaaccg gcgttgccgg
    10621 catccgtatg ccgaacctgg ccgaactgat cagccggtcg gccaacaccg ccgtttccga
    10681 acaggccgcc tacaataccg gccggcaaca ggcgggacgc cgcatcgacc gccaccttac
    10741 cgatccgcag cagcaaaaca tctggctgga aaccggtacg caacaaaccg actaccatag
    10801 cggcacacac cgtccctacc aacaaactac caactatgca catatcggca tccaaaccgg
    10861 catcaccgac cgtctcagtg tcggtacgat tttaaccgat gagcgcacaa acaaccgttt
    10921 tgatgaaggc gtatccgccc gaaaccgcag caacggcgca catctgttcg tcaaagggga
    10981 aaacggcgca ctctttgccg cggcagattt aggctacagc aacagccgta cccgatttac
    11041 cgattatgac ggggctgccg tccgccgcca cgcatgggat gcaggcatca acaccggcat
    11101 caaaatcgat accggcatca acctcagacc ctatgccggc atccgtataa accgcagcaa
    11161 cggcaaccgg tacgtactcg acggcgcaga gataaacagc ccggcgcaaa tccaaaccac
    11221 atggcatgcc ggcatccgtc tcgataaaac cgtcgaactg ggtcaagcca agctgacccc
    11281 cgctttcagc agcgattact accatacccg ccaaaacagc ggttccgccc tcagcgtcaa
    11341 cgaccgtacc ttactgcagc aagccgccca cggcacactg cataccctgc aaatcgacgc
    11401 cggatacaaa ggctggaacg ccaaacttca tgccgcttac ggcaaagaca gcaacaccgc
    11461 ccgccacaaa caggcaggaa tcaaaatagg ctacaactgg taacaagccg ataaaaatgc
    11521 cgtctggaac ccgcgtttca gacggcattt gcgttaaaaa tagtaaaccg ttccaaaagg
    11581 gagtagaata gtgccgtttc caaccctgcg cctgtaccgt caggctttta ttatggacct
    11641 tcccagttcg tttttactga acgccccttc cgattccaaa cgacaataac catcccgccg
    11701 gaatgcctcc ccgcacacga cgggcggagc atttatgagc atcgaacaca ctcctccgac
    11761 acacgacggc gaaaccggtc aaaaccatgc cgaacgccct tccgctgatt tcgaccgtgt
    11821 ccactccctc tgcgaaatcc tcgaacctgc ctttgaacaa atcgaaaacg gcacaccgct
    11881 cgaagacgcg ccgctgcgcg acaagctgac cgagctgacc gtcctcttga gcgagctgca
    11941 ccctgccgac gtggcggcag tgttggaatc gctgccgccg cgcgaacgca atatcgtctg
    12001 gattctggtc aaaccggaag acgacggcga agtcttgctg gaagtgtccg atgcggtgcg
    12061 cgaaacgctg atcgagtcga tggacaaaga cgaattgttg gcggcggtcg atgatttgga
    12121 cgcggacgaa ttggcggagc tggcagacga tttgccgcac caagtggttt atgaagcctt
    12181 gcagacgcgc gacgaggaag agcgcgcaca agtcaaagcg gcaatgtcct acgaagacaa
    12241 ccaagtcggt gcgattatgg acttcgagtt ggtcagcatc cgcgccgatg tcgcctgtga
    12301 agtggtgctg cgctatctgc gccgcttcga cagcctgccc gaccataccg acaagatttt
    12361 tgtggtcgat gaaaacgacg tactgcaagg cgtgctgccc atccgcaaac ttttggtcgc
    12421 cgatcccgaa gatttggtgg aaaacgtgat ggcgaaagat gtcgtgcgtt tccgcgccga
    12481 agacgacgtg gaagaagcag cgcaggcatt cgaacgctat gacttggtta ccgcgcccgt
    12541 cgtcgatgaa aacaaaaagc tcatcggcag ggtgaccgtt gacgaaatgg tggacgtgat
    12601 ccgcgaagaa tccgaagcgg atatgttgaa catggcaggt ttgcaggaag aggaagacct
    12661 gttcgccccc gtcttggatt ccgtcaaaaa ccgctggatg tggctcgccg tcaacctctg
    12721 caccgccttc ctcgccagcc gcgtcatcgg cgcgtttgaa ggcagcatcg aaaaaatcgt
    12781 cgcactcgcc gcgctgatgc ccatcgtcgc cggcatcggc ggcaactcgg gcaaccagac
    12841 gattaccatg attgtccgcg cgatggcgat ggggcaactg acaggcatgc aggcaggcag
    12901 gctgttgaaa aaagaagtcg gtgtcgcctt ggtcaacggc atcatttggg gaacggtcat
    12961 gggcgcagta tcttggctgc tttacggcag cctcggcatc gggctggtta tgattgccgc
    13021 gatgacgctc aacctcctgc tggcggcaac cgtcggcgta ttaattcccg tggtaatgga
    13081 aaagttcgga cgcgatcccg cactgggcag ctcggtgctg attaccgccg ttaccgactc
    13141 cggcggcttc ctgattttct tggggctcgc caccctattc ctgctttaaa tgccgtctga
    13201 acccgcgcaa aaatgccgtc tgaagcggaa gctgcttcag acggcatttg actatttatc
    13261 cttgttgcac aagattattg gacggtatgc cggggcagcc ctttggcaac gccgaccaca
    13321 tcctccccga acagcgcgtt gacatcggtt tcgtcaaaca catatttgct gtggcagaaa
    13381 tcgcaatcga cttcgatgct gccttgttcc accaccacgc cgccgacttc ttccccgccc
    13441 agcatcaaca gcatatcgct gactttgccg cgcgaacagg tgcatgaaaa ttcaaacgtt
    13501 tccggctcga acacgcgcgg cggcgtttcg tggaacaagc ggtacaaaac atgttgcgca
    13561 tccaattctg ccaactcgcc cgccgtcagc gtgcgcgcca gcgtactgac gtgttcccat
    13621 gcctcttcat ccaacacctc ttcaggcaga cgctgcacca gcagaccgcc cgccgcttca
    13681 tcgcttgcag acaggacgat gtgcgtatca agctgttcgg aacgtttcat atagttcatc
    13741 aacatttgcg cgataccgtc gccttccaaa ggcactacgc cctgccaggg ttcgccgtct
    13801 ttgggctgca gcgtcagcac gaatacgccg ccctcgccca aaagatcgac caaactttca
    13861 tcttcaccga tttctgcagc ctcgtcccac cgcgcggtcg cacggacggt acggtcggaa
    13921 gtcgcttccg caaccagcat tttcagccgc ccctgcccct gaacctgcac aatcagcgtg
    13981 ccttcgtttt tgaggttgcc cgacagcaga acaccggcag ccaacagctc gcccaaggcg
    14041 cggcggatgg cggcgggata gtttttctgt tttacaatgt gctgccactc gttttccaga
    14101 cggacgtgca gcccgcgcac gggcatatcg tcgaagataa agcgggtacg cacatcggcg
    14161 cggttgatgg cggtttgatt catgattttc tctgactgat tgttcggatg gcggctatat
    14221 ggttgcggtc ggcgcgaaaa caagacggac ggcggatgcg cttcccaaat tatcaataaa
    14281 ttatataaaa atcaacatat taactcaatc taacaagccg ttttttgcca aacagccgtt
    14341 tttttatata caatcaacaa gatattttcg actgatacag cataacatcg cacggcggca
    14401 cgatgcctcc tgcgcggaaa caccgatatg gattcttttt tcaaaccggc agtttgggcg
    14461 gttttgtggc tgatgtttgc cgtccgcccc gcccttgccg acgagttgac caacctgctc
    14521 agcagccgcg agcagattct cagacagttt gccgaagacg aacagcccgt tttacccatc
    14581 aaccgagccc ccgcccggcg ggcgggcaat gccgacgaac tcatcggcaa cgcgatggga
    14641 cttttgggta ttgcctaccg ctacggcggc acatcgattt ctaccggttt tgactgcagc
    14701 ggcttcatgc agcacatctt caaacgcgcc atgggcatca acctgccgcg cacgtcggca
    14761 gaacaggcgc ggatgggtac gccggttgcc cgaagcgaat tgcagcccgg ggatatggtg
    14821 tttttccgca cgctcggcgg cagccgcatt tcccatgtcg gactttatat cggcaacaac
    14881 cgcttcatcc acgcgccgcg cacggggaaa aatatcgaaa tcaccagcct gagccacaaa
    14941 tattggagcg gcaaatacgc gttcgcccgc cgggtcaaga aaaacgaccc gtcccgcttt
    15001 ctgaactgat ttcccaagga atacgcaatg agtatgcccg aaatgcccaa atggtacgac
    15061 gatgacggac agatcgtgtc ctgtaccgaa aaggtcaaag tgatgtccga aaatatggcc
    15121 gagctgtatc agacggcaca agacgcgttt gaagacgcgc tgctgatggg ttgcggcgaa
    15181 cgtcagttgc gcgattacct gctcgcgctg attgaaggtt tggaaaatcc ctaccgcaaa
    15241 gtctgaacac gccccggttg ctgcggcacg gtttatccgt gccgtttttg cgtttgtgcg
    15301 cggcttcggc ttttcagacg gcatatttga cgttatgatt aaacagttaa caagatttat
    15361 cacaacgccg tcaaaagaca gacacacaac atgaacatca tccgcgcgct cctcatcatc
    15421 ctcggctgcc tcgccgccgg cgaaaccgcc gttttcctag caggcatcaa actgcccgac
    15481 agcatcgtcg gcatgggcgt gctgtttgcg cttttgcagg caggttgggt caaaacgtct
    15541 tggctgcaac agcttaccga cgcgctgatg gcgaatctga cgctgtttct cgtgccgccc
    15601 tgcgtggcgg tcatcagcta tttggatttg attgccgacg attggttttc gatactggtt
    15661 tccgcctccg ccagcacttt gtgcgtactg ctggttacag gcaaggttca ccgctggata
    15721 cggagcatta tctgatgaac gaaatcctca ggcagcccag cgttctgctt ttcctcacgc
    15781 ttgccgtgta cgcgcttgcg attatcgtgc gcacgcgcac gggcaatatc ttctgcaacc
    15841 ccgtactcgt cagcactatc gtgctgattg cctacctgaa aatcctcgac atcgattatg
    15901 cggtgtacca caacgccgcg caattcattg atttttggct gaaacccgcc gtcatcgtgc
    15961 ttgccgtgcc gctctaccaa aaccgccgta aaatcttcaa ccagtggctg cccgtcatcg
    16021 tttcacagct tgcgggcagc gttacgggca ttgttacggg gatgtatttt gccaaatggc
    16081 tgggcgcgga acgcgaagtc gtcctctcgc tcgcgtccaa atctgttacc aaccccatcg
    16141 ccattgaaat cacccgctcc atcggcggca ttcccgccat taccgccgcc accgtcatca
    16201 ttgccggtct ggtcggacag attgccggtt acaaaatgct gaagaacaca gtcgtcatgc
    16261 cctcgtccgt gggtatgtcg ctcggcacgg cttcgcacgc gatggggatt gccgcctcgc
    16321 tcgaacgcag ccgccgcatg gcggcatacg cgggactggg gctgacgttc aacggcgtac
    16381 tgaccgcgct gattgcgccg ctgctcatcc ccgttttggg attttgaacc cgtttcagac
    16441 ggcatttcag cccatgctgt ctgaacgccg acacactcgc aaggagaacc gttatggctg
    16501 tcaacctgac tgaaaaaacc gccgaacaac tgcccgacat cgacggcatt gccctctaca
    16561 ccgcccaagc aggcgtgaag aagcccgggc ataccgacct gacactgatt gccgtagccg
    16621 ccggcagcac cgtcggtgca gtcttcacga ccaaccgttt ctgtgccgcg cccgtccaca
    16681 tcgccaaatc gcaccttttc gacgaagacg gcgtgcgcgc cctcatcatc aacacgggca
    16741 acgccaacgc gggtacgggc gcacagggca gaatcgatgc tttggcagtg tgtgccgccg
    16801 ccgcccggca aatcggctgc aaaccgaacc aggtgctgcc cttctccacc ggcgtgattc
    16861 tcgaaccgct gcccgcagac aaaatcatcg ccgcgctgcc caaaatgcag cctgccttct
    16921 ggaacgaagc ggcacgcgcc atcatgacca ccgacaccgt gcccaaagcc gcctcgcgcg
    16981 aaggcaaggt cggcgacaaa cacaccgtcc gcgccacggg catcgccaaa ggctcgggca
    17041 tgattcatcc caatatggcg accatgctcg gtttcatcgc caccgatgcc aaagtttccc
    17101 aacccgtcct ccaactgatg acgcaggaaa tcgccgacga aaccttcaac accatcaccg
    17161 ttgacggcga caccagcacc aacgacagct tcgtcatcat cgccaccggc aaaaacagcc
    17221 aaagcgaaat cgacaacatc gccgacccgc gttacgccca actcaaagaa ttgttgtgca
    17281 gcctcgcgct cgaactcgcc caagccatcg tccgcgacgg cgaaggtgcg accaagttca
    17341 tcaccgtccg cgtcgaaaac gccaaaaccc gcgacgaagc ccgccaagcc gcctacgccg
    17401 tggcacgttc gccgctggtc aaaaccgcct ttttcgcctc cgaccccaac ctcggcaggc
    17461 tgctcgccgc catcggttat gccggcgttg tcgacctcga tactgacctc gtggaaatgt
    17521 atctcgacga tattttggtt gccgaacacg gtggacgcgc cgcaagctac accgaagcac
    17581 aagggcaggc ggtgatgtcg aaggccgaaa tcaccgtccg catcaagctg catcgcggac
    17641 aaagtgccgc caccgtctat acctgcgacc tgtcgcacgg atacgtttcc atcaacgccg
    17701 actaccgttc ctgacccgac acggcttcag acggcataca taaaatgccg tctgaaccgc
    17761 cggacaacat gccatgacct ccacattccc ccgccgcctc gcccgcaaaa tccgccaaac
    17821 ccgccgcctg tcgcgcaaaa gcatcgcctt tctgttcctt ttggcaggtt cggcactcgt
    17881 cgccctgacc gcgctgtttt ttgcccatct tgccgatttt gcgctggaac tgaacgccaa
    17941 actggttcaa caatacccgt ggttcgcgtg ggtcgcgctt cctttgggtt tgccgcttat
    18001 tgcgtggctc acacgcaaat tcgccccctt caccgccggc agcggcatcc cgcaggtcat
    18061 cgcctcactg tcgctgccct acggcgcaca gaaaacgcgg ctgatccgcc tcgggcagac
    18121 gctgctgaag attccgctga cctttttggg tatgctgttc ggcgtgtcca tcggacgcga
    18181 aggtccgtcc gtgcaggtcg gcgcggcagt gatgggcgcg tggggcgcgt ggtgcaagaa
    18241 acacggcttg gcattcaaag ggatgcagga aaacgatttg atggcggcgg gcgcggcggg
    18301 cggtttggca gccgcgttca acgcgccgct ggcgggcgtg attttcgcca ttgaggaact
    18361 cgggcgcggc atcatgttgc gctgggagag gcaaattctt ttgggcgtgc tcgcctccgg
    18421 tttcatacag gtcgccattc agggcaacaa cccgtatttt tccggcttca acggcggcgt
    18481 attggaacat atctttctgt gggtcgcact gtccggcctg gtttgcggcg cggcgggcgg
    18541 cctgttcgga cgtttgctct atcgcggtgc ggcggcgttt gcaccgcgca agatacgcgg
    18601 cttcatccgc aaccgtccgc tgctgctggc ggcactgatg gggctgctgc tcgccctgct
    18661 cggcacgttc taccaaggca aaacctacgg caccggctac cacgaagccg cccaagccct
    18721 gcacggcatc tacgaagccc ccttcggact cgccgccgcc aaatggctcg ccaccgtatt
    18781 cagctattgg gcaggcgttc cgggcggcat tttcactccc tcgctgacca taggcgcggt
    18841 tttgggcgag catatcgccg ccatcgccga catatcgcag ggtgcaaaca tcatcgtcct
    18901 catctgcatg gcggcatttc tggcgggcgc gacacaatcc ccgattactt ccgccgtcgt
    18961 cgtcatggaa atgacgggcg gacaaagcct gctgttttgg atgctaattg cctgcatttt
    19021 cgcctcgcag gtttcgcgcc agttttcgcc gcgtccgttc taccacgcat cgggaatgcg
    19081 cttccgccag cgcgtgcttc aagaaaccgc cgcccaaacc ggcaatgcgc ccgcaagacc
    19141 gcaaacagca aacagcaaaa cgggaatgcc gtctgaaaat taaaacgccc ccgatcaaac
    19201 gccggcagcc gccttgattt gaataccgtt ccgccgccgc ttgaaatttc agcaacaatg
    19261 ccgtctgaac gacagaatgc ggttttcaga cggcatttcc ccatcccgat attgcctaaa
    19321 caaaaccgaa gcgtttgcta taattgcact ttttaccgca cacgcacgcc catgtttccc
    19381 gatttctccc aaaccctctc caaagaccgc cacttcctgc aatccgcctt caaaaatccc
    19441 aacaaatacg gcggcttgtc caaagtcgaa gaaaaatacc gaaaatcgca cgaaatcttt
    19501 ttgaaacgtt tggcagcctt gcccaaaccc gaattcgaca acaccctgcc cgttcacgaa
    19561 aaacttgacg aaatcaaaaa aaccgttgcc gaacatcagg taacgattat ttgcggcgaa
    19621 accggttcgg gcaaaaccac gcagttgccc aagatttgtt tggaactcgg gcgcggggta
    19681 gcgggtttga tcgggcatac ccagccgcgc cgtttggcgg cgcgttcggt ggcagagcgg
    19741 attgccgaag agctgaaatc cgaaatcggc agcgcggtcg gctataaagt acgcttcacc
    19801 gaccacacct cgcgcgatgc ctgcgtcaag ctgatgaccg acggcatcct gctggcggaa
    19861 acgcagaccg accgttatct cgccgcctac gacacgatta tcatcgacga agcgcacgag
    19921 cgcagcctga acatcgactt ccttttgggc tatttgaaac aactcctgcc gcgccgcccc
    19981 gatttgaaag tcatcatcac ctcggcaacg atagacgcag aacgcttctc ccgacacttc
    20041 aacggcgcgc ccgttttaga agtgagcgga cggacgtatc ccgtcgaaat cctctaccga
    20101 ccgctgaccg gcaaagacga agacgacgca gaagtggagt tgaccgacgc gattgtcgat
    20161 gcggcggacg aattagcgcg acacggcgaa ggcgatattt tggtattcct gccgggcgag
    20221 cgcgaaatcc gcgaaactgc cgaagcctta cgcaaatcta cactgcgccg caacgacgaa
    20281 atccttcccc tgttcgcacg cctgtcgcac gccgagcagc acaaaatctt ccacccttca
    20341 ggcgcgaaac gccgcatcgt attggcaacc aacgtcgccg aaacctcgct taccgtgccg
    20401 ggcatcaaat acgtcatcga caccggcctc gcgcgcgtca aacgctattc cgcacgggca
    20461 aaggtggagc agcttcatgt cgaaaaaatc tctcaagccg ccgcccgcca acgctccggc
    20521 cgctgcggac gcgtctccgc aggcgtgtgt atcagactgt tttcagaaga agatttcaac
    20581 agccgccccg aatttaccga cccagaaatc gtccgcagca acctcgccgc cgtcatcctg
    20641 cgcatggcat cgctgaacct gggcgatgtg gcggcattcc catttttaga aatgcccgat
    20701 tcgcggtata tcaatgacgg ttttcaggta ttgctggaat tgggggcggt agaggccgtc
    20761 tgaaaacaag taggatatac acttctacct gacaaagacc aacaaacgat aaaactacgg
    20821 cacatctaga tgcccaacct acaacattgc acacggtaaa aacatgaaac acttactcat
    20881 cgattttgaa aacgtccagc cgcaaaactt agacaaatta ccaaccgaaa atacccatat
    20941 ttggctattt ataggtgtat tacacaaaat gttacctatt agtctggtgc aatccctact
    21001 acgtttcggc gaacgtgtcc atcttgtcca gttacaaaaa acggggaaaa acgcattgga
    21061 tttttacctg tcctattacc tcggacaaat taccgccaca gaccccaatg cccaaatcgg
    21121 catactctcg cgtgatggag gatacgatgt tctggtcgaa catattttga aaaaccacca
    21181 ggcgaagggt atcgtgcgcc tagccaatat agatgaagta caacatcaga aaattactac
    21241 cgaaccgccg tcagcattgc tggaaaacac tcctcagcct gaaaccaccc tcaaaccaca
    21301 gcaaccatta acttcctatt tccaagcagc cctaactgca ctgcgccgcc ccgacgcttt
    21361 ccgcccctgc cgcctgcata acctgcgaca aaatctgcgt aagcatattt tgagtgattt
    21421 gtttaaagaa aaaaccgatg aagaatgcga aataaccact gctaacgtta tcaataaact
    21481 caaagcacaa aacttcatca gcattgatga acaggaaacc gtttcctacc atctcagtga
    21541 taatgatttg ttacaaagaa tccaacgcca tattttaagc caacgtccca aaacctacgc
    21601 tgattttcaa gccgtcgtgc aaaaccgagc agatgcactt cacttaacag tcggtaccaa
    21661 cgacattcaa tcctttgcgc gacatttgcg cgaccaaaac ctgatccgcc aaaacaatgg
    21721 gaaaattgaa tatgcaccgt ttactgaacc taaaccacag ccaacgccca agcagcctaa
    21781 aaaaaccgca tgggaacctg atgaaattat ttggaaaaaa gtgattgccg cgttatcgtt
    21841 aaagaaccgt cctaataaaa ccaaaacttt acgcaataca atccaggcac tcacaaaatc
    21901 caatgcacaa gaaactgaca aactgctaca acatttacaa gatacccaag tcctacgtat
    21961 tgacggtact aaaattgtgt atatcaagta ggatgggcat ttatgcctga cctacaaaac
    22021 caaaaacaac ctaccaccct taatcaactc cacaaaccct tttcagacaa cctcgttttt
    22081 tgaaaaacaa tctgtaaaca gatagctgct gaagaatacc gttgccgagc cccaaaaccc
    22141 gtcctgcaac ttttattgtg aacttcccat tatgaaaaaa tcccttttcg ttctctttct
    22201 gtattcgtcc ctacttactg ccagcgaaat tgcttatcgc tttgtattcg gaattgaaac
    22261 cttaccggct gcaaaaatgg cagaaacgtt tgcgctgaca tttgtgattg ctgcgctgta
    22321 tctgtttgcg cgttataagg cgacgcgttt gttgattgcg gtgtttttcg cgttcagcat
    22381 tattgccaac aatgtgcatt acgcggttta tcaaagttgg atgacgggca tcaattattg
    22441 gctgatgctg aaagagatta ccgaagttgg cggcgcgggg gcgtcgatgt tggataagtt
    22501 gtggctgcct gcgttgtggg gcatgttgga agtcatgttg ttttgcagcc ttgccaagtt
    22561 ccgccgtaag acgcattttt ctgccgatat actgtttgcc ttcctaatgc tgatgatttt
    22621 cgtgcgttcg ttcgacacga aacaagagca cggtatttcg cccaaaccga catacagccg
    22681 tatcaaagcc aattatttca gcttcggtta ttttgtcgga cgcgtattgc cgtatcagtt
    22741 gtttgattta agcaaaatcc ctgtgttcaa acagtctgcg ccaagcaaaa tcgggcaggg
    22801 cagtgttcaa aatatcgtcc tgattatggg cgaaagcgaa agcgcggcgc atttgaaatt
    22861 gtttggctac gggcgcgaaa cttcgccgtt tttgacccag ctttcgcaag ccgattttaa
    22921 gccgattgtg aaacaaagtt attccgcagg ctttatgacg gcagtatccc tgcccagttt
    22981 ctttaacgtc ataccgcatg ccaacggctt ggaacaaatc agcggcggcg ataccaatat
    23041 gttccgcctc gccaaagagc agggctatga gacgtatttt tacagtgctc aggctgaaaa
    23101 ccaaatggca attttgaact taatcggtaa gaaatggata gaccatctga ttcagccgac
    23161 gcagcttggc tacggcaacg gcgacaatat gcccgatgag aagctgctgc cgctgttcga
    23221 caaaatcaat ttgcagcagg gcaggcattt tatcgtgttg caccaacgcg gttcgcacgc
    23281 cccatacggc gcattgttgc agcctcaaga taaagtattc ggcgaagccg atattgtgga
    23341 taagtacgac aacaccatcc acaaaaccga ccaaatgatt caaaccgtat tcgagcagct
    23401 gcaaaagcag cctgacggca actggctgtt tgcctatacc tccgatcatg gccagtatgt
    23461 tcgccaagat atctacaatc aaggcacggt gcagcccgac agctatctcg tgccgctggt
    23521 gttgtacagc ccggataagg ccgtgcaaca ggctgccaac caggcttttg cgccttgcga
    23581 gattgccttc catcagcagc tttcaacgtt cctgattcac acgttgggct acgatatgcc
    23641 ggtttcaggt tgtcgcgaag gctcggtaac gggcaacctg attacgggtg atgcaggcag
    23701 cttgaacatt cgcgacggca aggcggaata tgtttatccg caatgagtgg cgtaaaaacc
    23761 aataaagaca aatttagatg atgtcgggga agatgcccga ccgacaagac tatgcaaaat
    23821 atgaaaaacc aagtacgcgg atcaggcatg gatgcacgat ccaatccggc caatgtttca
    23881 gacggcctgc aaaacagttc gggtcatatc ggtaccaaca cgcgttaccg cctgaccaaa
    23941 ctcggcgaac aaatggcgcg cctgcccatc gacccgaaaa tcgcgcgcat tttgttggcg
    24001 gcgaagaagc acgactgcat ggcggaaata ttggtgatcg cgtccgcgct gtcgattcaa
    24061 gacccgcgcg agcggccgct ggaagcgcgc gatgccgccg ccaaggcgca cgagcgtttt
    24121 accgacaagc aatctgactt tcttgcctat ctgaacattt gggacagctt ccagcgcgag
    24181 cgcgacaagg gcttgtccaa caagcagttg gtgcagtggt gccgtcaata tttcctgtcg
    24241 cacctgcgga tgcgcgagtg gcgcgagctg caccaccagc ttgcccaaac cgcgattgaa
    24301 atgggtttga ccaccaagga agcggctttc agacgacttt ccgaaatcaa gcagcttacg
    24361 tcgtctgaaa accaaggcga tcaagactta tccgccaaac gcaaacaaaa acaactggat
    24421 aagaaacaac accgcgccca aatccgcgcc gccaaagaag cgggctacga acaaatccac
    24481 cgcgccctgc tcaccggcct tatcgccaac gtcggcatga aatcgcccga cggcaacgac
    24541 tataccggcg cgcgcggcag ccgtttccac cttttccccg cctccgccct gttcaaagcc
    24601 aaacccaaat gggtgatggc ggcagaactc gttgaaacga caaaacttta tgcgcgcgac
    24661 gtcgccgtta tccagcccga atggattgag caggaagccc cgcacctcgt ccgctaccac
    24721 tatttcgagc cgcactggga acaaaaacgc ggcgaagtcg tcgccagcga acgcgtgacg
    24781 ctttacggcc tgaccgtatt gccgcgccgc cccgtgcctt acggcaaagt tgcgcccgaa
    24841 gaagcacgtg aaatctttat ccgcagcgcg ttggtggcgc aggaatgcga tttgaaagcg
    24901 gatttttttg tccacaataa aaagctgatt aaagaaatta ccgaactcga acacaaatcg
    24961 cgcaagcaag acgtattggt cgacgacgaa gccctgtttg cgttttataa cgaacgcctg
    25021 cccgaaatgg cttggaaaga cgcgcaaggc agcgtttggg gaagtgaaga ttccgtacgg
    25081 attattgaat ctgacaaagc cgagaggtcg tctgaaaatg agcgcaacga gtttcgtaaa
    25141 aacaagcgta atgggtctcg ccaaaatgaa aatcacggca acaccgtagg ttgggttgaa
    25201 aacccaacat cagccgcaac tgcaaaaact gttgggtttg acaacccaac ctacgctact
    25261 cagcaaccca ccccctcccc cgcgagggag ggtcggggag agggcaaaac agttgccgca
    25321 caaaccaact tttccgcaac cgcagcaaac cctctcccgc aggagaggga gcagagtgcc
    25381 gcagcttcag cggtttcaaa cgacctgcat cctgcaaatc cccaacaaac cgccccctcc
    25441 cccgtggggg agggctgggg agagggcaaa acagttgcca cccaaaccaa cttctccgca
    25501 accacagcaa accctctccc taaccctctc ccacaggagg gggaacagag tgccgcagct
    25561 tcagcggttt caaacgaccc tcaaccccaa aagcagccag caccccaaaa agaccgtctg
    25621 aaacccctcc ccctcgccga catccgcacc ttccaagcct ggctcaaaac cgccgaacgc
    25681 gagaacccgc gcctgctgtt cctcagccgc gacgatttga tgcaacacgc cgccgcacac
    25741 attaccgaag aacaattccc caaattctgg caaaccgcag acggcaagtt cgaactcagc
    25801 taccgcttcg agccgcacca cccgctcgac ggcgttaccc tcaccctgcc gcttaccgtg
    25861 ctcaaccgca tcagccccgc cgccctcgaa tggctcgtgc ccggtatgtt gcgcgagaaa
    25921 atccagctgc tgattaaagc actgcccaag caaatccgcc gcatctgcgt gcccgtgccc
    25981 gaattcatca cccaattttt aagccaaaac cccgaccgca acgcccccat cctgccccaa
    26041 ctcgcccaag ccatcgccaa aaccgcaggc gacatccgca tattcgagca aatcaaccaa
    26101 gacgaatggg ccgcgttcag gctgcccgaa cactgctatt tcaacctccg catcatcgac
    26161 gacggcggac aagaattagc catagggcgc gatttaatcc aaatccaaca acaactcggc
    26221 caagccgccg ccgttacctt ccgcgacaac acccaagaat tcgagcgcga caacgtgacc
    26281 acatgggaca tcggcatcct gcccgaatcc atcaaattcg cacgcggcaa acaacagctt
    26341 accggctatc tcggcctgca aaaagaaaaa gacggccgca tcgccctgcg cctgttcgac
    26401 acaatagaag ccgccgaaca ggcacaccgt caaggcgtga tagaactcat gaaactacaa
    26461 ctaaaagaac aagttaaaga cctgaacaaa ggcatccaag gcttcaccca agccgccatg
    26521 ctgctcaaac acatcaacgc cgacaccctg cgcgacgacc tcacccaagc cgtctgcgac
    26581 cgcgccttta tcggcgaaga cgagctgccg cgtaacgaaa aagcctttaa agagcaaatc
    26641 aaacgcgccc gcagccgcct gcctgccgtc aaagaagccc tcagccgcta cctgcaggaa
    26701 accgcagccg cctacgccga actcaacagc aaactcggca aacacccatt gacccacctc
    26761 ctacgccaac gcctgcaaac cctgctcgcc gccggcttcg ccacccgcac cccgtgggca
    26821 caatggccgc gcctccccat ctacctcaaa gccatgaccc tgcgcctcga aaaatacagc
    26881 agcaaccccg cccgcgacgc agcccgcgaa gccgatatcc aagagctgga acaaatgtgg
    26941 caggaaaaaa cagacagcct gattaaacaa ggtctcccca tttcagacgg cctcgccgcg
    27001 tttaaatgga tgattgaaga attgagggtg tcgctgttcg cgcaggaatt gaagacaccg
    27061 tatccggtgt cggtgaagcg gttgttgaag atgtgggagg atcttaatta aaggaagatg
    27121 ccgtctgatt ttttcagacg gcatctttta tttccctgac caaccgattt aatcgctccc
    27181 taccaatagc tttatttttt aattcgcact cccaaacgac aatcactttg aaaccgatct
    27241 tttccagctc ggtttcattt ttaatatcac gttcgcaatt ttttgtgatt ttttccaacc
    27301 aaaaatccgt attgcttttc gggatatgtc ctttattaca agaatgcccg taccaaaaac
    27361 agccgtgtat aaacacgact gttttatatt tcggcaaaac gatatccggt ttgcctgcat
    27421 agcgtttatc gtttttccga taacgaaaac cttgggagaa aagaaatttc cttaccaata
    27481 tttccggttt ggtttctttg ctatggattt ttgacatcac gaaagaacgt ttggatgtag
    27541 tgaaaatatc ggtcataaat tacttggaag ataccacctt cgatcgtttt tttgtctgtt
    27601 ccacttttct taacaaatac gaaaccaagc ttattaaatc caaagcatcc ttatcattaa
    27661 aaatactagg agataaattt gctcttaact catgttgtac aggatttcta aatccagtcc
    27721 atgttccgca tgcaagctgt tcaagaccat cttctaaatt ttgttccgcc ttcgttttgt
    27781 tattcgttaa tagaagtata gaatttttac tcccgaaagc ttgttcaatc aattctcttc
    27841 cgtctatgct atgaagacct gtttgcttct gaaccttatt ttcgaaaact ttaactgcct
    27901 cgattgcagc acttaaataa tccttctttt cattgtaaaa atcattacag gcagtatgca
    27961 aatcctgatg caaatgccgc caatgatagt aaggatattc tggaataata ctatgtaagg
    28021 cagagattac ttccgcttgc tctttatttg taagctccga atcttccaaa cgattcaaaa
    28081 taacttctac tggttccctt tccttttctg gcaatttgtt tttccaattt tcgatatcaa
    28141 ccccgctttc acctttcact tcgtcatctt tttctttttt tcttcttttt ctccaatctt
    28201 gcccgatggc tcgaacgatt tccccaagga aaacccgtaa ctttgaagtt ttaggatgct
    28261 tccaatccaa tgatgtccta tctgtagcaa ttaaatcttc atcatcatta tctataaaat
    28321 caatacttaa ccatcctgtc agataggaat agaaatggct ggattcgcta tcagtgaaaa
    28381 actcgggcat atttaccatt ctgccgttgg caaacaaggt aatacctttc atattattct
    28441 ttaaaggttt ttccgttgta atgaacttac cttgtattaa tccgctgtat tcatactgtt
    28501 cgaattttga agataacgat gaaatattgg ttgctagatc ctggtattcc cattcgaatt
    28561 gtggggtaac aagatcatat tttagatttc catcaatgat tttgggttcc gagccgttca
    28621 agcttacttt gattttaaaa tcctgagccg gaaaatcaaa caagcgggaa agatgctcca
    28681 cataattatc taacgggtat ccttgttttt tcgtcagttc ggttaaagtt atggttgttc
    28741 cgttttcggt attgggttca acagattctt tctgaaactc cggttgataa atacgctcac
    28801 tttttttaat ctctgcataa tccaaagtaa aagtaacccg ttcgtttcct tggatagtag
    28861 aaatttcaat tttgttgcca agcccgaata atgccaattt accaaggcct tttttacccg
    28921 ttggaattct tccgcacggg gaggcttgtt tttcttccct tctgttccga ccgattctca
    28981 aataaaaatc attgatttca tcgaagctca ttcctatacc attatcttta ataacgattt
    29041 tatgctccgg tttatcgaat aacctaactt ccacttccgt agcacatgca tcgtaggcat
    29101 tcgctatcaa ctcggcaatc gcaggaacag tgtgcgaata catctttaca cccaaatgtt
    29161 cgattacggt tggctcgaaa ctcattttca atttttcttc agacatgttt tctccttttc
    29221 taacattcga tattatcaac aattgccctg cctatttttt ccgcatacat cggaggaacg
    29281 gcattaccaa tcaaacgggc tatcttgtcc ctgctgcccg ctttaaagac atagttacga
    29341 gggaacgatt gcaatgttgc accttcgcgc agtgataacg ccctatcttc ttcaggatgg
    29401 gcaaacctcc cgttggaaat actaaagaat ttggtcgtta tggtaggtgc gggcttatcc
    29461 caccatagcc taccaaacgt gtctttaaaa ctattgtctt ttccgataaa acattccagc
    29521 tgtaattcgg gaatatgcgc aaaagccaaa cggtttcctc cgtttttagg tatcaaagcc
    29581 aatcgtttca agttgatatc agataatccc gcacagctat gcataaaatc cgtttcgtct
    29641 tggtgtcctg caataatttt gggaaagcca ttttccattc ccaaaacatc gcgtaccgta
    29701 agccgtttgc ccgaatactt gactggttcc agcttttctt tggttattct gtttgcaatt
    29761 aacgtaaatc ttttacggct ttggggaatt ccgtaatcag ccgtattgtg aataccgaaa
    29821 tggacggtaa atcctttttc ttccaataac tttatgaaat tatcaagcct gctttctttc
    29881 attctgctca gaattcccgg tacgttctct acaacaacat atccgggatt gaaatattct
    29941 acaaaccgct gaaactccaa aagcaaactc ttggattttt ccgattttct tttgtctgtt
    30001 tgaataacac tccaatattg acaaggacta caacctataa gaatcaaatc atcatcattc
    30061 ttttttaacc cgagttcttt ttccaaggtt tcaggctgca attcaaaaac atcagcctgt
    30121 ataaatttgg catttatatt ggcttcatat gtttctttgc agctgggttc gtaatctatc
    30181 ccggctaaaa cctgaatacc ggcggattgc attccatagc tcattccacc tccgccacag
    30241 aaaaaatcaa ccgcctttaa cttactgttt ttcatttcta tttaaataat tagacta
//
LOCUS       DAXIFD010000006        27432 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.006, whole genome shotgun sequence.
ACCESSION   DAXIFD010000006 DAXIFD010000000
VERSION     DAXIFD010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 27432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27432
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.006"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(222..1286)
                     /locus_tag="ACFOCN_000212"
     CDS             complement(222..1286)
                     /locus_tag="ACFOCN_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6969432.1"
                     /translation="MEKEFRILNIVSAKIWGGGEQYVYDVSKALGLRDCTMFTAVNKN
                     NELMHRRFSEVSSVFTTRLHTLNGLFSLYALTRFIRKNRISHLMIHTGKIAALSILLK
                     KLTGVRLIFVKHNVVANKTDFYHRLIQKNTDRFICVSRLVYDVQTADNPFKEKYRIVH
                     NGIDTDRFPPSQEKPDSRFFTVAYAGRISPEKGLENLIEACVILHRKYPQIRLKLAGH
                     GHPDYMCRLKRDVSASGAEPFVSFEGFTENIASFYRQSDVVVLPSLVPEAFGLSLCEA
                     MYCRTAVISNTLGAQKEIIEHHQSGILLDRLTPESLADEIERLVLNPETKNALATAGH
                     QCVANRFTINHTADKLLDAI"
     gene            complement(1287..2045)
                     /locus_tag="ACFOCN_000213"
     CDS             complement(1287..2045)
                     /locus_tag="ACFOCN_000213"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6969433.1"
                     /translation="MKKVSVLIVAKNEANHIQECIESCRFDKEVIVIDDYSTDNTAEI
                     AEGLGAKVFRRHLNGDFGAQKTFAIEQAGGEWVFLIDADERCTPELSDEISKIVQTGD
                     YAAYFVERRNLFPNHPATHGAMRPDSVCRLMPKKDSSVQGKVHETVQTPYPKRRLKHF
                     MYHYTYDNWEQYFNKFNKYTSISAKKYREQGKPVRFVRDIILRPIWGFFKIYILNKGF
                     LDGKMGWIMSVNHSYYTMIKYVKLYYLYKSGGKF"
     gene            complement(2120..2195)
                     /locus_tag="ACFOCN_000214"
     tRNA            complement(2120..2195)
                     /locus_tag="ACFOCN_000214"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2160..2162),aa:Ile,seq:cat)
     gene            complement(2324..3358)
                     /locus_tag="ACFOCN_000215"
     CDS             complement(2324..3358)
                     /locus_tag="ACFOCN_000215"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: protein motif:HMM:NF006587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HFC6969434.1"
                     /translation="MEAQLGAPIEDYAPPKHWTRKQLRSMGRVSYLCVDAAEQALTDA
                     GLLGDESITDGRMGVACGSSSGSTKDIGDVGELLLTGMSRNFSANTYVRMMPYTAAAN
                     IGIFFGLKGRIIPTSSACSSGSQGIGYAYEAIKYGLTDMMLAGGGEEFFPSEVYVFDS
                     LYAASRRNGEPEKTPRPYDANRDGLVIGEGAGIFVLEELEHAKRRGAIIYAELVGYGA
                     NSDAYHISTPRPDAQGAILAFQTALQHAGLAPEDIGWINLHGTGTHHNDSMESRAVAA
                     VFGNNTPCTSTKPQTGHTLGAAGAIEAAFAWGFADRQSNPEGKLPPQLWDGQNDPDLP
                     AINLTGSGSF"
     gene            complement(3362..3880)
                     /locus_tag="ACFOCN_000216"
                     /pseudo
     CDS             complement(3362..3880)
                     /locus_tag="ACFOCN_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            3981..4481
                     /locus_tag="ACFOCN_000217"
                     /pseudo
     CDS             3981..4481
                     /locus_tag="ACFOCN_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714696.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
     gene            4484..4567
                     /locus_tag="ACFOCN_000218"
                     /pseudo
     CDS             4484..4567
                     /locus_tag="ACFOCN_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222119.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            4848..5282
                     /locus_tag="ACFOCN_000219"
     CDS             4848..5282
                     /locus_tag="ACFOCN_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969435.1"
                     /translation="MCGLWLLRALTAKLPQQRYAALFITLFFAAVLVFGRHDSMYWYP
                     VLVNLMMLAVFGGSLFAGQTVIEKLARLQQPDLPEKAVRYTRRVTQVWCVFFIANGTL
                     AALLARLGRYDWWAVYTGVIAYVLMGMPFAGEWLYRKLVLKV"
     gene            5289..5804
                     /locus_tag="ACFOCN_000220"
     CDS             5289..5804
                     /locus_tag="ACFOCN_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2199 domain-containing protein"
                     /protein_id="HFC6969436.1"
                     /translation="MYTCTSCGEKHEDMPAIGFTAPYPYNQLSEEERIAYQAECGGDF
                     CIIRYPDQTDRFIRAVLLIPIIGHEETLEYGVWVSVSEKSFNDYQSHFHDNPENVVYF
                     GMICNRLPPYETDTFGLHCNVVTQPDGQRPLLQLHQGSEHPLVRDFYHGIEYAEAQAR
                     IGAVSESDCSG"
     gene            5824..7302
                     /gene="ubiD"
                     /locus_tag="ACFOCN_000221"
     CDS             5824..7302
                     /gene="ubiD"
                     /locus_tag="ACFOCN_000221"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HFC6969437.1"
                     /translation="MKYKDLRDFIAMLEQQGKLKRIAHPVSPHLEMTEIADRVLRAEG
                     PALLFENPVKPDGTRYGYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEP
                     PKGIKDAFSKLPLLKDIWSMAPNVVKNAPCQEIVWEGENVDLYKLPIQHCWPEDVAPL
                     VTWGLTVTRGPHKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEFRKLNPDTPYP
                     VAVVLGCDPATILGAVTPVPDTLSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLE
                     GVIHPNETALEGPYGDHTGYYNEQDHFPVFTVERITMRENPIYHSTYTGKPPDEPAVL
                     GVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLR
                     QFMYTKFIIVVDDDVNVRDWKEVIWAVTTRMDPVRDTVLVENTPIDYLDFASPVSGLG
                     GKMGLDATNKWPGETDREWGRVIKKDPAVTAKIDGIWEELGL"
     gene            complement(7367..9481)
                     /locus_tag="ACFOCN_000222"
     CDS             complement(7367..9481)
                     /locus_tag="ACFOCN_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HFC6969438.1"
                     /translation="MDLLSVFHKYRLKYAVAVLTILLLAAVGLHASVYRTFTPENIRS
                     RLQQSIAHTHRKISFDADIQRRLLPRPTVILKNLTITEPGGDQTAVSVQETKIGLSWK
                     NLWSDQIQIEKWVVSSAELALTRDGKGVWNIQDLIDSQKRQASVNRIIVENSTVRLNF
                     LQEQLILKEINLNLQSPDSSGQPFESSGILVWGKLSVPWKSRGLFLSDGIGTPKISPF
                     HFEASTSLDGHGITISTTGSPSVRFNAGGADAAGLGLRADTSFRNLHLTAQIPTLALR
                     NNSIKIETVNGAFTAGGEYAQWDGSFKLDKANLHSGIANIGNAEISGSFKTPRHQTNF
                     SLNSPLVWTENKGLDAPRLYVSTLQDTVNRLPQPRFISRLDGSLSVPNLQNWNAELNG
                     TFDRQTVAAKFRYTHEDAPHLEAAVALQKLNLTPYLDDVRQQNGKIFPDTLAKLSGDI
                     EAHLKIGKVQLPGLQLDDMETYLHADKGHIALSRFKSGLYGGHTEGGISIANTRPATY
                     RLQQNASNIQIQPLLQDLFGFHSFSGNGDAVIDLTAGGETRKELIRSLQGSLSLNISN
                     GAWHGIDMDNILKNGISGKTADNAAPSTPFHRFTLNSEISDGISRHIDTELFSDSLYV
                     TSNGYTNLDTQELSEDVLIRNAVHPKNKPIPLKITGTVDKPSITVDYGRLTGGINSRK
                     EKQKILEDTLLEQWQWLKPKEP"
     gene            9572..10465
                     /locus_tag="ACFOCN_000223"
     CDS             9572..10465
                     /locus_tag="ACFOCN_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HFC6969439.1"
                     /translation="MIIVMSRRAAEADIAGVVAFIRSRGLREHISHGDERTVIGAIGD
                     DRVLSVREVQTLPEVEKAVRILDTWKTVSRENRAEDSRVAAKGVAFGGGETVRIAAEP
                     SVWRNADAVFLDPFFTSANLYDTSSADERRGRCRRLAEQTASAHGAGKPVLVRVRNVR
                     HVEAALNAGADILYLGGGLMSDLAVLNEAGNLNIPLVLCKDKHHSAEDWLNAAEYVVS
                     RGNRHLILGESGVLNHTKGHPYRLDVESIVKVRQISHLPVIANITGLWNRDMPQEILY
                     GLAKAAGACGIVGTCFEKSGG"
     gene            10605..11462
                     /gene="folP"
                     /locus_tag="ACFOCN_000224"
     CDS             10605..11462
                     /gene="folP"
                     /locus_tag="ACFOCN_000224"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HFC6969440.1"
                     /translation="MARHVWQAGRFEIGLDKPKIMGIVNLTPDSFSDGGVYSQNAQTA
                     LAHAEQLLKEGADILDIGGESTRSGADYVSPEEEWARVEPVLAEVAGWGVPISLDTRR
                     TVIMEKALALGGIDIINDVAALNDEGAVELLARQADTGICLMHMQGLPKTMQINPKYQ
                     DVVGEVARYLKARSAECIAAGIAPQRIILDPGFGSGFGKPLQHNIALMRHLPELMAET
                     GFPLLIGVSRKSTIGELTGEANAAERVHGSVAAALASVARGAQIVRVHDVKATADALK
                     VWEALGINL"
     gene            11592..12926
                     /gene="glmM"
                     /locus_tag="ACFOCN_000225"
     CDS             11592..12926
                     /gene="glmM"
                     /locus_tag="ACFOCN_000225"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFC6969441.1"
                     /translation="MAKKYFGTDGVRGEVGQFPITPDFVLKLGYAAGQVLVQHDTDQK
                     PTVLIGKDTRISGYMLEAALVAGFTAAGVNVVQTGPLPTPGVAYLTRALRLSAGVMIS
                     ASHNAYSDNGIKFFAEGGVKLSDEVELEIEAKIDGEMKTQPSARLGRARRISGADDRY
                     IEFCKSTFPSHSDLRGLKLVVDTANGAGYGVAPKVFHELGAQVVSIGNEPNGYNINEK
                     CGATYTKTLQAAVLQHEADYGIALDGDGDRLMMVDKNGQVYDGDSLIYVIAKARAREG
                     INIGGVVGTVMTNMAMEIALKEQGVDFCRAKVGDRYVLEQLNQRGWLIGGEASGHILC
                     MDKHNTGDGIISALQVLAALQTLNQDLATVCADWQPYPQTMINVRIQKGQQWQEASKD
                     VLAEVEKELEGKGRVVLRASGTEPVVRVMVEARQADWAREGAERIAAAIGGI"
     gene            13116..13799
                     /locus_tag="ACFOCN_000226"
     CDS             13116..13799
                     /locus_tag="ACFOCN_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6969442.1"
                     /translation="MFALLEAFFVEYGYAAVFFVLVICGFGVPIPEDLTLVTGGVISG
                     MGYTNPHIMFAVGMLGVLVGDGIMFAAGRIWGQKILKFKPIARIMTPKRYAQVQEKFD
                     KYGNWVLFVARFLPGLRTAVFVTAGISRKVSYLRFLIMDGLAALISVPVWIYLGEYGA
                     HNIDWLMAKMHSLQSGIFIALGVLAAALAWFWWRKRRHYQLYRAQLSEKRAKRKAEKA
                     AKKAAQKQQ"
     gene            13866..14858
                     /locus_tag="ACFOCN_000227"
     CDS             13866..14858
                     /locus_tag="ACFOCN_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HFC6969443.1"
                     /translation="MKQKIFVLYTGGTIGMTQSSEGLRPDTALVGQALAPFSNGMDFD
                     WHVCGTLIDSSAVQLQNWCAWLDIIAAALPQYDGVLVLHGTDTLAYTANLFALALQGL
                     DKPIVLTGSQWPYNAVGSDAPRNLATAVAAFPLGLKQTLIAFDGKLYPAVGSSKVSTE
                     TAAGFDNPHFGALAEWDETQGWHNVRIPNQDAADVSDGLKIRYPDPQAKIAVRTLIPG
                     FAVQELADGLGQLPAQALILQSYGHGNTPADEGFIRAVQDFTQQGKLLLNISQVRQGR
                     TAAVYAQGNAFRNSGIINGGKCNLETATALMTLAVSEGWGADEVKHELQRLGLV"
     gene            14861..15631
                     /locus_tag="ACFOCN_000228"
     CDS             14861..15631
                     /locus_tag="ACFOCN_000228"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6969444.1"
                     /translation="MRLTDTHCHLADSVLRGNLAQVLAEARQAGVWRFIVPATRPQDW
                     QSVAELSEMPSEHGQIRIALGIHPWFSDGIAERDCVRLETMLARYPQAWVGEIGLDFY
                     DKTQTPPQRERQIQVFVRQLAIAQTLRRRVIIHNLKATADIAAAVKQTGFAQGGIVHA
                     FSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLKKEI
                     NTPANILRIAEIAAQIRGTGAAEIAAITERNADSLLRP"
     gene            15721..16797
                     /gene="prfA"
                     /locus_tag="ACFOCN_000229"
     CDS             15721..16797
                     /gene="prfA"
                     /locus_tag="ACFOCN_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HFC6969445.1"
                     /translation="MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAE
                     LTPVVEVFQNYRLAQSDLADAEEMLSDPEMKDFAAEEIEAAKAKIGELDTELQKLLLP
                     KDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYK
                     EVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELN
                     PADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAA
                     RLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMD
                     GDLAEITDALIAEHQAELLAAMGD"
     gene            16922..17920
                     /locus_tag="ACFOCN_000230"
     CDS             16922..17920
                     /locus_tag="ACFOCN_000230"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008720 - D-lactate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0070404 - NADH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6969446.1"
                     /translation="MKIAIYGTKSYDREHFTRANRHFGFELEFFDFMLDAKTAKMAEG
                     AEAVCIFVNDDGSRPVLEKLAQIGVKTVALRCAGFNNVDLKAAEELGLKVVRVPAYSP
                     ESVAEHTVGLMLTLNRRIHKAYQRTRDANFSLEGLTGFNMYGKTAGVIGTGKIGIATM
                     RILKGFGMNLLAHDPFCNPEAEKIGGRYVDLDELYAQSDIITLHCPATPENHYMLNEA
                     AFDKMKDGVMIINTSRGGLIDSAAAIEALKRRKIGALGMDVYENERELFFEDKSNDVI
                     TDDVFRRLSSCHNVLFTGHQAFLTEEALGNISEVTLSNIREVGQTGDCGNAVRADG"
     gene            complement(17998..19293)
                     /gene="serS"
                     /locus_tag="ACFOCN_000231"
     CDS             complement(17998..19293)
                     /gene="serS"
                     /locus_tag="ACFOCN_000231"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HFC6969447.1"
                     /translation="MLDIQLLRSNTAAVAERLARRGYDFDTARFDALEERRKSVQVKT
                     EELQASRNSISKQIGALKGQGKHEEAQAAMDQVAQIKTDLEQAAADLEAVQKELDAWL
                     LSIPNLPHEDVPFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGLDFEGGAKLSG
                     ARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDL
                     FHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSEQLPLKLTAHSPCFRSEAGSYGK
                     DTRGLIRQHQFDKVEMVQIVHPEKSYEALEEMVGHAENILKALELPYRVITLCTGDMG
                     FGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARFKDENGKNRLVHTLNGSGL
                     AVGRTLVAVLENHQNADGSINIPAALQPYMGGVAKLEVK"
     gene            19458..19982
                     /locus_tag="ACFOCN_000232"
     CDS             19458..19982
                     /locus_tag="ACFOCN_000232"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HFC6969448.1"
                     /translation="MLDREGYRPNVGIILTNNRDEVFWGKRVREHSWQFPQGGIKPGE
                     SPETAMYRELYEEVGLLSQHVKIVGRTRDWLRYDVPNNWVRREWRGSYRGQKQIWYLL
                     RLTGRDCDVNLRATRHPEFDGWRWHQYWAPVDEVIDFKRDVYLGALKELSSRFLRGME
                     SYEDFAARQLSGNR"
     gene            20049..22034
                     /gene="parE"
                     /locus_tag="ACFOCN_000233"
     CDS             20049..22034
                     /gene="parE"
                     /locus_tag="ACFOCN_000233"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HFC6969449.1"
                     /translation="MAKNNQYSESSITVLKGLEPVKERPGMYTRTDSPTHICQEVIDN
                     AADEALGGFATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKF
                     NKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVG
                     KCAVKDSGTEVRVWPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEA
                     HTQTWHYPDGLKSYLTDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEE
                     GSCANESYVNLIPTPLGGTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTA
                     FVLSARVLDPQFQGQTKDKLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQ
                     AQARMRSVKKIEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKA
                     TQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAI
                     LSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYA
                     LDQNELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPE
                     GADDETRDIFVKLMGKGEAAARRAWMEREGDTAELDI"
     gene            complement(22108..22533)
                     /locus_tag="ACFOCN_000234"
     CDS             complement(22108..22533)
                     /locus_tag="ACFOCN_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ProQ/FINO family protein"
                     /protein_id="HFC6969450.1"
                     /translation="MIQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPL
                     ALGIDQDLITALPQYDPTLIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEE
                     QAIAQNHPFVQQALQQQSAQAAAETPSVEAEAAESSAAE"
     gene            complement(22625..23725)
                     /gene="aroC"
                     /locus_tag="ACFOCN_000235"
     CDS             complement(22625..23725)
                     /gene="aroC"
                     /locus_tag="ACFOCN_000235"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HFC6969451.1"
                     /translation="MAGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFD
                     LDRRKPGTSRHVTQRRETDQVEILSGVFKGKTTGTPIALLIRNTDQRSKDYGNIAQSF
                     RPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV
                     GEKEIRFEGCEHISQNPFFAANHSQIAELENYMDSVRKSLDSVGAKLHIEATNVPVGL
                     GEPVFDRLDAEIAYAMMGINAVKGVEIGAGFGSVVQRGSEHGDELTPQGFLSNHAGGI
                     LGGISTGQNICVNIAIKPTSSIATPRRSIDINGDPVELATHGRHDPCVGLRAAPIAEA
                     MLALVLIDHALRHRAQNADVQVNTPDITLSNK"
     gene            23868..24971
                     /gene="trmA"
                     /locus_tag="ACFOCN_000236"
     CDS             23868..24971
                     /gene="trmA"
                     /locus_tag="ACFOCN_000236"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HFC6969452.1"
                     /translation="MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFR
                     IWHEGGEMFYAMFEKGQKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRW
                     YAVEFLSTLSGEMLVTMIYHKRLDNEWMQAAQALQQQLDISVIGRSRGQKIVLKQDYV
                     TETLKVGNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTL
                     PLSEKFERVLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLK
                     DGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETH
                     TVERAALFDQFPFTHHIESGVLLKKKILGKSKR"
     gene            24977..26170
                     /locus_tag="ACFOCN_000237"
     CDS             24977..26170
                     /locus_tag="ACFOCN_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HFC6969453.1"
                     /translation="MYRHIEYYPGDPILSLVETFKNDPRPEKVNLSIGIYFDDEGKMP
                     VLESVSRAETARAATPVPSPYLPMEGLDTYRSAVQHLLFGKDNPALAQGRIVTVQTLG
                     GSGALKVGADFLHRWFPEACAYVSDPTWDNHRGIFESAGFEVGTYPYYDPAAVGVKFD
                     EMTAFFNTLPENSVLILHPCCHNPTGVDMSEQQWDEVLHIIKTRKLIPFMDIAYQGFG
                     GDLDSDAYAVRKAVEMELPLFVSNSFSKNLSLYGERVGGLSVVCPNKEEADLVFGQLK
                     FTVRRIYSSPPAHGAYIAADVMNSPELYALWQNEVYMMRDRIRAMRQKLYDVLTAQIP
                     DRDFTYFIKQRGMFGYTGLSVEQVRRLRDEFAVYLLDSGRMCVAGLNTSNTDYVARAF
                     AEVLK"
     gene            complement(26235..26310)
                     /locus_tag="ACFOCN_000238"
     tRNA            complement(26235..26310)
                     /locus_tag="ACFOCN_000238"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26275..26277),aa:Arg,seq:ccg)
     gene            26595..>27432
                     /locus_tag="ACFOCN_000239"
     CDS             26595..>27432
                     /locus_tag="ACFOCN_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFC6969454.1"
                     /translation="MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVD
                     ATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNG
                     DWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
                     AAPADNAASGTASAPADSAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPG
                     IPGIGKKDDWAPRIKKGKETLHKHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSG
                     AKF"
BASE COUNT         6212 a         7111 c         7751 g         6358 t
ORIGIN      
        1 tttgttagtc tactatacat tgtaacaaag cacttgatgc ggcagcacaa gccggggaag
       61 acgctgcaaa actttgccaa taggctgcgt aatatcgggg gatattggga ttttcttatt
      121 tttaaggatg gattcggggt gtttctttcc aatgaacgaa tataatttgg cggtttgttg
      181 catcaaaggc tttcagacgg catatgccgt ctgaaagcag tttatattgc atccaataat
      241 ttgtcggcgg tatggttgat ggtaaaacgg ttggcgacgc attgatgtcc tgccgttgcc
      301 agtgcgtttt tcgtttcagg gtttaagacg aggcgttcga tttcgtccgc caaagattca
      361 ggtgtcagcc tgtccagcag aatccccgat tgatgatgtt cgataatttc cttttgcgcc
      421 cccaaagtat tggaaatcac cgccgttcgg cagtacatcg cctcgcataa tgacaaaccg
      481 aatgcctccg ggacgaggct gggcaaaacc acgacatcgc tttggcggta aaacgaagca
      541 atgttttcgg taaacccttc aaaagaaaca aatggttctg ctcctgaagc agatacgtcc
      601 cgcttcaggc ggcacatata atcaggatgt ccgtgccctg ccaatttgag tctgatttga
      661 ggatatttcc gatgcaatat cacacaggct tcaattaggt tttccaatcc tttttccgga
      721 ctgatcctgc cggcgtaggc gacggtaaaa aaacggctgt cgggtttttc ttgagaggga
      781 gggaagcgat cggtatcgat accgttatga acaatccggt atttttcttt aaagggattg
      841 tcggcggttt gcacatcgta aaccagacgg gaaacgcaaa taaagcggtc ggtgtttttc
      901 tgtatcaggc ggtgataaaa atcagttttg ttggcgacaa cattatgttt gacaaatatc
      961 aggcgcaccc cggtcagttt tttcaaaagt atggataagg cggcaatttt gccggtgtgt
     1021 atcatcaggt gggaaatgcg gtttttccgg ataaagcggg taagtgcgta gagcgaaaac
     1081 agcccgttga gcgtgtgaag gcgcgttgtg aaaacggaag aaacttcgga aaatcgcctg
     1141 tgcatcaatt cattattttt attgacggcg gtaaacattg tgcagtcccg aagccccaat
     1201 gcttttgaaa catcatagac atattgttcg cctccacccc aaatcttggc cgatacgata
     1261 tttaatatcc tgaattcttt ttccatttaa aattttccgc cggatttgta cagataatat
     1321 agtttgacat atttaatcat cgtgtaatag ctgtggttga cggacataat ccaacccatt
     1381 tttccatcaa gaaacccttt gttcaggata taaattttga aaaaccccca aatcgggcgg
     1441 aggataatgt ccctaacgaa acgcacgggc tttccctgct ctcggtattt tttggctgaa
     1501 atggaagtat atttgttgaa cttgttgaaa tattgttccc agttgtcgta cgtgtaatgg
     1561 tacataaaat gcttcagacg gcgtttgggg tagggggttt gtacggtttc gtgtactttg
     1621 ccttgcaccg aactgtcttt tttcggcatc agacggcata cgctgtcggg acgcatcgcg
     1681 ccgtgtgtgg cgggatggtt ggggaaaagg ttgcggcgtt cgacaaaata ggcggcataa
     1741 tcgccggttt ggacaatttt tgagatttca tcagatagtt ccggcgtgca gcgttcgtct
     1801 gcatcaatca ggaaaaccca ttctccgcct gcctgttcga tggcaaatgt tttttgcgct
     1861 ccgaaatccc cattcaaatg ccgtctgaag acttttgcgc ccaaaccctc ggcaatttcg
     1921 gcagtattgt cggtgctgta gtcgtcgata acgatgactt ctttatcgaa acggcaactt
     1981 tcaatacatt cctgaatgtg gtttgcttcg tttttggcaa caatcaatac gctgactttt
     2041 ttcattatca aggtttctca aagcattttg gtttcacagg gcggcaaaaa agcccaaaca
     2101 tacgtccggg cttgggaatt ggtgggtccg gtggggttcg aacccacgac caagggatta
     2161 tgagtcccct gctctaaccc ctgagctaca gacccgtcaa gagtaggcgc gtattgtata
     2221 gcatagtggt gggattgaca aacttatttc atccgatgat taagacgcag ttgcttcctc
     2281 cgaaggcaaa cgacgagctg gcggcaatgt gtttttccgt tgtctagaag ctgccgctgc
     2341 cggtcaggtt aatggcgggc aggtcggggt cgttctgccc gtcccaaagc tggggcggaa
     2401 gttttccttc gggattgctt tgccggtcgg caaagcccca cgcgaacgcg gcttcgattg
     2461 cgcccgccgc acccagcgtg tgtccggttt gcggcttggt ggacgtgcag ggcgtattgt
     2521 tgccgaaaac cgctgcaacg gcacggcttt ccatactgtc gttgtggtgc gtcccggtgc
     2581 cgtgcagatt aatccagccg atgtcttcgg gcgcaagacc tgcgtgttgc aatgccgtct
     2641 gaaaggcaag gattgcgcct tgcgcgtcgg ggcggggcgt ggaaatatgg taggcatcgc
     2701 tgttggctcc gtagccgacg agttcggcgt aaattatcgc accgcgccgt ttggcgtgtt
     2761 ccaattcttc cagcacgaaa atccccgcgc cttcgccgat gaccagcccg tcgcggttcg
     2821 cgtcgtatgg gcgcggggtt ttttccggtt cgccgttgcg gcggctggcg gcataaagcg
     2881 agtcgaaaac atacacttcg gacgggaaaa attcttcgcc tccgcccgcc agcatcatat
     2941 cggtcagacc gtatttgatg gcttcgtagg cataacctat gccttggctg ccggacgaac
     3001 acgcgctcga tgtcgggatg atgcgtcctt tcagtccgaa aaagatgccg atattggcgg
     3061 cggcggtgta cggcatcata cgcacatagg tgttggcact gaagttgcgc gacatgccgg
     3121 tcagcaacaa ttcgcctaca tcgccgatgt ctttggtgct gccgctggaa gagccgcagg
     3181 caacgcccat ccgtccgtcg gtaatgcttt cgtccccgag caaaccggca tccgtcaaag
     3241 cctgctccgc cgcatcgacg cacaaatacg acacacgccc catacttctg agctgcttgc
     3301 gcgtccaatg tttcggcggc gcgtaatcct caatcggcgc acccagttgc gcttccaatt
     3361 cggggaaacg ttcgtgccaa tccactatat tttcgcaaga cgcgttttgc ctgattccaa
     3421 aagttctcaa tgccgttaat gtggttttga cggtctgcaa attccttgga atggttgatg
     3481 cggtaatgga taaaactgct cacgtccaac ttgtcgcagc tgctcagact atcggtataa
     3541 acaatactgt ccggcatgat tttctttttg atgacaggga gtaacgtttc agacttggca
     3601 ttgtttacga caacggtata gacccgtccg ttgcgtttca gaatgccgaa aacaaccact
     3661 tttcctgccg caccgcgacc acgtctgcct ttacgccgtc cgccgaaatc gctttcgtcc
     3721 ggctcgacag gatcctcaaa aacctcatcg gcagccaagg ccaaatgatg gttgataacc
     3781 gtgcggattt tacggtagaa cagtgctgcc gaattgggat ggatacccaa aatatcggcg
     3841 gcagaacggg cggtaacttc cagcacaaaa aacggagcag ttctttctgt acttttttct
     3901 ttcatttgca gtgtgttatc ttcatatttc gagggtaaca tatctgctaa tctagtacag
     3961 cccctaaaat ttaatccact atagtttatg cctcgcacga cggggaaatg gcgcgcagtt
     4021 tcgatttgtg gttggaactg ttgaaatcgc aaaccgtgtc gccgacttcg ttcggtttgt
     4081 cggtgcacaa tgcaacggcg gggtaatggt cgatattgag gcgggatatg agcgagcaga
     4141 cggcattggc cgtgtgtgcc gacggtgtgg aaacggcatt ggcggaagcg gcatcactgt
     4201 tggaagaggg atgcgggtcg gttttggttt tggcggcgga cgatccgctg ccggaaggat
     4261 atgccgtatc ggcaacgcgc gcgccgtttg cttatgcttt ggcgatggtt ctgaccaaag
     4321 ggacgcgtta cagcctgact ttatctgctt cggacgatat gccgtctgaa gccggtatgc
     4381 tgcccgaggc atattggagc ggtttggaat gggtgcgctt tctgctgaac ggcagtcggg
     4441 aatgccgccg ggtatatcgc aatcgtgaat ggctgtggca gcccgcaagc tgcaggctga
     4501 agatttccgc aatgtccgca ccgtcaacga cgtggtacag gcggtattga agattcaggc
     4561 gggctaatcg ggtatttcta attatttttc agacggcatg tttttatcgg atgccgtctg
     4621 aaaacatttg tgcggattca aaatgaaacc cggttttttc ggacatattt ttctgaccgt
     4681 attaagcatt gcctatcccg ctttgtggta tagtggatta acaaaaatca ggacaaggcg
     4741 acgaagccgc agacagtacg gcaaggcgag gcaacgctgt actggttttt gttaatccac
     4801 tatattacgg cagggaggcg ggctggtttg tctggctggc ggcggcgatg tgcgggttgt
     4861 ggctgctgcg cgccctgact gccaaactgc cccaacagcg ttatgcggct ttgtttatta
     4921 cactgttttt tgccgcagta ttggtgttcg ggcggcatga ttcgatgtat tggtatcccg
     4981 tcctcgtcaa tctgatgatg ttggcggtgt tcggcggcag cctgtttgcc gggcagacgg
     5041 tgattgaaaa acttgcgcgg ctgcaacagc ccgacctgcc tgaaaaagct gtgcgctata
     5101 cccgccgggt aacgcaggtt tggtgcgtat tctttattgc caacgggacg cttgccgctt
     5161 tgttggcacg gttggggcga tatgattggt gggcggttta taccggcgtg attgcctatg
     5221 tattgatggg gatgccgttt gccggcgaat ggctttaccg caaactcgtt ttgaaagtct
     5281 gaaaccttat gtacacttgc acttcctgcg gcgaaaaaca tgaagatatg cccgcaatcg
     5341 gctttaccgc cccctatccc tataatcaac tcagtgaaga agaacgcatt gcttaccaag
     5401 ctgaatgcgg cggcgatttc tgcatcatcc gctatcccga ccaaaccgac cgttttatcc
     5461 gcgcggtgct gcttattccg attatcgggc atgaggaaac gctggaatac ggcgtgtggg
     5521 tgtccgtcag cgaaaagagt tttaacgact atcaaagcca ctttcacgac aatccggaaa
     5581 atgtcgttta tttcgggatg atctgcaacc ggctgccccc ttatgaaacc gacaccttcg
     5641 gtttgcattg caatgtcgtt acccaacccg atggtcaacg tcctttgttg caactccatc
     5701 aaggcagcga acatccgctg gtacgcgact tttatcacgg catagaatat gccgaagcgc
     5761 aggcaaggat aggggcggta tccgaatcgg attgctcagg ataaaaggac aaaaaggatg
     5821 aatatgaaat acaaagacct gcgcgacttc atcgccatgc tcgagcagca gggcaaactc
     5881 aaacgcatcg cgcaccccgt ttccccgcat ttggaaatga ccgaaatcgc cgaccgcgtg
     5941 ctgcgcgccg aagggccggc gttgctgttt gaaaacccgg ttaagcccga cggtacgcgc
     6001 tacggttatc ctgtgttggc aaacctgttc ggcacgcccg aacgtgtggc gatgggcatg
     6061 ggcgcggaca gcgtgtccaa gctgcgtgaa atcgggcaga cgctggcgta tttgaaagaa
     6121 cccgaaccgc ccaaaggcat caaagatgcg ttttccaaac tgccgctact gaaagacatt
     6181 tggagcatgg cgccgaacgt ggtgaaaaac gcgccgtgtc aggaaatcgt gtgggaaggc
     6241 gaaaacgttg atttgtataa acttccgatt cagcattgct ggccggaaga cgttgcgccg
     6301 ctggtaacat ggggcttgac cgtaacgcgc gggccgcaca aaaaacgcca aaatctcggc
     6361 atttaccgcc aacaactcat cggcaaaaac aagctgatta tgcgctggct gtcgcatcgc
     6421 ggcggcgcgt tggattatca ggagttccgc aaactcaatc ccgatacgcc gtatcccgtc
     6481 gccgtcgtgc tcggttgcga ccctgccact attctcggag cggtaacgcc tgttcccgat
     6541 actttgagcg aataccagtt tgccggactg ctgcgcggtt cgcggacgga gctggtgaaa
     6601 tgtatcggca acgatttgca agtgcctgcc cgtgctgaaa ttgtattgga aggcgtgatt
     6661 catccgaacg aaaccgcgtt ggaaggccca tacggcgacc acaccggcta ttacaacgag
     6721 caggatcatt tccctgtatt tacggtcgag cgcatcacca tgcgcgaaaa cccgatttac
     6781 cattcgacct acacaggcaa acctcccgat gaacccgctg ttttgggcgt ggcattgaac
     6841 gaagtgttcg taccgctctt gcaaaagcag ttccccgaaa tcaccgattt ttacctgccg
     6901 cccgaaggct gctcctaccg catggcggtg gtgagcatga aaaaacagta cgccggacac
     6961 gccaagcgcg tgatgatggg ctgctggtcg ttcctgcgcc agtttatgta caccaaattc
     7021 atcatcgtgg tggatgacga tgtgaacgta cgcgactgga aagaagtcat ctgggcggtc
     7081 accacgcgca tggaccccgt gcgcgacact gttttggtag aaaacacgcc catcgattat
     7141 ctcgacttcg ccagccccgt cagcggactc ggcggcaaaa tgggtttgga tgcgaccaac
     7201 aaatggccgg gcgaaaccga ccgcgaatgg ggacgcgtca tcaaaaaaga ccctgcggtt
     7261 acggctaaga ttgatgggat ttgggaggaa ttggggttgt aggttttacg gtcatgccgt
     7321 ctgaagcgcg ggggtgtttc agacggcatt tttgtacgca ggatgtttac ggttctttag
     7381 gtttgagcca ctgccattgt tccagcaggg tgtcttcgag gattttctgt ttctctttgc
     7441 gcgaattgat gccgccggtc agcctgccgt aatcgacggt aatggacggc ttgtccaccg
     7501 taccggtgat tttcagggga atcggtttgt ttttcggatg gacggcgttg cggataagga
     7561 catcttcaga caattcctgc gtatccagat tggtatagcc gttgctggta acatagaggc
     7621 tgtcggagaa gagttcggta tcgatgtggc ggctgatgcc gtctgaaatt tcgctgttga
     7681 gcgtgaatcg gtggaagggt gtgctgggtg cggcattgtc ggcagttttg cccgaaatgc
     7741 cgtttttcag gatattgtcc atgtcgatac cgtgccatgc gccattggaa atattcagcg
     7801 acaggctgcc ttgaagcgag cggataagct cttttcgggt ttcgccgccc gcggtcaggt
     7861 cgatgaccgc gtcgccgttg ccgctgaagc tgtggaagcc gaacaggtct tgcagcagcg
     7921 gttggatttg gatgttgctt gcattctgtt gcaggcggta agtggcggga cgggtgttgg
     7981 cgatgctgat gccgccttcg gtatggccgc cgtaaagccc tgacttgaaa cggctgagcg
     8041 cgatatggcc tttgtcggcg tggaggtagg tttccatatc gtccagttgc aggccgggaa
     8101 gttggacttt tccgattttc aggtgcgcct cgatgtcgcc ggacagcttg gcgagggtgt
     8161 cgggaaatat tttgccgttt tgttgccgca cgtcgtcaag atagggggtc aggttcaatt
     8221 tttgcagtgc gacggcggct tccagatgcg gtgcgtcttc atgtgtgtat ctgaatttcg
     8281 cggcaacggt ttggcggtcg aatgtgccgt ttaattcggc attccaattt tgcagattcg
     8341 gtacggacag cgaaccgtcg agccggctga tgaaacgggg ttgcggcagg cggttgacgg
     8401 tatcctgaag ggtcgataca tacaggcgcg gcgcgtccag ccctttgttt tccgtccata
     8461 cgagcggcga attgagggag aagttggtct ggtggcgcgg tgttttgaag ctgccggaga
     8521 tttcggcgtt gccgatgttg gcgatgccgg agtgcaggtt ggctttgtcg agtttgaacg
     8581 aaccgtccca ttgggcatat tcgccgccgg cggtaaatgc gccgttgacg gtttcaattt
     8641 taatgctgtt gttcctgagt gccagcgtag ggatttgggc ggtcaggtgg aggttgcgga
     8701 aggaagtgtc tgcacgcagg ccgaggccgg cggcatccgc tccgccggcg ttgaagcgga
     8761 cagaagggct gccggtggtg gaaatggtaa tgccgtgtcc gtccagcgaa gtggaagctt
     8821 caaaatggaa cggtgagatt ttgggcgtgc cgatgccgtc tgaaaggaac agccccctgc
     8881 ttttccacgg gacggacagc tttccccaaa ccagtatgcc cgaactttca aacggctgcc
     8941 ccgacgaatc gggggattgc aggttgaggt tgatttcctt caggataagc tgttcctgca
     9001 ggaaattgag gcggacggtg ctgttttcga cgataatgcg gttgactgag gcttggcgtt
     9061 tttggctgtc gatcaggtct tggatgttcc aaacaccttt cccgtcgcgc gtcagggcaa
     9121 gttccgcact cgaaaccacc catttttcaa tctgtatctg atccgaccac aggtttttcc
     9181 agctcaatcc gattttggtt tcttggacgg aaacggcagt ctggtcgccg ccgggttcgg
     9241 taatggtcag gtttttcagg atgacggtcg gccggggcag gagcctgcgc tgaatgtccg
     9301 catcaaacga gattttccgg tgtgtgtgtg caatgctttg ttggaggcgg ctgcggatgt
     9361 tttcaggcgt gaaggtgcga tatacggaag cgtgcagccc gactgccgcc aaaagcagta
     9421 tcgtcagcac ggccaccgca tatttcagac ggtatttgtg gaaaaccgat aataaatcca
     9481 tagcccgaac aatctgtaaa acacgccaca gtataacacg gcttgcaaaa atcctatttt
     9541 gggcaggccg tttcttgtgt caggaggaaa tatgattatt gtcatgagca ggcgtgccgc
     9601 cgaagcggac attgccggcg ttgtcgcctt tatccgcagc agaggtctgc gagaacacat
     9661 ttctcacggc gacgagcgta ccgtcatcgg cgcaatcggc gacgataggg ttttgagcgt
     9721 cagggaggtg cagacgctgc cggaggtcga gaaagccgtc cgcattttgg atacatggaa
     9781 aaccgtcagt cgggaaaatc gggcggaaga cagccgcgtt gccgccaaag gcgtggcttt
     9841 cggcggcggg gaaaccgtcc gtatcgccgc agaaccgtca gtatggcgca atgcggatgc
     9901 agtgtttctg gatccgtttt tcacttcggc aaacttatac gacacttcaa gtgcggatga
     9961 aaggcgggga cggtgcagac ggttggcgga acagaccgca tcggcgcatg gcgcagggaa
    10021 acccgtattg gtgcgcgtcc gcaacgtccg ccatgtcgaa gcggctttga atgcgggggc
    10081 ggacatcctg tatttgggcg gcgggctgat gtccgatctt gccgtattga atgaagccgg
    10141 aaacctgaac attcccttgg tgctgtgtaa agacaagcac cattctgccg aagattggtt
    10201 gaatgccgca gaatatgtcg tctcgcgcgg caaccgccac ctgattctgg gcgagtcggg
    10261 cgtattgaac cataccaaag gccatcccta ccgtttggat gtcgaatcca tcgtgaaagt
    10321 ccgccaaatc agccatctgc ccgtgattgc gaatattacg ggattatgga accgcgatat
    10381 gccgcaggaa atcctgtacg gcttggcaaa ggcggcaggc gcgtgcggaa tcgtcggaac
    10441 ctgttttgaa aagtcgggcg gatagcaggc ataccggcag attcaaaggc ggagcagaca
    10501 ttcggacaac atgccgtctg ccgcccgaat agcggtgccg tctgaagcgc acaagacggt
    10561 ttcagacggc atataatctg ttttttattt tgggaggagt tcagatggca cgacacgttt
    10621 ggcaggcagg acggtttgaa atcggtttgg acaaaccgaa aatcatgggc atcgtgaatc
    10681 tcacacccga ttctttttcc gacggcggcg tgtattcgca aaacgcccaa acagccttgg
    10741 cacatgccga acagcttcta aaagaaggcg cagacattct cgacatcggc ggcgaatcga
    10801 cgcggtcggg tgcggattat gtttcgcctg aagaagaatg ggcgcgggtt gagcctgttt
    10861 tggcggaagt ggcggggtgg ggcgttccca tcagtttgga cacgcgccgc acggtgatta
    10921 tggaaaaagc gttggcactc ggcggcatcg atattattaa tgatgtggcg gcgttgaatg
    10981 acgagggcgc ggtcgaattg ctggcgcgtc aggcggacac gggcatttgc ctgatgcaca
    11041 tgcagggttt gcccaaaacc atgcagatta atccgaaata tcaagatgtt gtcggtgaag
    11101 tagcgcggta tttgaaagcg cgctcagcgg aatgtatcgc ggcaggcatc gcaccgcaac
    11161 gcatcatact cgaccccggc ttcggctccg gcttcggcaa acccttgcaa cacaatatcg
    11221 cgctgatgcg gcatttgccc gaattgatgg cggaaacagg ttttccgctg ctcatcggcg
    11281 tatcgcgcaa aagcacgata ggcgagctga ccggcgaggc aaatgcggcg gaacgcgtac
    11341 acggcagcgt ggcggcagcg ttggcttccg tagcgcgcgg cgcgcaaatc gtgcgggtgc
    11401 atgatgtgaa ggcgacagcg gatgcgttga aggtgtggga agcgttgggc atcaatctgt
    11461 aaacagcggt tcacatactt catgccgtct gaaaaggacg gggcggtttc agacggcatc
    11521 aacggtgcag acagcaaggc acaaactgac tgtataatct cggacaacgg ttcacattct
    11581 cggagcaaca catggcaaaa aaatatttcg gcacggacgg cgtgcgcggc gaagtggggc
    11641 aatttccgat tacgcccgat ttcgtattga aactcggcta tgcggcgggg caggttttgg
    11701 tgcagcacga caccgaccag aaaccgaccg tcctcatcgg caaagacacg cgcatttccg
    11761 gctatatgct ggaagccgct ttggtggccg gttttacggc ggcgggtgtg aatgtggtac
    11821 agaccggacc gctgcccacg cccggcgtgg cttatctgac ccgcgcgttg cgcctgtccg
    11881 ccggcgtgat gatttccgcg tcgcacaacg cctattccga caacggcatc aaattcttcg
    11941 ccgaaggcgg cgtgaaactt tccgatgaag tcgagttgga aatcgaagcc aaaatcgacg
    12001 gcgaaatgaa aacccaaccg tccgcccgtc tcggtcgcgc acgccgcatc agcggtgcgg
    12061 acgaccgcta tatcgaattt tgcaaatcca cctttcccag ccattccgac cttcggggtt
    12121 tgaagttggt tgtcgatacc gccaacggcg cggggtacgg tgtcgccccc aaggtgtttc
    12181 acgaactggg cgcacaggtc gtcagcatcg gcaacgaacc caacggctac aacatcaacg
    12241 aaaaatgcgg tgcgacttat accaagacac tccaggccgc cgttttacag catgaagccg
    12301 actacggcat cgccttagac ggcgacggcg accgcctgat gatggtcgat aaaaacgggc
    12361 aggtttacga cggcgacagc ctgatttacg tcattgccaa agcccgcgcc cgagaaggta
    12421 tcaacatcgg cggcgtggtc ggcacggtca tgaccaatat ggcgatggaa atcgccctga
    12481 aagagcaggg cgtggatttc tgccgcgcca aagtcggcga ccgctatgtg ttggaacagc
    12541 tgaaccaacg cggctggctc atcggcggcg aagccagcgg ccatattttg tgtatggaca
    12601 aacacaacac cggcgacggc attatttccg cgctgcaagt tttggcggca ctgcaaacgc
    12661 tgaaccaaga cctcgccacc gtttgcgccg attggcagcc gtatccgcaa acgatgatta
    12721 acgtgcgcat ccaaaaaggt cagcaatggc aggaagcttc gaaagacgtg ttggcggaag
    12781 tggaaaaaga actcgaaggc aaagggcgtg tcgtgttgcg cgcttcggga accgaacccg
    12841 tcgtgcgcgt gatggtggag gcgcggcagg cggattgggc gcgcgaaggg gcggaacgca
    12901 ttgccgccgc catcggcggc atttaggcaa aatcaggcaa aaccgttttt agaaccggcc
    12961 ggttttctgt ttaaatgccg tctgaacatg cggaggatgc gcgaatctgc cttttttccg
    13021 ctttcagacg gcataatctt tgatagaatg ccgtttcgcg cagaaaatgt ttcggcttgt
    13081 tctgactttt tatctccgac aatggaatat ccgctatgtt tgcccttttg gaagcctttt
    13141 ttgtcgaata cggctatgcg gccgtgtttt tcgttttggt catctgcggt ttcggcgtgc
    13201 cgattcccga ggatttgacc ttggtaacag gcggcgtgat ttcgggtatg ggttatacca
    13261 atccgcatat tatgtttgca gtcggtatgc tcggcgtatt ggtcggggac ggcatcatgt
    13321 tcgccgccgg acgcatctgg gggcagaaaa tcctcaagtt caaaccgatt gcgcgcatca
    13381 tgacgccgaa acgttacgca caggttcagg aaaaattcga caaatacggc aactgggttc
    13441 tgtttgtcgc tcgtttcctg ccgggtttgc ggactgccgt tttcgttacc gccggcatca
    13501 gccgcaaagt atcgtatctg cgctttctga ttatggacgg gcttgccgcg ctgatttccg
    13561 tgcccgtttg gatttacttg ggcgagtacg gcgcgcacaa catcgattgg ctgatggcga
    13621 aaatgcacag cctgcaatcc ggcatcttca tcgcattggg cgtgctggcg gcggcgctgg
    13681 cgtggttctg gtggcgcaaa cgccgacatt atcagcttta ccgcgcacaa ttgagcgaaa
    13741 aacgcgccaa acgcaaggcg gaaaaggcag cgaaaaaagc ggcacagaag cagcagtaaa
    13801 tcagattttc gaccgtccgg acgcatttcg cgtttcaggc ggtctttgca ttttcaggat
    13861 gagccatgaa acagaaaatt tttgtccttt ataccggcgg caccatcggc atgacgcaaa
    13921 gcagcgaagg cctgcgcccc gataccgcgc tggtcgggca ggcactcgcg ccgttttcaa
    13981 acggcatgga tttcgattgg cacgtttgtg ggacgctgat tgattcttcc gccgtccaac
    14041 tgcaaaactg gtgcgcttgg ctggacatca ttgccgccgc gctgccgcag tacgacggcg
    14101 ttttggtgct gcacggtacg gacacgctcg cctataccgc caatctgttc gccctcgcgc
    14161 tgcagggttt ggacaagcca atcgtcctga ccggttccca atggccgtac aacgccgtgg
    14221 gcagcgacgc gccgcgcaat ctggcgactg ccgttgccgc attcccactc ggattgaagc
    14281 agacgcttat tgcctttgac ggcaaacttt atcccgccgt cggcagcagc aaagtcagca
    14341 ccgaaaccgc cgccggtttc gacaatccgc atttcggcgc actggcggag tgggacgaaa
    14401 cccagggctg gcacaatgtc cgcatcccga atcaggacgc ggcagatgtt tcagacggcc
    14461 tcaaaatccg ttatcccgac ccgcaggcaa aaatcgccgt ccgcacgctt atccccggct
    14521 ttgccgtcca agaacttgcc gacggactcg gacagcttcc cgcccaagcc cttatcctgc
    14581 aaagctacgg acacggcaac acgcccgcag acgaaggttt catccgcgcc gtgcaagact
    14641 ttacgcagca aggcaaactg ctgctcaaca tcagccaagt ccgacaaggc agaaccgctg
    14701 ccgtttacgc gcaaggcaac gcgttccgca actcaggcat catcaacggc ggcaaatgca
    14761 atttggaaac cgcaaccgca ttgatgacgc ttgccgtttc tgaaggatgg ggcgcggacg
    14821 aggtgaaaca cgagttgcag cggttggggc tggtgtgaag atgaggctga ccgacacaca
    14881 ttgccatctt gccgattctg ttttgcgcgg caatctggcg caggtgcttg ccgaagcgcg
    14941 acaggcgggt gtgtggcggt ttatcgttcc cgcgacgcgc ccgcaggatt ggcaaagcgt
    15001 ggcggaactg tcggaaatgc cgtccgaaca cggtcaaatc cgtattgcgc tcggcatcca
    15061 tccttggttt tcagacggca ttgccgagcg tgattgcgtc cgcctggaaa cgatgttggc
    15121 acgttatccg caggcatggg tcggcgaaat cggcttggat ttttacgaca aaacccaaac
    15181 gccgccgcag cgcgaacggc aaatccaagt tttcgtccgc cagcttgcca tcgcgcaaac
    15241 cctgcgccgc cgcgtgatta tccataatct caaagccacc gccgacatcg ccgccgccgt
    15301 caaacagaca ggctttgccc aaggcggcat cgttcacgcc ttctcaggca gcgcggaaga
    15361 agcgcgcgtg ttgacgaaac tgggtttcaa aatcggcatc ggttcgttgt tgctcaatcc
    15421 gaacgcgcgt aaagtgcgcg atacgcttaa agccttgaac gacggggatt tcgtattgga
    15481 aaccgacagc ccgtttatgc tgaaaaaaga gattaatacg cctgccaaca ttcttcggat
    15541 tgccgaaatt gccgcgcaga tacgcggtac cggcgcggcg gaaatcgccg cgataacgga
    15601 acgcaatgcc gacagcctgc tccgtcccta gattatcttt ttgaatattc agaaaatata
    15661 ttataatgac cgcggtttga tgccgtctga aattcaggcg gcgtttgtta tggaagaatt
    15721 atgaagccgt ctatcttaga aaaactgcaa caactcggcg accggttgga agaagttacc
    15781 caccttttag ggcaacccga agccacatcc gatatggaca actaccgcaa gctcacgcgc
    15841 gaacacgccg aactgacccc cgtcgtcgaa gtattccaaa actatcggct tgcccaaagc
    15901 gacttggcag atgccgaaga aatgctgtcc gaccccgaaa tgaaagattt tgccgccgaa
    15961 gaaatcgaag cggccaaagc caaaatcggc gaactcgata ccgaactgca aaaactgctg
    16021 ctgcccaaag atgccgacga cgacaaaaac atcttcatcg aaatacgcgc cggaacgggc
    16081 ggcgacgaag ccgcgctgtt tgccggcgat ttgctgcgta tgtacagccg ctacgccgag
    16141 cgcaaccgtt ggcaggttga aatcgtgtcc gccaacgaaa gcgaattggg cggctataaa
    16201 gaagtcatcg cccgtattgt cggactcggg gcgtacagcc gtttgaaatt tgaatcgggc
    16261 ggacaccgcg tgcagcgcgt ccccgccacc gaaagccaag gccgcatcca cacctccgcc
    16321 tgcaccgttg ccgtcatgcc cgaagcggac gaactggaag acatcgaact gaacccagcc
    16381 gaccttcgca tcgacacctt tcgcgcatcc ggcgcgggcg ggcagcacat caataaaacc
    16441 gattccgccg tccgcatcac ccacctgccc acaggcatgg tggtcgaatg ccaagacgga
    16501 cgcagccaac acgccaacaa agcgcaggcg atgaaagtcc tcgccgcccg cctgaacgac
    16561 gcgcaaaaac gcgaagccca agccaaagaa gccgccgaac gcaaatccct catcggcagc
    16621 ggcgaccgca gcgaacgcat ccgcacctac aactatcccc aaggcagggt aacagaccac
    16681 cgcatcaacc tcaccctgca caagctggat tttgtgatgg acggcgattt ggcagaaatc
    16741 accgatgccc tgattgccga acatcaggcg gagcttttgg cggcaatggg cgattgagtt
    16801 ttgtgttttg aaatggaaat gccgtgcatg caatcaattt taatctgcca tattctactg
    16861 atttgtttga attcagtgta ttatgccgtt tctcaaccat aggcgacaac tggacatatt
    16921 gatgaagatt gcgatttacg gtacgaaaag ctatgaccgc gaacatttta cccgcgccaa
    16981 ccggcatttc ggcttcgagc tggagttttt tgattttatg ctggatgcga aaacggcgaa
    17041 aatggcggaa ggcgcggaag cggtttgtat ttttgtaaac gacgacggca gccggcccgt
    17101 gttggaaaaa ttggcgcaaa ttggcgtgaa aactgtggcg ttgcgttgtg ccggcttcaa
    17161 taatgtggat ttaaaggcgg ctgaagagtt gggcttgaaa gtcgtgcgcg tgcctgccta
    17221 ttcgcccgaa tcggttgcgg aacatacggt cggtctgatg ctgactttga accgccgtat
    17281 ccacaaagcc tatcagcgta cccgcgatgc gaatttttcg ctggaaggtc tgaccggttt
    17341 caatatgtac ggcaaaacgg cgggcgttat cggcacgggg aaaatcggta ttgcaaccat
    17401 gcggatttta aagggtttcg gcatgaacct gctggctcac gatccgtttt gcaaccccga
    17461 agcggaaaaa atcggcggca ggtatgtgga tttggacgag ctgtatgccc agtcggacat
    17521 catcacgctg cattgccccg ccacgccgga aaaccactat atgctgaacg aagcggcgtt
    17581 cgacaaaatg aaagacggcg tgatgattat caacaccagc cggggcgggc tgattgacag
    17641 tgccgccgcg attgaggcgt tgaaacgccg gaaaatcggc gcattgggca tggatgtgta
    17701 cgagaacgag cgcgagctgt tttttgaaga caaatccaac gatgtgatta ccgacgacgt
    17761 gttccgccgg ttgtcgtcct gccataacgt gctgtttacc ggtcatcagg cgtttttgac
    17821 ggaagaggcg ttgggtaata tttcggaagt tacgctgtcc aatatccgcg aggtcggaca
    17881 gaccggcgat tgcggcaatg cggttcgtgc cgacggctga cgtgttttaa aagtttaaag
    17941 gaaatgccgt ctgaaccagg tttcagacgg catttgacgt tcaggcagct tgcaaactta
    18001 tttcacttcc aacttggcaa cgccgcccat atacggttgc agtgcggcag ggatgttgat
    18061 gctgccgtcg gcgttttgat ggttttccaa tacggcgacc agcgttctgc cgacagccaa
    18121 gccggagccg ttcaaagtat gtaccaagcg gtttttgccg ttttcgtctt tgaaacgcgc
    18181 cttcatgcgg cgggcttgga aatcttcgca gttggagcag cttgagattt cgcggtaggt
    18241 attttgcgcg ggaacccaaa cttccaagtc atacgttttg gttgcgccga agcccatgtc
    18301 gccggtacac agggtaatca cgcggtaggg cagttccaaa gccttcagga tgttttcggc
    18361 atggccgacc atttcttcca gtgcttcgta tgatttttcg ggatgaacga tttgtaccat
    18421 ttctactttg tcgaactggt gctggcgaat cagaccgcgc gtgtctttgc cgtacgaacc
    18481 cgcctcgctg cggaaacagg gcgaatgcgc ggtcagcttc agcggcagtt gttcggacgg
    18541 gataatgctg tcggcaacgg tattggtcag ggtaacttcg gctgtcggaa tcaggtattg
    18601 ggtggttttg gtttcgtcgc cgccacgggt aacgtggaac agatcttccg caaattttgg
    18661 tagttggccc gtaccttgca gcgtcgtatc gtcaacgata taaggcgtgt aatgctcggt
    18721 gtagccgtgt tgcagcgtgt gcgtatccag catgaactgt gccaaggcgc ggtgcagacg
    18781 ggcgatttgt ccgcgcatca cggtaaatcg tgcgccggaa agtttcgcgc caccttcgaa
    18841 atccaaaccc aaaggttcgc ccaaatcgac atggtctttg atttcaaagt caaattcgcg
    18901 cggggtgccg actttgcgga cttcgacgtt ttcggtttca tccttaccga aaggcacgtc
    18961 ctcatgcggc aggttcggaa tgctcaacag ccatgcgtcc agttcctttt gcacggcttc
    19021 caaatcggcg gctgcctgtt ccaaatcggt tttgatttgg gcgacttgat ccatggccgc
    19081 ctgtgcctct tcgtgtttgc cctgaccttt cagtgcgccg atttgcttgg aaatgctgtt
    19141 acgcgaggct tgtaattctt cggttttcac ctgaacggac ttgcgtcgtt cttccagtgc
    19201 gtcaaaacgt gcggtatcaa agtcataacc gcgccgtgca agccgttcgg caacggcggc
    19261 ggtgttgctg cggagcaatt ggatgtctaa catggtctga ttcccgaata atttgaaaca
    19321 cattattgta aaccaaattt aagatatttt cccgagtccg tctgtgtttc gacatgcttg
    19381 aaccataccg tctgatttgt caaaaccgtt cgatttgtgg gaaaatccca agattgaatt
    19441 taacggaggg cgacaccgtg ttggacaggg aaggctatcg ccccaatgtc ggtatcatct
    19501 taaccaacaa ccgcgacgaa gtcttttggg gtaagcgcgt gcgcgaacat tcttggcagt
    19561 ttccgcaagg cggcatcaag ccgggcgaaa gccccgaaac cgcgatgtac cgcgagcttt
    19621 acgaagaagt cggacttctg tcgcaacacg tcaaaatcgt cgggcggacg cgcgactggc
    19681 tgcgttacga cgtgccgaac aactgggtac gccgcgaatg gcgcggctct tatcgcgggc
    19741 agaagcagat ttggtatctc ctgcgcctga ccggccggga ttgcgatgtc aacctgcgcg
    19801 ccacccgcca ccccgaattt gacggctggc gttggcacca atattgggcg cccgttgacg
    19861 aagtgattga tttcaaacgc gacgtttatt tgggggcatt gaaagaactt tcttcccgct
    19921 tcctgcgcgg tatggaaagt tatgaagact ttgccgcccg ccaactttcc ggcaaccggt
    19981 aaaacaacgg aacgcaacgc tttcaggccg tctgaaagcg ttgtttttct tactttcaga
    20041 ttattcctat ggctaaaaac aaccaataca gcgaatccag catcaccgtc ctcaaaggtt
    20101 tggaaccggt caaagaacgt cccggtatgt acacccgcac cgacagcccg acccatatct
    20161 gccaagaagt catcgacaac gcggcggacg aggcgttggg cggtttcgct acggcaatcg
    20221 acgtgcaaat tcatgaagac ggttcgcttt ccgtacgcga caacggccgc ggtattcccg
    20281 tcggtctgca ccctgaagaa ggcgtacccg tagtcgaact cgtgttcacc cgtctgcacg
    20341 cgggcggcaa gttcaacaaa aaagacggcg gcagcgcgta tgccttttca ggcggcctgc
    20401 acggcgtggg cgtatccgtg accaacgccc tttccacccg ccttgaggta acggtcaaac
    20461 gcgaaggcaa aatccaccgc atcgtgtttg ccggcggcga cgtggtcgaa ccgttggcac
    20521 aagtgggcaa atgcgccgtc aaagacagcg gcaccgaagt gcgcgtctgg ccggacggca
    20581 aatattttga aagcccgaat tacagcatcc ccgaactcga acgcctgctg cgcgccaaag
    20641 ccgtgctgct gccgggcgtg cgcgtttccc tgacccgtcc ggtcaaaggc gaagacgaag
    20701 cgcacaccca aacctggcat taccccgacg gtctgaaaag ctatctgacc gacctgattg
    20761 ccgacgcgca ggaagccgtg cctatcttct cttgcgaaaa ctacatttca gacggccaca
    20821 acggcgattt cagcatcggc gaaggcgccg cgtttgccct gacctggctg gaagaaggct
    20881 cgtgcgccaa cgaaagctac gtcaacctca tccccacccc gctgggcggc acgcacgaag
    20941 cgggcttgaa acaagccgtg ttcaacgccg tcagcaactt catcaatctg cacaaccttt
    21001 taccacgcgg cgtgaaagtg caaagcgacg acgtgttcgg caaaaccgcc tttgtcctct
    21061 ctgcccgtgt cctcgacccg cagttccaag gtcagaccaa agacaaactg accaaccgcg
    21121 acgcgctgaa actcgttgct accgtatcgg gcgacccttt ggaattgtgg ctgaaccaaa
    21181 acgtggactt cggcaaaaaa atcgccgaac tcgccatccg tcaggcacag gcgcggatgc
    21241 gttcggttaa aaagattgaa aagaaaaaag gcagcggcgt cgccgtcctg cccggtaagc
    21301 tgaccgactg cgaaagcgaa gacatccgcg aaaacgaact cttcctcgtc gaaggcgatt
    21361 ccgccggcgg ctccgccaaa ctcgcccgcg acaaagccac ccaagccatc ctgcccctgc
    21421 gcggcaaagt gctcaacagc tttgaagtcc accccgacca gctcttcggc aacgccgaaa
    21481 tccacgacat ttcagttgcc atcggcgtcg atccgcacgg catcaacgac catcccgatt
    21541 taagcggcct gcgttacggc aaaatcgcca tcctgtccga tgccgacgtg gacggctcgc
    21601 atattcaagt tttgctgctg accctgttct accgccactt cccgaaactg gttgccgatg
    21661 gacacatcta cgtcgcccag ccgccgctgt tccgcgtcga tgtcaacgca caaggcaaaa
    21721 gcaaacctgc ccgcaaattc tatgccctcg accaaaacga actcgacagc attttagagc
    21781 ggctgcaaaa agaaggcgtc aaagaaaccg cctattccat cagccgtttc aaaggattgg
    21841 gcgagatgaa ccccgaccag ctcaaagaca ccaccatgca ccccgacacc cgccgcctgt
    21901 tgcaggtgca aatccccgaa ggagcggatg acgaaacacg cgacatcttc gtcaaactga
    21961 tgggcaaagg cgaagccgcc gcccgccgcg cttggatgga acgcgaaggc gatacggcgg
    22021 aactcgatat ttgaaccgtg attgccgcat acgaaaaaat gccgtctgaa accaaatcgg
    22081 ctttcagacg gcatttcgtt tggggattta ttctgctgcg gaagattcgg ctgcttcggc
    22141 ttcaacagac ggtgtttcgg cggcagcttg ggcggactgc tgttgcaaag cctgctgcac
    22201 gaaaggatgg ttttgtgcga ttgcctgttc ttcgggggta acttcgcctt tgaaacggtt
    22261 gttcaaatcg aaacgtttgc cgccgcgcgc caaggctttc agatagcgcg gacggcgaca
    22321 gtggttggcg aggacgcgtg caataagtgt aggatcgtat tggggcagcg cggtaatcaa
    22381 gtcttggtcg ataccgagtg ccaacggttt aaatcgtttg aatacatcgt atttgccgta
    22441 gatatggtcg gcaatcattt ctgtctgttt ctttttgctc atggtttgga ccgcagattt
    22501 cagtgctgcg cccaaagcgg tttcttgtat catttcagtt gcattcctct aaacaaaccc
    22561 gtgcgtcaag gctgcacggc aatgcttggt attctattat aaagtctgtg ttttggctaa
    22621 atttttattt gtttgaaagg gtaatgtcgg gcgtattaac ctgaacgtcg gcattttgcg
    22681 cgcgatggcg cagagcgtgg tcgatgagga ctaacgcgag catggcttcg gcaatggggg
    22741 cggcgcgcag tccgacgcag gggtcgtgcc tgccgtgggt ggcgagttcg acggggtcgc
    22801 cgttgatgtc gatactgcgg cgcggtgtgg caatggagct ggtgggtttg atggcgatat
    22861 tgacgcagat gttttgtccg gtgctgatgc cgccgaggat gccgccggcg tggttggaca
    22921 ggaagccttg cggggtcagt tcgtcgccgt gttcgctgcc gcgttggaca acgctgccga
    22981 agcctgcgcc gatttccacg cctttgacgg cgttgatgcc catcatcgcg taggcaattt
    23041 cggcatcgag gcggtcgaaa acgggttcac ccaaaccgac ggggacgttg gtcgcttcga
    23101 tatgcagttt cgcgccgacg gaatccaagg atttgcgcac gctgtccata tagttttcca
    23161 gctcggcgat ttggctatgg ttggcggcga aaaaaggatt ttgggaaatg tgctcgcagc
    23221 cttcaaaccg gatttctttt tcgccgactt gggtaacgta ggcggtgatt tccgtgccga
    23281 atttttcttt caaccatttt ttggcaacgg ctccggcagc aacgcgggcg gcggtttcac
    23341 gggcggagct cctgccgccg ccgcggtagt cgcgcgtgcc gtatttgtgc caataggtat
    23401 agtcggcatg gccggggcgg aaactttggg cgatgttgcc gtagtctttg ctgcgctggt
    23461 cggtattgcg gattaagagg gcgatgggcg tgccggtggt tttgcctttg aatacgccgg
    23521 agaggatttc tacttggtcg gtttcgcggc gttgggtaac gtggcggctg gtgccgggtt
    23581 tgcgtcggtc gaggtcaaat tggatatccg cttcgcttaa ttccaagccg ggcgggcagc
    23641 cgtcgatgat gcagcccaaa cctgcgccgt ggctttcgcc gaacgtggtc acggtgaaga
    23701 gttgtccgaa agtgttgcct gccatatttt ccttctgtcg gcggtatgtt ggagacggcg
    23761 gattttagca taaaagttgg aggaaaacgg gttatatgcc ggtaaagggg ttgcgtgttt
    23821 tgcagtgaat cggcttataa tccggtctga tttttcagga tagcgatatg agcgactaca
    23881 cgcagcagct tcaagataaa aaagaccacc ttaaaaccct ttttgcaggt ttggatgttc
    23941 ctgagtggga agtgtacgaa tctccggaca aacattaccg tatgcgtgcc gagttccgta
    24001 tttggcacga aggcggtgaa atgttttatg ccatgtttga aaaaggacaa aaggctggcg
    24061 gggcaagcct gatccgttgc gaccgttttg aagcggcttc cgaagccgtc aaccgcctga
    24121 tgccagaatt gattgccgtt gccgcccaat ctgccgaact gagaaaccgt tggtatgccg
    24181 tcgaattttt gtctacgctc agcggggaaa tgctggttac catgatttac cacaaaaggc
    24241 ttgataatga gtggatgcag gcggcgcaag cgttacagca acagttggat atttccgtca
    24301 tcgggcggag caggggacag aaaatagtct taaaacagga ctatgtaacg gaaactttga
    24361 aggtcggcaa ccgggatttc cgttatcggc aaattgaagg cagttttacc caaccgaatg
    24421 ccgccgtgtg tcagaaaatg cttgaatggg cctgcggtgc agcagaagga ttggatgggg
    24481 atttgctcga actgtattgc ggaaacggca actttacgct tcctttatct gaaaagtttg
    24541 aacgtgtttt ggcaaccgaa atctccaaaa cctccgtcag cgcggcgcaa tggaatatcg
    24601 aagccaaccg catcggcaac atcaaaatcg cccgtctgtc tgctgaagaa tttaccgaag
    24661 cctataccgg aaaacgtgag tttaaacgcc ttaaggatgg cggtattgct ttgacggatt
    24721 acgcattttc cactattttc gtcgatccgc cgcgtgccgg tatcgatgag gaaactttga
    24781 agctggtgtc gcagtttgac aacatcatct acatttcctg caatcccgaa acgctgcgta
    24841 ccaatttgga caccttggcg gaaacccata cggttgaacg tgccgccctg ttcgatcaat
    24901 ttccgtttac gcaccatatt gaaagcggtg tgctgttgaa aaagaaaatc cttggaaaaa
    24961 gcaagaggta aggactatgt accgacacat cgaatactat cccggcgatc cgattttgag
    25021 tttggtcgaa accttcaaaa acgacccgcg ccccgaaaaa gtcaatttga gcataggcat
    25081 ttatttcgac gacgaaggca aaatgcccgt gttggaatcc gtgagccgcg ccgaaaccgc
    25141 ccgcgccgcc actcctgtgc cgtcgcccta cctgccgatg gaaggcttag acacttaccg
    25201 cagcgcggtg cagcatttgt tgttcggcaa agacaacccc gcgctcgcgc aaggacgtat
    25261 tgttaccgta caaaccttgg gcggctcagg cgcgctcaaa gtcggggcgg actttctgca
    25321 ccgctggttt cccgaagcgt gcgcctacgt cagcgacccg acttgggaca accatcgcgg
    25381 catttttgaa agcgcaggtt tcgaggtcgg cacttaccca tattacgacc ctgctgccgt
    25441 cggcgtgaaa ttcgacgaaa tgaccgcgtt tttcaacacc ctgcccgaaa acagcgtcct
    25501 gatcctccat ccctgctgcc acaacccgac cggcgtggat atgtcggaac aacaatggga
    25561 cgaagtgttg cacatcatca aaacgcgcaa actgattccg tttatggaca tcgcctacca
    25621 aggcttcggc ggcgatttgg acagcgatgc ctacgccgtc cgcaaagcgg tggaaatgga
    25681 attgcccttg ttcgtcagca attccttctc aaaaaacctg tcgctctacg gcgagcgcgt
    25741 cggcggcctg agcgtggttt gcccgaataa ggaagaagcg gatttggtgt tcggacagct
    25801 caaattcacc gtccgccgca tctactccag cccgcccgcg cacggcgcgt atatcgccgc
    25861 cgacgtgatg aacagccccg aactttacgc cttgtggcaa aacgaggttt atatgatgcg
    25921 cgaccgcatc cgtgcgatgc ggcagaaact ttatgatgtc ttaactgcgc aaatccccga
    25981 tcgcgatttc acttatttca tcaaacagcg cggcatgttc ggctacacag gattgagcgt
    26041 ggaacaagtc cgcaggctgc gcgacgaatt tgccgtttac ctgctggatt ccggcaggat
    26101 gtgcgtcgcc ggactgaata cgtcgaatac cgactatgtt gcccgcgcat ttgcggaagt
    26161 cttgaaataa gagtttgaag taagtcaaaa gaccgtctga aaaatattta tctttcagac
    26221 ggtctcttta taattggcgc acccaacagg gatcgaacct gtgacctcca gcttcggaaa
    26281 ctgacactct tccaactgag ctatgggtgc gtaaaacgta aggttaacgt aaattctgca
    26341 aattggcaaa ggttatcttg cgccggcagg cggcgtatgg cggcataagg agagttttct
    26401 tgaggataaa ccattatttt caaaggatta tttgttttat acagataccg ttggcaaatt
    26461 ttttcatatt ttcaatgata gcgattggaa agaccctgtg aattcagtat aatccagcaa
    26521 aatattgtta actgcgttta acacaccaaa ctataattta cagcacaacc taacctgacg
    26581 gcgaggccta ccaaatgaaa caactccgcg acaacaaagc ccaaggctct gcactgttta
    26641 cccttgtgag cggtatcgtt attgttattg cagtccttta tttcctgatt aagctggcgg
    26701 gcagcggctc gttcggcgat gtcgatgcca ctacggaagc agcaacgcag acccgtatcc
    26761 agcctgtcgg acaattgacg atgggcgacg gcatccccgt cggcgaacgc caaggcgaac
    26821 agattttcgg caaaatctgt atccaatgcc acgcggcgga cagcaatgtg ccgaacgctc
    26881 cgaaactgga acacaacggc gattgggcac cgcgtatcgc gcaaggcttc gataccttgt
    26941 tccaacacgc gctgaacggc tttaacgcca tgcctgccaa aggcggtgcg gcagacctga
    27001 ccgatcagga actcaaacgg gcgattactt acatggcgaa caaaagcggc ggttctttcc
    27061 cgaatcctga tgaggctgcg cctgccgaca atgccgcttc aggaacagct tctgctcctg
    27121 ccgatagtgc agctccggca gaagcgaagg cagaagacaa gggtgcggca gcccctgcgg
    27181 tcggcgttga cggtaaaaaa gtcttcgaag caacctgtca ggtgtgccac ggcggttcga
    27241 ttcccggtat tcccggcata ggcaaaaaag acgattgggc accgcgtatc aaaaaaggca
    27301 aagaaacctt gcacaaacac gcccttgaag gctttaacgc gatgccggcc aaaggcggca
    27361 atgccggttt gagcgatgac gaagtcaaag cggctgttga ctatatggca aaccaatccg
    27421 gtgcaaaatt ct
//
LOCUS       DAXIFD010000007        26155 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.007, whole genome shotgun sequence.
ACCESSION   DAXIFD010000007 DAXIFD010000000
VERSION     DAXIFD010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26155
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.007"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(68..1366)
                     /locus_tag="ACFOCN_000240"
     CDS             complement(68..1366)
                     /locus_tag="ACFOCN_000240"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HFC6969455.1"
                     /translation="MAKNVVVIGAQWGDEGKGKIVDWLAEEAGGVVRFQGGHNAGHTL
                     VVGGKKTILRLIPSGILHESLDCFIGSGVVVSPEALLGEIDELNAAGVKNVEGRLKIA
                     PTCPLILPYHIALDQAREASRGKGKIGTTGRGIGPAYEDKVARRAIRAADLLHPEKLR
                     EKLDAILAYYNVQLQHLHNAEPVKAEDVMAVIEKVALRIAPMITDVSRVLNEKNKNGE
                     KLLFEGAQGALLDIDYGTYPFVTSSNCLAGAASAGAGVGPQMLDYVLGIVKAYTTRVG
                     SGPFPTELFDEVGAGLAERGHEFGSVTGRARRCGWFDAAALKRSIQINGISGMCITKL
                     DVMDGVETINICVGYELPDGGKTDILPCGSDAVETCKPIYETMPGWRESTFGVKSYDA
                     LPANAKAYLKRIEEVCGAPVAIVSTGPDREETIVLHHPFA"
     gene            complement(1470..2621)
                     /locus_tag="ACFOCN_000241"
     CDS             complement(1470..2621)
                     /locus_tag="ACFOCN_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HFC6969456.1"
                     /translation="MQTWQLPEHIADVLPTNARQLESAREQLLALFRVHGYELVQPPL
                     MEYAHSLLTHIDAGLSLKTILVTDRLSGRQLGIRADITPQVARIDAHLLSANQGINRL
                     CYAGPVLHAQPDGLLNMREPLQAGAEMYGFADIRGDIELIDLMLKSMKIADMGKVLLS
                     LGHIGIFRALSDAAHLDAGQSATLLALMQDKDTGTVEAQVKAWKLDGMWAKAFSLLPR
                     LYGGREVLSDARGRLPDLSAVGGALDELQAVCDAFPDCEIHIDLSELRVDNYHTGLLY
                     AAYAADFHDAVARGGRYDGLGGYFGRARPATGFSFDLRSFIGRLPTSERQPAVLVDAE
                     DAEAAREAVEALREQGQCVVIDYGIGHNVSEELAGRLKKTDGVWQVVKR"
     gene            2956..4335
                     /gene="norM"
                     /locus_tag="ACFOCN_000242"
     CDS             2956..4335
                     /gene="norM"
                     /locus_tag="ACFOCN_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter NorM"
                     /protein_id="HFC6969457.1"
                     /translation="MLLDLNRFSFSVFLKEVRLLTALALPMLLAQVAQVGIGFIDTVM
                     AGGAGKEDLAAVALGSSAFATVYITFMGIMAALNPMIAQLYGAGKTDEVGETGRQGIW
                     FGLFLGVFGTVLMWAAITPFRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYA
                     SSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGLATMAVLWFSALALW
                     IYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPFG
                     EDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVLGWML
                     AVITVLSLVLFRSPLVSMYNNDPAVLSIAATVLLFAGLFQPADFTQCIASYALRGYKV
                     TKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAIALVWCLELCSR
                     EMVRSHKAV"
     gene            4514..5554
                     /gene="murB"
                     /locus_tag="ACFOCN_000243"
     CDS             4514..5554
                     /gene="murB"
                     /locus_tag="ACFOCN_000243"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HFC6969458.1"
                     /translation="MQPIRYRTDLTPYNTFGLRAQARAFIALEHADGLRDIVRLPEFN
                     RDTVLWLGGGSNILLMEDYAGLVVHMENKGIREIARSDGMVLIEAQAGEIWHDFVLHA
                     VALGLNGLENLSLIPGTVGASPVQNIGAYGVEAKDVIHSVRCFDLDTETFVTLSNADC
                     RFAYRESLFKQEGKGRYVIVSVVFALKTHFVPNLGYGDLAAAVAELSAGRVPTAKDVS
                     DAVCAIRNSKLPNPNVLGNVGSFFKNPVVSAEKAATLLQRHPDMPRYPQPDGSVKLAA
                     GWLIDQCRLKGFQIGGAAVHDRQALVLVNKNNASANDVRQLAQHIKFTVFARFQVELH
                     AEPNWLPASFSL"
     gene            5566..6216
                     /locus_tag="ACFOCN_000244"
     CDS             5566..6216
                     /locus_tag="ACFOCN_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HFC6969459.1"
                     /translation="MPVTRPAKINTYTRIIDASLALFNEEGERNISTNHIAAHLGISP
                     GNLYYHFRNKDEIIVQLFKRYSEALLEYLNEAVLPSDVEDSINYMAGIYDVMWEYRFL
                     FSDVNTLLARSAELLGEHNTFTQAKVSPLLVNLLTQLNGLNIIQADQTAMNDLAVNMW
                     MITKYWFDFDSSLRGRTKLTEDSKARGIRRTLSLLRPYLLPEHREKYDRKIGNGNP"
     gene            6271..7047
                     /locus_tag="ACFOCN_000245"
     CDS             6271..7047
                     /locus_tag="ACFOCN_000245"
                     /EC_number="1.1.1.290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6969460.1"
                     /translation="MRAVPPPHISITGLGYLGLPLAQKFYQHGSRVAAIKRSLTSDDI
                     NLPIHLDTFDLGSTDAFQTALWRHHADKPVWFFLLPPSSLTHYADTVKQWAELARACN
                     VQHLIFTSSTSVYGDTARECDETATPDPQTESARQILAAEQHLLDSGISNIDILRLGG
                     LYCAERHPVSRLVQKQNIPGGNRPINIVHRNIAVESLFQTAFNPGGRRLKNIIEPRHP
                     TRREFYTEEAAKLGLPAPDFAPDDSMGKIIRTVCDNSLSL"
     gene            7098..7664
                     /locus_tag="ACFOCN_000246"
     CDS             7098..7664
                     /locus_tag="ACFOCN_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032934 - sterol binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HFC6969461.1"
                     /translation="MSALLPIINRLILQSPDSRSELAAFAGKTLTLNIAGLKLAGRIT
                     EDGLLSAGNGFADTEITFRNSAVQKILQGGEPGAGDIGLEGDLILGIAVLSLLGSLRS
                     RASDELARIFGTQADIGSRAADIGHGIKQIGRNIAEQIGGFSRESESANIGNEALADC
                     LDEISRLRDGVERLNERLDRLERDIWID"
     gene            7684..8574
                     /locus_tag="ACFOCN_000247"
     CDS             7684..8574
                     /locus_tag="ACFOCN_000247"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HFC6969462.1"
                     /translation="MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGI
                     KEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIALRAVPIIGINQGH
                     LGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKTAERAIALNDAVLSRGG
                     AGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICP
                     QSMTNRPIAIPDTSEIEILVTQGGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHP
                     TDYQYFKTLRQKLHWGEQLV"
     gene            8599..9357
                     /locus_tag="ACFOCN_000248"
     CDS             8599..9357
                     /locus_tag="ACFOCN_000248"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6969463.1"
                     /translation="MNPKISSDHTEDAVRLSKRMAQLGLCSRREADGYIEQGWVTVNG
                     KTAVLGQKVSPADRIELNKKAHEQQAARITILLNKPVGYVSAQAEKGYKSAAELITPE
                     NRWEGDTGRIRFDPKHKIGLAPAGRLDIDSVGLLVLTQDGRIAKQLIGENSGSEKEYL
                     VRVRGKLDEKGLALLNHGLSLDGEKLRPAQVEWQNEDQLRFVLKQGKKRQIRRMCELV
                     GLRVVGLKRIRMGKVKLGRLPPGKWRYLAPGESF"
     gene            complement(9412..10077)
                     /locus_tag="ACFOCN_000249"
     CDS             complement(9412..10077)
                     /locus_tag="ACFOCN_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6969464.1"
                     /translation="MTVLDREQVLSAFKNRKSCRHYDAARKISAEDFQFILELGRLSP
                     SSVGSEPWQFVVVQNPEIRQAIKPFSWGMADALDTASHLVVFLAKKNARFDSPFMLES
                     LKRRGVTEPDAMAKSLARYQAFQADDIKILDDSRALFDWCCRQTYIALGNMMTGAAMA
                     GIDSCPVEGFNYADMERVLSGQFGLFDAAEWGVSVAATFGYRVQEIATKARRPLEETV
                     IWA"
     gene            complement(10190..10963)
                     /gene="folE2"
                     /locus_tag="ACFOCN_000250"
     CDS             complement(10190..10963)
                     /gene="folE2"
                     /locus_tag="ACFOCN_000250"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase FolE2"
                     /protein_id="HFC6969465.1"
                     /translation="MNTIADVQSSRDLRNLPINQVGIKDLRFPITLQTAEGIQSTVAR
                     LTMTVYLPAEQKGTHMSRFVALMEQHAEALDFAQLRRLTAEMVALLDSRAGKISVSFP
                     FFRKKTAPVSGIQSLLDYDVSLTGEMKDGAYGHSMKVMIPVTSLCPCSKEISQYGAHN
                     QRSHVTVSLTADAEVGIEEVIDYVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDM
                     VRDVATSLIADKRIKSFVVESENFESIHNHSAYAYIAYP"
     gene            11154..12311
                     /locus_tag="ACFOCN_000251"
     CDS             11154..12311
                     /locus_tag="ACFOCN_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HFC6969466.1"
                     /translation="MKFATQAIHSGYDCDEHNRALMPPIYQNSMFALHEIGENVPYRY
                     SRLSNPTRQVLEDTVADLEHGAAGFAFSSGMAGIDAVWRTFLQPGDTIVAVADIYGGA
                     YDLLVDVYQKWGVNVVFADLGNLDNLDKLLKAHKVKLVWLETPSNPLLRLVDIKALAA
                     KAKAAGALVGIDNTFATPYLQQPLDMGCDFVFHSATKYLCGHSDVLMGIVVAKTKELA
                     QPLHDMMVHTGAVAGPMDCWLVLRGIKTLALRMNAHCQNALEIARRLEAHPAIEKVFH
                     PGLPSHEHYELAQAQMPKGIGGVVTVYLKNDTREAANSVIKNMKLVKMASSLGGVESL
                     VNHCYSQSHSGVPHNVKMEMGIKVGLLRFSIGIEDADDIWNDISAALDTTL"
     gene            complement(12374..13375)
                     /gene="hemB"
                     /locus_tag="ACFOCN_000252"
     CDS             complement(12374..13375)
                     /gene="hemB"
                     /locus_tag="ACFOCN_000252"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HFC6969467.1"
                     /translation="MQFPYRNVPASRMRRMRRDDFSRRLMREHTLTADDLIYPVFVLE
                     GSAREEDVPSMPGVKRQSLDRLLFTAEEAVKLGIPMLALFPVVTANKTERAQEAYNPE
                     GLVPSTVRALRERFPELGIMTDVALDPYTVHGQDGLTDENGYVMNDETVEVLVKQALC
                     HAEAGAQVVAPSDMMDGRIGAIREALEDAGHIHTRIMAYSAKYASAFYGPFRDAVGSS
                     GNLGKADKKTYQMDPANTDEALHEVALDIQEGADMVMVKPGLPYLDVVRRVKDEFGVP
                     TYAYQVSGEYAMLQAAVANGWLDGDKVVLESLLAFKRAGADGILTYYAIEAAKMLKR"
     gene            complement(13558..13842)
                     /gene="yhbY"
                     /locus_tag="ACFOCN_000253"
     CDS             complement(13558..13842)
                     /gene="yhbY"
                     /locus_tag="ACFOCN_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HFC6969468.1"
                     /translation="MTDTKLNTKEILELKARAHHLHPVVMVGQQGLTDAVIKETDAAL
                     TAHELIKVRVFGDDRAERIEICTALCEAVDAQPVQHIGKLLVLWRKNIEG"
     gene            13952..14572
                     /locus_tag="ACFOCN_000254"
     CDS             13952..14572
                     /locus_tag="ACFOCN_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HFC6969469.1"
                     /translation="MAVRSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKD
                     KLIKPGTVLADLGSAPGSWSQVAAKLTGTSGAVFALDILPMEAIGGVSFIQGDFREND
                     VLAQFEGLLNNRPLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFL
                     VKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIYLLGKNKR"
     gene            14636..16603
                     /gene="ftsH"
                     /locus_tag="ACFOCN_000255"
     CDS             14636..16603
                     /gene="ftsH"
                     /locus_tag="ACFOCN_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HFC6969470.1"
                     /translation="MGNTFKSILVWVALGIGLMAAFNALDGKKEDNGQIEYSQFIQQV
                     NNGEVSGVNIEGSVVSGYLIKGERTDKSTFFTNAPLDDNLIKTLLDKNVRVKVTPEEK
                     PSALAALFYSLLPVLLLIGAWFYFMRMQTGGGGKGGAFSFGKSRARLLDKDANKVTFA
                     DVAGCDEAKEEVQEIVDYLKAPNRYQSLGGRVPRGILLAGSPGTGKTLLAKAIAGEAG
                     VPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN
                     DEREQTLNQLLVEMDGFESNQTVIVIAATNRPDVLDPALQRPGRFDRQVVVPLPDIRG
                     REQILNVHSKKVPLDESVDLLSLARGTPGFSGADLANLVNEAALFAGRRNKVKVDQSD
                     FEDAKDKIYMGPERRSMVMHEDEKRATAYHESGHAIVAESLPFTDPVHKVTIMPRGRA
                     LGLTWQLPERDRISMYKDQMLSQLSILFGGRIAEDIFVGRISTGASNDFERATQMARE
                     MVTRYGMSDKMGVMVYAENEGEVFLGRSVTRSQNISEKTQQDIDAEIRRILDEQYQIA
                     YKILDENRDKMETMCKALMEWETIDRDQVLEIMAGKQPSPPKDYSHNLRENADAAEDN
                     APHAPTREETEAPAPADTASTESEQQPENKA"
     gene            16824..17255
                     /locus_tag="ACFOCN_000256"
     CDS             16824..17255
                     /locus_tag="ACFOCN_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HFC6969471.1"
                     /translation="MKKVEKNILVLHGADKMFELVDKVEDYPHFLPWYSKTEVIGRSG
                     NELKARLFMDYMHVRQSFATHNRNIPGREIRMELLEGPFKTLRGTWKFIDLGDDMCKI
                     EFNLEYDFSNAVLSALISPVFNHLSVTLVEAFVKEADRRYA"
     gene            17248..17526
                     /locus_tag="ACFOCN_000257"
     CDS             17248..17526
                     /locus_tag="ACFOCN_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HFC6969472.1"
                     /translation="MLEIEIVYGLPDRQVLKTMQLAEGTTVRAAALQSGLDGIFEDLN
                     LHSAPLGIFGKAVKDDTPLRDGDRIEVYRPLLIDPKEARRKRVQNQEE"
     gene            17579..18157
                     /gene="pth"
                     /locus_tag="ACFOCN_000258"
     CDS             17579..18157
                     /gene="pth"
                     /locus_tag="ACFOCN_000258"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HFC6969473.1"
                     /translation="MSNTIKMVVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEE
                     KKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPC
                     GRIKFKLGGGNGGHNGLKDIQAKLGTADYYRLRLGIGHPGDRNLVVGYVLNKPSTEHR
                     RQIDDAVAKSLQAIPDILAGKWEEATRFLHSK"
     gene            18218..18424
                     /locus_tag="ACFOCN_000259"
     CDS             18218..18424
                     /locus_tag="ACFOCN_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dioxygenase"
                     /protein_id="HFC6969474.1"
                     /translation="MTELKQLIQTESIPVIEETLDFLLYECSIDDAPSAEEVAQWRDI
                     LAARGGKFLRLSKICQTWLDEEAA"
     gene            18421..18783
                     /locus_tag="ACFOCN_000260"
     CDS             18421..18783
                     /locus_tag="ACFOCN_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HFC6969475.1"
                     /translation="MKLPRNRFSLLSALWFAGGIYSLLFKAADTAPPPFPHFDKAAHL
                     ALFFAQIWLLTKAFKTGKLPIPYRSLMVFALCFALFSECAQAWFTATRTGSLGDVLAD
                     LTGALLALFAARSADRPD"
     gene            19014..20429
                     /locus_tag="ACFOCN_000261"
     CDS             19014..20429
                     /locus_tag="ACFOCN_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6969476.1"
                     /translation="MNLHAKDKTQHPENVELLSAQKPITDFKGLLTTIISAVVCFGIY
                     HILPYSPDANKGIALLIFVAALWFTEAVHITVTALMVPILAVVLGFPDMDIKKAMADF
                     SNPIIYIFFGGFALATALHMQRLDRKIAVALLRLSRGSMKAAVLMLFLVTAFLSMWIS
                     NTATAAMMLPLAMGMLSHLDREKERKTYVFVLLGIAYCASIGGLGTLVGSPPNLIAAK
                     ALNLDFVGWMKLGLPMMLLILPLMLLSLYVILKPNLNERVEIKAESIPWTLHRVIALL
                     IFLATAAAWIFSSKIKTAFGISNPDTVIALSAAVAVVVFGVAQWKEVARNTDWGVLML
                     FGGGISLSTLLKTSGASEALGQQVAATFSSAPAFLVILIVAAFIIFLTEFTSNTASAA
                     LLVPIFSGIAMQMGLPEQVLVFVIGIGASCAFMLPVATPPNAIVFGTGLIKQREMMNV
                     GILLNILCVVLVALWAYAVLM"
     gene            20548..21057
                     /locus_tag="ACFOCN_000262"
     CDS             20548..21057
                     /locus_tag="ACFOCN_000262"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6969477.1"
                     /translation="MIILHTNKGDIKIELDFDKAPVTAKNFEQYVKDGFYDGVIFHRV
                     IKGFMIQGGGMDENMNEKETRDPIQNEASNGLPNDKYTIAMARTSDPHSASAQFFINT
                     ADNAFLNFRSKELYGKTVVQDWGYAVFGKVVDGFDVVDAIEGVSTKRHGYHDDVPSEP
                     VVIIKAEAV"
     gene            21220..22602
                     /locus_tag="ACFOCN_000263"
     CDS             21220..22602
                     /locus_tag="ACFOCN_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HFC6969478.1"
                     /translation="MANIAHDIFKAYDIRGIVGKTLTDEAAYLIGKAIATKASEKGIT
                     RIALGRDGRLSGPGLMAQIQHGFTDSSIDVLNVGMIATPMLYFAAINECGGSGVMITG
                     SHNPPDYNGFKMMLGGDTLAGEAIQELLAIVEKDGFVAADKQGSVTEKDISGEYHNNI
                     VGHIKLKRPMKIVIDAGNGVGGAFAGKLYKGLGNEVAELFCEVDGNFPNHHPDPSKPK
                     NLQDLIAALKNSDAEIGLAFDGDADRLGVVTKDGNIIYPDRQLMLFAQDVLSRNPKAK
                     VIFDVKSTRLLTPWIKEHGGEPVMEKTGHSFIKSAMKKTGALVAGEMSGHIFFKERWF
                     GFDDGLYAGARLLEILSASDNPSEVLNNLPQSISTPELNIALPEGSNGHQVIDELAAK
                     AEFEGATEIITIDGLRVEFPDGFGLMRASNTTPILVLRFEADTQEAIERIQNQFKAVI
                     ESNPNLIWPL"
     gene            complement(22622..23377)
                     /locus_tag="ACFOCN_000264"
     CDS             complement(22622..23377)
                     /locus_tag="ACFOCN_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6969479.1"
                     /translation="MIKIRNIHKTFGESTILRGINLDVGKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEDGQIEFDNERPLKIDFSKKPSKHDILALRRKSGMVFQQYNLFPHKTAL
                     ENVMEGPVAVQGKPAAQAREEALKLLEKVGLGDKVDLYPYQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNAMKELAREGWTMVVVTHEIKFALEVATTVVVMDG
                     GVIVEQGSPKELFDHPKHERTRRFLSQIQSTKI"
     gene            complement(23387..24103)
                     /locus_tag="ACFOCN_000265"
     CDS             complement(23387..24103)
                     /locus_tag="ACFOCN_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6969480.1"
                     /translation="MFNNFLASLPFMTETRADMIVSAFLPMVKAGFAVSLPLAAASFV
                     IGMMIAVAVALVRIMPAGGIVRKILLKLVEFYISVIRGTPLLVQLVIVFYGLPSVGIY
                     IDPIPAAIIGFSLNVGAYASETIRAAILSVPKGQWEAGFSIGMTYMQTFRRIVAPQAF
                     RVAVPPLSNEFIGLFKNTSLAAVVTVTELFRVAQETANRTYDFLPVYIEAALVYWCFC
                     KVLFLIQARLEKRFDRYVAK"
     gene            complement(24093..24920)
                     /locus_tag="ACFOCN_000266"
     CDS             complement(24093..24920)
                     /locus_tag="ACFOCN_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6969481.1"
                     /translation="MMLKKFVLGGIAALVLAACGGSESGSGASSAPAQSAVSGSLIER
                     INNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMA
                     GLKAGRFDVVANQVGLTSPERQATFDKSDPYSWSGAVLVARNDSNIKSIDDIKGVKTA
                     QSLTSNYGEKAKAAGADLVAVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGV
                     KIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ"
     gene            25205..26113
                     /locus_tag="ACFOCN_000267"
     CDS             25205..26113
                     /locus_tag="ACFOCN_000267"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HFC6969482.1"
                     /translation="MNTPQSAIIPDHAQAGIFIEADFAANRLNDIKAACRASLDALTA
                     LKARFPDDILGLTIAFGSKAWATFGHTDEGSEIKPFSEMGNGLAPSTQHDMSIHIQSF
                     RQNAAYALAQSVLGAFGDSICVASEEHGLRLYQDRGLDGFVDGTENPQGDENVREVAI
                     IPEGKPDAGGSYVLLQKYLHDLKKWDAVPVAEQEASVGRGKETDDEFGRDVRLPDSHL
                     GRVNLKENGVGLKIVRRSLPFGKISGEHGLMFTAYCRTLHNIEAQLLSMFGDTDGKTD
                     LLLRHLSAAVSGGYYYAPSVERLQNL"
BASE COUNT         6242 a         7657 c         6570 g         5686 t
ORIGIN      
        1 ataaaacggc agcaaaaatg ccgtctgaac tcggaggggc ttcagacggc atttttactg
       61 caaaacctta tgcgaacgga tgatgcagca caatcgtttc ttctcggtcg gggccggtgg
      121 agacgatggc gaccggcgca ccgcagactt cttcaatccg tttcaaatat gctttggcat
      181 tggcaggtaa tgcgtcgtag cttttcacgc cgaaagtgga ttcacgccag ccgggcatgg
      241 tttcgtaaat cggcttgcag gtttccaccg catcggaacc gcaaggcagg atatcggttt
      301 tgccgccgtc gggcaattcg tagccgacgc agatattgat ggtttcaacg ccgtccatta
      361 catcgagttt ggtaatgcac ataccggaaa tgccgttgat ttggatggag cgtttcaggg
      421 cggcggcatc aaaccagccg cagcggcgtg cgcggccggt taccgagccg aattcgtgtc
      481 cgcgttccgc caaacctgcg cctacttcgt cgaacaattc ggtcgggaac gggcctgaac
      541 cgacgcgcgt ggtataggct ttgacgatgc ccaaaacata atccagcatt tgagggccta
      601 cgcccgcgcc tgcggaagcg gctcccgcca gacagttgga cgaggtaacg aagggataag
      661 tgccgtagtc gatgtccaac aacgcacctt gcgcgccttc aaacagcagt ttttcgccgt
      721 ttttgttttt ctcgttcaac acgcgggaca cgtcggtaat catcggcgca atgcgcagcg
      781 cgactttttc gataaccgcc atcacgtctt ccgctttaac cggctcggca ttgtgcagat
      841 gttgcagttg gacattgtaa taggcaagga tggcatccag tttttcacgc agtttttcag
      901 gatgcagcaa atcggcggcg cgaatggcgc ggcgtgccac tttgtcttcg taggcagggc
      961 cgatgccgcg gccggtcgtg ccgattttgc ctttgccgcg cgatgcttcg cgggcttggt
     1021 cgagcgcgat gtggtaaggc aggatcagcg ggcaggtcgg cgcgattttc agacggcctt
     1081 cgacgttttt cacgcctgca gcgtttaact cgtcgatttc gcccaacagg gcttcggggg
     1141 agacgacaac gcccgaaccg atgaagcagt ccagactttc atgcaggatg ccgctcggaa
     1201 tcaggcgcaa aatggttttt ttgccgccga cgaccaaagt atgacccgca ttgtggccgc
     1261 cttggaagcg caccacgccg ccggcttctt ccgccagcca gtcaacgatt ttacctttac
     1321 cctcgtcgcc ccactgtgcg ccgattacta caacattttt agccatagcc atataaccta
     1381 tcgatattaa aaattattgc ggaaatcccc aaaccggtgc ggctttgcgc cccaccacga
     1441 tttgcctttc atccgccatg aacgggtatt tagcgtttca cgacctgcca aacgccgtcc
     1501 gtctttttca gacggcctgc aagctcttcc gaaacattgt gtccgatacc gtagtcaatc
     1561 acgacacact gcccttgttc acgcaaggct tcgactgctt cgcgcgccgc ttcggcatct
     1621 tccgcatcga ccaacacggc gggctgccgt tcgctggtgg gcaaacgccc gataaagctg
     1681 cgcaagtcga aactgaatcc cgttgccggg cgcgccctgc cgaaatatcc gcccaatccg
     1741 tcataacgcc cgccgcgcgc gaccgcgtcg tggaaatcgg cggcataggc ggcatacagc
     1801 aagcccgtgt ggtaattgtc gacacgcagc tcggacaagt cgatatggat ttcacaatcg
     1861 gggaatgcgt cgcacaccgc ctgcaattcg tctaacgcgc cgccgaccgc cgacaaatcc
     1921 ggcaaccgtc cgcgcgcgtc ggacaacact tcacgcccgc cgtacaggcg cggcagcagc
     1981 gagaatgctt ttgcccacat gccgtccagc ttccaagcct tgacctgcgc ttcgaccgtc
     2041 ccggtatctt tatcctgcat caaggcaagc agcgttgcag actgccccgc atccaaatgc
     2101 gccgcatcgg acaaggcgcg aaatatgccg atatgcccca gcgaaagcag cactttgccc
     2161 atatcggcaa ttttcatgct tttcagcatc aggtctatca gctcgatgtc gccacggatg
     2221 tcggcaaaac cgtacatttc cgcccctgcc tgcaagggtt cgcgcatatt cagcagaccg
     2281 tcgggctgcg cgtgcaacac cggaccggca taacacaacc gattaatccc ttggttggcg
     2341 gataaaagat gggcatcgat acgcgccacc tgcggcgtga tgtcggcgcg tatgcccaac
     2401 tgcctgccgc tgagcctgtc cgttaccaaa atggttttca gggaaagccc cgcatcgata
     2461 tgcgtcagca gggaatgtgc gtactccatc agcggaggct gtaccagttc ataaccgtgt
     2521 acgcggaaca gtgccaacaa ctgctccctc gcgctttcaa gctgccgcgc gttcgtgggc
     2581 agtacgtcgg cgatatgttc cggaagctgc catgtctgca tgagaatctg ccttctattt
     2641 tatcatgtaa atacaaaagg ctgcccgatc cgcaatcaga cggcatcttt gccgcaacgc
     2701 atcacgccgc tgtcaaaacg gcgatgcttc cttccgattc agaatccgaa cagcccctgt
     2761 ccgacggctc aatgccgtca agtcgttaaa accaaacttt accataaaat acacacaatc
     2821 tgaatatact tttataccct gtatccgccg tctgacggca cagcattttt ttacgatata
     2881 atgtgcacca ttatttctca tcacttcctg ctgccgtttt ctgcttcaga cggcattttt
     2941 gttgattgaa cacttatgct gctcgacctc aaccgctttt ccttttccgt cttcctgaaa
     3001 gaagtccgcc tgctgaccgc ccttgccctg cccatgctgt tggcgcaggt cgcgcaggtg
     3061 ggcatcggtt ttatcgatac tgtgatggcg ggtggtgcag gcaaggaaga cttggcggcg
     3121 gtggctttgg gcagcagcgc gtttgccacg gtttatatta cctttatggg cattatggcg
     3181 gcgctgaacc cgatgattgc ccagctttac ggcgcgggta aaaccgacga agtgggcgaa
     3241 acggggcggc aggggatttg gttcgggctg tttttgggcg tgttcggcac ggtattgatg
     3301 tgggcggcga ttacgccgtt ccgcaactgg ctgaccttga gcgattatgt ggaaggcaca
     3361 atggcgcagt atatgctgtt caccagcttg gcgatgccgg cggcaatggt acaccgcgca
     3421 ctgcacgcct acgcctccag cctgaaccgc ccgcgcctga ttatgttggt cagctttgcg
     3481 gcgtttgtgt tgaacgtgcc gctgaactat attttcgttt acggcaaatt cggtatgccc
     3541 gctttgggcg gcgcaggctg cggactggcg acgatggcag tgttgtggtt cagcgcgctg
     3601 gcattgtgga tttatatcgc caaggaaaat ttcttccgcc cattcggact gacggcgaaa
     3661 ttcggcaaac cggattgggc ggtgttcaaa cagatttgga aaatcggcgc acccatcggg
     3721 ctgtcttatt ttttggaagc cagcgcgttt tcgtttatcg tgtttttgat tgcgcctttc
     3781 ggcgaggatt atgtggcggc gcagcaggtc ggcatcagtt tgtcggggat tctctatatg
     3841 attccgcaaa gcgtcggctc ggcggggacg gtgcgcatcg gcttttcgct tgggcggcgc
     3901 gaattttcgc gggcgcgtta tatttcgggc gtgtcactgg tgttaggatg gatgctcgcc
     3961 gtgattaccg tgctttcctt ggtattattc cgttcgccgc tggtaagtat gtacaacaat
     4021 gatccggcgg ttttaagcat cgccgccacc gtcttactgt tcgccggctt gttccaaccg
     4081 gcagacttca cccaatgtat cgcctcctac gccttgcgcg gctacaaagt tacaaaggtg
     4141 ccgatgttca tccacgccgc cgccttttgg ggctgcggtc tgctgccggg ctacctgctc
     4201 gcctaccgtt tcgatatggg catttacggc ttctggacgg cattgattgc ctcgctcacc
     4261 atcgccgcca tcgccttggt gtggtgcttg gaattgtgca gtagggagat ggtcagatcg
     4321 cataaggctg tctgaaaact ccgccgatta aaaatatagt ggattaacaa aaaccagtac
     4381 ggcgttacct cgccttgccg tactatttgt actgtctgcg gcttcgttgc cttgtcctga
     4441 tttttgttaa tccactatag aaacgatggg ctgaagcccg ccactggcaa tactcatttt
     4501 aaagttcaaa cccatgcaac ccatccgata ccgaaccgac cttaccccct acaacacttt
     4561 cggcctgcgc gcccaagccc gagcctttat tgcgcttgaa cacgccgacg ggttgcgcga
     4621 catcgtccgg ctacccgagt tcaaccgaga tactgtttta tggctgggcg gcggcagcaa
     4681 tatccttttg atggaggact acgccggtct ggtcgtacat atggaaaaca aaggcatacg
     4741 cgaaattgct cgttcagacg gcatggttct gattgaagcg caggcgggcg aaatctggca
     4801 cgattttgtc ctgcacgccg tcgcgctggg tttgaacggt ttggaaaacc tgagcctgat
     4861 tccgggtacg gtcggcgcgt cgcccgtgca gaacatcggc gcatacggcg tagaggcgaa
     4921 agatgtgatt cacagcgtgc gctgcttcga tttggatacg gaaacctttg taaccctttc
     4981 caatgccgac tgccgcttcg cctaccgcga aagcctgttc aagcaggaag gtaaagggcg
     5041 ttatgtgatt gtttcggtcg tatttgcatt aaaaacgcat tttgtgccga acttgggtta
     5101 cggcgatttg gcggccgccg ttgccgaact gagcgcgggc agggtgccga cggcgaaaga
     5161 tgtttccgat gcagtgtgtg caatccgcaa cagtaaactt cctaatccta acgtgcttgg
     5221 caatgtcggc agtttcttta aaaaccccgt cgtcagcgca gaaaaagccg ccaccttgtt
     5281 gcagcggcat cctgatatgc cgcgctatcc gcagcccgac ggttcggtca aactcgccgc
     5341 cggctggctg atcgaccaat gtcgtctgaa aggctttcaa atcggcggcg cggcggtaca
     5401 tgacaggcag gctttggtct tagtgaacaa aaacaatgcc tcggcaaacg atgtccggca
     5461 gttggcgcaa cacatcaaat ttacagtatt tgctcggttt caggtagaat tgcacgccga
     5521 acccaattgg ctgcctgctt cgttcagcct gtaaatccaa ggagtatgcc cgtgacccgc
     5581 cccgccaaaa tcaatactta cacacgcatc atcgacgcca gccttgcgct tttcaacgag
     5641 gaaggcgagc gcaacatcag caccaaccat attgccgccc acttgggcat cagtccgggc
     5701 aacctctatt accacttccg caacaaagac gaaatcatcg tccaactgtt caaacgttac
     5761 agcgaagccc tgctggaata cctcaacgaa gccgtgttgc cgtctgatgt ggaagactcc
     5821 atcaattata tggcgggcat ttacgacgtg atgtgggaat accgcttcct attcagcgac
     5881 gtgaacaccc tgcttgcacg cagtgccgaa ctattgggcg aacacaatac cttcacccaa
     5941 gccaaagtct ccccgctctt ggtcaacctg ctgacccagc tcaacggtct gaacatcatc
     6001 caagccgacc aaaccgccat gaacgacctc gccgtcaata tgtggatgat cacgaaatac
     6061 tggttcgact tcgacagctc cctgcgcggc cgcaccaagc tgaccgaaga ctccaaagca
     6121 cgcggcatcc gccgcacctt aagcctcctt cgtccttatc ttttgcccga acaccgcgag
     6181 aaatacgacc ggaaaatcgg caacggcaac ccgtaaaccc acagcgtccg aatcagcctt
     6241 cagacggcac ttacccgacg gtatcagcga atgcgcgcag tccccccgcc ccatatctcc
     6301 atcacaggcc taggttacct cggcctgccg ctggcacaaa agttttacca acacggcagc
     6361 cgcgtcgccg ccataaaacg cagcctgact tcggacgaca tcaacctgcc catacatctc
     6421 gacaccttcg acctcggcag caccgatgcc tttcagacgg cattgtggcg gcaccacgcc
     6481 gacaaacccg tctggttctt cctgctaccg ccctcctcgc tgacgcatta cgccgacacc
     6541 gtcaaacaat gggcagaact tgcccgggcg tgcaacgtgc aacacctgat tttcacaagc
     6601 agcaccagcg tttacggcga tacagcgcgc gaatgcgacg aaaccgccac acccgatccg
     6661 caaaccgagt ccgcccgcca aatcctcgcc gccgaacaac acctgctcga cagcggcatc
     6721 tccaacatcg acatcctgcg gctgggcggg ctttattgcg ccgaacgcca tcccgtcagc
     6781 cgccttgttc aaaagcaaaa catcccgggc ggcaaccgcc ccatcaacat cgtccaccgt
     6841 aatatcgccg tcgaaagcct gtttcagacg gcatttaacc ccggcggcag gcggctgaaa
     6901 aacattatcg aaccgcgcca cccgacacga cgcgaattct acacggaaga agccgccaaa
     6961 ctcggtttgc cggctcctga tttcgcaccc gacgacagca tgggcaaaat catccgtacc
     7021 gtttgcgata acagcttaag cctgtaaaat aagtgtcaac agcaacaaac aggcattctc
     7081 cgccccgatc agaaaatatg tccgccctcc tccccatcat caaccgcctg attctgcaaa
     7141 gcccggacag ccgctcggaa cttgccgcct ttgcaggcaa aacactgacc ctgaacattg
     7201 ccgggctgaa actggcggga cgcatcacgg aagacggttt gctctcggcg ggaaacggct
     7261 ttgcagacac cgaaattacc ttccgcaaca gcgcggtaca gaaaatcctc caaggcggcg
     7321 aacccggggc gggcgacatc gggctcgaag gcgacctcat cctcggcatc gcggtactgt
     7381 ccctgctcgg cagcctgcgt tcccgcgcat cggacgaatt ggcacggatt ttcggcacgc
     7441 aggcagacat cggcagccgt gccgccgaca tcggacacgg catcaaacaa atcggcagga
     7501 acatcgccga acaaatcggc ggattttccc gcgaatccga gtccgcaaac atcggcaacg
     7561 aagcccttgc cgactgcctc gacgaaataa gcagactgcg cgacggcgtg gaacgcctca
     7621 acgaacgcct cgaccggctc gaacgcgaca tttggataga ctaaccttca gacggcatcc
     7681 gacatgaaca gcccttttca caacatcggc atcgtaaccc gccccaacac gcccgacatc
     7741 caagacaccg cacacacgct gattaccttt ttgaagcagc acggctttac cgtctatctc
     7801 gacgaagtcg gcataaagga aggctgcatc tatacccaag acaccgtcgg ctgccatatc
     7861 gtcaacaaga ccgaactggg gcaatactgc gacctggtcg ccgttttagg cggagacggc
     7921 acctttctct ccgtcgcccg cgaaatcgcc ctgcgcgccg ttccgattat cggcatcaac
     7981 caagggcatt tgggcttcct gacccaaatt ccccgcgaat atatgacgga caagctattg
     8041 cccgttttag aagggaaata ccttgccgaa gagcgcatcc tgattgaggc cgcactcatc
     8101 cgcgaaggca aaaccgccga acgcgccatc gccctcaacg atgccgtcct ctcccgtggc
     8161 ggtgccggac agatgattga gtttgaagtc ttcgtcaatc gggaattcgt ctatacccag
     8221 cgttcggacg ggctgattgt ctccaccccc accggatcga ccgcctattc gcttgccgcc
     8281 ggcggcccca tcatgcaggc aggattacac gccttcacgc tcgtccccat ctgcccgcaa
     8341 tccatgacca accgccccat cgccattcca gacacgtccg aaatcgaaat cctcgttacc
     8401 caaggcggcg acgcgcgcgt ccatttcgac ggtcaaaccc atatcgacgt gcaaaacctc
     8461 gaccgcatca ccatccgccg ctaccgaaat cccttacgca ttttgcaccc gaccgactac
     8521 caatatttca aaaccctgcg ccaaaaactg cactggggcg agcaattagt ctaagccggc
     8581 ctttacccga aagtatccat gaatcccaaa atttcctccg accatacaga agatgccgtg
     8641 cgcctctcca aacgcatggc gcaactgggg ctttgttcgc gccgcgaagc cgacggctac
     8701 atcgaacagg gctgggtaac ggtcaacggc aaaaccgccg tactcggtca gaaagtttca
     8761 ccggccgacc gtatcgaact gaacaagaaa gcccacgaac agcaggcggc acgcattacc
     8821 atcctgctga acaaacccgt cggctatgtc agcgcacaag cggaaaaagg ctataaatcc
     8881 gccgccgaac tgattacccc tgaaaaccgc tgggaaggcg acaccggccg catccgtttc
     8941 gatccgaaac acaaaatcgg cctcgccccc gccggcaggc tcgatatcga ttcagtcgga
     9001 ttactggtat tgacgcagga cggccgtatc gccaagcagc ttatcggcga aaacagcggc
     9061 agtgaaaaag aatatttggt gcgcgtgcgc ggcaaattgg acgaaaaagg acttgcctta
     9121 ctgaatcacg gattgagttt ggacggcgag aaactgcgtc ccgcccaagt agaatggcaa
     9181 aacgaagacc aactgcgctt cgtgttgaaa cagggtaaaa agcggcaaat ccgccgtatg
     9241 tgcgaactgg tcggactgcg cgtcgtcggg ctgaaacgca tccgcatggg caaggtcaaa
     9301 ctcggcaggc tgccgcccgg caaatggcgt tatcttgctc ccggcgaatc gttttaaata
     9361 agcattaaaa aatgccgtct gaaaatcctt gcgttttcag acggcattgc cttatgccca
     9421 aataacggtt tcttccaagg gcctgcgcgc cttcgtggcg atttcctgaa cgcggtaacc
     9481 gaatgtcgcg gcgacggaca cgccccattc tgccgcatcg aacaaaccga actgcccgga
     9541 caatacgcgt tccatatcgg catagttgaa accttccacc gggcaggaat cgatacctgc
     9601 catcgccgca cccgtcatca tgttgcccaa cgcgatatag gtctggcggc aacaccagtc
     9661 aaacaaggcg cgcgaatcgt ccaaaatctt gatgtcgtcg gcttgaaacg cctgatacct
     9721 cgccaaagat tttgccatgg catccggttc ggtaacgccg cgccgtttga ggctttccaa
     9781 cataaacggg ctgtcgaagc gggcattttt ctttgccaaa aacaccacca aatgactggc
     9841 ggtatccaaa gcatccgcca taccccaaga aaacggcttg attgcctgtc ggatttcagg
     9901 gttttgaacc acaacaaact gccaaggctc cgaaccgacc gaactgggcg acaaacgccc
     9961 gagttctaaa ataaactgaa aatcctcggc actgatttta cgtgccgcat cgtaatgccg
    10021 gcatgatttg cggtttttaa atgcggatag aacctgctct ctgtctaata ccgtcatagt
    10081 gcatccttta ttacttttat tgcaaattga tttcaaaccg atacggcggc agattcgcca
    10141 ataacgccca aacgcctttc agacggcatt tggttcatcg caaacacgcc tacgggtagg
    10201 cgatataggc ataagccgaa tggttgtgga tagattcgaa attctcactc tcgacgacga
    10261 aactcttgat gcgtttgtcg gcaatcagcg aagtagcgac atcgcgcacc atatcttcca
    10321 cgaatttcgg gttttcgtag gccttttcgg taacgtattt ttcatcgggg cgtttgagca
    10381 ggccgtagag ttggcagctc gcctgcgcct ccacataatc gatgacttcc tcgataccga
    10441 cttcggcatc ggcagtcagg ctgacggtaa cgtgcgaacg ctggttgtgc gcgccgtatt
    10501 gggaaatttc tttggaacac gggcaaagcg aggttacggg aatcatgacc ttcatactgt
    10561 ggccgtatgc accgtctttc atttcgcccg tgaggctgac atcataatcc agtaaagact
    10621 gaataccgga aaccggggcg gttttcttgc ggaaaaatgg gaaagaaacg ctgattttgc
    10681 cggcgcggga atccaaaagc gcgaccattt cagcagtcag cctgcgcaat tgtgcaaaat
    10741 ccaaggcttc ggcatgttgc tccatcaatg cgacaaagcg cgacatatgc gtacccttct
    10801 gctcggcggg caggtaaacc gtcatggtca gacgggcaac tgtggactgg atgccttctg
    10861 cagtttgcag ggtaatcgga aagcgcaggt ctttgatacc gacctgattg atcggcagat
    10921 tgcgcaaatc tcggctggat tgcacgtctg caatagtgtt catgagttgt ttttccttaa
    10981 tattcatgta attgttgaga tgtgtgcatg gtatggcgtt tccgccgggg aatataccgt
    11041 caatctgcaa atgcgagatt atatcacttg cttttggcgg ctgcattgat tgtttctatt
    11101 ttcgggatag tgataaaatc ccgacttatt catatcttac aaggcagaaa cagatgaaat
    11161 tcgccaccca agccatccat tccggctacg attgcgacga acacaaccgc gcgctgatgc
    11221 cgccgattta tcaaaacagt atgtttgcgc tgcacgaaat cggcgaaaat gtgccttacc
    11281 gctattcacg tctgagcaac ccgacccgtc aggtattgga agataccgtt gccgatttgg
    11341 aacacggtgc ggcaggtttt gcgttttcca gcggtatggc agggattgat gccgtatggc
    11401 gcaccttcct gcaaccgggc gataccattg tcgccgtcgc cgatatttac ggcggcgcgt
    11461 atgatttatt ggtcgatgtt tatcaaaaat ggggggtgaa cgttgttttt gccgatttgg
    11521 gcaatctgga taatttggac aagctgctta aagcgcacaa ggtcaaactg gtttggctgg
    11581 aaacgccgtc caatccgctt ttgcgcttgg tagacatcaa agcgcttgcc gcgaaagcca
    11641 aagcggccgg cgcactggtc ggcatcgaca acacctttgc cacgccgtat ctgcaacagc
    11701 ccttggatat gggttgcgat tttgtgttcc attccgctac caaatatttg tgcggccatt
    11761 ccgacgtgtt gatgggcatc gtcgttgcca aaaccaaaga gctggcgcag cctttgcacg
    11821 atatgatggt gcataccggc gcggttgccg gcccgatgga ctgctggctg gtgttgcgcg
    11881 gcatcaaaac actggctctg cgcatgaacg cccattgcca aaacgcactc gaaatcgcgc
    11941 gccgtttgga agcccatcct gccattgaaa aagtgttcca tcccggcctg ccgtctcacg
    12001 aacattatga actcgcccaa gcgcaaatgc ctaaaggcat cggcggcgtg gtgacggttt
    12061 atctcaaaaa cgacacgcgc gaagcggcaa acagcgtgat taaaaacatg aaactggtca
    12121 aaatggcttc cagcctcggc ggcgtggaaa gtttggtcaa ccattgctat tcccagtccc
    12181 acagcggcgt gccgcataat gtgaaaatgg aaatgggcat caaagtcggc ctgctgcgtt
    12241 tctccatcgg catcgaagac gcggacgata tttggaacga tatttccgcc gcactcgata
    12301 caactttgta aaccgtaaaa atgccgtctg aaaccatagt ttcagacagc atttcaatat
    12361 tgcgaatcaa atatcaacgc ttcagcatct tggccgcctc aatggcataa taggtcaaaa
    12421 tcccatccgc gcccgcacgt ttgaatgcca gcaggctttc caaaaccact ttatcgccgt
    12481 ccagccatcc gttggcaacc gccgcctgca gcatcgcata ttcgcccgaa acctgatagg
    12541 cataagtcgg cacaccgaac tcgtccttca cgcggcggac aacgtccaaa tacggcaaac
    12601 cgggcttcac catcaccata tccgcacctt cctgaatatc gagcgctact tcatgcagcg
    12661 cctcatcggt gtttgcggga tccatctgat aggtcttttt atctgccttg cccaaattgc
    12721 ccgaactgcc taccgcatca cggaaagggc catagaatgc agaagcatat ttggcggaat
    12781 atgccataat ccgcgtgtgg atatgtccgg catcctccaa cgcctcgcga atcgcaccga
    12841 tacgcccgtc catcatatcc gacggagcaa ccacctgcgc gcccgcttca gcgtggcaca
    12901 aagcctgctt gaccaaaacc tctacggttt catcgttcat cacataaccg ttttcgtccg
    12961 tcagcccgtc ctgaccgtga accgtataag gatcgagcgc gacatccgtc ataatgccca
    13021 gttcgggaaa cctctcgcgc aaggcgcgga cagttgacgg cacgagtcct tcgggattgt
    13081 acgcctcctg cgcacgctcg gttttgtttg ccgtaaccac ggggaacagt gccaacatcg
    13141 gaataccgag ctttaccgcc tcttccgccg taaacagcag cctgtccaaa ctttgacgct
    13201 tcacacccgg catagaaggc acatcctcct cgcgcgccga cccctccaat acgaacaccg
    13261 gataaatcaa atcatcggcg gtcagcgtgt gttcgcgcat caggcggcgt gaaaaatcgt
    13321 ccctgcgcat acggcgcata cgcgaagccg gaacattgcg gtaaggaaac tgcataagcc
    13381 ctccaatcat cctgtcaaca attcaaacca tacggaagcc gccgcaactt gcagacagca
    13441 tcgggcggca atcaaaatcc gttttcaccg gaaagggttt cggcccgccg aaatgccgcg
    13501 ccgaaggacg gcgtcccgcc cattaaagaa caatagcaaa acaacagctt caggctgtca
    13561 gccttcgata ttcttacgcc acaataccaa aagtttcccg atatgctgaa caggttgcgc
    13621 gtcaaccgcc tcacataagg cagtgcagat ttcgatacgt tcggcacggt cgtcgccgaa
    13681 tacgcgcact ttaatcagct catgcgccgt caatgccgca tcggtttcct tgatgaccgc
    13741 gtccgtcaga ccctgctgac cgaccatcac aacaggatgg agatggtgcg cgcgcgcttt
    13801 cagttccaaa atttctttgg tgttcaattt ggtatccgtc attttcctac tgcttgaata
    13861 aaaagaataa tgcggcattg tacgcgattt ggcacgacat cggcaaaatt aacgtacaat
    13921 acgcggtttc cattccgacc cgcgaaccac tatggctgta cgttccaaat cctcaaaagc
    13981 gtggctgcac gaacacgtca acgaccacta cgtccatatg gcgcaaaaag acggctaccg
    14041 cgcccgtgcc gcatacaaac ttttggaaat caacgaaaaa gacaaattaa tcaaacccgg
    14101 cacggtactt gccgacttgg gcagcgcacc gggaagctgg tcgcaggttg ccgccaagct
    14161 gacgggtact tccggagcag ttttcgcctt ggacatcctg cctatggaag ccataggggg
    14221 cgtctccttc attcagggcg acttcaggga aaacgacgtt ttggcgcaat ttgaaggctt
    14281 attaaacaac cgccccttag accttgtaat ctgcgatatg gcgcccaata tgtcgggaaa
    14341 cgccgtaagc gatcaggcgc gcagctttta tttgtgcgaa ctggctttgg acttcgcctc
    14401 gcaacacctg aaaaccggcg gcagcttttt ggtcaaagtc tttcagggtg caggctatca
    14461 ggaatacatg gcagccatgc gcgaaatttt cggcacggtg cagacgcgca aacccgaagc
    14521 ctcgcgcaat cgctccagtg agatttattt attgggcaaa aataaacgct gacaatacag
    14581 acggcgtgct ttacaatcat ttccgtttta cacctcaatt atggagcctt gctaagtggg
    14641 gaacaccttt aaatcaatcc ttgtctgggt cgccttgggt atcggcctga tggctgcgtt
    14701 caacgcttta gacggtaaaa aagaagacaa cgggcaaatc gaatattctc agttcatcca
    14761 acaggtcaac aacggcgaag tatccggcgt caacatcgaa ggatccgtcg tcagcggcta
    14821 cctgattaag ggcgagcgca ccgacaaaag caccttcttc accaacgcgc ctttggacga
    14881 caacctgatt aaaacactgc tcgacaaaaa cgtccgtgta aaagtaacgc cggaagaaaa
    14941 accgagcgcg ctggctgccc tgttttacag cctgctgccc gtcctgctgc tgattggcgc
    15001 gtggttctac tttatgcgta tgcagacggg cggcggcgga aaaggcggcg cattctcatt
    15061 cggcaaaagc cgcgcccgcc tactggacaa agatgccaac aaagtgacct ttgccgatgt
    15121 cgccggctgc gacgaagcca aagaagaagt gcaggaaatc gtcgattacc tcaaagcgcc
    15181 gaaccgctat caaagcctgg gcgggcgcgt gccgcgcggc atcctgctgg cgggcagccc
    15241 gggtacgggt aagacgcttt tggcgaaagc gattgcaggc gaagccggcg tgccgttctt
    15301 cagcatttca ggttccgact ttgtcgaaat gttcgtcggt gtcggtgcaa gccgcgtccg
    15361 cgatatgttc gagcaggcga agaaaaacgc cccctgcatc atctttatcg acgagattga
    15421 cgcagtcggc cgccaacgcg gcgcaggttt gggcggcggc aatgatgagc gcgagcaaac
    15481 attaaaccaa ttgttggttg aaatggacgg ttttgagagc aatcagactg taattgtgat
    15541 tgcggcaacc aaccgccccg acgtactcga tcctgcgctg caacgccccg gccgtttcga
    15601 ccgccaagtc gtcgtccccc tgccggacat ccgggggcgc gaacagattt tgaacgtcca
    15661 ttctaaaaaa gtgcctttgg acgaatctgt ggatttattg tccctcgcgc gcggcacgcc
    15721 gggtttttcc ggtgcggatt tggcaaacct ggttaacgaa gccgccctgt ttgccggccg
    15781 ccgcaacaaa gtcaaagtcg atcaaagcga ttttgaagac gcaaaagaca aaatctatat
    15841 gggtccggaa cgccgcagta tggtgatgca cgaagacgaa aaacgtgcga cggcgtatca
    15901 tgagtccgga cacgcgattg ttgccgaaag cctgcccttt accgaccccg tccacaaagt
    15961 aaccattatg ccgcgcggac gtgcgctggg tctgacttgg cagcttccgg agcgcgaccg
    16021 catcagtatg tataaagatc agatgttgag ccagctctcc atcctgttcg gcggacggat
    16081 tgccgaagac atcttcgtcg gacgcatctc caccggcgca tcaaacgact ttgaacgcgc
    16141 aacccaaatg gcgcgcgaaa tggtaacgcg ctacggcatg agcgacaaaa tgggcgtgat
    16201 ggtttatgcg gaaaacgaag gcgaagtctt cttaggacgc agcgtaaccc gttcgcaaaa
    16261 catttccgag aaaacccagc aggacatcga tgcggaaatc cgccggattt tggacgagca
    16321 gtatcagatt gcctacaaaa tcctcgatga aaaccgcgac aagatggaaa ccatgtgcaa
    16381 agccctgatg gaatgggaaa ccatcgaccg cgatcaggta ctggaaatca tggcgggcaa
    16441 acaacccagt ccgcccaagg attacagcca caacctgcgc gagaatgcgg acgcggcgga
    16501 agataacgcg ccgcacgctc cgactcggga agaaaccgaa gcacctgccc cggcagacac
    16561 cgcttcgaca gagtccgagc agcagcctga aaacaaggct taacttcccg aacaaacggc
    16621 agcccgcaag ctgccgtttt cccatcctgt tttcagacgg cattttccgc tcaatgccgt
    16681 ctgaaacgcc aaagccgtat cggtttttgc ggatctgcga tatggcggtt taaattgaaa
    16741 tcagacgagg caaggctgta ccggtttaaa attaaaccgc tataataccg cccttcgaat
    16801 acacgcccgc attggtgatg cctgtgaaaa aagttgaaaa aaacatcttg gtgctgcacg
    16861 gcgcggacaa aatgttcgag ctggtcgata aggttgaaga ctatccgcac tttctgccgt
    16921 ggtacagcaa gaccgaggtc atcgggcgta gcggcaacga actgaaggcg cggctgttta
    16981 tggactatat gcacgttcgc caatcattcg ccacgcacaa ccgcaacatt ccgggcaggg
    17041 aaatccgtat ggaactgctc gagggtccgt tcaaaacctt acgtggaacg tggaaattta
    17101 tcgatttggg cgacgatatg tgcaaaatcg aattcaattt ggaatacgat ttttccaatg
    17161 ccgttttgtc cgccttaatt tcccccgtct tcaaccacct ttccgtcacg ctggtcgaag
    17221 cgttcgtcaa agaggcagac cgccgttatg cttgaaattg agattgtgta cgggctgccc
    17281 gaccgacagg ttttgaaaac catgcagctt gccgaaggaa caaccgtccg cgccgccgca
    17341 ctgcaaagcg gtttggacgg catatttgaa gatttaaacc tgcattccgc gcctttgggc
    17401 attttcggca aagccgtcaa agacgacacg ccgctgcgcg acggcgaccg catcgaagtg
    17461 taccgcccgc tgttgatcga ccccaaagaa gcgcgccgca aacgcgttca aaatcaagaa
    17521 gaataaccat gccgtctgaa gccttcagac agcattcgac agaaacacgg aaaatatcat
    17581 gtcaaacaca atcaaaatgg ttgtcggctt gggcaacccg ggcaaagaat acgaacagac
    17641 acgccacaat gcgggttttt ggttcctcga cgaactggcg tggaaatgga aggcttcatt
    17701 taaagaagaa aaaaaattct tcggcgaagt cgcccgtgcc gccctgcccg acggcgacgt
    17761 ttggctgctc aaacctgcca cgttcatgaa ccgttccgga caggcagttg ccgcccttgc
    17821 gcagttttat aaaatcaaac ccgaagaaat cctcgtcgtc cacgacgaac tcgacattcc
    17881 ctgcggacgg atcaaattca aactcggcgg cggcaacggc ggacacaacg gcttgaaaga
    17941 cattcaggca aaactcggca cggcagacta ttaccgtctg cgcctcggca tcggccaccc
    18001 gggcgaccgc aacctcgtcg tcggctatgt cctgaacaaa cccagtacgg aacaccgccg
    18061 acagattgac gatgccgtcg ccaaatccct gcaggccata cccgacatcc ttgccggcaa
    18121 atgggaagag gcaacccgct tcctgcacag caaatgaccc gatgccgtct gaagcccttt
    18181 cagacggcat gttcccgatt tccatatccg aacagtcatg accgaactca agcagcttat
    18241 ccaaaccgaa tccatccccg tcatcgaaga aaccctcgat ttcctgctgt acgaatgcag
    18301 catcgacgac gcaccatccg ccgaagaagt ggcacaatgg cgcgacatac ttgccgcacg
    18361 cggcggcaaa ttcctgcgcc tgtccaaaat ctgccaaacg tggctggacg aggaggcggc
    18421 atgaagctgc cgcgcaaccg cttcagcctg ctttccgcat tgtggtttgc cggcggcatc
    18481 tattcgctgc tcttcaaagc tgccgacacc gcgccgccgc cgtttccgca tttcgacaaa
    18541 gcagcacacc ttgccctgtt tttcgcacaa atctggcttt tgaccaaagc attcaaaacc
    18601 ggaaaacttc ccatccccta ccgcagcctg atggtctttg ccctctgttt cgccctcttc
    18661 agcgaatgcg cgcaggcatg gtttaccgca acgagaaccg gcagtttggg cgatgtcctt
    18721 gccgacctga cgggtgcatt gctcgcactc tttgccgcac gttccgccga ccgcccggac
    18781 tgaatcggtt tattttcccc aaacaggatg cacctcttcc cgatacatcc tatttttccc
    18841 cttacatatc aatctcatct cataaacaaa accgacaaat cgtttacaat atatttacac
    18901 tacatcagat tacaaatata ctcgaaccag ttgcagaagc ggcgattcca caaaccgttt
    18961 cggattgcac gacacaaaag aaaaaccgat tttgttgcct taaaggagta ttcatgaacc
    19021 tgcatgcaaa ggacaaaacc cagcatcccg aaaacgtcga gctgctcagt gcgcagaagc
    19081 cgattaccga ctttaagggc ctgctgacca ccattatttc cgccgtcgtc tgtttcggca
    19141 tttaccacat cctgccttac agccccgatg ccaataaagg tatcgcgttg ctgattttcg
    19201 ttgccgcact ttggtttacc gaagccgtcc acattaccgt aaccgcactg atggtgccga
    19261 ttctcgccgt cgtactcggt ttccccgaca tggacatcaa aaaggcgatg gctgattttt
    19321 ccaacccgat tatctacatt tttttcggcg gcttcgcgct tgccaccgcc ctgcatatgc
    19381 agcggctgga ccgtaaaatc gccgtcgccc tgctgcggct gtcgcgcggc agtatgaagg
    19441 ccgccgtgct gatgttgttc ctcgttaccg cctttctgtc catgtggatc agcaacaccg
    19501 ccaccgccgc gatgatgctg cctctggcaa tgggtatgct gagccacctc gaccgggaaa
    19561 aagaacgcaa aacctacgtc ttcgtcctgc tcggcatcgc ctattgcgcc agcatcggcg
    19621 gcttgggcac gctcgtcggc tcgccgccca acctgattgc cgccaaagcc ctaaatctgg
    19681 acttcgtcgg ctggatgaag ctcggcctgc cgatgatgct gttgattctg cccttgatgc
    19741 tgctctccct gtacgtcatc ctcaaaccta atttgaacga acgcgtggaa atcaaagccg
    19801 aatccatccc ttggacgctg caccgcgtga tcgcgctgtt gattttcctt gccacagccg
    19861 ccgcgtggat attcagctcc aaaatcaaaa ccgccttcgg catttccaat cccgacaccg
    19921 ttatcgccct gagtgccgcc gtcgccgtcg tcgtcttcgg cgtggcgcaa tggaaggaag
    19981 tcgcccgcaa taccgactgg ggcgtgttga tgctcttcgg cggcggcatc agcctgagca
    20041 cgctgttgaa aacatccggc gcgtccgaag ccttgggaca gcaggttgcc gccacctttt
    20101 ccagcgcgcc cgcatttttg gtgatactca tcgtcgccgc cttcattatt tttctgaccg
    20161 agttcaccag caacaccgcc tccgccgcat tgcttgtacc gattttctcc ggcatcgcta
    20221 tgcagatggg gctgcccgaa caagtcttgg tattcgtcat cggcatcggc gcatcttgtg
    20281 ccttcatgct gccggttgcc acaccgccta acgcgattgt gttcggcacg ggcttaatca
    20341 agcaacgcga aatgatgaat gtcggcatac tgctgaacat cctctgcgta gtattggttg
    20401 ctctgtgggc ttatgctgta ctgatgtaaa ccatcgacct aaacaacaag accgtctgaa
    20461 agaatatttt tcagacggcc ttgaagtttg tcgttcagac acaatttgtc gaatcattca
    20521 aaaccggatt ctaacgaaag gaaacccatg attatcctgc acaccaacaa aggcgacatc
    20581 aaaatcgaac tcgatttcga caaagccccc gttaccgcca aaaacttcga gcaatacgtc
    20641 aaagacggct tctacgacgg cgtaatcttc caccgcgtca tcaaaggctt catgattcaa
    20701 ggcggcggca tggatgaaaa catgaacgaa aaagaaaccc gcgatccgat tcaaaacgaa
    20761 gcgtccaacg gcctgcccaa cgataaatac accatcgcca tggcacgcac ttccgacccc
    20821 cattccgcca gcgcgcaatt cttcatcaac actgccgaca acgctttcct gaacttccgt
    20881 tctaaagagc tgtacggcaa aaccgtcgtc caagactggg gctatgccgt attcggtaaa
    20941 gtcgttgacg gttttgacgt tgtcgatgcc atcgaaggcg tatccaccaa acgccacggc
    21001 taccatgacg acgtaccgag cgaacctgtc gtcatcatta aagccgaagc ggtataaacc
    21061 ggcaatccga aagcagcctg cacaaaggct gctttttttg tttcaggcgg cataaaatcc
    21121 aagcacatat gccgtctgaa cacctcccgc aagccttcgg acaatgttgc aacgtgttaa
    21181 aatagcctcc tttcctgaaa ccgaaacgag ggaaccccta tggcaaatat cgcccacgac
    21241 attttcaaag cctacgacat ccgaggcatc gtcggtaaaa ccctgaccga cgaagctgcc
    21301 tatttaatcg gcaaagccat tgccaccaaa gcctccgaaa aaggcattac ccgcatcgcc
    21361 ctcggccgcg acggccgttt gagcggcccc ggcctgatgg cacaaattca acacggtttt
    21421 acagacagca gcatcgacgt cctcaacgtc ggcatgattg ccactcctat gctctacttc
    21481 gcagccatca acgaatgcgg cggcagcggc gtgatgatta ccggcagcca caatccgccc
    21541 gattacaacg gtttcaaaat gatgctcggc ggcgacacgc tcgcaggcga agccattcaa
    21601 gaacttttag ctattgttga gaaagacggt tttgttgccg ccgacaaaca aggcagcgta
    21661 accgaaaaag acatctccgg cgaataccac aacaacatcg tcggccacat taagctcaaa
    21721 cgtccgatga aaatcgtgat tgacgcgggc aacggtgtcg gcggcgcgtt tgccggcaaa
    21781 ctctacaaag gtttgggcaa tgaagtggcc gaacttttct gcgaagtgga cggcaatttt
    21841 cctaatcacc accctgatcc ttccaaaccc aaaaacctgc aagatttgat tgccgcgctg
    21901 aaaaacagcg atgccgaaat cggcttggct tttgacggcg atgccgaccg cttgggcgtg
    21961 gtcaccaaag acggcaacat tatttatccc gaccgccaat taatgctgtt cgcccaagac
    22021 gtgttgagcc gcaatcctaa agcaaaagtg attttcgatg tcaaatccac ccgcctgctg
    22081 accccgtgga ttaaagaaca cggcggcgaa cctgtgatgg aaaaaaccgg ccacagcttt
    22141 atcaaatccg ccatgaaaaa aaccggcgcg ctggttgccg gcgaaatgag cggacacatc
    22201 ttcttcaaag aacgctggtt cggcttcgac gacggtctgt acgccggcgc acgcctcttg
    22261 gaaatcctgt ctgcctccga taatccgtcc gaagtgttaa acaacctgcc gcaaagcatt
    22321 tccacgcccg aactcaacat cgccctgccc gaaggcagca acggccatca ggttatcgac
    22381 gaactcgccg ccaaagccga atttgaaggc gcaaccgaaa tcatcaccat cgacggtctg
    22441 cgcgttgaat ttcccgacgg cttcggtctg atgcgtgctt ccaataccac gccgattctg
    22501 gtgttgcgtt ttgaggcgga tacgcaagaa gccatcgagc ggattcaaaa ccaattcaaa
    22561 gccgtcatcg aaagcaatcc gaatctaatc tggcctctgt aaacacagga aaaatgctta
    22621 atcaaatctt ggtagattgg atttggctta aaaatctccg cgtccgttcg tgtttggggt
    22681 ggtcgaacaa ctctttcggg ctgccctgct ctacgataac gccgccgtcc atcacgacaa
    22741 cggtcgtggc aacttccagc gcgaacttga tttcgtgggt aacgacgacc atcgtccaac
    22801 cttcccgcgc caattccttc atggcgttca acacgtcttg caccaattca gggtcgagtg
    22861 cggaagtggg ttcgtcaaac aacatcagct cgggctgaat cgccaatgcg cgggcaatgc
    22921 cgacgcgctg ctgctgaccg ccggaaagct ggtagggata caaatccact ttgtcgccca
    22981 agccgacttt ttccagcagt ttcagagcct cttcgcgcgc ttgggcggca ggcttgccct
    23041 gtacggcaac cggtccttcc attacgtttt ccaaggcggt tttgtgcgga aagaggttgt
    23101 attgttgaaa caccatgcct gatttgcggc gtagtgccaa aatatcgtgt ttgcttggtt
    23161 ttttagaaaa atcgattttc agcggtcgct cgttgtcgaa ctcgatttgt ccgtcttcgg
    23221 gcatttccaa cgcgtttagg catcgcagaa acgtcgtttt gcctgagccg gaaggcccga
    23281 ggataacgac cacctgccct ttgcccacat ccaaattgat gccgcgcaaa atagtgcttt
    23341 cgccgaaggt cttatggata ttgcggattt taatcataac aactccttat ttggcgacat
    23401 aacggtcgaa acgtttttcc aaacgtgcct gaatcaggaa cagaaccttg caaaaacacc
    23461 agtaaaccaa agcggcttcg atatagacgg gcaaaaagtc ataagtgcgg tttgccgttt
    23521 cctgcgcgac gcggaataat tccgttaccg tcacgactgc cgcgagcgag gtgtttttaa
    23581 acaaaccgat aaactcgttg ctcaaaggcg gcacggcaac gcgaaatgcc tgcggcgcga
    23641 cgatgcggcg gaacgtctgc atataggtca taccgatgga gaaacctgct tcccattggc
    23701 ctttaggtac ggacaaaatt gccgcgcgta tggtttcgga agcgtatgca ccgacattga
    23761 gcgagaagcc gataatggcg gcgggaatcg gatcgatata gataccgacg gaaggcagcc
    23821 cgtaaaacac aatcacaagc tgaaccaaca gcggcgtacc gcgaatgacg gaaatataaa
    23881 attccaccaa tttcagcagg attttccgca cgatgccgcc ggcgggcata atccgcacca
    23941 aagccacggc taccgcaatc atcataccga taacgaaaga agctgccgcc aaaggcagag
    24001 agaccgcgaa gccggctttg accataggca aaaacgcgct gacaatcata tcggcgcgtg
    24061 tttccgtcat aaacggcagc gaagcaagga aattattgaa cactgatgtc ttttccgaag
    24121 aattgttcgc ccagtttttt cagcgtaccg tcggctttca gctcgttgat tgccgtactg
    24181 aatttcgcca cggcttcgtc attgcccttg ttgacaatca ggccggaacc gactttttca
    24241 tcggcaggtg cggaccaaac gattttcacg cccgcattcg ggtttttctt cagatagtcc
    24301 aaaaccgcca attcgtcgtt cagggttgca tcggcacgtt tttgttcaat cagggtcagc
    24361 gattgcgcca aaccgtccac tgccaccaaa tctgcgcctg cagctttggc tttttcgccg
    24421 tagttgctgg tcagggattg tgcggttttc acgcctttga tgtcgtcgat agatttgatg
    24481 ttgctgtcgt tacgggcaac caatacggca ccgctccagc tgtaaggatc ggatttgtcg
    24541 aatgtcgctt ggcgttcggg gctggtcaga ccgacttggt ttgccaccac gtcgaaacgc
    24601 cccgccttca aacccgccat catcgaatcc cattgcgttt ctttaaactc gactttcacg
    24661 cccagttttt ccgccacggc gcgggttact tccacatcgt aaccggtcag tttgccgtcc
    24721 ttgtcgtggt aggtaaacgg tgcgtaagtg ccttccgtgc cgacggtaac cgtgccttta
    24781 ttgttgatgc gctcgattaa agaaccggaa actgccgatt gtgcaggcgc ggaagatgct
    24841 ccgctgccgc tttccgaacc gccgcaggcc gccaaaacca atgcggcaat gccgccgagt
    24901 acgaattttt tcaacatcat tctctcctgt aaaaagtgtg caagtgcggc attctaagtg
    24961 aaattgcggc aaacacaaag aatacttttt ttatatggtt attccaaatc ggaatggaaa
    25021 agatatgccg aaaccgccgg aagcggaaat aaagggggcg ggaaaggcga cgggcggcac
    25081 gaaaccgaaa agcggcatca ggtatgcaaa cggcggattc acgcacgccg ttccggcaaa
    25141 aatccgcctg ccgattcggt gctataatcc atccgaaaca gatgacacca aaaaggaaca
    25201 tctcatgaac acgccccaat ccgccatcat tcccgaccac gcccaagccg gcatctttat
    25261 cgaagccgac ttcgccgcca accgcctcaa cgatattaaa gccgcctgcc gcgcttcgct
    25321 cgacgcgtta actgccttga aagcccgctt tccggacgat attttgggtc tgaccatcgc
    25381 cttcggcagc aaagcctggg caacattcgg acatacggac gaaggcagtg aaatcaaacc
    25441 cttctccgaa atgggcaacg ggcttgcgcc gtccacgcag cacgatatgt ccatccacat
    25501 ccaatccttc cgccaaaacg ccgcctacgc gcttgcccaa tccgttttag gcgcgttcgg
    25561 cgacagcata tgcgtcgcgt ccgaagaaca cggtttgcgc ctgtatcagg atcgcggact
    25621 ggacggtttc gtcgacggca cggaaaaccc gcagggcgat gaaaatgtcc gcgaagtcgc
    25681 catcatcccc gaaggaaaac ccgatgcggg cggcagctat gtcctgctgc aaaaatacct
    25741 gcacgatttg aaaaaatggg atgccgtccc cgtcgccgaa caggaggcct cggtcggacg
    25801 cggcaaggaa accgacgacg aattcggccg cgatgtccgc ctgcccgatt cgcacctcgg
    25861 ccgcgtcaac ctgaaagaaa acggagtcgg cctgaaaatc gtccgccgca gcctgccctt
    25921 cggcaaaatc agcggcgaac acggtttgat gtttaccgca tactgccgca cgctgcacaa
    25981 tatcgaagcg caattattga gtatgttcgg cgatacggac ggcaaaaccg acctgctgct
    26041 ccgacacctc tccgccgccg tttcgggcgg atactactac gcgccgtctg tcgaacgcct
    26101 gcaaaacctc taagccggac gatgccgtct gaaaccattt ttcagacggc atttt
//
LOCUS       DAXIFD010000008        24126 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.008, whole genome shotgun sequence.
ACCESSION   DAXIFD010000008 DAXIFD010000000
VERSION     DAXIFD010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24126
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.008"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(204..1097)
                     /locus_tag="ACFOCN_000268"
     CDS             complement(204..1097)
                     /locus_tag="ACFOCN_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6969483.1"
                     /translation="MPHPCQTVHTLTARVPKCRLKLNAARRQRYNRPQLFFPNIIMTT
                     TEHDNDDAFLLRYSRHILLDEIGIEGQQKLSAAHILVVGCGGLGAAALPYLAASGIGT
                     LTIADSDTVELHNLQRQVAFDEGDVGKPKAEALADRLKRINHNVDVRTVNEKLDGCRL
                     TGLVQTADIVLDCCDNYATRQAVNRVCVQTKTPLVSGAAVRFEGQLAVYRPDLPDSPC
                     YACLFDGGSASDGICSLFGVFSPLVGIIGCTQAAEALKILLDVGEPSHGRLAVYRALE
                     GGWQYFDLPRNPECPICGTER"
     gene            1140..3842
                     /gene="ppc"
                     /locus_tag="ACFOCN_000269"
     CDS             1140..3842
                     /gene="ppc"
                     /locus_tag="ACFOCN_000269"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HFC6969484.1"
                     /translation="MQLHILNNPKDAALAADAEFLKQSLFNLLHEEASPLVVETVKLL
                     STSDDSAALIEKVLPQLDEQQTHDLTLACGLFAQILNIAEDVHHERRRQIHEEAGRGG
                     AEGSLTETVRRLKAGKADGKSVQRQLDNTSVTAVLTAHPTEVQRQTVLSFNRRIRALL
                     PQRERCTNADALARLRREIDTILLGLWQTSETRRHKLSVNDEINNGVSIFPMSFFEAL
                     PKLYRNMEHDFQMVYPDVCVPNILKIGGWIGGDRDGNPFVSAETLRFAFRRHADAVFR
                     FYRGELDKLYRELPLSIRRVKVNDDVMALAALSPDEELARTEEPYRRAIAYIMARAMG
                     KARALGLGMGCKFGFLEPYASAQEFLDDLKKLQRSLIDNGSRLLAEGRLADLIRSVSV
                     FGFHMMPLDLRQHAGKHADVVAELFQHAGLEDYNSLNEEQKQAVLLRELSHQRPLYSP
                     FITYSDHTRHELAIFNEARKIKDEFGEDAVTQSIISNCEQPSDLLALALLLKESGLLA
                     VENGKPHSRINIVPLFETIEALENACPVMETMFRLDWYDALLESRGNIQEIMLGYSDS
                     NKDGGYVTSSWCLYQAELGLVELFKKYDVRMRLFHGRGGSVGRGGGPSYQAILAQPAG
                     SVAGQIRITEQGEVITAKYADPGNAQRNLETLVAATLEASILPDKKDPDAKLMQALSD
                     VSFKYYRELITHPDFIDYFLQTSPIQEIATLNLGSRPASRKTLARIQDLRAIPWVFSW
                     MQNRLMLPAWYGFGSAVETLCEGNPDTLTALREHAQSNPFFQAMLSNMEQVMAKTDIT
                     LAENYAGLSESPDKAKIIFGMIKEEYRRSRKALLDLLQTEELLRDNRSLARSLALRIP
                     YLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG"
     gene            3965..4954
                     /locus_tag="ACFOCN_000270"
     CDS             3965..4954
                     /locus_tag="ACFOCN_000270"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase (FAD) complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HFC6969485.1"
                     /translation="MKITVIGAGSWGTALALHFSQHGNRVSLWTRNADQVRQMQEARE
                     NKRGLPGFSFPETLEVCADLADALKDSGLVLIVTSVAGLRSSAELLKQYGAGHLPVLA
                     ACKGFEQDTGLLTFQVLKEVLPDNKKIGVLSGPSFAQELAKQLPCAVVLASENQEWIE
                     ELVPQLNTTVMRLYGSTDVIGVAVGGAVKNVMAIATGLSDGLEYGLNARAALVTRGLA
                     EITRLASAMGAQPKTMMGLAGIGDLILTCTGALSRNRRVGLGLAEGKELHQVLVEIGH
                     VSEGVSTIEEVFNTACKYQIDMPITQTLLQLIRKEMTPQQVVERLMERSARFE"
     gene            5009..5338
                     /locus_tag="ACFOCN_000271"
     CDS             5009..5338
                     /locus_tag="ACFOCN_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969486.1"
                     /translation="MKQNIEKLESSVYTLVQKFETLVSENRRLKETVAELKRAHERQK
                     LEHETAVDELSEALLVQVGKLKEDLQNKIDSLTEENTRYRSLLEQSREKISALAARLP
                     QWQETQQ"
     gene            5349..5654
                     /locus_tag="ACFOCN_000272"
     CDS             5349..5654
                     /locus_tag="ACFOCN_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HFC6969487.1"
                     /translation="MNIEQVHIEVMHARLTVNTPAEEKDTLLQAVGMLNGKAEAIREG
                     GRVADSEKIVIMAALNVVHDLLKTSLNGGDLAIGDFARKIADMDNACQKALSRLAQE"
     gene            5660..5839
                     /gene="ssrS"
                     /locus_tag="ACFOCN_000273"
     ncRNA           5660..5839
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="ACFOCN_000273"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            6017..6448
                     /gene="rplM"
                     /locus_tag="ACFOCN_000274"
     CDS             6017..6448
                     /gene="rplM"
                     /locus_tag="ACFOCN_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HFC6969488.1"
                     /translation="MKTFSAKPHEVKREWFVIDAQDKVLGRVAAEVASRLRGKHKPEY
                     TPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFREMQEQFPGRALE
                     QAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLELK"
     gene            6458..6850
                     /gene="rpsI"
                     /locus_tag="ACFOCN_000275"
     CDS             6458..6850
                     /gene="rpsI"
                     /locus_tag="ACFOCN_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HFC6969489.1"
                     /translation="MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETS
                     RMVVRQPLVLTENAESFDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAG
                     FVTRDAREVERKKPGLRKARRAKQFSKR"
     gene            complement(7106..8035)
                     /locus_tag="ACFOCN_000276"
     CDS             complement(7106..8035)
                     /locus_tag="ACFOCN_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6969490.1"
                     /translation="MDSIIELRHLKTLLALEETGSVSLAAKRVFLTQSALSHQIRMLE
                     NHYGAPLFERKSTPLRFTPVGERLLRLAHDLLPQVTDAERDLARIIEGEAGELRIAVE
                     CHTCFDWLMPAMGEFRPIWPQIELDIVSGFQADPIGLLLQHRADLAIVSEAEKQNGIS
                     FQPLFAYEMVGICAPDHPLAAKTVWEAEDFIGETLITYPVPDEMLDLPKKILIPKNIN
                     PPRRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIR
                     TEDTDKSYLNNFCQIIRERGFADLPGLSELEPV"
     gene            8166..8915
                     /locus_tag="ACFOCN_000277"
     CDS             8166..8915
                     /locus_tag="ACFOCN_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HFC6969491.1"
                     /translation="MVLRRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVT
                     ASRAAIDFAVEQKADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLD
                     AHPTLGNNAQLADRLGFATEKRFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVI
                     GKPEREIRRVAWCSGGAQGFFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHH
                     ATERYGVRALAESAAEVFGLEVCHFDENNPA"
     gene            9038..9619
                     /gene="petA"
                     /locus_tag="ACFOCN_000278"
     CDS             9038..9619
                     /gene="petA"
                     /locus_tag="ACFOCN_000278"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HFC6969492.1"
                     /translation="MDNQEINNGRRRFLTLATCGAGGVAALGVATPFVASFFPSEKAK
                     AAGAAVEVDVSKIEAGQLLTAEWQGKPIWVLNRTDQQLKDLKGLNGELTDPNSDAEQQ
                     PEYAKNETRSIKPNILVAIGICTHLGCSPTFRPDIAPADLGADWKGGFFCPCHGSKFD
                     LAGRVYKGVPAPTNLVVPPYKYLSDTTILVGED"
     gene            9638..10987
                     /locus_tag="ACFOCN_000279"
     CDS             9638..10987
                     /locus_tag="ACFOCN_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HFC6969493.1"
                     /translation="MANQTNSKAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYY
                     FGSLALLVLVIQIVSGIFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMH
                     STGASFFFIVVYLHMFRGLIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMS
                     FWGAQVIINLFSAIPVIGPDLSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAH
                     IIALHEVGSNNPDGVEIKKNKDENGIPRDGIPFHPYYTVKDILGVVVFLIVFCAVLFF
                     APEGGGYFLEAPNFDAANALKTPPHIAPVWYFTPFYAILRAIPSFLGTQVWGVIGMGA
                     AVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGILGAMVATDTRTLVARI
                     LSFVYFAFFLGMPFYTKLDKNKPVPERVTMSTAKQKIMFFVYVGITAVGAYLFATNI"
     gene            11002..11790
                     /locus_tag="ACFOCN_000280"
     CDS             11002..11790
                     /locus_tag="ACFOCN_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HFC6969494.1"
                     /translation="MKQAMKNWFAALLLAVPMGAAFASGGHAHYEKVDIDLRDQVSLQ
                     RGAQIFTNYCLSCHSASGMRFNRLKDIGLTDEEIKKNLMFTTDNVGDVMHSAMNPKDA
                     AKWFGAAPPDLTLIARSKGADYLYAYMRGFYKDPTRPSGWNNTVFDKVGMPHPLWEQQ
                     GVQAVELDAKGQPVMVKDEHGEMKPKLYWESTGLHSRRLPNGKVIQKEYDAYVRDLVN
                     YLVYMGEPAQLQRKRIGYVVMIFLFAVMLPLAYFLKKEYWKDVH"
     gene            12129..13913
                     /gene="rmuC"
                     /locus_tag="ACFOCN_000281"
     CDS             12129..13913
                     /gene="rmuC"
                     /locus_tag="ACFOCN_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HFC6969495.1"
                     /translation="MELMTVLLPLAALVSGVLFTWLLMKGRFQGEFADLNAQLAEKAA
                     RCDFVEQAHAEIASELAVLDGKYRHLQDENYALGNRFSAAEKQIAHLQEKEAESVRLK
                     QSYIELQEKAQGLAVENERLATQLGQERKAFADQYALERQIRQRIETDLEESRQTVRD
                     VQNDLADVGNRFAAAEKQIAHLQEKEAEAERLRQSHTELQEKAQGLAVENERLATQIE
                     QERLASEEKLSLLGEARKSLSDQFQNLANTILEEKSRRFTEQNREQLHQVLNPLNERI
                     HGFGELVKQTYDKESRERLTLENELKRLQGLNAQLHSEAKALTNALTGTQNKVQGNWG
                     EMILETVLENSGLQKGREYVVQAASVRKEEDGGTRRLQPDVLVNLPDNKQIVIDSKVS
                     LTAYVRYTQAADADTAARELAAHVASIRAHMKGLSLKDYTDLEGVNTLDFVFMFIPVE
                     PAYLLALQHDAGLFQECFDKRIMLVGPSTLLATLRTVANIWRNEQQNQNALAIADEGG
                     KLYDKFVGFVQTLESVGKGIDQAQSSFQTAFKQLAEGRGNLVGRAEKLRLLGVKAGKQ
                     LQRDLVERSNETTALSESLEYAAEDEAV"
     gene            complement(14120..14752)
                     /locus_tag="ACFOCN_000282"
     CDS             complement(14120..14752)
                     /locus_tag="ACFOCN_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFC6969496.1"
                     /translation="MTLRYEIFPVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQAL
                     ANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPVLGPHPDDEFLLQSLPQTTAQYGFP
                     VSPAFAPNRWLEEGETLTVGRYAFQVLHIPGHTPGHIVFYCAEAELLIAGDVLFYETI
                     GRTDFPRGNHADLINNIRNKLFTLPETVQVVAGHGRMTSIGHEKRHNPFF"
     gene            14844..15668
                     /locus_tag="ACFOCN_000283"
     CDS             14844..15668
                     /locus_tag="ACFOCN_000283"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HFC6969497.1"
                     /translation="MIKKTIGGIIPIFTAVFIPASAGAADLMLAQEYKGQDIAGWAMS
                     EKLDGVRAYWDGKHLVSRQGYVFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRS
                     ASSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRQHAMDF
                     LKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGA
                     VGCKNRYGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTQKGTPKFATFVRVRTDR"
     gene            15737..16300
                     /locus_tag="ACFOCN_000284"
     CDS             15737..16300
                     /locus_tag="ACFOCN_000284"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HFC6969498.1"
                     /translation="MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGG
                     KYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIR
                     GRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVP
                     NRYVFGYGMDAAGCWRNLGEIYALDGK"
     gene            16381..16818
                     /locus_tag="ACFOCN_000285"
     CDS             16381..16818
                     /locus_tag="ACFOCN_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HFC6969499.1"
                     /translation="MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQD
                     DIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAV
                     QYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV"
     gene            16887..17156
                     /locus_tag="ACFOCN_000286"
     CDS             16887..17156
                     /locus_tag="ACFOCN_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HFC6969500.1"
                     /translation="MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNG
                     KSIMGLMMLAAAKGTVIELETDGADEAEAMRALTDLINGYFGEGE"
     gene            17156..18931
                     /gene="ptsP"
                     /locus_tag="ACFOCN_000287"
     CDS             17156..18931
                     /gene="ptsP"
                     /locus_tag="ACFOCN_000287"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HFC6969501.1"
                     /translation="MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAE
                     RFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKIN
                     AEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDE
                     TVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLIT
                     EGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIEL
                     VGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYNAIVKKMKGKSV
                     TIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVH
                     GPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSI
                     LKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVS
                     VCGEMAGDTAFTRILLGMGLRRFSMNPNNILPVKNIILHSNIAQLENEIAKIVRCEDE
                     EKAEKLIKQMNSVSVEEEADFKGRK"
     gene            complement(19425..19634)
                     /locus_tag="ACFOCN_000288"
     CDS             complement(19425..19634)
                     /locus_tag="ACFOCN_000288"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969502.1"
                     /translation="MPSENLSDGIFLPKQPYFLSGLQNLSETTETTLPSFPQKRESRT
                     QHGKNLSEATTIFSSSFPQKRESRT"
     gene            complement(19652..20590)
                     /locus_tag="ACFOCN_000289"
     CDS             complement(19652..20590)
                     /locus_tag="ACFOCN_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6969503.1"
                     /translation="MLELNGLCKRFGNKTVADNICLTVGRGKILAVLGRSGCGKSTLL
                     NMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQK
                     MPKAEAERLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFS
                     SLDTHLRDRLRRMTAERIRKGGIPAVLVTHSPEEACTAADEIAVMHEGKILQCGTPET
                     LVQTPAGVQVARLMGLPNTDDDRHIPQHAVRFDQDGMECRVLSRTCLPESFSLSVLHP
                     EHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR"
     gene            complement(20599..21474)
                     /locus_tag="ACFOCN_000290"
     CDS             complement(20599..21474)
                     /locus_tag="ACFOCN_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6969504.1"
                     /translation="MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNGLPLGN
                     LSPEWAERVKKDWEAGCSESSDGIFLNADGWSDMGGRLQHLTRTWNKAGLLHGWRNEC
                     FDLTDGGGNILFSLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGRRSPHKAVDPDK
                     LDNTAAGGVSSGELPSETVCRESSEEAGLDKTLFPLIRPVSQLHSLRPVSWGVHNEIL
                     YVFDAVLPETFLPENQDGEVACFEKMDIGSLVATMLSGNMMHDAQLVTLDAFCRYGLI
                     DAAHPLSEWLDGIRL"
     gene            complement(21656..21732)
                     /locus_tag="ACFOCN_000291"
     tRNA            complement(21656..21732)
                     /locus_tag="ACFOCN_000291"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21696..21698),aa:Met,seq:cat)
     regulatory      21882..21981
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            22072..23973
                     /gene="thiC"
                     /locus_tag="ACFOCN_000292"
     CDS             22072..23973
                     /gene="thiC"
                     /locus_tag="ACFOCN_000292"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HFC6969505.1"
                     /translation="MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRD
                     DIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLNE
                     RGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKSGGNVTQLHYARRGIITPE
                     MEFVAIRERLKLDELSQKSEYAKLLKQHAGQSFGANIPTHPDQITPEFVRREIAAGRA
                     IIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDL
                     STGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVD
                     YFTIHAGVLLRYVPMTADRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAY
                     DVSFSLGDGLRPGCIADANDESQFAELHTLGELTSKAWKHDVQVMIEGPGHVPLQRVK
                     ENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHL
                     GLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPE
                     RAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEF
                     VKKGAKIYS"
BASE COUNT         5956 a         6478 c         6520 g         5172 t
ORIGIN      
        1 aaattttcag gttgtgtttt tgcaatccgt ggatttcgcc cgcccgtcag ggaaaaggcg
       61 attatttttt gcttaggcaa acaattatcc tgttgagtat attgaagata agtatgctta
      121 tcgacactat gtcaaaacac cgccgatttt taaaaccgtt cctccgcatc cgtctttatg
      181 ccgtctgaaa cggcggcagg gttttaccgt tccgtgccgc aaatcgggca ttcggggttg
      241 cgcggcaggt cgaaatattg ccagccccct tccaaggcac ggtaaaccgc cagcctgccg
      301 tgcgacggtt cgcccacgtc tagcaggatt ttcagagcct ccgccgcctg cgtgcagccg
      361 atgatgccga ccagcggcga gaatacgccg aagagggaac agatgccgtc tgaagccgat
      421 ccgccgtcaa acaggcaggc gtaacacggc gagtcgggca agtcgggacg gtacacggca
      481 agttgccctt caaagcgcac cgctgctcct gaaaccagcg gtgttttcgt ttgtacgcag
      541 acacggttga cggcttggcg cgtggcgtag ttgtcgcagc agtctaaaac gatgtcggcg
      601 gtttgaacca aaccggtcag gcggcagccg tcgagttttt cgttgacggt gcggacatcg
      661 acgttatggt tgatgcgttt caggcggtct gccaaggctt cggctttggg cttgccgaca
      721 tcgccctcgt caaatgcgac ttggcgttgc aggttgtgca gctcgaccgt gtcggaatcg
      781 gctatggtca gcgtgccgat gccggaagcg gcgagatagg gcagggcggc ggcacccaaa
      841 ccgccgcagc cgacgaccaa aatatgcgcg gcggaaagtt tctgctgccc ttcgatgcca
      901 atttcgtcca agaggatgtg gcggctgtac cgcagcagga atgcatcgtc gttgtcgtgt
      961 tcggtcgtgg tcatgatgat gttcggaaaa aacagttgtg ggcgattgta acgctgccgt
     1021 cgggcggcgt tcaacttcag acggcatttc gggacacggg cggttaaagt gtgaacggtt
     1081 tggcacggat gcggcatttg aggtacattt acagtattta cggcaatgag agaaaaatca
     1141 tgcaactgca tattctgaac aatccgaagg acgcggcttt ggcggcggac gcggaatttc
     1201 tgaaacaatc cctgttcaac ctcctgcacg aagaagcctc gccattggtt gtcgaaacgg
     1261 tcaaactctt gtccacttcc gacgacagcg cggcattgat tgaaaaagta ttgccgcaat
     1321 tggacgaaca acaaacccac gatttaacct tggcctgcgg cctgttcgcc cagattttga
     1381 atatcgccga agacgtgcac cacgaacgcc gccgccaaat ccacgaagaa gccggacgcg
     1441 gcggcgcgga aggcagcctg acggaaaccg tccgcaggct caaagcgggg aaagccgacg
     1501 gcaaatcggt gcagcggcag ttggacaata cgtccgttac cgccgttttg accgcgcacc
     1561 cgaccgaagt gcaacgccaa accgtcttaa gcttcaaccg ccgcatccgc gcactgttgc
     1621 cgcaacgcga acgctgcacc aatgccgacg cgctggcacg gctgcgccgc gaaatcgaca
     1681 ctatcctgct gggcttgtgg cagaccagcg aaacgcgccg ccacaaactc agcgtcaacg
     1741 acgaaatcaa caacggcgtg tccatcttcc cgatgagctt tttcgaagcc ctgcccaagc
     1801 tctaccgcaa tatggaacac gactttcaga tggtctatcc cgatgtctgc gttccgaata
     1861 tcctcaaaat cggcggctgg atcggtggcg accgcgacgg caatccgttc gtttctgccg
     1921 aaaccttgcg ttttgccttc cgccgccacg ccgatgccgt gttccgtttt taccgtggcg
     1981 aactcgacaa actttaccgc gaactgccgc tctccatccg ccgcgtcaaa gtcaacgacg
     2041 acgtaatggc actggcagcc ctctcgcctg acgaagaact tgcccgcacg gaagaaccct
     2101 accgccgcgc cattgcttac atcatggcgc gcgctatggg caaagcgcgc gcgctcggtt
     2161 tgggcatggg ctgcaaattc ggctttctcg agccgtatgc ttcggcacaa gaatttctcg
     2221 atgatttgaa aaaattgcaa cgttccctta tcgacaacgg cagccgcctg cttgccgaag
     2281 gccgtttggc agacctcatc cgttccgtgt ccgtgttcgg cttccacatg atgccgctcg
     2341 acctgcgcca acacgcaggc aaacacgccg atgtggttgc cgagcttttc caacacgcag
     2401 gcttggaaga ctacaacagc ctgaacgaag aacaaaaaca agccgtcctg ttgcgagaat
     2461 tgagccatca acgtccgctg tacagcccgt tcatcacata cagcgaccat acccgccacg
     2521 aactggcaat tttcaacgaa gcgcgcaaaa tcaaagacga atttggcgaa gatgccgtaa
     2581 cacaaagcat tatttccaac tgcgaacaac ccagcgacct gctcgccttg gcattgctgc
     2641 tgaaagaaag cggcctgttg gcggtggaaa acggcaaacc gcacagccgc atcaatatcg
     2701 tgccgctgtt tgaaaccatc gaagcactcg aaaacgcctg tccggtcatg gaaaccatgt
     2761 tccgcctcga ttggtacgat gccctgctcg aaagccgcgg caacatccaa gaaattatgc
     2821 tcggctactc cgactccaac aaagacggcg gctatgttac cagctcatgg tgtctgtatc
     2881 aggcggaatt gggcttggtc gaactcttca aaaaatacga tgtccgcatg cgcctgttcc
     2941 acggtcgcgg cggcagcgtc ggacgcggcg gcggcccgtc ttaccaagcc attctcgccc
     3001 aaccggcggg cagcgtggcg ggacaaatcc gcattaccga acaaggcgaa gtcattaccg
     3061 ccaaatacgc cgaccccggc aatgcccaac gcaacttgga aaccttggtt gccgcgactt
     3121 tggaagccag catcctgccg gataaaaaag accctgatgc caaactgatg caggcattgt
     3181 cggacgtatc gttcaaatac taccgcgaac tgattaccca tcccgacttc atcgactact
     3241 tcctgcaaac cagcccgatt caggaaatcg ccaccctcaa cctcggcagc cgtcctgcca
     3301 gccgcaagac cttagcgcgg attcaagact tgcgcgcgat tccgtgggta ttttcctgga
     3361 tgcagaaccg cctcatgctg cctgcttggt acggtttcgg cagcgcggtg gaaaccttgt
     3421 gcgaaggcaa tcccgacaca ctgaccgccc tgcgcgaaca tgcccaaagc aatccgttct
     3481 tccaagccat gctctccaat atggagcaag tgatggcgaa aaccgacatc accctcgcgg
     3541 aaaactatgc cggcttgagc gaatcgcccg ataaggcaaa aatcatcttc gggatgatta
     3601 aggaagaata ccgccgcagc cgcaaagcac tgctcgacct gctgcaaacc gaagagcttt
     3661 tgcgcgacaa ccgcagcctc gcccgttcgc tcgctttgag gattccatac ctgaacgcgc
     3721 tcaacggttt gcaagtcgcc atgctcaaac gcctgcgtaa agaacccgac aatccgcacg
     3781 cccttctgat ggtgcacctg accatcaacg gcgtggcgca aggtttgcgc aatacaggct
     3841 gatagtgccg catcggggca aaatgccgtc tgaacgcctt tcagacggca tttccctgac
     3901 cgcacttgca gagaaacacc gattgtttta aagtgaacgg cagtgatatg ttgaaagacg
     3961 accaatgaaa attaccgtta tcggcgcagg ttcgtggggt acggcgctcg ccctgcactt
     4021 ttcccaacac ggcaaccgcg tatccctgtg gacgcgcaac gcagaccaag tccgccaaat
     4081 gcaggaagcg cgtgaaaaca aacgcggact gcccggcttt tcctttcccg aaaccttgga
     4141 agtgtgtgcg gatttggcag acgcgctcaa agacagcgga cttgtcctta tcgtaacctc
     4201 cgttgccgga ttgagaagca gcgcagagct gctcaaacag tacggcgcgg gacacctccc
     4261 cgtcctcgcc gcctgcaaag gattcgagca ggatacaggg ctgctgacct ttcaagtatt
     4321 gaaagaagta ttgcccgaca ataaaaaaat cggcgtactt tccggtccga gttttgcaca
     4381 ggaactcgcc aaacaactgc cctgcgccgt cgtcctcgcc tccgaaaacc aagagtggat
     4441 tgaagaactc gtaccgcagc tcaacacgac cgtcatgagg ctttacggca gtaccgatgt
     4501 tatcggcgtg gcagtcggcg gcgcggtaaa aaatgttatg gcgattgcca ccggattgtc
     4561 cgacggtcta gagtacgggc ttaacgcccg tgccgcactg gttacgcgcg gattagctga
     4621 aatcacccgc cttgcctccg caatgggcgc acagcccaaa accatgatgg ggctggcagg
     4681 catcggcgac ctcatcttga cctgcaccgg cgcactctca cgcaaccgcc gcgtcggctt
     4741 gggtttggca gaaggcaagg aactgcatca ggtgctggtc gaaatcggac acgtttccga
     4801 aggggtcagc acgatagaag aagtcttcaa tactgcctgt aagtaccaaa tcgacatgcc
     4861 gattacccaa accctgctgc aactcatccg caaagaaatg accccgcaac aggtcgtcga
     4921 aaggctgatg gaacgcagcg cgcgttttga ataaacaaca gacagatgcc gtctgaagcc
     4981 ttcagacggc atacggacag gtaaggttat gaaacaaaat atcgaaaaac tcgaaagcag
     5041 cgtttatacg ctggtacaaa aattcgaaac cctcgtcagc gaaaaccgcc gcctcaaaga
     5101 aaccgtcgcc gaactcaaac gggcgcacga gcggcaaaaa ctcgaacacg aaaccgccgt
     5161 cgacgaactc agcgaagccc tgctcgtcca agtcggcaaa ctcaaagaag acctgcaaaa
     5221 caaaatcgac agcctgacag aagaaaatac acgataccgc agcctgctcg aacagagcag
     5281 ggaaaaaatc agcgcactgg cagcgcgcct cccccaatgg caggaaacgc agcaataagg
     5341 attaaaggat gaacatcgaa caagtccaca tcgaagtcat gcacgcccgg ctgaccgtca
     5401 acacgccggc agaagaaaaa gacacactgt tgcaggcagt cggaatgctc aacggcaaag
     5461 ccgaagccat ccgcgaaggc ggacgcgtcg cggacagcga aaaaatcgtc attatggccg
     5521 cgctcaacgt cgtccacgac ctgttgaaaa cctccctgaa cggcggcgat ttggcaatcg
     5581 gcgattttgc gcgtaaaata gccgatatgg acaacgcctg ccaaaaagca ctatcccgct
     5641 tggcgcagga ataacccctt tttccctgcg gtgtccgcga aggcatatat tcctttgaac
     5701 caataagttc gcttaaggtt gccgggagca gtagtgggcg cgagcgtcct tttgcggacg
     5761 cacccgaaac tacccgaggc agccgccttg tcagcaaggt tcaagcggat tcggccgaaa
     5821 cggctctcgc ggggattccc attcaaaacc gcatcgcaac gatgcggttt ttcacattgg
     5881 ccgccgcccc gcccgaaaaa gcagtatgca gtctgccgaa atccggaaaa tccttccgta
     5941 acgcggtaat gcgattgaca aaatcgaatc ctgtctttaa aatttacaac tttctatatc
     6001 tatttggatt tccactatga aaaccttttc agcgaaaccc cacgaggtga agcgcgaatg
     6061 gttcgtcatc gatgcccaag acaaagtctt gggtcgcgtt gcggccgaag tcgccagccg
     6121 tctgcgtggc aaacacaaac ctgaatacac cccccacgtc gataccggcg attacatcat
     6181 tgttatcaat gcggacaaac tgcgtgtaac cggtgccaaa ttcgaagata aaaaatactt
     6241 ccgccattcc ggtttcccag gcggtatcta cgaacgcact ttccgcgaaa tgcaagagca
     6301 attcccgggc cgcgctttgg aacaagctgt aaaaggtatg ctgcccaaag gtcctttggg
     6361 ttacgccatg attaaaaaac tgaaagtgta tgcgggtgcg gaacacgccc atgctgcgca
     6421 acaacccaaa gttttggaac tgaaataagg acgcgacatg aacggtaaat actactacgg
     6481 cacaggccgc cgcaaaagtt cagtggctcg tgtattcctg attaaaggta caggtcaaat
     6541 catcgtaaac ggccgtcccg ttgacgaatt cttcgcacgc gaaaccagcc gaatggttgt
     6601 tcgccaaccc ttggttctga ctgaaaacgc cgaatctttc gacatcaaag tcaatgttgt
     6661 tggcggcggc gaaaccggcc agtccggcgc aatccgccac ggcattaccc gtgccctgat
     6721 cgacttcgat gccgcgttga aacccgcctt gtctcaagcc ggttttgtta cccgcgatgc
     6781 ccgcgaagtc gaacgtaaaa aaccgggtct gcgcaaagca cgccgtgcaa aacaattctc
     6841 caaacgttaa tgttggaaat tcaaaaaacc ctgcttatcg cagggttttt ttatttgtag
     6901 tagacggttt cccattggca atctaaagat tacagattgg gcaaaaatca aaaacagtat
     6961 agtggattaa caaaaatcag gacaaggcga cgaagccgca gacagtacaa atagtatggc
     7021 aaggcgaggc aacgctgtac tggtttttgt taatccacta tacatgaaaa aatagaaaaa
     7081 ctgccgggta tggttgaata aggggtcaga ccggttccag ttcgctcagt ccgggcaaat
     7141 ctgcaaaacc gcgttcgcgt atgatttggc aaaaattgtt cagatagctc ttgtccgtat
     7201 cttcggtacg gatggcggca tacagtttgc tttgcaatcc gtcggcagta atctgccggt
     7261 gaacgacata gcctttttca aggtagggca tgactgtcca atagggaagg gcggcaatgc
     7321 cacgtctgct ggcaaccagt tggataatgg cgatggtcag ctcgctgtgt cggcgcggcg
     7381 ggttgatgtt tttcggaatc aggatttttt tgggcaaatc cagcatctcg tcgggaacgg
     7441 gataagtaat cagggtttcc ccgataaagt cttcggcttc ccagacagtt ttggcggcaa
     7501 gcggatggtc tggtgcgcaa atgccgacca tttcgtaggc aaacagcggt tggaaagaaa
     7561 taccgttttg tttttccgct tcggaaacaa tggcaaggtc ggcacggtgt tgcagcagca
     7621 gtccgatagg gtccgcttgg aatcccgata cgatatccaa ttcgatttgg ggccatatcg
     7681 ggcggaattc gcccattgcg ggcatgagcc agtcgaaaca ggtatggcat tcgacggcaa
     7741 tccgcaattc tcctgcctct ccttctataa tgcgtgccaa atcacgttct gcatcggtaa
     7801 cttgaggcaa caggtcgtga gcgaggcgta acagcctttc tccaaccggg gtaaagcgca
     7861 agggcgtgga ttttcgttcg aacaacggtg cgccgtagtg gttttcaagc atacggattt
     7921 ggtgggaaag tgcagattgg gtaaggaaaa cccgtttggc ggcaagggag acgctgccgg
     7981 tttcttcaag tgccagcagg gtcttgaggt ggcgcagttc gatgatggaa tccatgaggt
     8041 ttcagacggc atattgaacc ggcgcatatt aaaataattc atatgcgggt gcaaatcgga
     8101 aaaatgtgaa ttccagacat tttgcgatta gaatgcccgc ttgtttaaag cgattaggaa
     8161 aaaagatggt attgcgcagg gattttctga cttggtgtaa tgaaacattg cagacagcgt
     8221 tgtttaaaga ttacgcccct aacggtttgc aggttgaagg gagggaatat atcgggaaaa
     8281 tcgttacgtc ggtaacggca agcagggcag cgattgattt tgctgtggag cagaaggcag
     8341 atttgctttt ggtacatcac ggtatgttct ggaaaaacga gttgccgacc gttactggtt
     8401 ggaaaaaaga acggattgcc gcactgttac ggcacgacat caatatggca ggctaccatc
     8461 tgcccctgga tgcacatccc acactgggca acaatgccca actcgccgac agattgggtt
     8521 ttgcgacaga aaaacggttc ggcgaacaaa acctgctcaa ctcgggcagc ctgaaacaag
     8581 ccaagacact cggcgcattg gcggcgcata ttgaaacagt tttgcaacgt aagcctgtcg
     8641 tcatcggcaa acccgaacgc gaaatccgac gggttgcatg gtgcagcggc ggggcgcagg
     8701 ggttttttca gacggcaata gacgaaggtg tcgatctgta tttgacgggg gaaatttccg
     8761 aagcccaata ccaccttgcc aatgaaacgg gtacggcttt catttcggca gggcatcacg
     8821 cgacggaacg ttacggcgta cgcgcgctgg cagaatcggc ggcagaggtt ttcgggttgg
     8881 aagtgtgcca ttttgacgaa aacaatccgg cttgagtctt gagaaatatc ataaaacttt
     8941 accttatttt aaataatgct ttgagtatca ctgcaaactg ggtaaaattg caacgtttaa
     9001 tggctcggta ttcccaaaat attaggacga ctgaataatg gataatcaag aaatcaacaa
     9061 cggccgccgc cgtttcctga cactcgcgac ctgcggcgcg ggcggagtgg cagcattggg
     9121 tgtggcaacg ccgtttgtgg ccagtttttt cccttcggaa aaagccaagg ccgccggtgc
     9181 tgccgtcgag gtggatgtca gtaaaatcga agcgggtcag ctgctgaccg ccgagtggca
     9241 aggcaaaccg atttgggtgc tcaaccgtac agatcagcag cttaaagacc tgaaaggcct
     9301 gaacggcgaa cttaccgatc ccaattccga tgcggaacag cagccggagt atgctaaaaa
     9361 cgagacccgt tcgattaagc cgaacatcct tgtcgccatc ggtatctgca cccatttggg
     9421 ctgctcgccc accttccgtc ccgacattgc ccccgccgat ttgggtgcag actggaaagg
     9481 cggcttcttc tgcccctgcc acggttcgaa attcgacttg gccggccgcg tatataaagg
     9541 tgttcctgcc ccgaccaacc tggttgtccc gccatataaa tacttgagcg acacaactat
     9601 cttggtgggc gaagactaag aataaggaac gataattatg gcaaaccaaa ccaatagcaa
     9661 agcaaaagca ttgttaggct ggatggacgc tcgtttcccc ctgtctaaaa tgtggaatga
     9721 gcatttggct caatactacg caccgaaaaa ctttaatttt tggtactact tcggctcttt
     9781 ggccctgctt gtcctcgtga ttcaaatcgt cagcggcatt ttcctgacca tgaactacaa
     9841 acccgacggc aacctgaacg cctaccatct gcctgctgcc tttactgcag tcgagtacat
     9901 catgcgcgac gtgtccggcg gttggattat ccgctacatg cattccaccg gcgcatcttt
     9961 cttcttcatt gttgtttatc tgcacatgtt ccgtggtttg atttacggtt cgtacaaaaa
    10021 accccgtgag ttggtgtgga ttttcggttc tctgattttc ttggcattga tggcggaagc
    10081 ctttatgggc tacctgctgc cttggggtca gatgtccttt tggggggcgc aggtaattat
    10141 taacctgttc tccgccatcc ctgttatcgg tccggatttg tccacttgga ttcgcggcga
    10201 cttcaacgtt tccgacgtta ccctgaaccg tttctttgcc ctgcacgtta tcgcggtacc
    10261 tctggtattg ctcggcttgg ttgtggcgca catcatcgcc ctgcacgaag tgggttctaa
    10321 caaccctgac ggcgttgaaa tcaagaaaaa caaagacgaa aacggtatcc cgcgcgacgg
    10381 tatcccattc catccttact ataccgttaa agacatcttg ggtgtggttg tattcctgat
    10441 tgtcttctgt gccgtattgt tcttcgcacc ggaaggcggc ggctacttcc tcgaagcgcc
    10501 gaacttcgat gcggcaaatg cgctgaaaac acccccgcac attgcgccgg tatggtattt
    10561 cacaccgttc tacgccattt tgcgtgcgat tccctcgttc ttgggaacgc aggtttgggg
    10621 tgtaatcggt atgggcgcgg cggtcgtgtt gattgccctg ctgccttggc tggatagggg
    10681 cgaggtgaaa tccgtccgtt accgcggtcc gattttcaaa accgcattgg tcttgttcat
    10741 catttccttt atcggtttgg gtattttggg cgcgatggtg gcaaccgata cgcgtacttt
    10801 ggtcgcgcgc atcctgtcct tcgtctattt cgcattcttc ctgggtatgc cgttctatac
    10861 caagctggat aaaaacaaac cggttcccga acgcgtaacc atgagcaccg ccaaacaaaa
    10921 aatcatgttc tttgtttacg tcggcattac cgccgtgggt gcttacctgt ttgcaaccaa
    10981 catctgatga gggcagtcaa aatgaaacaa gctatgaaaa attggtttgc tgccttgctg
    11041 ttggcagtac ccatgggtgc ggcatttgct tcgggcggtc atgcacacta tgagaaagtc
    11101 gatatcgatt tgcgcgacca agtcagcctg cagcgcggcg cacaaatctt taccaactat
    11161 tgcctgtcct gccactcggc aagcggtatg cgtttcaacc gtttgaaaga catcggtttg
    11221 actgacgaag aaatcaagaa aaacctgatg tttaccaccg ataatgtcgg cgatgtcatg
    11281 cattcggcga tgaacccgaa agatgcggca aaatggtttg gtgctgctcc gcccgatttg
    11341 acattgattg cgcgttccaa aggtgcagac tacctttacg cttatatgcg cggcttctat
    11401 aaagatccga cccgtccgag cggctggaac aatactgtat tcgataaagt cggtatgccc
    11461 cacccgttgt gggaacagca aggcgttcaa gccgttgagt tggatgccaa aggtcagccg
    11521 gttatggtaa aagacgaaca cggcgagatg aagcctaagc tgtattggga atctaccggt
    11581 ttgcacagcc gccgtctgcc taacggcaaa gtgatccaaa aagagtacga cgcatatgta
    11641 cgcgatttgg tcaattacct tgtgtacatg ggcgaacctg cacaactgca acgcaaacgt
    11701 ataggctatg tcgtgatgat tttcctattt gcggttatgc tgcctttggc gtatttcctg
    11761 aaaaaagaat attggaaaga cgtacactaa gcgtttggaa caaaagggca aatcctttag
    11821 ggtttgccct tttttcattt tgcctgccgt ttgaaaagcc taaatccgta tgccgtctga
    11881 acatagctgc aacatttcag acggcatcat tctaaaaatg tcagacatcg ggaacttaat
    11941 cagggtttgt ggcagattga tattgaatta ggaaaaggtc tgaaaccgca agcagcatgg
    12001 taaggcgatg tcgaacaggt ttaaagccaa tccgctatat tttttggagc tatgtcgaac
    12061 aaacaggtag aatcggaata agcggcggtt ttgtccggtg tgaaaatgtt tgaatattag
    12121 gatgattgat ggaactgatg actgttttgc tgcctttggc ggcgttggtg tcgggcgtgt
    12181 tgtttacatg gttgctgatg aagggcaggt ttcagggcga gtttgccgat ttgaacgcgc
    12241 aactggcgga aaaggcggca agatgtgatt ttgtcgaaca ggcacacgca gaaattgcat
    12301 cggaattggc cgttttggac gggaaatacc gacatttgca ggacgaaaat tatgctttgg
    12361 gcaaccgttt ttccgcagcc gaaaagcaga ttgcccattt gcaggaaaaa gaggcggaat
    12421 cggttcggct gaagcagtcg tatatcgagt tgcaggaaaa ggcacagggt ttggcggttg
    12481 aaaacgaacg tttggcaacg cagctcggac aggaacggaa ggcgtttgcc gaccaatatg
    12541 ccttggaacg ccaaatccgc caaagaatcg aaaccgattt ggaagaaagc cgccaaactg
    12601 tccgcgacgt gcaaaacgac cttgccgatg tcggcaaccg ttttgccgca gccgaaaaac
    12661 agattgccca tttgcaggaa aaagaggcgg aagcggagcg gttgaggcag tcgcataccg
    12721 agttgcagga aaaggcacag ggtttggcgg ttgaaaacga acgtttggca acgcaaatcg
    12781 aacaggaacg ccttgcttct gaagagaagc tgtccttact gggcgaggcg cgcaagagct
    12841 tgagcgatca gtttcaaaat cttgccaaca cgattttgga agaaaaaagc cgccgtttta
    12901 ccgagcagaa ccgcgagcag ctccatcagg ttttgaaccc gctaaacgaa cgcatccacg
    12961 gtttcggcga gttggtcaag caaacctatg ataaagaatc gcgcgagcgg ctgacgttgg
    13021 aaaacgaatt gaaacggctt caaggattga atgcgcagct gcacagcgag gcaaaggccc
    13081 tgaccaacgc gctgaccggc acgcagaaca aggttcaggg taattggggc gagatgattc
    13141 tggaaacggt tttggaaaat tccggcctcc agaaagggcg cgaatatgtg gttcaggcgg
    13201 catccgtccg aaaagaggaa gacggcggca cgcgccgcct ccagcccgac gttttggtca
    13261 acctgcccga caacaagcag attgtgattg actccaaggt ctcgctgaca gcttatgtgc
    13321 gctacacgca ggcggcggat gcggatacgg cggcacgcga actggcggca cacgttgcca
    13381 gcatccgtgc acacatgaaa ggcttgtcgc tgaaggatta caccgatttg gaaggtgtga
    13441 acacattgga tttcgtcttt atgtttatcc ctgtcgaacc ggcctacctg ctggcgttgc
    13501 agcatgacgc gggattgttc caagagtgtt tcgacaaacg gattatgctg gtcggcccca
    13561 gtacgctgct ggcgactttg aggacggtgg cgaatatttg gcgcaacgaa cagcaaaatc
    13621 agaacgcact ggcgattgcg gacgaaggcg gcaagctgta cgacaagttt gtcggcttcg
    13681 tacagacgct cgaaagcgtc ggcaaaggca tcgatcaggc gcaaagcagt tttcagacgg
    13741 cattcaagca acttgccgaa gggcgcggga atctggtcgg acgcgccgag aaactgcgtc
    13801 tgttgggcgt gaaggcaggc aaacaacttc aacgggattt ggtcgagcgt tccaatgaaa
    13861 caacggcgtt gtcggaatct ttggaatacg cggcagaaga tgaagcagtc tgacttgtgc
    13921 ggaaaaatat tgtttcagcc ggggcgggaa tgccgaaagc gcggcgtaac tgtactggtt
    13981 ctgattttgg gtttgtttga agtacttacc aaagccttgt ctggcgaggt acaccggcaa
    14041 ggcggcggtt gtctgagcct tttgtgtttc agacggcatc agtgcagatg atgccgtctg
    14101 aagaccgtag ggaaagcggt tagaaaaacg gattgtgccg cttttcgtgt ccgatggaag
    14161 tcatacgccc gtgtccggcg acaacttgca cggtttcggg aagggtgaat aatttgttgc
    14221 ggatattatt gattaagtcg gcgtggttgc cgcgcggaaa atcggttctg cctatggttt
    14281 cgtaaaacag cacgtcgccc gcaatcagca attccgcctc ggcacaataa aagacgatat
    14341 gtcccggcgt atggcccgga atatgcagca cttgaaaggc atagcgtccg accgtgagcg
    14401 tttcgccttc ttcgagccaa cggttcggcg caaaggcggg cgagacggga aatccgtatt
    14461 gcgcggtggt ttgcggcagc gattggagca ggaattcatc gtccggatgc ggcccgagga
    14521 cagggacttt atgcgttttc aacatttcga ccacgccgcc cgcgtgatcg agatggccgt
    14581 gcgtcagcca gattgccgtg agcgtaagtt tgcggtttgc caacgcttgc agcaggaacg
    14641 gcacgtcgcc gccgacatcg gtcaggacgg cttcgccgct ttcgtcgtcc caaatcaggg
    14701 tgcagttttg gcggaagggg gtaacgggga agatttcgta acgtagggtc atcggcgtgt
    14761 tcctaaacgg tttttcagac ggcatcgggt ttgccgtttg ttttatggcg gtttgccgcc
    14821 cgttttgata ttgggggaat cagatgatta agaagacaat cggcggcatc ataccgattt
    14881 ttacggcggt tttcatccct gcatcagcag gcgcggcgga tttgatgctg gcgcaggaat
    14941 acaaagggca ggacattgca ggctgggcga tgagcgagaa actcgacggc gtgcgcgcgt
    15001 attgggacgg taaacattta gtcagccggc aaggatatgt atttacaccg cccaaaggct
    15061 ttaccgcgca gtttccgcct tatcctttgg acggcgaatt gtatagcgga cgcggtcagt
    15121 tcgagcagat ttccgctacc gtgcgttctg cttcttcaga ctggcgcggt atccgcctgc
    15181 acgttttcga tgtacccaag gcgcagggca atctctacca acgtttggca gtcgcaacgc
    15241 agtggctgaa aacgcatccg aacgcgccga ttaccatcat cccacaaatc aaagtgcgcg
    15301 accggcagca cgcgatggac tttttaaaac aaatcgaagc gcagggcggc gaaggcgtga
    15361 tgctgcgtca gcccgaatcc cgttacagcg gcggcaggag cagccaatta ttgaagctga
    15421 aaagccaata cgacgacgaa tgcacggtaa cgcggcacta tgagggcaaa gggcgaaacg
    15481 ccggacggtt gggcgcggtc ggctgcaaaa accggtacgg cgaattccgc attggcagcg
    15541 gcttcaaaga taaagaccga gacaacccgc ccaaaatcgg cacactgatt acctaccgct
    15601 accgtggctt tacgcagaaa ggcacgccga aattcgccac gtttgtgcgc gtgcgtaccg
    15661 accgctgagc aggacagttc agacggcatc cgatactttg gtttataatt ttccttttac
    15721 cgaccgattc cgacatatga ccgatttaga aaccaaacgc cttgaaacac aggcgatgct
    15781 tgaaaacgcc gatcttttgt tcgaccaagg ccaatgccgt gccgcactgc aaaaagtggc
    15841 ggacgagatt acgcgcgatt tgggcggcaa atatccgctg ctgctgcccg tgatgggcgg
    15901 cgcggtggtg tttacggggc agttgctgcc gctgttgcgt tttcccttag attttgatta
    15961 tgttcacgtt tcccgttacg gcgacaagct ggagggcggc gcgttcaact ggaagcgtat
    16021 gcccgatgcg gaacaaatcc ggggcaggca cgtcgtcgtg ctggacgata ttttggacga
    16081 agggcatacg atgtccgcca ttcaagccaa acttttggaa atgggtgcgg caagctgccg
    16141 tgcggcggtg ttcgccaaca agctgatcga caaacccaag cctatccgag ccgattatgt
    16201 cggactggat gtgccgaacc gttatgtttt cggttacggc atggatgcgg cgggctgctg
    16261 gcgcaatctg ggcgagattt acgcattgga cggaaaataa ggacgcgatg ccgtctgaat
    16321 gcctttcaga cggcattgcg cccatacgcc ggcaggacaa cgaggaacag gacgcataat
    16381 atgatagggc ttttaatcat cacacacgaa accataggcg aagcctaccg caagctggca
    16441 catcattttt tcccgggcgg gctgcctgaa aacgtccgca tactcggcgt gcaaccgacg
    16501 gaagaccaag acgacatcat caacaacgcc attgccgcgc ttcaggaatt tcccgacaac
    16561 gacggcgtgc tgattatgac cgacatcttc ggcgcgaccc cctgcaatgc cgcccgccgc
    16621 ctcgtgcgcg aaaacaaatc ggcgattttg accgggctga acgcgccgat gatggttaag
    16681 gccgtccaat attcgccggc ggcggaagac cttgccgcct ttaccgaatg tgtcagagag
    16741 gcggctgtaa aaggcatttt cgccatcacg tccgcgcccg aagatttggt gtgccggcgc
    16801 agcggcgatg ccgtctgaag aagcggcagg gcaggaaaac attttaaacg gcgtctgctg
    16861 ccgatataca taacacggga accgaaatgc tcaaacaatc catcgaaatc atcaacaaac
    16921 tcggactcca cgcccgcgcg tccaacaagt tcacccaaac cgcgtcccaa ttcaaaagcg
    16981 aagtctgggt tacgaaaaac gacagccgcg tcaacggcaa aagcattatg gggctgatga
    17041 tgctcgccgc cgccaagggt acggtcatcg agctggaaac cgacggcgcg gacgaggcgg
    17101 aagcgatgcg cgccctgacc gacttaatca acggctactt cggcgagggc gaataatgag
    17161 tatcgtgctg cacggcgtgg cggcgggcaa aggcattgcc gtcggttgcg cccacctgat
    17221 tgcgcgcggt acggaggaag tgccgcagta tgatgttgcg gaggcggaca ccgatgccga
    17281 agccgaacgt ttcgatgccg ccgtcaaagc cacgcgcaaa gagttggaac agctccgcag
    17341 cgcgattccc gaaaacgccc cgaccgagtt gggcgcgttc atctcgctgc acctgatgct
    17401 cttgaccgat gttaccttgt cgcgcgaacc cgtcgatatt ttaagggaac aaaaaatcaa
    17461 cgccgagtgg gcattgaagc agcagagcga caaactcgcc gcccaattcg acaatatgga
    17521 cgatgcctat ttgcgcgaac gcaagcagga tatgctgcaa gtcgtccgcc gcatccacaa
    17581 caacctgatc gggcagggca acgagttgga agttgccgac aacctgtttg acgaaaccgt
    17641 tctgattgca aacgaccttt cgcccgccga cacggttttg tttaaagagc agcgcattgc
    17701 cgccttcgtt accgatgccg gcggccccac cgggcatacg gcgattttgg gcaggagctt
    17761 ggacatcccg tccgtcgtcg ggctgcacaa cgcgcgcaaa ctgattaccg aaggcgaaac
    17821 ggtcattgtg gacggtatca acggcgtgtt gattatcgcg ccggatgagt cggtgttgaa
    17881 cgaataccgc cgccgtgccc gcgaataccg cagccacaaa cgcgatttga acaagctcaa
    17941 aaaaaccgcc gccgccaccg ccgacggggt ctgcatcgag cttgtgggca atatagaatc
    18001 cgccgaagac gtgaaaccgc tgcacaacct cggcgcagac ggcatcgggc tgttccgcag
    18061 cgagtttctt tacctcaacc gcgatacgat gccgtctgaa gacgagcagt acgaagtgta
    18121 caacgcgatt gtcaaaaaaa tgaagggcaa aagcgtaacg atacggacag tcgatttggg
    18181 agtggacaaa aacccgcgct ggttcgggaa aaacagcacg cccaacggca gcctcaaccc
    18241 cgcgctgggc atgaccggca tccgcctgtg ccttgccgaa ccggtcatgt tccgcaccca
    18301 gatgcgcgcc atcctccgtg cggcggtaca cggtcccgtc cgcatgatgt ggccgatgat
    18361 tacctccgta tccgaagtgc gccagtgcct catccacctc gacaccgcgc aacgccagct
    18421 tgccgaacgc ggcgatgcct tcggtaaagt cggcatcggc tgtatgattg aaattccgtc
    18481 tgccgcgctg accgtcggca gtattttgaa actggtcgat ttcatctccg tcggcaccaa
    18541 cgacctgatt caatacatct tgtccgtcga tcgcggcgac gacagcgtca gccatcttta
    18601 ccagcccgga catcccgccg tgctgaaaat gctgcaacac gtcatccgca ccgccaaccg
    18661 catggacaaa gacgtgtccg tatgcggcga gatggcgggc gatacggcgt ttacccgcat
    18721 cctgcttggt atggggctgc gccgtttttc catgaatccg aacaacatcc tgcccgtcaa
    18781 aaacatcatc ctgcacagca atatcgcaca gctcgaaaac gagattgcca aaatcgtccg
    18841 ctgcgaggac gaggaaaagg cggaaaagct gatcaaacag atgaacagcg tgtctgtcga
    18901 ggaagaagcc gacttcaagg ggcggaaata aatacggcag gtaaaaaata gaaatactta
    18961 acaatgcccg caatctgaaa ttttgccatt cctgcaaaat agaaaaccga aacagaaacc
    19021 caaaatcggc cattccctca aaaacagaaa accaaaatca gaaacctaaa atccgtcatt
    19081 cccgcgcagg cgggaatcta ggtctgtcgg cacggaaact tgtcgggtaa aacggtttct
    19141 ttagatttta cgttctagat tcccgctttt gcgggaatga cgatgaaaag attgttgtcg
    19201 cttcggataa atttttgtcg cgttgggttc tagattcccg ctttcgcggg aatgacggca
    19261 gagtggtttc agttgctctc gataaatgcc gccatctcaa gtctcgtcat tcccttaaaa
    19321 cagaaaaccg aaatcagaaa cctaaaatcc cgtcattccc gcgcaggcgg gaatctaggt
    19381 ctgtcggcac ggaaacttat cgggaaaaac ggtttcttta gattttatgt tctagattcc
    19441 cgcttttgcg ggaatgacga tgaaaagatt gttgtcgctt cggataaatt tttgccgtgt
    19501 tgggttctag attcccgctt ttgcgggaat gacggcaggg tggtttctgt tgtttcggat
    19561 aaattttgca gccctgataa aaaatatggc tgctttggta aaaaaatgcc gtctgaaagg
    19621 ttttcagacg gcattttgtt tttaagaagc atcaacggaa gcggacgatt tccctgtctt
    19681 cgatatggat gcgtaccgta tcgtttcccg atatttcacc ggcgtgcggc atatcgaggt
    19741 tcagccacag gatgccgtgt tccggatgga ggacggacag gctgaacgat tcgggcaaac
    19801 aggtacggga taatacgcgg cactccatgc cgtcttggtc gaaacgcacc gcatgttgcg
    19861 gaatatggcg gtcatcgtcg gtattgggca aacccatcag tcgggcgacc tgcacgccgg
    19921 caggcgtttg aaccaaggtt tcgggcgtac cgcattgaag gattttcccc tcgtgcatga
    19981 cggcgatttc gtccgccgcc gtgcaggcct cttcgggcga atgcgtcacc aaaacggcag
    20041 ggatgccgcc cttgcggata cgttcggcag tcatgcggcg cagccggtcg cgcaaatgcg
    20101 tgtccaaact ggaaaacgat tcgtccaaca gcagcaggga agggcggaca accaaagcgc
    20161 gcgccaacgc caaccgttgc ttctcgcctc cggaaagttt ttcaggcttg cggtgcgcct
    20221 cgttttccag tccgacttcg gcaagtgccg ccatggcaag gcgttcggct tcggctttcg
    20281 gcattttttg cattttcaaa ccgaatgccg cattttccag cgcactcata tggggaaaca
    20341 gcgcgtaatc ttgaaacatc agagaaatac ggcgtttttc gggcggcata cgggtaatgt
    20401 tttccccgtt cagccatatt tccccaccgt ccggccggac aatccccgca atcatattca
    20461 gcagggtgga ttttccgcat cccgaccgcc ccaaaacggc gagtattttg ccgcgcccga
    20521 cagtcaggca gatgttgtcg gcgacggttt tattgccgaa gcgtttgcag agtccgttca
    20581 gttcaagcat ggcgcatcct ataaacgtat gccgtccagc cactcggaca gcggatgggc
    20641 ggcatcaatc agaccgtaac ggcaaaacgc gtccagcgta accagttgcg cgtcgtgcat
    20701 catgtttccc gacaacatgg tggcaaccaa gctgccgatg tccattttct caaaacacgc
    20761 aacctcaccg tcctgatttt caggtaggaa ggtttcgggc aggacggcat cgaatacata
    20821 caggatttca ttgtgcacac cccagctgac ggggcgcagg ctgtgcagct gcgataccgg
    20881 gcggatgagc ggaaacagcg ttttatccaa accggcttct tcgctgcttt cgcgacacac
    20941 ggtttcagac ggcaattcac cgctggaaac accgccggcg gcagtattgt cgagtttgtc
    21001 gggatcgact gctttgtgcg gactgcgcct gcctatccag aaatgccatc ggccgtccga
    21061 ttcggtcaga ccgttgagat ggacggcgcg gctgagtagt ccgaacgggc ggaaagcggc
    21121 gcgttcaagt gagaacaaga tattgccgcc gccgtcggtc aggtcgaaac actcgttgcg
    21181 ccatccgtga agcagccccg ccttgttcca tgtgcgggtg aggtgctgca agcggccgcc
    21241 catatctgac cagccgtccg cattcagaaa aatgccgtct gaagactccg agcagcctgc
    21301 ctcccagtct tttttgacgc gctccgccca ttccggcgac aggttgccca aaggcaggcc
    21361 gttcagatac agtgttttcc agcaactttc tgcaccgtaa cttgcttttg cccactcgaa
    21421 cagggcatca aggtcgtgtt tgctgacgga ttcggtaaaa cggacggtcg gcatagtcgg
    21481 ctttcttgaa gacaatgcgg aagattgtag ccaaactgcc tgaatttgca accgcaaaca
    21541 gacggcgggc tgccgttccg atattgcggc aggaaggaaa atccggcaaa aaacggaggc
    21601 ggcaggaaac aggcaaaaca aaacccctcg gcattgaacc gaggggtttg atatttggtt
    21661 gcgggagcag gattcgaacc tacgaccttc gggttatgag cccgacgagc taccatgctg
    21721 ctccatcccg cgtcagaaga tgaaactata cggcagattt tttatgttgt caaacattat
    21781 ttccgcgaaa aatcataaaa ttttgccgtc cggcggttta tgcctgattt gaaatatcat
    21841 tttctttaca aaagttcatg ttcgtgattt aattttggtt aacatcgaaa caggggtgct
    21901 gcctgatgtt caggcggctg agaaataccc tttacacccg atcgggataa tacctgcgtg
    21961 gggagttttc acggattctg tctttcagac agcattggtt ttcaaatgcc gtctgaaaac
    22021 gcaaaacgct cctgtttctt tattctaaac gagaaaacag gagcattttt tatgactacg
    22081 ccaaaaaaaa ccgccaaaac ttccggcaac gaagcgcgcg aacttgccga cttgagcgaa
    22141 gacatcggta tccgcttcaa atatccgaac tcggaacgcg tgtatctgca aggcagccgc
    22201 gacgacatcc gcgtgccttt gcgtgaaatc cgtcaggacg acacctatac ggcgcaaggc
    22261 gcggaagcca acccgccgat tcccgtctat gacaccagcg gcgtgtacgg cgatccagcg
    22321 gcacacatcg acctgaaaca aggcctgccg cacatccgca ccgcatggct gaacgaacgc
    22381 ggcgataccg aaatcctgcc caagctctcc agcgaatacg gcatcgaacg cgcacacgat
    22441 ccgaaaaccg cccatctgcg cttcaaccaa atcacccgcc cgcgccgcgc gaaaagcggc
    22501 ggcaacgtta cccagcttca ctacgcgcgc cgcggcatca tcacgcccga aatggagttt
    22561 gtcgccatac gcgaacgttt aaaattagac gaattgtccc aaaaatcgga atacgccaaa
    22621 ctcttgaaac agcacgcagg gcaaagtttc ggcgcgaata tcccgaccca tcccgaccaa
    22681 atcacgcctg aattcgtgcg ccgagaaatt gccgccggac gcgcgattat ccccgccaac
    22741 atcaaccacc ccgaactcga accgatgatt atcggccgca acttccgcgt caaaatcaac
    22801 ggcaacttgg gcaattccgc cgtcacttcc agcctgaccg aagaagtcga aaaaatggtg
    22861 tggtcgctgc gttggggcgc ggacacgatt atggatttgt ccaccggcgc gcacatccat
    22921 gaaacgcgcg aatggattat ccgcaacgcg cccgtcccca tcggcaccgt gccgatttac
    22981 caagcgttgg aaaaaaccgg cggcattgcc gaagatttga cttgggattt gttccgcgac
    23041 accttaatcg agcaggcgga acaaggcgtg gactatttca ccatacacgc aggcgtgttg
    23101 ctgcgttatg tgccgatgac tgccgaccgc ctcaccggca tcgtatcgcg cggcggttcg
    23161 attatggcga aatggtgttt ggcacatcat cgggaaaact tcctttacac gcatttcgac
    23221 gaaatctgcg aaattatgaa ggcgtatgac gtatcgttca gcctcggcga cggtttgcgt
    23281 cccggctgca ttgccgatgc caacgacgaa tcccaattcg ccgagctgca caccttgggc
    23341 gaattgacct ccaaagcgtg gaaacacgac gtacaggtga tgatcgaagg tcccggccat
    23401 gtgccgctgc aacgcgtcaa agaaaatatg accgaagagt tgcaacactg ttttgaagca
    23461 ccgttttaca ccctcggccc gctcgttacc gacatcgccc ccggctacga ccacatcacc
    23521 tcgggcatag gcgctgccaa tatcggctgg tacggcacgg cgatgctctg ttacgttacc
    23581 cccaaagaac atttgggact gcccgacaaa gaagacgtgc gtaccggcat catcacctac
    23641 aaactcgccg cccacgccgc cgacctcgcc aaaggctggc cgggcgcaca gttgcgcgac
    23701 aacgccctga gcaaggcgcg tttcgagttc cgctggcgcg accagttccg cctaagcctc
    23761 gaccccgaac gcgccgaaag cttccacgac gaaaccctgc ccgccgaagg cgcgaaaatc
    23821 gcccacttct gttcgatgtg cggccccaaa ttctgctcga tgaaaatcac gcaggaagtg
    23881 cgcgactacg ccgacaagca aaaagcccaa cggcagggca tggaggaaaa agcggtcgag
    23941 ttcgtcaaaa aaggagcgaa gatttacagc taaaacgtca agcaaaaaat gccgtctgaa
    24001 acccggaaaa aaggcttcag acggtattct ttcgcttgtg aaaatatagt ggattaacaa
    24061 aaatcaggac aaggcgacga agccgcagac agtacagata gtagggaacc gattcacttg
    24121 gtgctt
//
LOCUS       DAXIFD010000009        21983 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.009, whole genome shotgun sequence.
ACCESSION   DAXIFD010000009 DAXIFD010000000
VERSION     DAXIFD010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21983
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.009"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..1167)
                     /gene="hemW"
                     /locus_tag="ACFOCN_000293"
     CDS             complement(<1..1167)
                     /gene="hemW"
                     /locus_tag="ACFOCN_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HFC6969506.1"
                     /translation="MHTISFPNRTRLTALPPLSLYIHIPWCIKKCPYCDFNSHSLKNG
                     LPEAAYIDALLTDLQLELPNIWGRPVETIFFGGGTPSLFQAESIDRLLSGVRSLLRLQ
                     PEAEITLEANPGTFEIEKFQGFKDAGITRLSIGVQSFNDDMLSRLGRVHNGKEALTAI
                     DTALKLFDKVNIDLMYALPNQTVQTALDDVQTAIATGATHISAYHLTMEPNTPFGHTP
                     PKGLPQDEAALDIEDAVHGALEGAGFVHYETSAFAKPAMQCRHNLNYWQFGDYLGIGA
                     GAHGKISYPDRIERTVRRRHPNDYLALMQSQPSEAVERKTVAAEDLPFEFMMNALRLT
                     DGVPAAMLQERTGVPSAKIMAQIETARQKGLLETDPAVFRPTEKGRLFLNDLLQC"
     gene            complement(1224..3749)
                     /gene="ligA"
                     /locus_tag="ACFOCN_000294"
     CDS             complement(1224..3749)
                     /gene="ligA"
                     /locus_tag="ACFOCN_000294"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HFC6969507.1"
                     /translation="MNPNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEY
                     YTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVGGEPLAGFAEVRHEVPML
                     SLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGKPEYVIEPKFDGLAISLLYRDGVL
                     VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMLKADFVALNKRQ
                     AENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYF
                     QALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQHELGFI
                     SRAPRWAVAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQ
                     DEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDLFAEA
                     PAANQTQSVPLYKPYRLPTHCPICRSEIEREEGEAVARCSGGMLCQAQRAQGLIHFAS
                     RKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKTVAESDQMPSEG
                     SSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGT
                     LERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPA
                     AQYAEPQRWIARLPGFKISENKAQALWELAGKSIEGLQTDKSLPADWQAWRSEPQNAA
                     LLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK
                     VSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLLG"
     gene            complement(3897..5183)
                     /locus_tag="ACFOCN_000295"
     CDS             complement(3897..5183)
                     /locus_tag="ACFOCN_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA C-terminal
                     FtsZ-binding domain-containing protein"
                     /protein_id="HFC6969508.1"
                     /translation="MIYIVLFLAVVLAVVAYNMYQENQYRKKVRDQFGHSDKDALLNS
                     KTSHVRDGKPSGGSVMMPKPQPAVKKTAKPQDPAMRNLQEQDAVYIAKQKQAKASPFK
                     TEIETALEESGIIGNSAHTVSEPQTGHSAPKPADAPAKPAPVPQTPAKPLITLKELSK
                     VELPWFDVRFDFISYIALTEAKELHALPRLSNRCRYQIVGCTMDDHFQIAEPIPGIRY
                     QAFIVGIQAVSRNGLASQEELSAFNRQVDAFAQSMGGQTLHTDLAAFIEVASALDAFC
                     ARVDQTIAIHLVSPTSISGVELRSAVTGVGFVLEDDGAFHYTDTSGSTMFSICSLNNE
                     PFTNALLDNQSYKGFSMLLDIPHSPAGEKTFDDLFMDLAVRLSGQLNLNLVNDKMEEV
                     STQWLKDVRTYVLARQSEMLKVGIEPGGKTALRLFS"
     gene            complement(5379..5951)
                     /gene="ampD"
                     /locus_tag="ACFOCN_000296"
     CDS             complement(5379..5951)
                     /gene="ampD"
                     /locus_tag="ACFOCN_000296"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HFC6969509.1"
                     /translation="MDNHAEAHWQNGWLQSIRHTPSPNFSPRETGETVSLIVLHNISL
                     PPFEYGTDAVERLFANRLDPNDHPFFGLIHTLRVSSHFLIKRDGKTVQFVSCDNMAYH
                     AGVSSFGGREKCNAFSIGIELEGCDFEPFAEAQYRSLEALLDAICRHYPVTAVTGHQD
                     IAPGRKTDPGHFFDWRRIREKGFLVDRNAV"
     gene            6035..7030
                     /gene="mltG"
                     /locus_tag="ACFOCN_000297"
     CDS             6035..7030
                     /gene="mltG"
                     /locus_tag="ACFOCN_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HFC6969510.1"
                     /translation="MLRKLLKWSAVFLTVSAAVFAALLFVPKDNGRAYRIKIAKNQGI
                     SSVGRKLAEDRIVFSRHVLTAAAYVLGVHNRLHTGTYRLPSEVSAWDILQKMRGGRPD
                     SVTVQIIEGSRFSHMRKVIDATPDIEHDTKGWSNEKLMAEVAPDAFSGNPEGQFFPDS
                     YEIDAGGSDLRIYQTAYKAMQRRLNEAWESRQDGLPYKNPYEMLIMASLVEKETGHEA
                     DRDHVASVFVNRLKIGMRLQTDPSVIYGMGAAYKGKIRKADLRRDTPYNTYTRGGLPP
                     TPIALPGKAALDAAAHPSGEKYLYFVSKMDGTGLSQFSHDLTEHNAAVRKYILKK"
     gene            7090..7710
                     /gene="tmk"
                     /locus_tag="ACFOCN_000298"
     CDS             7090..7710
                     /gene="tmk"
                     /locus_tag="ACFOCN_000298"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HFC6969511.1"
                     /translation="MKPQFITLDGIDGAGKSTNLAVIKAWFERRGLPVLFTREPGGTP
                     VGEALREILLNPETKAGLRAETLMMFAARMQHIEDVILPALSDGIHVVSDRFTDATFA
                     YQGGGRGMPSEDIEILEHWVQGGLRPDLTLLLDVPLEVSMARIGQTREKDRFEQEQAD
                     FFMRVRSVYLNRAAACPERYAVIDSNLGLDEVRNSIEKVLDGHFGC"
     gene            7932..9212
                     /locus_tag="ACFOCN_000299"
     CDS             7932..9212
                     /locus_tag="ACFOCN_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HFC6969512.1"
                     /translation="MENSLKEAALKFHELPVPGKISVTPTKSLATDKDLALAYSPGVA
                     APCMEIHADPQNAYKYTAKGNLVAVISNGTAVLGLGDIGALAGKPVMEGKGVLFKKFA
                     GVDVFDIEIDEKDPQKLVDIIAALEPTFGGINLEDIKAPECFYIERELRKRCKIPVFH
                     DDQHGTAIITAAAVLNALRFTGRKIEEATLVCSGAGAAAIACLNQLLDLGLKRENVTV
                     CDSKGVIYKTREDKDRMDESKQFYAIEDNGQRVLADAVKGKDIFLGLSGANLLTPEML
                     NTMNEKPIVFAMANPNPEILPPLAKETRPDVVIGTGRSDFPNQVNNVLCFPFIFRGAL
                     DVGATTINEEMKRACVYALADLAMEEVTEEVVAAYGKKFEFGAEYLIPTPFDSRLLPR
                     VATAAAKAAMESGVATRPIADLEAYAAKLSEWKL"
     gene            9448..9651
                     /locus_tag="ACFOCN_000300"
     CDS             9448..9651
                     /locus_tag="ACFOCN_000300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969513.1"
                     /translation="MKEMKPVRYHIGDMPETSKQTASRHDDRAVGVDDDCFHDSFGQF
                     LFGCSAEATRTAPISVKRSCLFT"
     gene            9759..10793
                     /gene="lpxK"
                     /locus_tag="ACFOCN_000301"
     CDS             9759..10793
                     /gene="lpxK"
                     /locus_tag="ACFOCN_000301"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_025462052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HFC6969514.1"
                     /translation="MPNCFKFHTVIERHWQKPYPVLSFLLKPLSGLFAKIAAKRRTDF
                     LSGKRQSEKLPVPVVVVGNIHAGGTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKA
                     VHVLNAESRAEDAGDEPLLLFRKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGLQ
                     HYALRRDVEIAVFPSADTGRTDLDLLPNGSLREPLLRLDSVDAVVVSGGKADALFRPS
                     ENMFHSRIEAGRIYRLNNPSEILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKR
                     TVALPDHADISAADLPDADAVIITEKDAVKFSDGICTDNVWVLPVCAIIEPDLAAFVL
                     ERLEDVPKAV"
     gene            10999..11580
                     /locus_tag="ACFOCN_000302"
     CDS             10999..11580
                     /locus_tag="ACFOCN_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HFC6969515.1"
                     /translation="MKLKTLLLPFATLALCTNAFAAPPSDASLARWLDTQNFDRDIEK
                     NMIEGFNAGFKPYADKALAEMPEAKKDQAAKAFNRYRENVLKDLITPEVKQAVRNTLL
                     KNAREIYTQEEIDGMIAFYGSPVGQSVVAKNPRLIKKSMSEIAVSWTALSGKIARHHL
                     PAFTEELRRIICGGKNPDAGCKQAGQVGKRHQK"
     gene            11649..11831
                     /locus_tag="ACFOCN_000303"
     CDS             11649..11831
                     /locus_tag="ACFOCN_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HFC6969516.1"
                     /translation="MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPY
                     MLENEARALSEEELKA"
     gene            11828..12589
                     /gene="kdsB"
                     /locus_tag="ACFOCN_000304"
     CDS             11828..12589
                     /gene="kdsB"
                     /locus_tag="ACFOCN_000304"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFC6969517.1"
                     /translation="MTEFVVLIPARLDSSRLPGKALADIHGKPMVVRVAEQAAKSKAV
                     RVVVATDHPDIQTACQAHGVEVVMTSNRHESGTTRLAEASAALKLPPHLVVVNVQGDE
                     PLIAPELIDRTAEVLVENNVQMATAAHELHDFDELMNPNAVKVVLDKNRNAIYFSRAP
                     IPYPRDAMRAGKREMPFETAVLRHIGIYAYRVGFLQRYTEMSVSSLETIESLEQLRVL
                     WHGYSIAVETAKEAPAAGVDTQEDLDRVRAVFQTV"
     gene            12612..12929
                     /locus_tag="ACFOCN_000305"
                     /pseudo
     CDS             12612..12929
                     /locus_tag="ACFOCN_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
     gene            13031..13231
                     /locus_tag="ACFOCN_000306"
                     /pseudo
     CDS             13031..13231
                     /locus_tag="ACFOCN_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
     gene            13388..13480
                     /locus_tag="ACFOCN_000307"
     tRNA            13388..13480
                     /locus_tag="ACFOCN_000307"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13422..13424,aa:Ser,seq:gct)
     gene            13906..14691
                     /gene="trpA"
                     /locus_tag="ACFOCN_000308"
     CDS             13906..14691
                     /gene="trpA"
                     /locus_tag="ACFOCN_000308"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HFC6969518.1"
                     /translation="MSRIRQAFAALDGGKALIPYITVGDPDIRTTLALMHGMVANGAD
                     ILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLN
                     PVHKMGYREFAQEAAMAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDR
                     IKTIAELAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYIDIPIGVGFGISNAENA
                     RKIGRVADAVIVGSRIVKEIENNAGNEAAAVGALVKELKDAVR"
     gene            14728..15600
                     /gene="accD"
                     /locus_tag="ACFOCN_000309"
     CDS             14728..15600
                     /gene="accD"
                     /locus_tag="ACFOCN_000309"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HFC6969519.1"
                     /translation="MSWLDKILPPKIKNRSKDGSSNVPEGLWHKCPSCSATVYSTELQ
                     QNNQVCPKCNHHNPLSARQRLNLLLDEDGREEVAGNVKPTDPLKFKDGKKYPDRLSAA
                     RKLTGEDDALVVMKGKMNGLPVVVAAFEFRFIGGSMGSVVGERFVQGVRRAVADNCPF
                     VCVAASGGARMQEGVNSLMQMTKTSAALHLLTEKRLPFISVLTDPTMGGVSASFAFLG
                     DVVLAEPNALIGFAGPRVIEQTVRETLPEGFQRAEFLLEKGAIDQIVDRREMKRRISD
                     LITLLCRQDKVSAA"
     gene            complement(15660..16271)
                     /locus_tag="ACFOCN_000310"
     CDS             complement(15660..16271)
                     /locus_tag="ACFOCN_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HFC6969520.1"
                     /translation="MRRTALLLLALTAGTSLAAGFNQKDTPINTRYRETPEEAAAREF
                     KEHTAKLPPLPDTHSDGWFDIYVDENYGKQPKILLDSLQIMPAPDGSIRYILNIRSDK
                     GYDNLTAEGIFCARFSIRFGNGKPSSYKVFGYGDTVNRRWIQPRNAEWKPIGGTLSRN
                     DALRTVLYQAFCEGDVPADTKGLVQRLKERAGRYAPSIKPHNK"
     gene            16380..16604
                     /locus_tag="ACFOCN_000311"
     CDS             16380..16604
                     /locus_tag="ACFOCN_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HFC6969521.1"
                     /translation="MNSETLDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPG
                     DFEAFCRQTGHVLLDASEQDGVFTLVVKHK"
     gene            16605..17210
                     /locus_tag="ACFOCN_000312"
     CDS             16605..17210
                     /locus_tag="ACFOCN_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969522.1"
                     /translation="MPSEMRMSRLMLLLSAFVLAACNAQNRQSGVRHQDFARVAVDLF
                     RSACVLTQGSFESVSKFAAVGHFVPVGKEDLSHLPPTVAEPDVQALWTLERDGGIYYL
                     SLTRDSCSVKAERADSAALLEHFDGLVRQPPKNANIELRAEQSVQASFEIRQVSYAWR
                     EAGSSEETVLTAQTADSPDLPVQAVLNLTHRSHNGKPLILP"
     gene            17270..18304
                     /gene="pyrC"
                     /locus_tag="ACFOCN_000313"
     CDS             17270..18304
                     /gene="pyrC"
                     /locus_tag="ACFOCN_000313"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HFC6969523.1"
                     /translation="MQTLTIIRPDDMHLHLRDGDALKAVAPYTARQMGRAVIMPNLKP
                     PVVSVADALAYKARIMAVLPEGSAFEPLMTLYLTDQATPELVREAKAAGIVAFKLYPA
                     GATTNSDSGVTDLFKLIPVLEEMAKQDILFLVHGEVTDPEIDIFDREAAFIERVMKPV
                     LAQVPNLKVVFEHITTAEAARLVLEAGDNVAASVTPQHLLLNRNDLLVGGVRPHHFCL
                     PVLKRETHRQALVAAVTGEKAHKFFLGTDSAPHAKSAKENACGCAGMFSAMTAVELYA
                     EVFEKAGALDKLEAFASKNGARFYGIPENAGTITLVKQSQTVPVSVPYGDGELVPMRA
                     GGEIGWTVQY"
     gene            complement(18672..19097)
                     /gene="nusB"
                     /locus_tag="ACFOCN_000314"
     CDS             complement(18672..19097)
                     /gene="nusB"
                     /locus_tag="ACFOCN_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HFC6969524.1"
                     /translation="MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADE
                     ELFNKLFFGTQTNAADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVI
                     INEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR"
     gene            complement(19175..19651)
                     /gene="ribH"
                     /locus_tag="ACFOCN_000315"
     CDS             complement(19175..19651)
                     /gene="ribH"
                     /locus_tag="ACFOCN_000315"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HFC6969525.1"
                     /translation="MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVA
                     DENITVATVPGALEIPIALMNLASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSR
                     VALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE"
     gene            complement(19698..20021)
                     /locus_tag="ACFOCN_000316"
     CDS             complement(19698..20021)
                     /locus_tag="ACFOCN_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2185 domain-containing protein"
                     /protein_id="HFC6969526.1"
                     /translation="MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGW
                     RFFSGDETDEYTDDPDNFSIVSLADIAKTNPETAVLLSQPEGSAWELAEDGTFQTVAD
                     WQPQD"
     gene            20188..20907
                     /gene="rnc"
                     /locus_tag="ACFOCN_000317"
     CDS             20188..20907
                     /gene="rnc"
                     /locus_tag="ACFOCN_000317"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HFC6969527.1"
                     /translation="MKDDVLKQQAHAAIQKKLGYAFRDISLLRQALTHRSHHAKHNER
                     FEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLG
                     AGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFADRVRRADFQNQAKD
                     GKTALQEALQARRFALPKYRIEEQIGHANDSMFVVSCDLGELGFVCRAKGTSRKAAEQ
                     EAAKEALKWLEEKLPLKKKKK"
     gene            20954..21877
                     /gene="era"
                     /locus_tag="ACFOCN_000318"
     CDS             20954..21877
                     /gene="era"
                     /locus_tag="ACFOCN_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HFC6969528.1"
                     /translation="MDIETFLAGERAAGGYRCGFVAIVGRPNVGKSTLMNHLIGQKIS
                     ITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVV
                     VFVVEAMRFTDADRVVLKQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFA
                     AAEAVSAKHGLRIANLLELLKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLG
                     EELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDME
                     KLFDTKVFLKVWVKVKSGWADDIRFLRELGL"
BASE COUNT         4877 a         5364 c         6489 g         5253 t
ORIGIN      
        1 acactgcagc aaatcgttta aaaacaagcg tcctttttcg gtcgggcgga atacggcagg
       61 gtcggtttcc agcaggcctt tttgccttgc cgtttcgatt tgcgccatga ttttggcact
      121 cggtacgccc gtgcgctcct gcaacatcgc ggcgggtacg ccgtcggtca ggcgcagggc
      181 gttcatcatg aattcgaacg gcaaatcttc ggcagcgacg gttttgcgtt cgacggcttc
      241 actcggttgg ctttgcatta aggcgaggta gtcgttgggg tggcggcggc ggacggtgcg
      301 ctcgatgcgg tcgggatagg aaattttgcc gtgcgcgccc gcgcctatgc ctaaataatc
      361 gccgaactgc cagtagttca aattgtggcg gcactgcatg gctggtttcg caaaagccga
      421 tgtttcgtag tggacaaaac ccgcgccttc cagcgcgccg tgtaccgcgt cttcgatgtc
      481 gagggcggct tcgtcttgcg gcaaaccttt cggcggcgta tgaccgaacg gcgtgttcgg
      541 ttccatcgtc agatgatacg cgctgatgtg ggtcgcgccc gtagcgatag cggtttgtac
      601 gtcgtccaat gccgtctgaa cggtttggtt cggcagggca tacatcaagt cgatattgac
      661 tttatcaaat aatttcaagg cggtatcgat agcggttaag gcttccttac cgttgtggac
      721 gcgccccagc cttgagagca tatcgtcgtt gaaactctgt acgccgatag aaagccgcgt
      781 aatacccgcg tctttaaatc cttgaaactt ctcgatttca aatgtccccg gattggcttc
      841 caaggtaatt tccgcttccg gctgcaagcg caacagcgaa cgcacgccgc ttaacaaacg
      901 gtcaatcgat tccgcctgaa acaggctggg cgtaccgccg ccgaaaaaga tcgtttccac
      961 cggcctgccc caaatattgg gcaattcaag ctgcaaatcg gtcagcagcg cgtcgatata
     1021 ggcggcttcg ggcaatccgt ttttcaggct gtgggaattg aagtcgcaat acgggcattt
     1081 tttgatgcac cacgggatgt ggatgtaaag cgacaggggc ggcagggcgg tgagtcgggt
     1141 gcggtttgga aaggaaatgg tgtgcatggt gtggttcgga aaagtgggca atgccgtctg
     1201 aaggcggttc agacggcatg ggttcagccg agcagggtaa gcagttcggc ttcgctgagg
     1261 acggaaacgc ccaaggcatt ggctttttcc agcttgctgc ccgcggcttc tccggcgacg
     1321 acgtaatcgg tttttttgga cacgctgccg gaaactttgc cgcctgcggc ttcgattagg
     1381 gattgggctt ggtcgcgttt gagggtgggc agtgtgccag ttaacacgaa ggttttgccc
     1441 gctacggctt tattgatgcc gtctgaacct tgcgccgcct cgtcttcaga cggcatttgc
     1501 gcgaagaagg ttttcaggtt ttcgagtagg gcggcgtttt gtggttcgct gcgccatgct
     1561 tgccagtcgg cggggaggga tttgtcggtt tgcagaccct ctatactttt gccggcgagt
     1621 tcccataagg cttgggcttt gttttcgcta attttgaaac cgggcaggcg ggcaatccag
     1681 cgttgcggtt cggcatattg tgcggcaggc aggctgacgg cttgggcttg cggggcaacg
     1741 cctgcggcga gcagctcgtc tatcatcgcc tgctgttcgg cttgggcgaa gaagtgggca
     1801 atggaacgcg ccactaccgt accgatgtcg ggcaggcagg cgaggacggg ttcgggggcg
     1861 cggcggacgc gttccaatgt gccgaatgcc tgtgccagcg ttttggcggt gcgttcgccg
     1921 acgtggcgga tgccgagcgc gaacaggaag cgcgcgagtt cgggcgtttt gccggattct
     1981 atgcctgcga ggatgttttc cgcccacttg gtcggttgtt ttttatgttt gcccgacgca
     2041 ccgaccgaac tgccttcaga cggcatttga tccgattcgg caacggtttt gtccgccgtt
     2101 tccttcattt tttgcagggt cggaatatcg aggcggtaga ggtcggcgaa gtggcggacg
     2161 aggtcttggg cgacaagctg ttcgatttgt ttttcaccca agccgtcgat gtccatggct
     2221 ttgcgcgagg cgaagtggat taagccttgc gcgcgttgtg cctgacaaag cataccgccg
     2281 ctgcatcggg cgacggcttc gccttcttcg cgttcgattt cgctgcggca gatggggcaa
     2341 tgggtcggca ggcggtaggg cttgtagagc ggaacggatt gggtttggtt tgcagccggt
     2401 gcttcggcaa acaaatcgtc ctgccgatgc ccgatgccgt ctgaaacagc aacggcggtt
     2461 tcctgcatcg ggcggcgttc aaaaatcaca cgcacgactt cgggaatcac gtctccggcg
     2521 cggcgcacga cgacggtatc gccgacgcgc acgtcttttc gggaaacttc gtcctgattg
     2581 tgcagggtgg cgttggtaac agttacgcca ccgacgaata cgggctgtaa tcgggcaacc
     2641 ggcgttaccg cgcccgtcct gccgatttgc acgtcaatcg cttcgacaat ggtcagggct
     2701 tcttcggcag ggaatttgtg ggcaaccgcc caacgcggcg cgcgggagat gaagccgagt
     2761 tcgtgctgtt gcgccaagct gttgacttta accaccatgc cgtcgatttc gtagggcagt
     2821 tcggggcgtt tttgctgcat gtgttcgtaa aacgccaata cttcgtcgat atttttgaaa
     2881 cagccgaaat tgccattggg cagactgaag ccgagtgctt ggaaataggc gagttcctgg
     2941 atgtgttctt ccgcgacgaa accatcttgc tggcgggcga cggagtaggg gaaaaagtgc
     3001 agtttgcgtt gcgcggtgat gcgcgaatcg agttggcgta ggctgccggc ggcggcgttg
     3061 cgcggattgg caaagggttt ttgcccgttt tcggcttgtc ttttattgag ggcgacaaaa
     3121 tcggctttga gcatcagcac ttcgccgcgt acctcgatga gttcgggcgt attttcgccg
     3181 tgcagccgca aggggatgtt ggatacggtt ttgatgtttt gggtaacgtc ttcgcccgtc
     3241 gtgccgtcgc cgcgcgttgc cgcctgcacc aatacgccgt cgcggtagag caggctgatg
     3301 gcgaggccgt cgaatttggg ttcgataacg tattcgggtt tgccgccgtc caaaccgtcg
     3361 cgcacgcgtt ggtcgaaagc gtacatttcg gcatggtcga acacgccgtt ttcatcttgc
     3421 ggggaaaaag cgttggtcag cgacagcatc ggcacttcgt ggcgcacttc ggcaaatccc
     3481 gccaaaggct cgccgccgac gcgctgggtc ggactgtcgg gcagtttgag ctcgggatgg
     3541 tttaattcca acgcttcgag ctcgcggaat aatttgtcgt attcggcatc gggtacgctg
     3601 ggcgcgtcga gggtgtagta ttcgtaggca tagcggttga gcaggtcggt gaggtggcgg
     3661 atgtgttgtg cggcaaattg ttttatatca ctatcagacg gtttaagaag attggtaaag
     3721 ttagtgttat gttttgagtt tggattcatg agagaaggtt ttcagacgac ctttgtctga
     3781 tacgggatga aacgggcaaa ggtcgtctga aaaatgatag gttgaaaaca gctgaatttt
     3841 acccgaaaaa aagcggatat gccgtaacga catatccgct ttgattgcat tcgattttag
     3901 gagaacaggc gcaatgcggt tttgccgccc ggttcgatac cgactttgag catctcggac
     3961 tgacgagcca atacataagt gcgcacgtct ttgagccatt gggtcgaaac ttcttccatt
     4021 ttgtcgttga ccagattcag gttcaactgg ccggacaggc gtaccgccaa atccataaac
     4081 aaatcgtcga aggttttttc gcctgccgga gagtgcggga tgtcgagcag catactgaag
     4141 cctttgtagg actggttgtc caaaagggca ttggtaaacg gctcgttgtt gagcgagcag
     4201 atggagaaca tggtcgagcc cgacgtgtcg gtatagtgga acgcgccgtc gtcttccaaa
     4261 acgaaaccca cgcccgttac ggcggaacgc agttctacgc cgctgatgct ggtcggggaa
     4321 accaaatgga tggcgatggt ctggtcgacg cgcgcgcaga atgcgtccag tgcggaagcc
     4381 acttcgataa aggcggcaag gtcggtgtgc agcgtctgac cgcccatgct ttgtgcgaat
     4441 gcgtccacct ggcggttgaa tgcggagagt tcttcctgcg aggcaagtcc gttgcggctg
     4501 actgcctgaa tacccacgat aaatgcctga tagcggatgc ccgggatggg ttcggcaatc
     4561 tggaaatggt cgtccatggt gcagccgaca atctggtagc ggcagcggtt ggaaaggcgc
     4621 ggcagtgcgt gcagttcttt ggcttcggtc agcgcgatat aggagatgaa gtcgaagcgc
     4681 acgtcaaacc agggtaattc gacttttgac agttctttga gcgtaatcag cggttttgca
     4741 ggtgtttgcg gaacgggtgc aggttttgcc ggcgcgtcgg caggtttcgg tgcggaatgt
     4801 ccggtttggg gttcggaaac ggtgtgggcg gagttgccga taatgccgct ttcttccaag
     4861 gcggtttcga tttcggtttt gaacggggag gcttttgcct gtttctgctt ggcgatgtag
     4921 acggcatcct gttcttgcag gttgcgcatg gcggggtctt ggggttttgc cgtttttttg
     4981 accgccggtt ggggtttcgg catcatgact gacccgccgg acggtttgcc gtcgcggaca
     5041 tggctggttt tgctgttgag cagggcatct ttgtcggagt gtccgaactg gtcgcgcact
     5101 tttttgcggt attggttttc ctgatacatg ttgtaggcga caacggcgag gacgacagct
     5161 agaaacagta cgatgtaaat catggcaatc acttgttaaa tttcgggatg caggatacgc
     5221 aaagtgcggg tactgcggtt aaatcgggct tgcgtttccg gcagtctgac ggaacggccg
     5281 attataacgt ttgaattata acgaaaattg cagggtctga cagcagtgtg tcgaaataag
     5341 cggaaatttt ccgaaatgcc gtctgaaatc tgtggttttc agacggcatt tctgtccacg
     5401 agaaaccctt tctcccgtat ccgccgccag tcgaaaaaat ggccggggtc ggttttgcgg
     5461 ccgggcgcga tgtcttggtg ccccgttacc gccgtgacgg ggtagtggcg gcagattgcg
     5521 tccaacaagg cttcgagcga acggtattgc gcttcggcaa acggttcgaa atcgcagcct
     5581 tccagttcga tgccgattga aaatgcgttg catttttccc tgccgccgaa tgaagatacg
     5641 ccggcatggt atgccatatt gtcgcaggaa acgaactgta ccgttttgcc gtcgcgtttg
     5701 attaagaaat ggctggatac gcgcaaagtg tgtatcaatc cgaaaaacgg gtggtcgttc
     5761 gggtctaggc gattggcaaa aagcctctca accgcatccg taccatattc gaacggcggc
     5821 agcgaaatgt tgtgcaacac aatcagggaa accgtttccc ccgtttccct cgggctgaaa
     5881 ttgggtgacg gggtatggcg tatgctttga agccagccgt tttgccagtg tgcttcggcg
     5941 tgattgtcca tgatgttctt cctgtccggc gggcaatttg ggttatactg tcgcccgaat
     6001 tttaagacgt attccgaatg ctgggaatcc taccatgttg agaaaattgt tgaaatggtc
     6061 tgccgttttt ttgaccgtat cggcagccgt tttcgccgcg ctgcttttcg tccctaaaga
     6121 caacggcagg gcataccgaa ttaaaattgc caaaaaccag ggtatttcgt cggtcggcag
     6181 gaaacttgcc gaagaccgca tcgtgttcag caggcatgtt ttgacggcgg cggcctacgt
     6241 tttgggtgtg cacaacaggc tgcatacggg gacgtacaga ctgccttcgg aagtgtctgc
     6301 ttgggatatc ttgcagaaaa tgcgcggcgg caggccggat tccgttaccg tgcagattat
     6361 cgaaggttcg cgtttttcgc atatgaggaa agtcatcgac gcaacgcccg acatcgaaca
     6421 cgacaccaaa ggctggagca atgaaaaact gatggcggaa gttgcccctg atgccttcag
     6481 cggcaatcct gaagggcagt ttttccccga cagctacgaa atcgatgcgg gcggcagcga
     6541 tttacggatt taccaaaccg cctacaaggc gatgcaacgc cgcctgaatg aggcatggga
     6601 aagcaggcag gacgggctgc cttataaaaa tccttatgaa atgctgatta tggcgagcct
     6661 ggtcgaaaag gaaacggggc atgaagccga ccgcgaccat gtcgcttccg tcttcgtcaa
     6721 ccgcctgaaa atcggtatgc gcctgcaaac cgacccgtcc gtgatttacg gcatgggtgc
     6781 ggcatacaag ggcaaaatcc gtaaagccga cctgcgccgc gacacgccgt acaacaccta
     6841 cacgcgcggc ggtctgccgc caaccccgat tgcgctgccc ggcaaggccg cgcttgatgc
     6901 cgccgcccat ccgtctggcg aaaaatacct ttattttgtt tctaaaatgg acggtacggg
     6961 cttgagccag ttcagccatg atttgaccga acacaatgcc gccgtccgca aatatatttt
     7021 gaaaaaataa accatgccgt ctgaaaagtt tgtgttttca gacggcatac ccttaccgga
     7081 actgcaagca tgaaaccgca attcatcact ttggacggca tagacggagc cggaaaatcc
     7141 accaaccttg ccgtcatcaa agcatggttt gaacggaggg ggctgcccgt gctgttcacg
     7201 cgcgagccgg gcggaacgcc ggtcggtgag gccttgcgcg aaatcctgct caaccctgaa
     7261 accaaagccg gtttgcgtgc ggaaacactg atgatgttcg ccgccagaat gcagcatatt
     7321 gaagacgtga tattgcctgc actttcagac ggcatccatg tcgtgtccga ccgttttacc
     7381 gatgcaacct tcgcctatca gggcggcggg cgggggatgc cgtctgaaga cattgaaatt
     7441 ttggaacatt gggtgcaggg cggtttgcgc cccgatttga ccctgctgtt ggatgtgccg
     7501 ctggaagtgt cgatggcgcg tatcgggcag acgcgcgaga aagaccgttt cgagcaggaa
     7561 caggcagatt tcttcatgcg tgtgcgcagc gtttatctga accgtgccgc cgcctgtccg
     7621 gaacgttacg ccgttatcga cagtaacctc ggcttggatg aagtcagaaa cagcatagaa
     7681 aaagtgttgg acggacattt cggctgttaa tgcggcaaat attgaaacaa gcgcatccgc
     7741 ccgcgccgaa aatcaaacgg cagtgccgca ggtgaaaatg gcggtatgcg ccaaactttc
     7801 ggtatgatag aattacgctc ggttacaagg caggatgcgt cggcaatatt aacgaaccgc
     7861 ccgtaacatg atgacccgaa agcgtttcgg acagtccgat tcaaatcttt ttctcgcaac
     7921 aggattgaca catggaaaac tcattgaaag aagccgccct caagttccac gaattacccg
     7981 ttccgggcaa aatttccgtt accccgacca aatctttggc gaccgacaaa gatttggcgt
     8041 tggcgtactc tccgggcgta gccgctcctt gtatggaaat ccatgccgat ccgcaaaatg
     8101 cctacaaata caccgccaaa ggcaacttgg tcgccgtcat ttccaacggt acggccgttt
     8161 tgggcttggg cgacatcggc gcgctggcgg gcaaacccgt gatggaaggt aaaggcgtat
     8221 tgttcaaaaa attcgccggt gtggacgtgt tcgacatcga aatcgatgaa aaagacccgc
     8281 aaaaactcgt ggacatcatc gccgctttag agccgacctt cggcggcatc aacctcgaag
     8341 acatcaaagc acccgagtgt ttctacatcg aacgcgaatt acgcaaacgc tgcaaaatcc
     8401 ccgtattcca cgacgaccag cacggcacgg ccatcattac cgccgctgcc gtattgaacg
     8461 ccctgcgttt taccggccgt aaaatcgaag aagcgacctt ggtttgctct ggtgcgggtg
     8521 cggccgcgat tgcctgcttg aaccaattgc tggatttggg cttgaaacgc gaaaacgtga
     8581 ccgtttgcga ctcaaaaggc gtgatttaca aaacccgcga agacaaagat cgcatggatg
     8641 agtctaaaca gttctacgcc attgaagaca acggccagcg cgtattggcc gatgcggtta
     8701 aaggcaaaga catcttcttg ggtctgtccg gcgcgaacct gctgaccccc gaaatgttga
     8761 acacgatgaa cgaaaaaccc atcgtgttcg ctatggccaa cccgaatccg gaaatcctgc
     8821 cgccgctggc gaaagaaacc cgtccggacg tggttatcgg taccggccgc tccgacttcc
     8881 cgaaccaagt gaacaatgta ttgtgcttcc cgttcatctt ccgtggcgcg ttggatgtcg
     8941 gcgcgacgac catcaacgaa gaaatgaaac gcgcctgcgt gtatgctttg gcggatttgg
     9001 cgatggaaga agtaaccgaa gaagtggttg ccgcttacgg taagaaattt gaattcggcg
     9061 cggaatacct gattccgact ccgttcgatt cccgcctgct gccgcgcgtt gctacggctg
     9121 ccgccaaagc agcgatggaa agcggcgtgg caacccgtcc gattgcagat ttggaagctt
     9181 acgctgccaa gctgagcgaa tggaagctgt aagccgtttg cggtttaaaa tgccgtctga
     9241 actgttttca ggcggcattt tgctgtcaga ttgatatagt ggattaacaa aaatcaggac
     9301 aaagcgacga agccgcagac agtacaaata gtacggaacc gattcacttg gtgtttcagc
     9361 accttagaga atcgttctct ttgagctaag gcgagccaac gccgtactgg tttttgttaa
     9421 tccactataa atgaaagata ctggcaaatg aaagagatga aacctgtccg ttatcatatt
     9481 ggcgatatgc ccgagacttc aaaacaaacc gcctcccgtc atgacgacag ggcagtgggt
     9541 gttgacgatg attgttttca tgattccttt ggtcaatttt tgtttgggtg ttcggcagag
     9601 gcaacccgaa ccgcgccaat ttctgtaaag cgcagttgct tatttacctg attggttcgc
     9661 ttatcggttt ggtcttcgcg ttgtttatag gtgggtctgt atcgggtacg catgattaat
     9721 gccccgggct gattttgctt cgaggatttg tatcgaatat gccgaattgt ttcaaatttc
     9781 ataccgttat cgaacggcat tggcaaaaac cttatccggt tttgtctttt ctgcttaagc
     9841 cgctctccgg gctgtttgcc aaaattgcgg caaaacggcg gacggatttt ttatcgggaa
     9901 aacggcaaag cgaaaagctg cccgtgcctg tggtcgtggt cggcaatatt cacgcgggtg
     9961 ggacggggaa aacgccgatt gttgccgcgc tggtgtcggg tttgcaggaa aagggcgtca
    10021 aggtcggcat catcagccgg ggctacgggc gcaagagcaa ggcggttcat gtattgaatg
    10081 ctgagagccg agcggaagat gcgggcgatg agcctttgct gctgttccgc aaaaccggtg
    10141 cgccgacggc ggtgggcagc agccgtgcag aggcaggcag ggcgttgctg gcggcgcatc
    10201 ccgacatcgg actgattgtg gcggacgacg gtttgcagca ttacgccctg cggcgagatg
    10261 tggaaatcgc ggtgtttccg tcggcggata cggggcgcac ggatttggat ttactgccca
    10321 acggcagttt gcgcgaacct ttgttgcggc tggattcggt ggatgcggtc gtcgtcagcg
    10381 gcggcaaggc ggatgcgctg tttaggccgt ctgaaaatat gtttcacagc cgtatcgaag
    10441 cgggacggat ttaccgtttg aacaatccgt ccgaaatact ggacacaggc cgtctgaaaa
    10501 atcaaaccgt cgtcgccgtg gcaggtattg ccaagccggc gcgttttttc gattcgttgc
    10561 ggaatatggg cattaccgtg aagcgaaccg tcgcgctgcc tgaccacgcc gacatttcgg
    10621 cggcagattt gcccgatgcg gacgcggtca ttattacgga gaaagatgcg gtcaaatttt
    10681 cagacggcat ttgcaccgat aatgtttggg tgttgcccgt ttgtgcgata atcgaacctg
    10741 atttggcggc gtttgtgttg gagcggttgg aagatgtacc gaaggccgtc tgaaagcacg
    10801 gtttgggcgg agtgattacg gatttgaata agaacgcctc gcgccgtcat tcccgcgcag
    10861 gcgggaatct aagtctcgaa ttttcaggaa tgcctaggag gcttcagaaa tcccaaatct
    10921 ccggatttcc acttggacag gaatgagaaa atcggtcgta ttttttatct gcattaatca
    10981 ttcgttaaag tattgaatat taaactgaaa accttgttat tgcccttcgc cacgctggca
    11041 ttgtgcacca acgcttttgc cgccccgccc agcgacgcgt cgttggcgcg ttggctggat
    11101 acgcagaatt ttgaccggga tatagaaaaa aatatgattg agggctttaa tgccggattt
    11161 aaaccgtatg cggacaaagc ccttgccgaa atgccggaag cgaaaaaaga tcaggcggca
    11221 aaagccttta accgctatcg tgagaatgtt ttgaaagatt tgattacgcc cgaagtgaaa
    11281 caggctgtcc gcaatacttt attgaagaat gcccgtgaga tatacacgca agaagaaatt
    11341 gacggcatga ttgcctttta cggttcgcct gtcggtcagt ccgtcgttgc caaaaatccg
    11401 cgcttaatca agaaatcgat gagtgaaata gcagtatctt ggactgcatt gtcagggaaa
    11461 atcgcgcgac atcatctgcc cgcgtttacg gaagagttgc ggcgcatcat ctgcggcggt
    11521 aaaaatcccg atgcgggctg taaacaagcc ggacaggttg ggaaaaggca tcagaaataa
    11581 atgatagccg tctgaaatat tgaagagggc atccgattga ttgaaccatc aaacccgaaa
    11641 gcaaccctat ggaaaaaaaa ttcttagaca tcctcgtctg ccccgttacc aaaggcaggc
    11701 tggaatatca tcaggacaaa caggaattgt ggagccgtca ggcgaagctt gcctatccga
    11761 ttaaagacgg cattccctat atgctggaaa acgaagcgcg agcgttgagc gaagaggaac
    11821 tcaaagcatg actgaattcg tcgtattgat tccggcgcgg ctggattcat cgcgcctgcc
    11881 cggaaaagcc ttggcggata tccacggtaa accgatggtc gtgcgcgttg ccgaacaggc
    11941 ggcaaaaagt aaagccgtgc gcgtcgtcgt tgccaccgac catcccgata ttcagacggc
    12001 ctgtcaggcg cacggcgtcg aagtcgtcat gacttcaaac cggcacgaaa gcggcacgac
    12061 gcgccttgcc gaagcctctg ccgcgctgaa gctgccgccg catctggtgg ttgtcaacgt
    12121 acagggcgac gagccgctga ttgcccccga actcatcgac cgcactgccg aagtcttggt
    12181 ggaaaacaac gtacagatgg caactgcggc acacgaattg cacgatttcg acgaattgat
    12241 gaatcccaat gccgtcaaag tcgtcctcga caaaaaccgc aacgccatct acttcagccg
    12301 cgccccgatt ccctatccgc gcgatgcgat gcgtgcagga aaacgcgaaa tgccgtttga
    12361 aaccgccgtc ctgcgccata tcggcatcta cgcctaccgc gtcggcttcc tgcaacgcta
    12421 caccgaaatg agcgtttcgt cgctggaaac cattgaatcg ctggagcaac tgcgcgtcct
    12481 gtggcacggc tactcgattg ccgtcgaaac cgccaaagaa gcccccgccg ccggtgtgga
    12541 tacgcaggaa gatttggaca gggtccgcgc cgtatttcag accgtataaa acaggttcaa
    12601 agggaaaaga tatgcagcaa catattgaaa agtggcagca cttaagccgt gaagaacaga
    12661 aaatccttgc cgaagtatgg ggtctcgtgc aaaacgatga tcaggaggtt cactatgaaa
    12721 tgcttaaatt gaacgcaccc gacgaagcca gcggcgaatt ttggttcaga atggcagaaa
    12781 cactcagcac cctgccgccc aaccgttccc tcgaccttag aatgaacggc ggcaggctgg
    12841 cgaccgccgt atccatcctt tccgtcatga ttgaagacaa tcccgacata ccgcagcttt
    12901 gggcgcaaaa aattaccgcg ctcaattata gtggattaaa tttaaaccag tacggcgttg
    12961 cctcgccttg tcgtactatc tgtactgtct gcggcttcgt cgccttgtcc tgatttttgt
    13021 taatccacta tatttggcac acgggcacaa agcccgtgcc gacggtttgg cacaacagcc
    13081 cgacaaagcg gcagaagcca acgaggagga atacctgacc aaagccctgt cgcaaaacct
    13141 gctgtcaaca ttggatgccg cgcttgcacg ttttcctgaa gacgcgtggt ttcaggaaat
    13201 caaacaggat gcacaaaagc attttgcttg aggatgtggc agtcaggaat atttccattc
    13261 aggaagaaaa gaagtgcctg attgggtata atcagggtaa atcttatttt atttcaaaag
    13321 attaatattt gctttctgtt tttccttgac ggtatcggaa aagttgatta tagttacagc
    13381 ttccttagga gtaatggctg agaggctgaa ggcacttccc tgctaaggaa gcatgtgggg
    13441 tcaacctgca tcgagggttc gaatccctct tactccgcca gataaaaaat agacgctgtg
    13501 ttttacagcg tctatttttt tatgcaattt tatagcgggt tggtgcaaaa ccagtatggt
    13561 attgccctgt cttgattctg aattttgtta tagtggatta acaaaaacca gtacggcgtt
    13621 gcctcgcctt agctcaaaga gaacgattct ctaaggtgct ggagcaccaa gtgaatcggc
    13681 tccgtactat ttgtactgtc tgcggcttcg tcgccttgtc ctgatttttg ttaatccact
    13741 ataatccgag atgcttgccg tttatttccg cctcgttcaa acggcggctc tgatttgcgt
    13801 ggtttctgtt tgccgtattc gcctatccgt accgcaaatg ttatactggg aaaaatttac
    13861 tgattgtgtt ttatggcata tttgccgata ggatggaaga gacaaatgag cagaatccgg
    13921 caggcttttg ccgctttgga tggcggaaag gcattgattc cctatattac ggtgggcgac
    13981 cccgatattc ggacaacttt ggcattgatg cacggcatgg ttgcaaacgg tgcggatatt
    14041 ttggagttgg gcgtgccgtt ttccgatccg atggcggatg gaccggttat tcagcgtgcg
    14101 gcggagcggg cgttggcaaa cgggatttcg ctgcgcgatg tcttggatgt cgtcagaaaa
    14161 ttccgtgaaa ccgacacgca aacgccggtt gttttgatgg gatatttgaa ccctgtacat
    14221 aagatgggtt atcgggagtt tgctcaggaa gccgcaatgg cgggtgtgga cggcgtgttg
    14281 acggtggatt cccctgtcga aaccatcgat ccgctctatc gcgagctgaa ggataacggg
    14341 gtcgactgta ttttcctgat tgcgccgacg acgacggaag accgtattaa aaccattgcc
    14401 gagctggcag gcggatttgt ctattatgtt tcgctcaagg gcgtaacggg cgcggcaagt
    14461 ttggatacgg atgaggtttc gcgtaaaata gagtatttgc atcagtatat cgatattccc
    14521 atcggtgtcg gtttcggcat cagcaatgcg gaaaacgcgc gcaaaatcgg ccgggttgcc
    14581 gacgcggtca ttgtcggcag ccggattgtg aaagagattg aaaacaatgc gggcaacgag
    14641 gctgcggccg tcggtgcttt ggtcaaagag ttgaaggatg ccgtgcgctg attctgtcac
    14701 gcattctaaa tattttagga gttgtccatg agctggttag ataaaatcct gccacccaaa
    14761 atcaaaaacc gcagcaaaga cggttcttcc aatgttcccg agggtttgtg gcacaaatgt
    14821 ccgtcttgtt cggcaaccgt ttattcgacc gagttgcagc agaacaatca ggtttgtccg
    14881 aaatgcaacc accacaatcc gttgtcggca cgacaacgcc tgaatctgct tttggatgag
    14941 gatggcagag aggaggttgc cggaaatgtc aaaccgacag atcctttgaa gtttaaagac
    15001 ggcaaaaaat atccggatcg tttgagtgcg gcacgcaagc tgaccgggga agatgatgct
    15061 ttggtggtaa tgaaaggcaa gatgaacggt ctgcccgttg tggttgctgc gtttgagttc
    15121 cgctttatcg gcggttcgat gggttcggtt gtgggcgaac gattcgtaca gggcgtccgc
    15181 cgggcggttg ccgacaattg tccgttcgtc tgtgtggcgg cttccggcgg tgcgcgtatg
    15241 caggagggtg tgaactcatt gatgcagatg acgaaaacca gtgccgcgct gcatttgctg
    15301 acggaaaaac gcctgccgtt tatatcggtg ttgaccgatc cgactatggg cggcgtatcc
    15361 gccagcttcg catttttggg tgatgtcgta ttggctgaac ccaatgccct aatcggtttt
    15421 gcgggaccgc gcgttattga acagactgta cgggaaacct tgccggaagg cttccagcgt
    15481 gctgagtttt tactggagaa aggcgcaatc gaccagattg ttgaccggcg tgagatgaag
    15541 cggcgcatca gtgatttgat tacgctgttg tgccgtcagg acaaagtttc cgccgcttga
    15601 tggctgatga atcgaatacc gtctgaaacc gatgtttcag acggtatttt tgtgtctggt
    15661 tatttgttgt gcggctttat cgacggggca tagcgtccgg cacgttcttt caggcgttgt
    15721 accaaacctt tcgtgtcggc gggtacatcg ccctcgcaga atgcctgata caggacggtg
    15781 cgcagtgcgt cgttgcggct taatgtaccg cctatcggtt tccattcggc gtttcggggc
    15841 tgtatccagc ggcggttgac cgtgtcgccg tagccgaaca ctttatagga ggaaggtttg
    15901 ccgttgccga acctgatgga gaagcgggcg cagaatatgc cttcggcagt caggttgtcg
    15961 tagcctttgt cggagcggat attgagaatg tagcggatgc tgccgtcggg cgcgggcata
    16021 atttgcaggc tgtcgagcag gattttcggc tgtttgccgt aattttcatc cacataaatg
    16081 tcgaaccagc cgtccgagtg cgtatcgggc agcggcggca gtttggcggt atgttcttta
    16141 aattcgcggg cggcggcttc ttcgggcgtt tcgcggtagc gggtgttgat cggcgtgtct
    16201 ttttggttga agccggcagc aagggacgtg ccggcggtga gtgcgagcag caggagggcg
    16261 gtgcggcgca taagtttctc caaattgaaa acggcgttat tttatgggtt ggcaaagggg
    16321 actgcaagca actggggtat aatctccccc cgattcccat tttttaaacg gtacaaacga
    16381 tgaacagcga aactttagac gtaaccggat tgaaatgtcc cctgccgatt ttgcgggcga
    16441 aaaaggcttt ggcgcaaatg cagcagggcg acgtgttgac cgttctggca accgacggcg
    16501 gcgcaccggg ggattttgag gctttttgcc gccaaaccgg tcatgtgctg ttggatgctt
    16561 ccgaacagga cggcgtgttc acgctggtcg tcaagcacaa ataaatgccg tctgaaatgc
    16621 ggatgtcccg attgatgtta ttgctgtcgg catttgtgct tgctgcgtgt aatgcccaaa
    16681 accggcaatc cggtgtacgg catcaggatt tcgcgcgtgt agccgtcgat ttgtttcgga
    16741 gtgcctgcgt cctgactcaa ggcagttttg aatcggtttc caagtttgcc gctgtcggac
    16801 attttgtccc tgtcggaaag gaagacctgt cccatctgcc gcccactgtt gcagaacccg
    16861 atgtacaggc gttgtggacg cttgaacgcg atggcggcat ttattatttg agcctgacgc
    16921 gcgacagttg cagtgtgaaa gccgagcggg cagacagtgc cgcgctgttg gaacattttg
    16981 acggacttgt ccgacagccg ccgaaaaatg ccaatataga attgagggcg gaacagtcgg
    17041 tgcaggcatc atttgaaatc cgccaagtca gctatgcctg gcgggaagca ggcagctccg
    17101 aagaaaccgt attgaccgca caaaccgccg attccccgga tttacccgta caggcagttt
    17161 tgaacctgac gcaccgttcc cacaacggga aacccctaat tctcccctaa cttcagacgg
    17221 cataaagtcg gcatgccgtc tgaacattca aataaaacaa aggaaaacca tgcaaaccct
    17281 gaccattatc cgccccgacg atatgcacct gcacctgcgc gacggcgacg cgctcaaagc
    17341 cgttgcccct tataccgccc gccaaatggg gcgcgccgtc attatgccca acctcaaacc
    17401 gcccgtcgtc agtgtagccg acgcgcttgc ctacaaagcg cgcattatgg cggtgttgcc
    17461 cgaaggcagc gcgtttgagc cgctgatgac gctttacctg accgaccaag ccacgcccga
    17521 gctggtgcgc gaagccaaag ccgccggcat cgtcgccttc aaactctacc ccgccggcgc
    17581 gacgaccaat tccgattccg gcgtaaccga cctattcaag ctcatccccg tgttggaaga
    17641 aatggcaaaa caggacatcc tgttcctcgt tcacggcgaa gtaaccgacc ccgaaatcga
    17701 cattttcgac cgcgaagccg cctttatcga gcgcgtgatg aaacccgttt tggcgcaagt
    17761 gccgaatctt aaagtcgtgt ttgaacacat taccaccgcc gaagccgccc gcctggtttt
    17821 ggaagcaggc gacaacgttg ccgcctctgt gaccccgcaa cacctcctgc tcaaccgcaa
    17881 cgacctcttg gtcggcggcg tgcgccccca tcatttctgc ctgcccgtcc tcaagcgcga
    17941 aacccaccgt caggcattgg ttgccgccgt taccggcgag aaggcgcaca aattcttcct
    18001 cggcaccgac tccgcgccgc acgccaagtc cgccaaagaa aacgcctgcg gctgcgccgg
    18061 tatgttcagc gcgatgaccg ccgtcgagct ttacgccgaa gtgtttgaaa aagcaggcgc
    18121 gttggacaaa ctcgaagcct ttgcctcgaa aaatggcgca aggttttacg gcattccgga
    18181 aaacgccggc acgatcaccc tcgtcaaaca aagccaaacc gtccccgtaa gtgttcccta
    18241 cggcgacggc gaacttgtcc cgatgcgcgc gggcggcgaa atcggctgga cggtgcagta
    18301 ttgatgggct ggaaacaaaa tgccgtctga agggagggct ttcagacggc atttgtgttg
    18361 ctgactgatt gatacgtcaa cggcgtttga gtttgttacg tttcggttat ttccgataaa
    18421 ttcccacaat tttcaaattt cgccattccc acgaaggcag gaatctggaa attcgatgcg
    18481 actagagttt atcaaaaacg gcagcaactc aaaaaaccgg attcccgcct gcgcgggaat
    18541 gacgagattg aagtttcaga atttatttga aatacccaaa attcaaaaaa ccaaattccc
    18601 acatgcgtgg gaatgacgaa acaaagaaag cagaaataag gacatagaac tttctttaaa
    18661 tttgtgatgc atcaacggcg tttgggctcg tcggggcgga tttgggcggc gagtttgtcg
    18721 aggatgccgt tgacgaattt gtgcccgtcc gtgccgccga aggttttggt aacttcgatg
    18781 gcttcgttga taatgacggg gtagggcgtt tcgggcatgg cggacagctc gtggcaggcg
    18841 gtcagcagga cggcgcgttc gatgggattg aggtcttttt cgtcgcggtc gagcaggggg
    18901 cggatttttt ggatgtagtc cgctgcgttg gtttgcgtac cgaagaaaag tttgttgaac
    18961 aattcttcgt ccgctttggc aaagtcgggc atttcgcgga tgtttttagc aatttcgggc
    19021 gcggcggtgc ggttgataag ggattggtaa acggcttgta cggcaagctc gcgggaacgg
    19081 cggcgggctg ttttcatgat ttttccttga aacggttggg cggcacggta tgccgtctga
    19141 aacggaaagg gcgtattggt gtacgccctg tttgttattc ttcgtcttca aactgttctt
    19201 cgagcagcag gttgacgagg ttggcgcatt cgacggcgac tttggcggca tccgaggctt
    19261 tttcttcaat ccgttcgatt gcctgtgcgt cgttttcggt ggtcaggacg gcattggcaa
    19321 tcgggatgtt gtagtcgagt gcgacgcggc tgacccctgc tccggattcg ttggaaacca
    19381 gctcgaaatg gtaggtttcg ccacggataa cgacgccgat ggcaatcagt gcgtcaaatt
    19441 tttcagaaga ggcaaggttc atcagcgcga tggggatttc aagcgcgccg ggtacggtgg
    19501 cgacggtaat gttttcgtct gccacgccca attcttggag ggtgcggcag cagactttga
    19561 gcatttcgct gccgatttcg ttggtgaaac gtgcctgtac gatgccgatg cggaggtgtt
    19621 tgccgtcaag gttgggggcg atggtgttca ttgggtgtcc tttggtattc ggggtttcgg
    19681 aatgccgtct gaaggtttca gtcttgcggt tgccagtcgg cgacggtttg gaatgtgccg
    19741 tcttctgcca attcccacgc gctgccttca ggttgggaaa gcagtacggc ggtttcaggg
    19801 ttggttttgg cgatgtcggc gaggctgacg atgctgaagt tgtcgggatc gtcggtgtat
    19861 tcgtcggtct cgtcgccgct gaagaaacgc cagccgctgt cgttttcaaa aacgggggct
    19921 tcgcggtaga ggaagccgac gggccggttt tgtttggcga cggtgttggt ggcgatacag
    19981 cggtcgagtg ccgaggaaag tgcttgtgca aatgcgttca ttacgggaat acgttggggg
    20041 aaaacttacg gattttacca cgattcgtgc gttgtcggca gacggcggcg gtttggtggt
    20101 acaatgtgcg ccgtttgcag ccttaaggtg tttctgtatt tttggagtat ggaaacgcat
    20161 tcgggctgtt ttttgcggaa gacggtaatg aaagacgatg ttttgaaaca gcaggcacac
    20221 gcggcgatac agaagaaact gggctacgcg ttccgcgata tttcgctttt gcggcaggct
    20281 ttgacgcaca ggagccatca tgcgaagcac aacgagcggt tcgagtttgt cggtgattcg
    20341 attttgaatt atacggtggc gcggatgctg tttgacgcgt ttccgaagtt gaccgagggc
    20401 gagttgtcgc ggttgcgggc aagtctggtc aatgagggcg tgctggcgga aatggcggcg
    20461 gaaatgaatg tcggcgacgg cctgtacttg ggggcgggcg agttgaagag cggcggcttc
    20521 agacggcctt cgatactggc agacgcgatg gaggcgatgt ttgctgccgt cagcttcgat
    20581 gccgatttca acacggcgga aaaggtggtg cgccatttgt ttgccgatcg cgtccggcgc
    20641 gccgattttc aaaatcaggc aaaagacggc aaaactgctt tgcaggaggc gttgcaggca
    20701 cgccgctttg ctttgccgaa ataccgtatc gaagagcaaa tcggccatgc caacgacagt
    20761 atgtttgtgg tttcctgcga tttgggcgaa ctgggtttcg tgtgccgtgc caaagggacg
    20821 agccgcaagg cggcggaaca ggaggcggcg aaagaggctt tgaaatggct ggaagagaag
    20881 ctgccgctga agaagaaaaa gaaatgaggc ggcgcgtgaa tatgccgtct gaaatgtgga
    20941 tatgaaagcg aatatggata ttgaaacctt ccttgcaggg gaacgcgccg ccggcggata
    21001 ccgttgcggc ttcgtggcga ttgtcggtcg tccgaacgtg ggcaaatcaa cgctgatgaa
    21061 ccatctcatc ggtcagaaaa tcagcatcac cagcaaaaag gcgcagacga cgcgcaaccg
    21121 cgtaacgggg atttataccg acgataccgc gcagttcgtg tttgtcgata cgcccggctt
    21181 tcaaaccgac caccgcaacg cgctcaacga caggctgaat caaaacgtta ccgaggcgct
    21241 tggcggcgtg gatgtggtgg ttttcgtcgt ggaagcgatg cgctttaccg atgccgaccg
    21301 tgtcgtgttg aaacaactgc ccaagcacac gccggtcatt ttagtggtca acaaaatcga
    21361 caaggacaag gcgaaagacc gttacgcgct ggaggcgttt gttgcccaag tgcgcgccga
    21421 atttgaattt gcggcggcgg aggcggtcag tgcgaaacac ggattgcgga ttgccaacct
    21481 gttggagctg ctcaagccgt atctgcccga aagcgtgccg atgtatcccg aagatatggt
    21541 tacggacaaa tcggcgcgtt ttttagcgat ggaaatcgtg cgtgaaaaat tgttccgcta
    21601 tttgggcgag gaattgcctt atgcgatgaa cgtcgaagtg gagcagtttg aagaggaaga
    21661 cggtttgaac cgcatctata tcgccgtttt ggtcgataag gaaagccaaa aggcgatttt
    21721 aatcggcaaa ggcggggagc gtttgaagaa aatttccacc gaagcgcggt tggatatgga
    21781 aaaactgttt gataccaaag tatttttgaa ggtctgggtc aaagtcaaat ccggttgggc
    21841 ggacgacatc cgcttcctgc gcgagctggg tttgtagttt ttcttgctga actttacgca
    21901 aatgccgtcc gaacaggttt cagacggcat tttgtttcaa tcgggaatat ctttgttaaa
    21961 aacgggttga tattatctgt gca
//
LOCUS       DAXIFD010000010        20760 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.010, whole genome shotgun sequence.
ACCESSION   DAXIFD010000010 DAXIFD010000000
VERSION     DAXIFD010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20760
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.010"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            234..2495
                     /gene="nuoG"
                     /locus_tag="ACFOCN_000319"
     CDS             234..2495
                     /gene="nuoG"
                     /locus_tag="ACFOCN_000319"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HFC6969529.1"
                     /translation="MLQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAAN
                     CRMCLVNVEKAPKPLPACATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCD
                     QGGECQLQDLAVGYGKTTSRYTEEKRSVVGKDMGPLVSAEEMSRCIHCTRCVRFTEEI
                     AGLQEIAMVNRGEHSEIMPFIGKTVETELSGNVIDLCPVGALTSKPFRFNARTWELNR
                     RKSVSAHDALGSNLIIQTKDHTVRRVLPLENEAINECWLSDRDRFAYEGLYHESRLKN
                     PKIKQGGEWMDVDWKTALEYVRSAIECIAKDGNQNQVGIWANPMNTVEELYLAKKLAN
                     GLGVKNFATRLRQQDKRLSDDLKGAQWLGQSIESLADNDAVLVVGANLRKEQPLLTAR
                     LRRAAKDRMALSVLAGSKEELFMPLLSQEAAHPDEWAGRLKKLSGNAEHAVTASLKNA
                     EKAAVILGAEVQNHPDYAAIYAAAQELADATGAVLGILPQAANSVGADVLGVNSGESV
                     AEMANAPKQAVLLLNVEPEIDTADGAKAVAALKQAKSVMAFTPFVSETLLDVCDVLLP
                     IAPFTETSGSFINMEGRLQSFHGVVQGFGDSRPLWKVLRVLGNLFDLQGFEYHDTAAI
                     LKDALDAESLPSKLDNRVSSTQKDFQTASSRLVRVGGVGIYHTDAIVRRSAPLQATVH
                     AAVPAARVNPNTLARLSLQDGQIAVAKQNGASVSVAVKADAGLPENVVHLPLHTENAA
                     LGALMDTIELAGA"
     gene            2498..3574
                     /gene="nuoH"
                     /locus_tag="ACFOCN_000320"
     CDS             2498..3574
                     /gene="nuoH"
                     /locus_tag="ACFOCN_000320"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HFC6969530.1"
                     /translation="MQEWFQNLFAATLGLGDLGITVGLVVSVIVKIVIILIPLILTVA
                     YLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPI
                     MSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGA
                     MRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGGSVFSWNWLPLFPIF
                     IVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEYIFMILIAALTSL
                     MFLGGWLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATFPRYRYDQIMRLGWKV
                     LIPIGFAYIVILGVWMISPLNLWK"
     gene            3655..4134
                     /gene="nuoI"
                     /locus_tag="ACFOCN_000321"
     CDS             3655..4134
                     /gene="nuoI"
                     /locus_tag="ACFOCN_000321"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HFC6969531.1"
                     /translation="MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRF
                     RGLHAQRRYPNGEERCIACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFC
                     GFCEEACPTDAIVETHIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR"
     gene            4146..4817
                     /locus_tag="ACFOCN_000322"
     CDS             4146..4817
                     /locus_tag="ACFOCN_000322"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HFC6969532.1"
                     /translation="MTFSAILFYILAAIVLYGALRTVTAKNPVHAALHLVLTFCVSAM
                     LWMLMQAEFLGVTLVVVYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLL
                     AVALILILVNPKTDLAAFGLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMV
                     AAIALVHRKTVNPKRMEPADQVKVRADQGRMRLVKMEAVKPQTESAEESEVSDDLKPK
                     EEGKA"
     gene            4814..5119
                     /gene="nuoK"
                     /locus_tag="ACFOCN_000323"
     CDS             4814..5119
                     /gene="nuoK"
                     /locus_tag="ACFOCN_000323"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HFC6969533.1"
                     /translation="MITLTHYLVLGALLFGISAMGIFMNRKNVLVLLMSIELMLLAVN
                     FNFIAFSQHLGDTAGQIFVFFVLTVAAAESAIGLAIMVLVYRNRQTINVADLDELKG"
     gene            5153..5728
                     /gene="fic"
                     /locus_tag="ACFOCN_000324"
     CDS             5153..5728
                     /gene="fic"
                     /locus_tag="ACFOCN_000324"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6969534.1"
                     /translation="MPSENPIGKTMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQ
                     IHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVE
                     MNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFL
                     LKDNLTDDVDNREIIFKGIEQSYYYEGYEKG"
     gene            5852..6193
                     /locus_tag="ACFOCN_000325"
     CDS             5852..6193
                     /locus_tag="ACFOCN_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969535.1"
                     /translation="MMDKNQLEQEFHKAMLNIYQEALNLPQPYKATRFLQIVNEFGGK
                     EAADKLLSTGEKKTQTGFTELILSGGGVHALKYSMEYLVLQKPWCDLFTEEQLAVARK
                     RLERVGFVSPK"
     gene            6242..8266
                     /gene="nuoL"
                     /locus_tag="ACFOCN_000326"
     CDS             6242..8266
                     /gene="nuoL"
                     /locus_tag="ACFOCN_000326"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HFC6969536.1"
                     /translation="MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVS
                     AVLSAYVLWGFIDGSRAKFDENVYTWLTMGGLDFSVGFLVDTMTAMMMVVVTGVSLMV
                     HIYTIGYMHDEKIGYQRFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGF
                     YFKRPSATFANLKAFLINRVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQTATIQ
                     LFPSVEWSLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGL
                     FMVSRMSPIYEMSSTALSVIMMIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTV
                     ALGASAYSVAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPVTWLTM
                     LIGNLSLIGTPFFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFM
                     VFHGEEKWRSLPEHHDDHHGEEHHGLGKNDNPHESPLVVTLPLILLAIPSVIIGYVAI
                     EPMLYGDFFKDVIFVNTDAHPTMHIMKEEFHGALAMVSHSLHSPVLYLAIAGVLSAWL
                     LYVKLPHLPAKIAQAFRPIYVLFESKYYLDALYFNVFAKGTRALGTFFWKVGDTAIID
                     NGIVNGSAKLVGVIAAQVRKAQTGFIYTYAAAMVFGVLVLLGMTFWGLFR"
     gene            8355..9851
                     /locus_tag="ACFOCN_000327"
     CDS             8355..9851
                     /locus_tag="ACFOCN_000327"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HFC6969537.1"
                     /translation="MFSNYLLSLAIWIPIAAGVLVLSTGKDSRAPLARVLAFMGALAG
                     FLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVL
                     AGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPR
                     RVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFL
                     SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFA
                     PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKG
                     AIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL
                     PATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEM
                     KDINCREFAILAILAVVVLGMGLYPNAFIEVVHQAANDLIAHVAQSKI"
     gene            9861..11306
                     /gene="nuoN"
                     /locus_tag="ACFOCN_000328"
     CDS             9861..11306
                     /gene="nuoN"
                     /locus_tag="ACFOCN_000328"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HFC6969538.1"
                     /translation="MNWSDLNLMPAMPEIVLLALLVLLLLADLWVSDDKRRWTHYGAL
                     ATVAVTAVVQLAVWEQGSTSSFNGMYIADGMSRLAKMVLYALTFALFVYAKPYNQVRG
                     IFKGEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAAL
                     KYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVA
                     FKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKVAAVVFAFRILVTGLGTVHHDWSLMF
                     ALLAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYA
                     LMAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYA
                     KFGVIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDESGRAHPTVGGNNAAKF
                     LLSVNALLLVLWGIMPQTVIDWCAKALENTL"
     gene            11418..11717
                     /locus_tag="ACFOCN_000329"
     CDS             11418..11717
                     /locus_tag="ACFOCN_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2818 family protein"
                     /protein_id="HFC6969539.1"
                     /translation="MTASMYILLLLALIFANAPFLTTRLFGIVPLKRKHFGHHLIELA
                     AGFALTAVLAYILESRAGAVHDQGWEFYATVVCLYLIFAFPCFVWRYFWHTRNRE"
     gene            complement(11826..12722)
                     /locus_tag="ACFOCN_000330"
     CDS             complement(11826..12722)
                     /locus_tag="ACFOCN_000330"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HFC6969540.1"
                     /translation="MNPTNDLKAWQQRAQAQTELLLERFLPSENEIPHTLHEAMRYAA
                     LDGGKRLRPMLVLAASELGEAVHEAVEQAMAAIEMIHVYSLVHDDMPAMDNDSLRRGK
                     PTCHIKYGEANALLTGDALQTQAFDVLSRPTELPAARQLAMLSVLAKAGGSRGMAGGQ
                     AIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGATACPDLSDAELSVLDAYAAKLG
                     LAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMGLEAARSYAHKLVAEAVALL
                     EPFGDKALRLRQLAEFAVARKY"
     gene            complement(12706..13014)
                     /locus_tag="ACFOCN_000331"
     CDS             complement(12706..13014)
                     /locus_tag="ACFOCN_000331"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HFC6969541.1"
                     /translation="MPSEILLFQTASGFQKCYNSVFTETPDTMKKITPKSFEEALSRL
                     ESLTQSMQGEMPLEDALAAYQEGNELVRYCQTKLAQVEQKLQVLDADGPKELNLESDE
                     "
     gene            complement(13041..13964)
                     /gene="rsgA"
                     /locus_tag="ACFOCN_000332"
     CDS             complement(13041..13964)
                     /gene="rsgA"
                     /locus_tag="ACFOCN_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HFC6969542.1"
                     /translation="MPSEHPFSDGISTPNPKETMNDTAQITASYGRRYIVRTPDGTTY
                     EASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYRQDAWKTKLIAANVTQLL
                     IVTAAVPSPSMRLLQRALLAAEAAGIEAVIVLNKADLPETALWREKLKFYETLGYPVI
                     ETRALENADLLRPVLQGHSNILLGQSGMGKSTLTNALLGSQTARTGDISAALDSGKHT
                     TTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFRHLVGQCRFHNCTHRAE
                     PGCAFKAAAETGAASPERLAFLQGITDELPG"
     gene            complement(13969..15825)
                     /locus_tag="ACFOCN_000333"
     CDS             complement(13969..15825)
                     /locus_tag="ACFOCN_000333"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6969543.1"
                     /translation="MLNKIFSWFESRIDPYPEAAPKTPEKGLWRFVWSSMAGVRKWIA
                     ALAALTAGIGIMEALIFQFMGKIVEWLGKYAPAELFAEKGWELAAMAAMMVFSVVWAF
                     AASNVRLQTLQGVFPMRLRWNFHRLMLNQSLGFYQDEFAGRVSAKVMQTALALRDAVM
                     TVADMVVYVSVYFITSGVILASLDSWLLLPFIGWIVGFASVMRLLIPKLGQTAAWQAD
                     ARSLMTGRITDAYSNIATVKLFSHGAREAAYAKQSMEEFMVTVRAQMRLATLLHSCSF
                     IVNTSLTLSTAALGIWLWHNGQVGVGAVATATAMALRVNGLSQYIMWESARLFENIGT
                     VGDGMATLSKPHTILDKPRALPLNVPQGAIKFEHIDFCYEAGKPLLNGFNLTIRPGEK
                     VGLIGRSGAGKSTIVNLLLRFYEPQSGTVSIDGQDISGVTQESLRAQIGLVTQDTSLL
                     HRSVRDNIIYGRPDATDAEMVSAAERAEAAGFIPELSDAKGRRGYDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLDKMMNGKTVIAIAHRLST
                     IAAMDRLVVLDKGRIIEEGTHAELLEKRGLYAKLWAHQSGGFLNEHVEWQHD"
     gene            complement(15851..15988)
                     /locus_tag="ACFOCN_000334"
     CDS             complement(15851..15988)
                     /locus_tag="ACFOCN_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969544.1"
                     /translation="MPSEGGATFALTKPCVSASRCLPDGFSRKMALLSFLSDGIMFDA
                     V"
     gene            complement(15988..16572)
                     /gene="ruvA"
                     /locus_tag="ACFOCN_000335"
     CDS             complement(15988..16572)
                     /gene="ruvA"
                     /locus_tag="ACFOCN_000335"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HFC6969545.1"
                     /translation="MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGES
                     VQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAV
                     AEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHAVTDGLFAAAPAADETEDIVGTLLA
                     LGYSEREAKAAVKGVPKGTDVGEGVRLALKNLLK"
     gene            complement(16654..16980)
                     /locus_tag="ACFOCN_000336"
     CDS             complement(16654..16980)
                     /locus_tag="ACFOCN_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6969546.1"
                     /translation="MNFKRLLLTAAATALMGISAPALAHHDGHGDDDHGHAAHQHSKQ
                     DKIISRAQAEKAALARVGGKITDIDLEHDNGRPHYDVEIVKNGQEYKVVVDARTGRVI
                     SSRRDD"
     gene            complement(17034..17753)
                     /locus_tag="ACFOCN_000337"
     CDS             complement(17034..17753)
                     /locus_tag="ACFOCN_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HFC6969547.1"
                     /translation="MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKV
                     AGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRV
                     TNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPV
                     AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQ
                     ERAAEAEAQARGMVQTVLTAG"
     gene            complement(17750..17872)
                     /locus_tag="ACFOCN_000338"
     CDS             complement(17750..17872)
                     /locus_tag="ACFOCN_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6969548.1"
                     /translation="MPSENLSGHIPNRRPHCTAVRNVSGGHDAHSSSTQERNTF"
     gene            complement(17883..18347)
                     /gene="trmL"
                     /locus_tag="ACFOCN_000339"
     CDS             complement(17883..18347)
                     /gene="trmL"
                     /locus_tag="ACFOCN_000339"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HFC6969549.1"
                     /translation="MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKM
                     KRAGLDYHEFASLTVYENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPE
                     TRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGGV"
     gene            complement(18412..19137)
                     /locus_tag="ACFOCN_000340"
     CDS             complement(18412..19137)
                     /locus_tag="ACFOCN_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFC6969550.1"
                     /translation="MDFLSRWRRIADAPTIRRCVLCHGSSGVSDGICAGCRDDLAAYR
                     TDAANSCPLCFRHIQGGAVCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSM
                     VQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWQIL
                     PRHTVFRHHRPPQSTLKGSERRRNIKNAFEIRTPIPENCNILLIDDVFTTGATLDELA
                     KTLKKSGANRICCWTLARTPMKK"
     gene            19136..19879
                     /gene="bioH"
                     /locus_tag="ACFOCN_000341"
     CDS             19136..19879
                     /gene="bioH"
                     /locus_tag="ACFOCN_000341"
                     /EC_number="3.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HFC6969551.1"
                     /translation="MPDAVKKVYLIHGWGANRHMFDDLMPRLPATWPVSAVDLPGHGD
                     APFAQPFDIEAAADAVAAQIDTPADILGWSLGGLVALYLAARHPDKVRSLCLTASFAR
                     LTAAEDYPEGLAAPALGKMVGAFRSDYAKHIKQFLQLQLLHTPDADGIIGRILPDLAR
                     CGTPSALQEALDAAERADARHLLDKIDVPVLLVFGGKDAITPPRMGEYLHRHLKGSRL
                     VVMEKAAHAPFLSHAEAFAALYRDFVEGV"
     gene            19881..20669
                     /locus_tag="ACFOCN_000342"
     CDS             19881..20669
                     /locus_tag="ACFOCN_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6969552.1"
                     /translation="MNPQDKCWQVHRHLAEYADQRLTLVRNAPKYILLAGADADISRS
                     LLAKRYPQAVFEEYDSRADFLAAAAAARKGGFWQRFTGKGVVQHCQSPIAPLPEACAD
                     MLWSNLGLLAAEQILPVLHNWACALKTDGLLFFTCFGRDTFTELKCRLKENGIESRSV
                     MFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMAWNDENAA
                     RSCVGTIFEREGGLGITLETVYGHAVKKLMLPQGENVVQFFPKR"
BASE COUNT         4293 a         5306 c         6008 g         5153 t
ORIGIN      
        1 cattcccgcg taggcgggaa tccatagtgg aatttacaga acccgatatt tgaaaagcag
       61 ttaccgaaaa cccaagaatg gattcccgcc tacgcgggaa tgacggcaag gtggcagtaa
      121 acgttttaaa cagtattgat tgtcaatgaa actcaaaagg ccgtctgaaa cccatttttc
      181 agacgatctc cataaaaaat tatttatcaa atacccgtaa ctaggaacga accatgttac
      241 aaatcgaaat cgacggcaaa caagtatctg tggagcaggg cgcgacggtg attgaagccg
      301 cgcacaagct cggtacttat attccgcatt tctgttacca caaaaaactt tccatcgccg
      361 ccaactgccg tatgtgtctg gtgaacgtag aaaaagcccc aaaacccctg cctgcctgtg
      421 ccacgccggt tacagacggc atgattgtgc gtacgcattc ggcaaaagcc cgagaggcgc
      481 aggaaggcgt gatggagttc ctgctcatca accatccgct tgattgtccg acctgcgacc
      541 aaggcgggga atgccagttg caggatttgg cggtgggcta cggaaaaacc accagccgct
      601 acaccgaaga aaaacgttcc gtcgtcggca aagacatggg gcctttggtt tccgccgagg
      661 aaatgagccg ctgtatccac tgcacccgct gcgttcgttt cactgaagaa atcgccggtt
      721 tgcaagaaat tgcgatggtg aatcgcggcg aacactccga aatcatgccc tttatcggca
      781 aaacggtgga aaccgagctg tcgggcaacg tcatcgattt gtgtcctgtc ggcgcattga
      841 ccagcaaacc gttccgcttc aacgcgcgta cttgggaatt gaaccgccgc aaatccgttt
      901 ccgcccatga cgctttgggc agcaacctga ttatacaaac caaagaccat accgtccgcc
      961 gcgtgttgcc gctggaaaac gaagcgatta acgaatgttg gctgtctgac cgcgaccgtt
     1021 tcgcctacga aggcctgtat cacgaaagcc gtctgaaaaa cccgaaaatc aaacagggcg
     1081 gcgagtggat ggacgtggat tggaaaaccg cgttggaata tgtccgcagc gcgattgaat
     1141 gtatcgccaa agacggcaac caaaaccaag tcggcatttg ggccaatccg atgaatacgg
     1201 ttgaagagct gtatctggcc aaaaagcttg ccaatggttt gggtgttaaa aactttgcca
     1261 cccgtttgcg ccaacaagac aaacgtcttt cagacgacct taaaggtgca caatggttgg
     1321 gacaaagcat tgaatctttg gctgacaacg atgccgtatt ggtagtcggc gcgaacttgc
     1381 gcaaagaaca gccgctcctg accgcccgcc tgcgccgcgc cgccaaagac cgtatggcct
     1441 tgagcgtatt ggccggcagt aaagaagaat tgtttatgcc gcttctgtct caagaagccg
     1501 cacatcccga cgaatgggca ggccgtctga aaaaactgtc tggcaatgcg gaacacgcag
     1561 ttaccgccag cctgaaaaac gctgaaaaag cagcggtgat tttgggtgcg gaagtgcaaa
     1621 accatcctga ttacgccgcg atttatgccg ccgctcaaga gctggcagat gcgaccggcg
     1681 cagtgctggg tattttgccg caagccgcca acagcgttgg tgcggatgtc ttgggcgtga
     1741 actcgggcga gagcgttgcc gaaatggcaa acgcgccgaa acaggcggtc ttgctactca
     1801 acgtcgaacc ggaaatcgat acggcggacg gtgcgaaagc cgtggccgcg ttgaaacagg
     1861 cgaaaagcgt gatggcgttt acaccgtttg tcagcgaaac gctgctggat gtgtgcgacg
     1921 tgttgttgcc gattgcgccg tttaccgaaa catcgggcag cttcatcaat atggaaggcc
     1981 gtctgcaatc ctttcacggc gtggtacaag gcttcggcga ctcgcgtccg ctgtggaaag
     2041 tgttgcgcgt attgggcaac ctgtttgacc tgcaaggttt tgaataccac gataccgccg
     2101 cgattctgaa agacgcgctg gacgcggaaa gcctgccgtc caaactggac aaccgcgtgt
     2161 cttcgactca aaaagatttt cagacggcat caagccgcct cgtgcgcgtg ggcggagtgg
     2221 gcatctatca caccgatgcc atcgtgcgcc gttccgcacc gttgcaggca accgtccatg
     2281 ccgccgtgcc tgccgcgcgt gtgaatccaa acacattggc acgcttgagc ctgcaagacg
     2341 gacaaattgc tgtcgccaaa caaaacggcg caagcgtatc ggttgctgtc aaagccgatg
     2401 ccggtttgcc tgaaaacgtg gtgcatctgc cgctgcatac cgaaaatgcc gcgctgggtg
     2461 cgttgatgga cactattgaa ctggcgggag cttgatcatg caagaatggt tccaaaacct
     2521 ctttgccgca acgctcggtc tgggcgattt gggtatcacc gtgggcttgg tggtatccgt
     2581 catcgtcaaa atcgtgatta tcctgattcc gctgattctg accgtcgcct acctgactta
     2641 tttcgaacgt aaagtcatcg gcttcatgca gcttcgcgtc ggcccgaacg taaccggccc
     2701 gtggggcctg atccagccgt ttgccgatgt gttcaaactc ttgtttaaag aggtaacccg
     2761 tccgaagctg tcaaacaaag ccctgttcta catcggcccg attatgtcgc ttgctccgtc
     2821 tttcgcggca tgggcagtga ttccgttcaa cgaagaatgg gtgctgacca acatcaatat
     2881 cggtcttttg tacattctga tgattacctc gctgtcggtt tacggcgtaa tcatcgcggg
     2941 ctgggcttcc aactccaaat attcgttctt gggtgcaatg cgtgcttccg cacaaagcat
     3001 ttcctacgag attgccatga gtgccgcgct ggtgtgtgtc gtgatggtgt cgggcagcat
     3061 gaacttctcc gacatcgttg ccgcgcaggc aaaaggtatc gcgggcggtt ccgtattctc
     3121 gtggaactgg ctgccgctgt tcccaatctt catcgtctat ctgatttccg ccgttgccga
     3181 aaccaaccgc gcaccgtttg acgtggcaga gggcgagtcc gaaatcgttg ccggacacca
     3241 cgttgaatat tccggcttcg cattcgcgct gttcttcctt gccgaataca ttttcatgat
     3301 tctgattgcc gcgctgacat cgctgatgtt tctcggcggc tggttgtctc cgttcccgca
     3361 aagctggggc tttatcggta cgccttccgc attctggatg tttgtgaaaa tggcggcagt
     3421 gttgtactgg tacctgtgga tccgtgcaac cttcccgcgc taccgttacg accaaatcat
     3481 gcgtttgggc tggaaagtgc tgattccgat cggcttcgcc tacatcgtga ttttgggcgt
     3541 gtggatgatt tcaccgctga atttgtggaa ataagtttca gacggcatct tgaggccgtc
     3601 tgaacaaagc gattttgaat acctaacgaa atccctgttt tgagggaaca taatatggct
     3661 aacttagtaa aaacctttct gctcggcgag ttggtaaaag gcatgggcgt aacgctcaaa
     3721 aacttttttg cccgcaaaga cacaatttat ttccccgaag agaaaacgcc gcaatccgtg
     3781 cgtttccgtg gcctgcacgc gcagcggcgg tatccgaacg gcgaagagcg ctgtatcgcg
     3841 tgtaaattgt gcgaggcagt ttgtccggca atggcgatta acattgaatc ggaagaacgc
     3901 gaagacggca cccgccgcac caagcgttac gatatcgacc tgaccaagtg catcttctgc
     3961 ggtttctgcg aagaggcctg cccgaccgat gcgattgtgg aaacgcatat ttttgaatac
     4021 cacggcgaga aaaaaggcga cttgcacatg accaagccga tcctcttggc aatcggcgac
     4081 aaatacgaag ctgaaatcgc caaacgcaaa gccgctgatg cgccgtatcg ttaaggagca
     4141 gacgaatgac tttttccgcg attctgttct atatccttgc cgccatcgtc ctatacggcg
     4201 cgctgcgtac cgttacagcg aaaaaccctg tccacgccgc tttgcatctg gtgttgacct
     4261 tctgcgtgag cgcgatgctt tggatgctga tgcaggctga gtttttgggc gtgacgctgg
     4321 tggtggttta cgtcggcgcc gtgatggtgt tgttcctgtt cgtcgtgatg atgttgaaca
     4381 tcgacattga agaaatgcgt gccggtttct ggcggcacgc gcctgttgcc ggtgtggtcg
     4441 gcacattgtt ggcagttgcc ctgattctga ttctggtcaa tccgaaaacc gaccttgccg
     4501 catttgggct gatgaaagac attcccgccg attacaacaa tatccgcgat ttgggcagcc
     4561 gtatttatac cgattatctg ctgccgtttg aattggcggc ggtattgctg ctgttgggta
     4621 tggtggccgc gattgcgctg gttcaccgta aaacggttaa tccgaaacgt atggaacctg
     4681 ccgaccaagt taaagtacgc gccgaccaag gccgtatgcg cttggtgaaa atggaagccg
     4741 tgaaaccgca aaccgaatct gccgaagaaa gcgaagtttc agacgacctc aagccgaaag
     4801 aggagggcaa agcatgatta ccttgacgca ttatctggta ttgggtgcgc tcctgttcgg
     4861 tatcagcgcg atgggtatct tcatgaaccg caaaaacgtg ctggtattgt tgatgtccat
     4921 tgagctgatg cttttggcgg tgaacttcaa ctttatcgcc ttttcgcaac atttgggcga
     4981 tactgccgga caaattttcg tatttttcgt actgaccgtt gctgctgccg aatctgccat
     5041 cggtttggca attatggtgc tggtgtaccg caaccgacaa acgattaacg ttgccgattt
     5101 ggacgagttg aaagggtaaa ggtaggttgg gtcgagacct gacaagacac cgatgccgtc
     5161 tgaaaacccg ataggaaaaa cgatgaaatc catagacgaa caaagcctgc ataatgcccg
     5221 ccgcctgttt gaaagcggcg acatcgaccg tatcgaagtc ggtaccaccg cgggcctgca
     5281 acagattcac cgttacctgt tcggcggctt atatgatttt gcgggtcaaa tcagggaaga
     5341 caacatttcc aaaggcggtt ttcgttttgc caacgccatg tatttaaaag aggctttggt
     5401 taaaatcgag cagatgcccg agcggacttt tgaagaaatc atcgccaaat atgttgaaat
     5461 gaacattgcc catccgtttt tggagggtaa tggcagaagt acccgcatct ggctggattt
     5521 ggtgctgaaa aaaaacctga aaaaagtcgt gaactggcaa aatgtaagta aaaccctgta
     5581 tttgcaggca atggaacgca gccccgtcaa cgatttagaa ctgcgctttc tgttaaagga
     5641 caacctgact gacgatgtgg acaaccgtga aatcatcttt aaaggtatcg agcagtcgta
     5701 ttattacgaa gggtatgaaa aaggctgagg gtcgtctgaa aagcgatttc agactgtttc
     5761 agacgacctg attcggtagg tgatcagacg ggagcggatg agaaaagaaa ttctgggtaa
     5821 gaataatccg gtctgaaata ttggaagaag aatgatggat aaaaatcagt tagaacaaga
     5881 atttcataaa gccatgttaa atatttatca ggaggctttg aatttgccgc aaccttacaa
     5941 ggcgacacga tttttacaaa ttgtaaatga atttggtggt aaagaggcgg cggataaatt
     6001 attaagtacg ggggaaaaga agactcagac cggttttaca gagctgattt tgagtggtgg
     6061 cggagtccac gccttgaaat acagtatgga atatctggtg ttacaaaagc cgtggtgtga
     6121 tttatttact gaagagcaat tagctgtggc acgcaaacga ttggagcgtg ttggatttgt
     6181 ttctccgaag taattttgta cgaaacaaac atagattttt aaatcaatcg gattcaatca
     6241 aatgaacgac atgactttat atctcatcat tgcccttgtg cctttggcag gctcgctgat
     6301 cgcgggtttg ttcggcaaca aaatcggacg tgccggtgcg catacggtta cgatactcgg
     6361 cgtggcggtg tccgccgtgc tgtcggctta tgtgttgtgg ggctttattg acggcagccg
     6421 cgccaagttt gacgaaaacg tctatacctg gctgacaatg ggcggcttgg atttctccgt
     6481 cggctttttg gtcgatacga tgacggcgat gatgatggtc gtggtcaccg gcgtatcgct
     6541 gatggtacat atctatacca tcggttatat gcacgatgaa aaaatcggct accaacgctt
     6601 cttcagctat atttctttgt ttactttcag catgttgatg ctgattatga gcaacaactt
     6661 catccagctc ttcttcggtt gggaagcggt gggcttggtg tcgtatctct tgatcggttt
     6721 ctatttcaaa cgtccgagcg cgacatttgc caacctgaaa gcctttttga tcaaccgtgt
     6781 cggcgacttc ggctttttgc tcggtatcgg cttggtgctt gcctatttcg gcggcagcct
     6841 gcgctatcaa gatgtattcg cttatctgcc taatgttcag acggccacca ttcaattgtt
     6901 ccccagtgtg gaatggtctt tgattactgt aacctgtttg ctcctgtttg tcggtgcgat
     6961 gggtaaatcg gcacaattcc cgctgcacgt ctggctgcct gattcgatgg aaggcccgac
     7021 cccgatttct gcattgattc acgccgcaac catggttacc gccggtctgt ttatggtatc
     7081 gcgtatgtcg ccgatttatg agatgagtag cactgcgctg tctgtcatca tgatgattgg
     7141 tgcgattacc gccctgttta tgggtttctt gggcgtgatt caaaacgata tcaagcgcgt
     7201 ggttgcgtat tccaccctgt cgcaactggg ctatatgacc gtggctttgg gcgcgtccgc
     7261 ctattccgtg gcgatgttcc acgtcatgac ccacgccttc tttaaagcct tgctgttctt
     7321 ggcggcaggt agcgcgatta tcggtatgca ccacgaccaa gatatgcgcc atatgggcaa
     7381 cctgaaaaaa tatatgccgg ttacttggct gactatgctg atcggcaatt tgtcgctgat
     7441 cggtacgccg ttcttctccg gcttctattc taaagattcg attatcgaag cagcgaaata
     7501 cagcaccctg ccgggcagcg gctttgctta ttttgccgtc cttgccagcg tgttcgttac
     7561 cgcgttttac gcgttccgcc aatactttat ggtgttccac ggcgaagaga aatggcgcag
     7621 cctgcctgaa catcatgacg atcatcatgg tgaagaacat cacggcttgg gcaaaaacga
     7681 caatccgcac gaaagcccgc tggttgttac cctgccgctg attttgcttg ccatcccgtc
     7741 cgtcatcatc ggctatgttg ccatcgagcc tatgctttac ggcgatttct ttaaagacgt
     7801 gattttcgtc aataccgacg cgcatccgac catgcacatc atgaaggaag agttccacgg
     7861 cgcattggca atggtgtcgc acagcctgca ttcgcctgta ctctaccttg ctattgcagg
     7921 tgtcttaagc gcatggcttt tgtacgtcaa actgccgcac ctgcctgcga aaattgcaca
     7981 ggcgttccgt ccgatttacg ttttgtttga aagcaaatac tacctcgacg ccctgtattt
     8041 caacgttttc gccaaaggca cacgcgcatt gggtaccttc ttctggaaag tcggcgatac
     8101 cgccattatc gacaacggca tcgtcaacgg ctctgccaaa ctggtcggcg taattgccgc
     8161 gcaagtgcgt aaagcccaaa ccggctttat ctacacctac gccgccgcta tggtattcgg
     8221 cgtattggta ctgctcggca tgaccttctg gggattgttc agataaggat gaggtttcag
     8281 acggtctctt aaaacgtcgt ctgacaaacc aacccgtaca acgatatttt tattttaacc
     8341 acaggttaac cactatgttt tccaactacc tactcagctt ggcaatatgg atacccatcg
     8401 ccgcaggtgt gctggttttg tcgaccggta aggacagccg tgcgccgctg gcgcgtgtgc
     8461 tcgccttcat gggtgcgctt gccggtttct tggtaacgct gcccctgttt accggtttcg
     8521 accgtttgag cggcggctat caatttaccg agttccacga gtggattccg ctgctgaaaa
     8581 tcaactatgc attgggcgtg gacggtattt cagtgctctt tatcatcttg aatgcgttta
     8641 ttacgctgtt ggtggtgctg gcgggttggg aagttattca gaaacgcccg gcgcagtata
     8701 tggcggcatt cctgatgatg tcgggtttga ttaacggtgc gtttgccgcg caggatgcga
     8761 ttctgtttta tgtgttcttc gagggtatgc tgattccgct gtacctgatt atcggtgtat
     8821 ggggtggccc gcgccgcgtt tatgcgtcgg tcaagctgtt cctctatacg ctgatgggtt
     8881 cgcttttgat gctggttgcc atggtttacc tgtactatca gacaggcagc ttctctattg
     8941 tcgatttcca aaacatcaag cagattccat tgggcgtaca acagcttttg tttgtggcat
     9001 tcttcctgtc atttgccgta aaagtgccga tgttccctgt gcacacttgg ttgccggatg
     9061 cccacgttga agcgccgacc ggcggttcga tggtgttggc ggcaattacg ctgaaactgg
     9121 gtgcgtatgg tttcttgcgt tttatcctgc cgattatgcc ggatgcggca cgctattttg
     9181 cccctgtgat catcgtattg agcctgattg ccgtgattta tatcggtatg gtggctttgg
     9241 tgcaaaccga tatgaaaaaa ctggtggcgt attcgtctat cagccatatg ggttttgtaa
     9301 cgcttgggat gtttttgttt gttgacgggc agttggacga ctgggcgttg aaaggcgcaa
     9361 tcattcaaat gatttcgcac ggtttcgtgt cggcggcgat gtttatgtgt atcggcgtga
     9421 tgtacgaccg cctgcatacc cgcaatattg ctgactatgg cggcgtggtc aatgtgatgc
     9481 ctaagtttgc ggcgtttatg atgttgttcg gtatggccaa tgccggtctg cctgcaactt
     9541 ccggcttcgt gggcgagttt atggtgatta tgggcgcggt taaagtgaat ttctgggtgg
     9601 gcgcgttggc ggccatgacc ctgatttacg gtgcgtctta taccctgtgg atgtacaagc
     9661 gcgtgatttt cggcgcgatc cacaatccgc acgttgccga aatgaaagac atcaactgcc
     9721 gcgaatttgc gattctggcg attttggcgg ttgtggtatt gggtatgggt ctgtatccga
     9781 acgcatttat cgaagtggtg catcaggcgg caaacgattt gattgcccat gtggcacaaa
     9841 gcaagatttg aggtgtgtaa atgaactggt ctgatttgaa tttgatgccc gccatgcccg
     9901 aaatcgtgct gcttgcgctg ctggtgttat tgttgctggc ggacttgtgg gtcagtgatg
     9961 acaaacgccg gtggacgcat tacggcgcgt tggcaacggt ggcggttacg gctgtggtgc
    10021 agcttgccgt ttgggaacag ggcagcacgt cttcgttcaa cggcatgtat attgcagacg
    10081 gtatgtcgcg tttggcaaaa atggttttat atgccttgac gtttgccctg tttgtttatg
    10141 ccaagcccta caaccaagtg cgcggtattt tcaaaggcga gttttacacc ctgtcgctgt
    10201 ttgccctctt gggcatgagc gtgatggtga gcgcggggca ttttttaact gcctatatcg
    10261 gtttggaact cttgtcgctc gccctttacg ccctgattgc cctgcgccgc gattccggct
    10321 ttgccgccga agccgccttg aaatattttg ttctgggcgc gctggcatcc ggcctgctgc
    10381 tctacggtat ttctatggtt tacggcgcaa ccggttcgct ggaatttgcc ggcgtgctcg
    10441 cctcttcctt caatgaagaa gcaaacgaat ggctgttgaa actgggtctg gtgtttatcg
    10501 tcgtcgccgt tgcgttcaaa ctcggcgcgg tgccgttcca tatgtgggtg cccgacgtgt
    10561 atcacggcgc gcccacttct gttaccgccc tagtcggcac tgccccgaaa gtcgccgccg
    10621 tcgttttcgc tttccgcatc ctcgttaccg ggttgggaac cgtgcatcat gactggtctc
    10681 tgatgtttgc cctgcttgcc gccgcctcgc tgctggtcgg caaccttgcc gccatcatgc
    10741 agaccaatat caaacgtatg ctcgcctatt ccaccgtatc gcatatgggc tttatcttgt
    10801 tggcgtttat ggcaggcgcg gtcggctttg cggcgggtct ctattacgcc attacctacg
    10861 cgctgatggc ggcggcaggg ttcggcgtgt tgatggtgtt gtcggatggg gacaacgagt
    10921 gcgaaaacat cagcgatttg gcagggctga accaacaccg cgtatggctt gcctttttga
    10981 tgctgctggt tatgttctcc atggcaggca ttccgccgct gatgggtttt tacgccaaat
    11041 tcggcgtgat tatggcactc ttgaaacaag gctatgtttg gttgtccgta tttgccgtcg
    11101 tgatgtcgct gattggtgcg ttctactacc tgcgcgtggt caaagtcatg tattttgacg
    11161 aatccggccg cgcccatccc accgtcggcg gcaacaatgc cgcaaaattc cttttgagcg
    11221 tcaacgcgct gctgttggtg ctgtggggca ttatgccgca aaccgttatc gactggtgcg
    11281 ccaaggcgtt ggaaaacacg ctgtaagccg ccgcaacggc agccgtgtca gaggctgccg
    11341 tttttgttaa gatatgccgt tccgcaatgc agttcagacg gcatcgccgc cgacaatgcc
    11401 caaacagaaa gcccgccatg accgcatcca tgtacatcct tttgctgctt gccttgattt
    11461 ttgccaacgc ccccttcctc acgaccaggc tgttcggcat cgtaccgctc aagcgcaaac
    11521 atttcgggca ccacttgatc gagctggcgg caggtttcgc gctgaccgcc gttcttgcct
    11581 acatcctcga atcccgtgcg ggagcggtac acgatcaggg ttgggagttt tacgccaccg
    11641 tcgtctgcct gtacctgatt tttgcgtttc cctgtttcgt gtggcggtat ttttggcaca
    11701 cgcgcaacag ggaataggca ggcataggaa tgccgtctga aacctgttca gacggcattt
    11761 gtttcattca agtgcaggcc ggcatcgctg tgccggcacg tttcagccgg cgatatacgc
    11821 cggttttaat atttgcgggc gactgcaaat tctgccaact gccgcaggcg cagggctttg
    11881 tcgccgaagg gttcgagcag cgcgaccgct tcggcaacca gtttgtgtgc gtatgagcgc
    11941 gccgcttcca agcccatcag tttcacataa gtcggcttgt cgttgtctgc gtctttgccc
    12001 gccgttttgc ccaaagtcgc cgtgtccgct tcacaatcca acacatcgtc aatgacttgg
    12061 aacgccagcc ccagttttgc cgcgtaagcg tccaatacgg aaagttccgc atctgacaga
    12121 tcaggacacg ccgtcgcccc caataaaacc gccgcacgga ttagcgcacc cgttttcagg
    12181 ctgtgcatct gttccaaatc ggcttgaacc atttgtttgc cgacattcgc caaatcgatt
    12241 gcctgaccgc ccgccatacc cctgctgccg cccgctttcg ccaacaccga caacattgcc
    12301 aactggcgtg cggcgggcag ttctgtcgga cgacttaaca cgtcgaaggc ttgggtttgc
    12361 aaagcatcgc cggtcagcag tgcgtttgct tcgccatatt tgatgtggca ggtcggtttg
    12421 ccccggcgca ggctgtcgtt gtccatcgcc ggcatatcgt cgtgaaccaa agaatagacg
    12481 tggatcattt cgattgccgc cattgcctgt tctactgctt catgcacggc ttcgcctaat
    12541 tccgaagctg ccagaaccag catcggacgc agacgcttgc cgccgtccaa agccgcatag
    12601 cgcatcgctt cgtgcagcgt gtgcgggatt tcgttttcag acggcaaaaa gcgttccagc
    12661 agcagctctg tctgtgcctg cgccctctgt tgccacgctt tcaaatcatt cgtcggattc
    12721 aaggttcaac tccttcggcc cgtccgcatc caaaacctgt aatttctgtt cgacttgtgc
    12781 cagcttggtt tggcagtacc tgaccagctc gttgccttcc tgataggcgg caagcgcgtc
    12841 ttccaagggc atttcaccct gcatagactg cgtcagcgat tcaaggcgcg acaaggcttc
    12901 ttcaaacgat ttcggggtaa tttttttcat ggtgtcggga gtttctgtaa aaacggaatt
    12961 gtagcatttc tgaaaaccgg atgccgtctg aaacagcagg atttcagacg gcattgtttt
    13021 gtcctgcaaa cggcaaggcg ttacccgggc agttcgtcgg tgatgccctg caaaaaggcg
    13081 aggcgttcgg ggcttgccgc cccggtttcg gcggcggctt tgaaggcgca gccgggttcg
    13141 gcgcggtggg tgcagttgtg gaagcggcat tgcccgacaa ggtggcggaa atcggggaaa
    13201 tagcgcggca aatcggcggc ttggaggtgg tgtaaaccaa attcttgcaa acccggggag
    13261 tcgatgagtt gggtttcgcc gttcaaatca taaagccggg cgtgggtggt ggtgtgtttt
    13321 cccgagtcga gtgcggcgga aatgtcgccg gtgcgggcgg tttggctgcc taaaagggcg
    13381 ttggtcaggg tggatttgcc cataccgctc tgcccgagca ggatgttgct gtgcccttgc
    13441 aggacggggc gcaggaggtc ggcgttttcc agcgcacggg tttcgatgac gggataaccc
    13501 agcgtttcgt agaatttgag tttttcgcgc caaagggcgg tttcgggcag gtcggctttg
    13561 ttcaggacga tgacggcttc aataccggcg gcttcggcgg caagcagggc gcgttgcagc
    13621 agccgcatgc tcggactcgg gacggcggcg gtaacgataa ggagttgggt aacgttggcg
    13681 gcgatgagtt tggttttcca cgcgtcttgg cggtagagca ggctttggcg cggtaaaaaa
    13741 tcttcaatca caacttgttc ggcgttgacg gggctgatgc ggacacggtc gccgcaggcg
    13801 aaatcgacgc gttttttgcg cgtgctggct tcgtaggttg tgccgtcggg cgtgcgcacg
    13861 atgtagcggc ggccgtagct ggcggtaatt tgggcggtgt cgttcatggt ttctttgggg
    13921 ttgggtgtgg aaatgccgtc tgaaaacggg tgttcggacg gcatcggttc agtcgtgctg
    13981 ccactcgacg tgttcgttga ggaagccgcc gctctggtgc gcccagagtt tggcgtaaag
    14041 cccgcgtttt tcgaggagtt cggcgtgtgt gccttcttcg atgatgcggc ctttgtcgag
    14101 gacgacgagc ctgtccattg cggcgatggt ggaaaggcgg tgggcgatgg cgatgacggt
    14161 tttgccgttc atcattttgt cgaggctttc ttggatggcg gcttcgactt cggaatcgag
    14221 cgcgctggtg gcttcgtcca aaagaagaat cggtgcgtct ttgagcatca cgcgggcgat
    14281 ggcgatacgc tggcgttgac cgccggagag tttcacgccg cgttcgccga cgtgcgcgtc
    14341 atagccgcgc cgccctttgg catcggaaag ttcggggatg aagccggcgg cttcggcgcg
    14401 ttcggcggcg gaaaccattt cggcatcggt cgcgtcgggg cggccgtaaa taatgttgtc
    14461 gcgcacggaa cggtgcagca gcgaggtatc ttgcgtgacc aaaccgattt gggcgcgtaa
    14521 agattcttgg gtaacgccgc ttatgtcctg cccgtcgatc gaaaccgtgc cgctttgcgg
    14581 ttcgtagaag cgcaaaagca ggttgacgat ggtggatttg cccgcgccgc tgcgtccgat
    14641 caagccgact ttttcgcccg ggcggatggt gaggttgaag ccgttgagca gcggtttgcc
    14701 ggcttcgtag cagaaatcga tgtgttcaaa tttgattgcg ccttgcggca cgttcagcgg
    14761 cagtgcccgg ggcttgtcga ggatggtgtg cggtttggac agggttgcca tgccgtcgcc
    14821 gacggtgccg atgttttcaa acagccgcgc ggattcccac ataatgtatt gcgacaaacc
    14881 gttgacgcgc aacgccatgg cggtggctgt agcaaccgcg cccacgccga cctgcccgtt
    14941 gtgccagagc cagatgccca gtgcggcggt ggagagggtc agggaggtgt tgacgatgaa
    15001 gctgcacgaa tgcagcagcg tcgccagccg catttgggcg cgcaccgtaa ccataaattc
    15061 ttccatcgac tgcttggcat aggcggcttc acgcgcgccg tgggagaaga gtttgacggt
    15121 ggcgatattg gaataggcat cggtaatgcg gccggtcatc agcgagcggg catccgcctg
    15181 ccatgcggcg gtttgcccca atttgggaat cagcaggcgc atcaccgaag cgaaaccgac
    15241 aatccagccg ataaagggca gcagcagcca tgagtcgagc gaggcgagaa tcacgccgga
    15301 ggtaatgaaa tacaccgaca cataaacgac catatcggca accgtcatca ccgcgtcgcg
    15361 caacgccagc gcggtctgca tgactttggc ggacacgcgt ccggcaaatt cgtcctgata
    15421 aaaaccgagg ctttggttca gcatcaggcg gtggaagttc cagcgcaggc gcatggggaa
    15481 cacgccctga agggtttgca ggcgcacgtt ggacgcggca aacgcccaca cgaccgaaaa
    15541 caccatcatc gccgccattg ccgccagttc ccaacctttt tcggcaaaca attcggcggg
    15601 cgcgtatttg ccgagccact ccacgatttt gcccataaat tgaaaaatca gggcttccat
    15661 aatgccgatg ccggcggtca gcgcagccag ggcggctatc catttccgca cgccggccat
    15721 gctgctccag acaaaccgcc acaagccttt ttctggcgtt ttcggggcgg cttcgggata
    15781 agggtcgatt cgggactcga accaggaaaa gattttgttc aacattgttt tcgatttcgg
    15841 taaaacagtt tcagacggca tcaaacataa tgccgtctga aaggaaggac aataacgcca
    15901 ttttacggga aaagccgtcg ggaagacagc gcgaggcgga aacgcagggt ttcgtcaggg
    15961 caaacgtcgc gccgccttca gacggcatta tttcagcagg tttttcaaag caaggcgcac
    16021 gccttcgccc acgtccgtcc ctttcggaac gcctttgacc gccgcttttg cctcgcgttc
    16081 gctgtaaccg agggcgagga gcgtgccgac gatgtcttcc gtttcgtcgg cggcgggtgc
    16141 ggcggcaaac agcccgtccg ttaccgcatg cgcgaccagc ttgccgcgca gttccaaaac
    16201 catgcgttcg gcggtttttt tgccgattcc cggggcggag gagaggcgtt tgacatcttc
    16261 ttctgcaacc gcctgcgcca gctcgtctgc cgtcatcgcc gacaaaatgc ccaaagccgt
    16321 tttcgcgccg atgccgctga ccttaatcag ttggcggaat gttttgcgtt cttccgcagt
    16381 ggcaaaacca aataaaagat gtgcgtcttc ccgaatgata agctgggtaa acagttgtac
    16441 gctttcaccc acgggcggca ggttgtagaa ggtctgcatc gatacgtcgg cctcatagcc
    16501 gacaccgttg acatcgatga cgatttgcgg agggtttttt tcaaccagtt tgccggtcag
    16561 tctgctgatc atgtatgccg aatcctgaag tgtcgggtgc aaaatgccgt ctgaaaccgg
    16621 ttcgggcttc agacggcacg gattgtatca aattcagtcg tcgcggcggg aggaaatcac
    16681 gcggccggta cgggcatcga caacgacttt gtattcctgt ccgtttttga cgatttcgac
    16741 atcatagtgc ggacggccgt tgtcgtgttc gagatcgatg tcggtgattt tgccgccgac
    16801 acgcgccaac gctgcttttt cggcttgggc gcggctgatg attttgtctt gtttgctgtg
    16861 ttggtgtgcg gcgtgtccgt ggtcgtcatc gccgtgtccg tcgtggtggg cgagtgcggg
    16921 ggcggaaatg cccatcagtg cggttgcggc ggcggtcaag agaaggcgtt tgaagttcat
    16981 gttttgctcc tgcgaagtat ctggtggtgt ttgaaagacg taaaggcggg acatcaaccg
    17041 gcggtcaata ccgtctgaac cataccgcgc gcctgagctt cggcctcggc ggcgcgttcc
    17101 tgcgaggcaa acggacccat tttgacgacg tattcgtaac ggcgtttttc aatggcgagg
    17161 ttcgggcttg atgtcgaagc ggcgaagttt tgggcggctt ggttcagata ggcttgtgct
    17221 tcgtgttccg taccgaaaga tttcaagtcg ataaagatgt ctttgttttc ggcaaccggt
    17281 gcggatttgc ccgggacgat ttgttcgatt ttgacgtgcg ccgtcccttg gctgacaaag
    17341 cccaattttt gcgcggcggc tttggatacg tcgatgatgc ggttgccgtg gaaggggccg
    17401 cggtcgttga cgcggacgat gacgcttttg ccgtttttgg tattggttac gcgcacatag
    17461 ctggggatgg gcagggtttt gtgggcggcg gtaaaggcgt tcatatcgta tcgttctccg
    17521 ccggaagttt tgcgcccgtg aaacctgccg ccgtaccacg aggcgttgcc ggtttgcgtg
    17581 aattcggcga cttggttttt cggcgtgtag cgttttccgg cgactttgta gctgcggttg
    17641 gcggaggcgt gcagtttttc tgccttgacc actgcgtcgg cggatgccgt ctgaagggag
    17701 tgtgtgccga atgcggcggt gagaaggaaa agggtttttc gggttaaagt caaaacgtgt
    17761 tccgttcttg agttgaagac gaatgggcat catgcccgcc ggatacgttc cgaaccgccg
    17821 tacagtgcgg acggcggttc ggaatgtgtc cggataggtt ttcagacggc atgaacttgc
    17881 gttcaaacgc cgcctgcgta accgtgttgc cgccacgctt caaagagaat cacggcaacg
    17941 gtattggaaa ggttcatact ccggctgccg ggctgcatgg gcaggcggat tttttgcgcg
    18001 gcgggcaggc tgtcgaggat gtcggcaggc agtccgcgcg tttccggccc gaacagtaaa
    18061 acgtcgcctt tttgaaacgc ggtttcatcg gggcgcgccg tgcctttggt ggtcagggcg
    18121 aaaatgcgcc tgcctgcgag tgccttgagg cagtcgtcga agttttcgta caccgtcagg
    18181 ctggcgaatt cgtggtagtc gagcccggcg cgtttcattt tggcggaatc caatgggaag
    18241 ccgagcggtt tgacaaggtg caaatccgcg ccggtattgg cgcacaggcg gatgatgttg
    18301 cccgtgttcg gcgggatttc cggctggtat aaaacgatgg taaacataaa tatcaatcac
    18361 ttataggcgc gtaaccttgc cacaaggcgg atggggtgtc aaaaaattta gttatttttt
    18421 cattggcgtg cgtgccagcg tccagcagca gatgcggttc gcgcccgatt ttttcagcgt
    18481 ctttgccaat tcgtccagcg tcgcgccggt ggtaaagaca tcgtcgatta acagaatatt
    18541 acagttttcc ggtatcggtg tgcggatttc aaaggcgttt ttgatgtttc gccgccgttc
    18601 gctgcctttg agcgtgcttt gcggcgggcg gtggtgtcgg aatacggtgt gtcggggcag
    18661 tatctgccag ccgtagcgtt gtgccaacaa cccgacgatg ctttcacttt ggttgaaccc
    18721 gcgttgcagc agccgctccc tgcttagcgg tacgggcagg acgaaatcga aacattcgtc
    18781 tgcaagccgg tcgggcggat tctgcatcat caggtctgcc agcggctgca ccatgctcaa
    18841 atcagccaag tgcttcagcg cgtgtatcat attgctgacg ggcggttcgt aatgcagcga
    18901 agcccacatc cggtcgaatg cgggcggttt tttctgacag ccgccgcaca ccgcgccgcc
    18961 ttggatgtgc ctgaaacaca gggggcagct gtttgccgcg tcggtgcggt atgccgccaa
    19021 atcgtcgcgg cagccggcgc agatgccgtc tgaaacgccg gacgaaccgt ggcataatac
    19081 gcaacgcctg atagtgggcg cgtctgcgat gcgccgccaa cgagagagaa aatccatgcc
    19141 tgatgccgtc aaaaaagttt acctgataca cggttggggg gcgaaccgcc acatgttcga
    19201 cgatttgatg ccgcgcctgc ctgcaacgtg gccggtgtcc gccgtcgatt tgcccggaca
    19261 cggcgacgcg cccttcgcgc aacccttcga tattgaggca gccgccgacg ctgttgccgc
    19321 acaaatcgat acgcccgccg acattctcgg ctggtcgctc ggcggattgg tcgcgctgta
    19381 tctggcggcg cgccatcccg acaaagtccg ttcgctctgc ctgacggcga gtttcgcacg
    19441 gctgacggct gccgaagatt atcccgaagg gcttgccgcg cctgcactgg gcaaaatggt
    19501 cggcgcgttc cgttcggatt atgccaaaca tatcaaacag tttctacaac tccagcttct
    19561 gcacacgcct gatgcggacg gaatcatagg cagaatcctg cccgatttgg cacggtgcgg
    19621 cacgccctcc gccttacagg aagctttgga cgcggcggaa agggcggatg cgcggcattt
    19681 gttggacaag atagatgttc cggtactgct ggtgttcggc ggcaaagacg cgattacgcc
    19741 gccgcgtatg ggcgagtatc tgcaccggca tttgaaaggc agcaggctgg ttgtgatgga
    19801 aaaggcggca cacgcgccgt ttttgagcca tgcggaagcg tttgccgcgc tgtaccgcga
    19861 ctttgttgaa ggggtttgac atgaatccgc aggacaaatg ctggcaggtt caccgccatc
    19921 tcgccgaata tgccgaccaa cgcctgacac tcgtccgcaa cgcgcccaag tatatcctgc
    19981 ttgccggtgc ggatgcggac atcagccgca gcctgctggc gaaacgctat ccgcaggcgg
    20041 tatttgaaga atacgattcc cgtgcggact ttttggcggc tgccgctgcc gcccgcaaag
    20101 gcggtttttg gcaaaggttt acgggtaagg gcgtggtgca acactgccaa tccccgatcg
    20161 cgccgctgcc cgaagcgtgt gctgatatgt tgtggtcgaa tctcggactg ttggcggcgg
    20221 aacaaatcct tcctgtgctg cacaactggg cgtgcgcctt gaagacggac gggctgctgt
    20281 tttttacctg cttcgggcgc gacactttta ccgaactgaa atgccgtctg aaagaaaacg
    20341 gcattgaaag ccgcagcgtg atgtttcccg atatgcacga cttgggcgat atgcttgctg
    20401 aaaacggctt ttacgacccc gttaccgata cggcgaagct ggtgttggat tacaaaaagg
    20461 cggaaacgtt ttgggcggat atggacacgc tgggcgtttg gcgggcgatg gcgtggaacg
    20521 atgaaaacgc cgcgcgttcg tgtgtcggga caatatttga gcgggaaggc ggtttgggca
    20581 ttacgctgga aacggtgtac ggacacgccg tgaaaaaact gatgctgccg caaggggaga
    20641 acgtggtgca gttttttccg aagagatgat gtgcagatgc cgtctgaagc cgtttccagg
    20701 tttcagacgg catttgtctg tgaaaaccga cagaaataaa ggaaatgccg atgtatagtg
//
LOCUS       DAXIFD010000011        20614 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.011, whole genome shotgun sequence.
ACCESSION   DAXIFD010000011 DAXIFD010000000
VERSION     DAXIFD010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20614
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.011"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..231)
                     /locus_tag="ACFOCN_000343"
     CDS             complement(<1..231)
                     /locus_tag="ACFOCN_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HFC6969553.1"
                     /translation="MIIDVKVPMLSESVSEGTLLEWKKKVGEAVARDEILIDIETDKV
                     VLEVPSPQAGVLVEIVAQDGETVVADQVLARID"
     gene            complement(331..3159)
                     /locus_tag="ACFOCN_000344"
     CDS             complement(331..3159)
                     /locus_tag="ACFOCN_000344"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HFC6969554.1"
                     /translation="MMDEKLNFSYLFGSNAPYIEELYEAFLENPDAVDEKWKQYFTDL
                     SKQPGTVAVDVAHTPIRESFVTLAKKKIASAVAGGADEAMLKKQVSVLRLISAYRIQG
                     VGAAQLDPLKRIPPRDIEALDPKFHGLSDADMALQFNMGEGDFANRGKLPLSQIISNL
                     KQTYCGHIALEYIYIPNTEERRWVRNYFESVLSTPHYNADQKRRILKEMTAAETLERY
                     LHTKYVGQKRFGVEGGESAIAGLNYLIQNAGKDGVEEVIIGMAHRGRLNVLVNILGKK
                     PGDLFAEFEGRAEIKLPSGDVKYHMGFSSDIATPHGPMHVSLAFNPSHLEIVNPVVEG
                     SARAKQKRLGENGRDKVLPVLIHGDSAFIGLGVNQATFNLSKTRGYTTGGTVHIVINN
                     QIGFTTSDIRDTRSTVHCTDIAKMVSAPVIHVNGDDPERVCFAIQAALDYRKKFHKDI
                     VIDVVCYRKWGHNEGDDPTLTQPMMYKKVSQHPGARALYTEQLIAEGVVTQAEADGYI
                     QAYRDALDKGEHVEQTTLSNFQRTQIDWSKYQGKDWREHIETGLPAADIERLTEKFTA
                     VPEGFALHPTAKRVIEARKAMASGKQAIDWGMAETLAYASLVTKGHGVRISGEDSGRG
                     TFSHRHAVLHDQKREKWDDGTYVPLRHMGEGMGEFLVIDSILNEEAVMAFEYGFACSA
                     PDKLTIWEAQFGDFANGAQVTIDQFLSSGETKWGRLCGLTTILPHGYDGQGPEHSSAR
                     VERWLQLCSENNMQVIMPSEASQMFHLLQRQVLGSYRKPLVIFMSKRLLRFKGAMSPL
                     ENFTEGSTFRPVIGDTAERASNDSVKRVALCAGQVYYDLEAGRAERKLEDDVAIVRVE
                     QLYPFPYDEVKAELAKYPNAKSVVWAQEEPKNQGAFYQIRHRIEDVISEEQKLSYAGR
                     PSSASPAVGYSSKHIAQLKQLVEDALAL"
     gene            complement(3364..4647)
                     /gene="gltA"
                     /locus_tag="ACFOCN_000345"
     CDS             complement(3364..4647)
                     /gene="gltA"
                     /locus_tag="ACFOCN_000345"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004108 - citrate (Si)-synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HFC6969555.1"
                     /translation="MSKSIKLNVPGQAGLELPVLEASIGHDVVDIRGLTKNTGLFSFD
                     PGFVSTASCESKITYIDGDQGLLYYRGYPIEQLAEKSDYLEVCYLLIYGELPTPEQKA
                     EFDNTVRRHTMVHEQLTWFFRGFRRDAHPMAMMVGVVGALSAFYQDSLDISNPEHRKI
                     AIYRLISKIPTIAAMCYRYSNGLPFNYPKNNLSYSENFLHMMFATPCEDYKPNPVLAR
                     ALDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGASHGGANEAVLKML
                     DEIGDVSNVAAYMEGVKQRKYRLMGFGHRVYRNMDPRASIMRETCYEVLKELGLEDSP
                     KFKLAMELEQIALKDPFFIERKLYPNVDFYSGIVLSALGIPTEMFTVIFALSRSVGWI
                     SHWHEMISDPSLKIGRPRQLYTGSERRDYVPAGER"
     gene            complement(4759..5007)
                     /locus_tag="ACFOCN_000346"
     CDS             complement(4759..5007)
                     /locus_tag="ACFOCN_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HFC6969556.1"
                     /translation="MMVFDDIAKRKIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELS
                     EFSEILEFQDQELLALINGHSETDKGHLIPMLEKIRRA"
     gene            complement(5011..5718)
                     /locus_tag="ACFOCN_000347"
     CDS             complement(5011..5718)
                     /locus_tag="ACFOCN_000347"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (quinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HFC6969557.1"
                     /translation="MEKMSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKA
                     QDDTLSFRRSCREGICGSDGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIV
                     DMTQFFKQYHSVKPYVVNDNPIDADKERLQTQEERKELDGLYECILCACCSTACPSFW
                     WNPDKFVGPSGLLNAYRFIADSRDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLN
                     PTRAIGKIKEIMLKRVV"
     gene            complement(5839..7602)
                     /gene="sdhA"
                     /locus_tag="ACFOCN_000348"
     CDS             complement(5839..7602)
                     /gene="sdhA"
                     /locus_tag="ACFOCN_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HFC6969558.1"
                     /translation="MGFPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRS
                     HTVAAQGGISASLGNVQEDRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHM
                     GMPFDRVESGKIYQRPFGGHTAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQF
                     FVEWTAQDLIRDENGDVVGVTAMEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMN
                     TGDGLGICARAGIPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNADGERFMERY
                     APTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHVLLKIDHIGAEKIMEKLPGIREISI
                     QFAGIDPIKDPIPVVPTTHYMMGGIPTNYHGEVVVPQGDEYEVPVKGLYAAGECACAS
                     VHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKPLPANAGELTRQRIERLDSQT
                     DGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIAERVKRTEIKDKSKVWNTA
                     RIEALELDNLIEVAKATLVSAEARKESRGAHASDDHPERDDENWMKHTLYHSDTNTLS
                     YKPVHTKPLSVEYIKPAKRVY"
     gene            complement(7605..7946)
                     /gene="sdhD"
                     /locus_tag="ACFOCN_000349"
     CDS             complement(7605..7946)
                     /gene="sdhD"
                     /locus_tag="ACFOCN_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HFC6969559.1"
                     /translation="MVERKLTGAHYGLRDWAMQRATAVIMLIYTVALLVVLFSLPKEY
                     SAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVG
                     CLVYSIKVIWG"
     gene            complement(7940..8317)
                     /gene="sdhC"
                     /locus_tag="ACFOCN_000350"
     CDS             complement(7940..8317)
                     /gene="sdhC"
                     /locus_tag="ACFOCN_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HFC6969560.1"
                     /translation="MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYF
                     LSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTA
                     RNTAKAVFASALVLTVVLGALLW"
     gene            complement(8596..9999)
                     /locus_tag="ACFOCN_000351"
     CDS             complement(8596..9999)
                     /locus_tag="ACFOCN_000351"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6969561.1"
                     /translation="MKKIQADVVVIGGGTAGMGAFRNARLHSDNVYLIENNVFGTTCA
                     RVGCMPSKLLIAAAEARHHALHTDPFGVHLDKDSIVVNGEEVMQRVKSERDRFVGFVV
                     ADVEEWPADKRIMGSAKFIDEHTVQIDEHTQITAKSFVIATGSRPVILPQWQSLGNRL
                     IINDDVFSWDTLPKRVAVFGPGVIGLELGQALHRLGVKVEIFGLGGIIGGISDPVVSD
                     EAKAVFGEELKLHLDAKTEVKLDADGNVEVHWEQDGEKGVFVAEYMLAAVGRRPNVDN
                     IGLENINIEKDARGVPVADPLTMQTSIPHIFIAGDASNQLPLLHEAADQGKIAGDNAG
                     RYPNIGGGLRRSTIGVVFTSPQIGFVGLKYAQVAAQYQADEFVIGEVSFKNQGRSRVM
                     LVNKGHMRLYAEKATGRFIGAEIVGPAAEHLAHLLAWAHQMKMTVPQMLDMPFYHPVI
                     EEGLRTALRDADAKLKA"
     gene            complement(10248..10985)
                     /locus_tag="ACFOCN_000352"
     CDS             complement(10248..10985)
                     /locus_tag="ACFOCN_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HFC6969562.1"
                     /translation="MALQDRTGQKVPSVVFRTRVGDTWKDVSTDDLFKGKKVVVFSLP
                     GAFTPTCSSSHLPRYNELFGAFKENGVDAIYCVSVNDTFVMNAWAAEEESDNIYMIPD
                     GNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVNDGVVEKMFIEPEEPGDPFKVSDADTM
                     LKFVAPDWKAQESVAIFTKPGCQFCAKAKQALQDKGLSYEEIVLGKDATVTSVRAITG
                     KMTAPQVFIGGKYIGGSEDLEAYLAKN"
     gene            complement(11264..13540)
                     /gene="metE"
                     /locus_tag="ACFOCN_000353"
     CDS             complement(11264..13540)
                     /gene="metE"
                     /locus_tag="ACFOCN_000353"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HFC6969563.1"
                     /translation="MTTLHFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLRE
                     KNWKHQAAANADFVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN
                     KDQFAIEMTKWFDTNYHYLVPEFHADTEFKANAKHYVQQLQEAQALGLKAKPTVVGPL
                     TFLWVGKEKGTVEFNRLSLLQKLLPVYVEILNALVEAGAEWIQIDEPALTVDLPKEWV
                     EAYKDVYATLSKVSAKILLSTYFGSVAEHAALLKSLPVDGLHIDLVRAPEQLDAFADY
                     DKVLSAGIIDGRNIWRANLNKVLETVEPLQAKLGDRLWISSSCSLLHTPFDLSVEEKL
                     KANKPDLYSWLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRA
                     DVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFK
                     KGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQY
                     GWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFV
                     RNDIPRSTVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLNWAG
                     ESFRLSSAGCEDSTQIHTHMCYSEFNDILPAIAAMDADVITIETSRSDMELLTAFGEF
                     KYPNDIGPGVYDIHSPRVPTEAEVEHLLRKAIEVVPVERLWVNPDCGLKTRGWKETLE
                     QLQVMMNVTHKLRAELAK"
     gene            complement(13678..14556)
                     /gene="metF"
                     /locus_tag="ACFOCN_000354"
     CDS             complement(13678..14556)
                     /gene="metF"
                     /locus_tag="ACFOCN_000354"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HFC6969564.1"
                     /translation="MNYAKEINALNNSLSDLKGDINVSFEFFPPKNEQMETMLWDSIH
                     RLQTLHPKFVSVTYGANSGERDRTHGIVKRIKQETGLEAAPHLTGIDASPDELRQIAK
                     DYWDSGIRRIVALRGDELPGYEKKPFYAEDLVKLLRSVADFDISVAAYPEVHPEAKSA
                     QADLINLKRKIDAGANHVITQFFFDVERYLRFRDRCVMLGIDVEIVPGILPVTNFKQL
                     GKMAQVTNVKIPSWLSQMYEGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLN
                     RSELTYAICHILGVRP"
     gene            14756..15031
                     /locus_tag="ACFOCN_000355"
     CDS             14756..15031
                     /locus_tag="ACFOCN_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HFC6969565.1"
                     /translation="MKPNIHPDNYRTVLFFDSSANEGWLIRSCAETHGKTMVWTDGKE
                     YPLFSLDTSSASHPVYTGKQRNVNTEGRASKFNQRFQSVMSSFRKDK"
     gene            15031..15156
                     /gene="ykgO"
                     /locus_tag="ACFOCN_000356"
     CDS             15031..15156
                     /gene="ykgO"
                     /locus_tag="ACFOCN_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HFC6969566.1"
                     /translation="MQVLSSLKTAKQRHRDCQIVRRRGKVYVICKSNPRFKARQR"
     gene            complement(15262..15462)
                     /locus_tag="ACFOCN_000357"
     CDS             complement(15262..15462)
                     /locus_tag="ACFOCN_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969567.1"
                     /translation="MIGRLFRIFFFFALAALIMNRLFSRRQKRALREVAEISARVLLG
                     AAAATLFWYLFMLYFKHIPDSY"
     gene            15605..16744
                     /locus_tag="ACFOCN_000358"
     CDS             15605..16744
                     /locus_tag="ACFOCN_000358"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HFC6969568.1"
                     /translation="MSQNASVGIVTPQKIPFEMPLVLENGKTLPRFDLMIETYGELNA
                     EKNNAVLICHALSGNHHVAGRHSAEDKYTGWWDNMVGPGKPIDTERFFVVGLNNLGGC
                     DGSSGPLSINPETGREYGADFPVVTVKDWVKSQAALADYLGIGQWAAVVGGSLGGMQA
                     LQWAISYPERVRHALVIASAPKLSTQNIAFNDVARQAILTDPDFNEGHYRSHNTVPAR
                     GLRIARMMGHITYLAEDGLGKKFGRDLRSNGYQYGYGVEFEVESYLRYQGDKFVGRFD
                     ANTYLLMTKALDYFDPAADFGNSLTRAVQDVQAKFFVASFSTDWRFAPERSHELVKAL
                     IAAQKSVQYIEVKSAHGHDAFLMEDEAYMRAVAAYMNNVYKECQQ"
     gene            16741..17322
                     /gene="metW"
                     /locus_tag="ACFOCN_000359"
     CDS             16741..17322
                     /gene="metW"
                     /locus_tag="ACFOCN_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HFC6969569.1"
                     /translation="MNLRDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYG
                     IEIDTDSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLM
                     RVAKQAIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAK
                     NNIRVLERAVMTGNRQVKHFPNLLGSLAFYRVG"
     gene            17439..18284
                     /locus_tag="ACFOCN_000360"
     CDS             17439..18284
                     /locus_tag="ACFOCN_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NMB0938 family lipoprotein"
                     /protein_id="HFC6969570.1"
                     /translation="MKNKTSSLLLWLAAMMLTACSPSKEDKTKENGASAASSTASAAS
                     SSAPQTDLQPAASAPDNVKQAESVPPSNCTDLHPATGIDDLMQQIAEHIDSDCLFALS
                     HHELETRFGLPGGGYDNIQRLLFPDIRPEDPDYHQKIILAIEDLRYGKRTISRQAQDA
                     LMEQERRLREATLLLIQGSQETRGQGEEPKRTRYFEVSATPAYSSRHNNGLGGNFQYI
                     GQLPGYLKIHGEMLENQSLFRLSNRERNPDKPFLDIHFDENGKITRIVVYEKNIYFNP
                     NLGRR"
     gene            complement(18334..18894)
                     /gene="efp"
                     /locus_tag="ACFOCN_000361"
     CDS             complement(18334..18894)
                     /gene="efp"
                     /locus_tag="ACFOCN_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HFC6969571.1"
                     /translation="MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNL
                     LTGAASETIYKADDKFDVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALK
                     FIVDGMEDQCEVTFYEGNPISVELPTIIVREVEYTEPAVKGDTSGKVMKTARLVGGTE
                     IQVMSYIENGDKIEIDTRTGEFRKRA"
     gene            complement(18937..20085)
                     /gene="earP"
                     /locus_tag="ACFOCN_000362"
     CDS             complement(18937..20085)
                     /gene="earP"
                     /locus_tag="ACFOCN_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HFC6969572.1"
                     /translation="MNTPPFVCWIFCKVIDNFGDIGVSWRLARVLHRELGWQVHLWTD
                     DVSALRALCPDLPDVPCVHQDIHVRTWHSDAADIDTALVPDIVIETFACDLPENVLHI
                     IRRHKPLWLNWEYLSAEESNERLHLMPSLQESVQKYFWFMGFSEKSGGLIRERDYRNA
                     VRFDTEALRERLMLPEKNAPEWLLFGYRSDVWAKWLEMWRQAGSPMTLLLAGTQIIDS
                     LKQSGVIPQDALQNDGDVFQTASVRLVKIPFVPQQDFDKLLHLADCAVIRGEDSFVRA
                     QLAGKPFFWHIYPQDENVHLDKLHAFWDKAHGFYSPETASVHRRLSDDLNGGEALSAT
                     QRLECWQILQQHQNGWRQGAEDWSRYLFGQPSASEKLAAFVSKHQKIR"
     gene            complement(20104..20382)
                     /locus_tag="ACFOCN_000363"
     CDS             complement(20104..20382)
                     /locus_tag="ACFOCN_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969573.1"
                     /translation="MSRNLLVRWLAVCLIPLATLAVFAANPPEDKLQHLINGIILACE
                     ATFLFKFVLFDTIKHHLKQEFDLKRQTMLLFIPIILLIVYLFHYFGAF"
BASE COUNT         5119 a         5227 c         5170 g         5098 t
ORIGIN      
        1 atcgatacgt gccaaaactt ggtcggcaac aacggtttca ccgtcttgcg ctacgatttc
       61 aaccaatacg ccggcttgtg gagaaggtac ttccaaaacc actttgtccg tttcgatatc
      121 gatcaggatt tcgtcacggg caactgcttc gccaactttt ttcttccatt ccaagagcgt
      181 gccttcagat acgctttcag acagcatagg tacttttaca tcaataatca ttttgtgtct
      241 ccaatggccc tttcagacgg cctgttgtgt gtttttcatt ctgcatatgg gtgttccgcc
      301 tgagcagcct cagacggaat gctacttggc ttacaatgcc aaagcgtctt caaccaattg
      361 tttcaattga gcaatgtgtt tgcttgagta gcccactgca ggcgatgcgc tgcttggacg
      421 accggcataa gacagttttt gctcttcgct gataacgtct tcgatgcggt ggcggatttg
      481 gtagaacgcg ccttggtttt tcggctcttc ttgtgcccaa accacagatt ttgcgttcgg
      541 atatttcgcc agttcggctt taacctcgtc gtatgggaac ggatacagct gctcaacgcg
      601 gacaatagcg acatcatctt ccagtttacg ttcggctcga ccggcttcca agtcatagta
      661 aacctgaccg gcacacaatg ccacgcgttt cacgctgtcg ttgcttgcgc gttcggcggt
      721 atcgccgata accggacgga aagtcgaacc ttcggtgaag ttttccagcg ggctcattgc
      781 ccctttgaat cgcaacaggc gtttggacat gaaaatcact agcggtttgc ggtatgaacc
      841 taagacttga cgttgcaaga ggtggaacat ttgcgacgct tcagacggca tgatgacttg
      901 catattgttc tcagaacaca gttgcaacca acgttctacg cgtgcagaag agtgctcggg
      961 accttgaccg tcgtagccgt gcggaaggat ggtggtcaga ccgcacaaac gaccccattt
     1021 ggtttcgcct gaagacagga attggtcaat agtcacttgc gcgccgttgg cgaagtcacc
     1081 aaattgagct tcccaaatgg tcagcttgtc aggcgcggag caggcaaagc cgtactcgaa
     1141 cgccatcacg gcttcttcgt tcaaaatgga gtcgataacc aagaactcgc ccataccttc
     1201 gcccatatgg cgcagaggaa cataagtacc gtcatcccat ttttcacgtt tttgatcgtg
     1261 caatactgca tgacggtgtg agaatgtacc gcgcccggag tcctcaccgg agatacgcac
     1321 gccatgacct ttggttacga ggctggcgta tgccaaggtt tcggccatac cccaatctat
     1381 ggcctgtttg ccggatgcca tggctttacg cgcttcaatc acacgttttg cagtcggatg
     1441 cagggcaaag ccttccggta cggcggtaaa cttctcagtg agacgctcaa tatctgcggc
     1501 aggcaaaccg gtttcgatgt gttcgcgcca atctttgcct tggtatttgc tccagtcgat
     1561 ttgcgtgcgt tgaaagttgc tcaacgttgt ttgctcgacg tgttcgcctt tgtccaaagc
     1621 atcacggtag gcttggatgt aaccgtctgc ctcggcttgg gttaccacgc cttcggcaat
     1681 cagttgctcg gtgtacaaag cacgcgcacc ggggtgttgc gatacttttt tgtacatcat
     1741 cggttgggtc aaggtcggat catcgccctc gttgtgaccc catttacggt agcagacaac
     1801 gtcaatcacg atgtctttat ggaatttttt gcggtaatcc aaagcggctt ggatggcaaa
     1861 gcaaacacgc tcaggatcat cgccgttcac atggataacc ggagcggaaa ccatttttgc
     1921 gatatcggta cagtgtacgg ttgaacgggt atcgcggata tcggaagtgg taaagccgat
     1981 ttgattgttg atgacgatat gaaccgtacc gccggtggta taaccgcgcg ttttagacag
     2041 gttgaatgtc gcttggttga cacccaaacc gataaatgcg gagtcgccgt gaatcaatac
     2101 gggcaagact ttatcgcggc cgttttcgcc caaacgtttt tgcttggcgc gtgcagaacc
     2161 ttccactacc ggattgacga tttccaagtg tgacgggttg aacgccaaag aaacgtgcat
     2221 cggaccatgt ggagtggcga tgtcggagct gaagcccatg tggtatttca cgtcgccgct
     2281 aggcaatttg atttcggcac ggccttcaaa ctcagcgaac aaatctccgg gttttttacc
     2341 caaaatgttc accaaaacat tcagacggcc acggtgcgcc ataccgatga tgacttcttc
     2401 cacgccgtct ttaccggcgt tttgaatcag gtagttcaaa ccggcaatcg cgctttcgcc
     2461 gccttcgaca ccgaaacgtt tctgaccgac atatttggta tgcagataac gttccaaagt
     2521 ctcggcagca gtcatctctt tcaagatacg gcgtttttga tcggcattgt aatgcggtgt
     2581 ggacaatacg ctttcaaaat aattgcgtac ccagcggcgc tcttcggtat tgggaatata
     2641 gatatattcc aatgcgatgt ggccgcagta ggtttgtttg aggttgctga tgatttggga
     2701 caaaggcagt ttgccgcgat tggcaaaatc gccctcgccc atattgaatt gaagcgccat
     2761 atcggcatca gacagaccgt ggaatttcgg atcgagggct tcaatatcgc gcggggggat
     2821 acgtttgagc ggatcaagtt gggctgcacc cacgccttgg atacgatagg cagaaatcag
     2881 ccgtaaaacg ctgacttgct tcttcagcat tgcctcatcc gcaccgcccg caacggcaga
     2941 tgcaattttc tttttcgcca aagtaacaaa tgattcgcga atcggtgtgt gtgcgacatc
     3001 gacagcaacc gtccccggct gtttgctcaa atcggtgaaa tactgcttcc atttttcatc
     3061 aaccgcatcg gggttttcca aaaaagcctc gtacaattcc tcaatgtagg gtgcgttcga
     3121 accgaacagg taagagaaat tgagtttttc gtccatcatg gcgtgcgctc ttttctttaa
     3181 aatataaaca aagggtagaa gtccgcgtcc tgacggctga actgatgccg tctgaaaaga
     3241 cattttattc taccctattt taaaccggat tgcctgtatt gatttcatcc gactacaatc
     3301 aaatgtatac agaaagcaat ccgattctct aatattgcct gtttgacaat atattaatgt
     3361 atgttacctc tctcctgccg gcacataatc gcggcgttcc gaaccggtat aaagctggcg
     3421 cgggcggccg attttcagcg aaggatcgct gatcatctcg tgccagtgcg aaatccagcc
     3481 cacgctgcgc gacagggcga agatgacggt aaacatttcg gtcgggatgc ccagcgcgga
     3541 caggacgatg ccggaataga aatcgacgtt tggatacagc ttgcgttcga taaagaacgg
     3601 gtctttcagc gcaatctgtt ccaattccat cgccagtttg aatttcggac tgtcttccaa
     3661 gcccaattcc ttcaaaactt catagcaggt ttcgcgcata atgctggcac gcggatccat
     3721 attgcggtac acgcggtgac cgaagcccat cagacggtat ttgcgttgtt tcacaccttc
     3781 catgtatgcg gcaacattag acacatcgcc gatttcgtcc aacattttca acacggcttc
     3841 gttcgcaccg ccgtgcgaag caccccacag gcaggcgata ccggcagcaa tacaggcaaa
     3901 cgggttcgca cccgaagacc ctgccagacg gacggttgaa gttgaggcgt tttgctcgtg
     3961 gtcggcatgc aaaataaaga tgcggtcgag cgcgcgtgcc aaaacgggat tgggtttgta
     4021 gtcttcacac ggcgtggcga acatcatatg aaggaagttt tcggaataag aaagattatt
     4081 cttcggataa ttgaacggca gaccgtttga atagcggtag cacattgccg caatggtcgg
     4141 gattttggaa atcaggcggt aaatcgcgat tttgcggtgt tcgggattgc taatgtccaa
     4201 gctgtcttgg tagaacgcag acagcgcacc gaccacgccg accatcatcg ccatcggatg
     4261 cgcgtcgcgg cggaaccccc ggaagaacca agtcagctgt tcatgcacca tcgtgtggcg
     4321 gcggacggta ttgtcaaatt ctgccttttg ctcgggagtc ggcagttcgc cgtaaatcaa
     4381 caggtagcag acttccaaat aatcggactt ttcggccagc tgctcgatgg ggtatccgcg
     4441 ataataaagc aagccttgat cgccgtcgat gtaagtaatt ttagactcac agcttgcggt
     4501 tgaaacaaat ccggggtcga aagaaaacaa acctgtattt tttgtcagcc cccgaatgtc
     4561 aaccacatcg tgcccgatgc tggcttccaa taccggcagc tccaaacctg cctgacccgg
     4621 tacgttgagt ttgattgatt tggacatatt attgctcctt tgcaagttat aacccacgtt
     4681 actgcatccg cagcacgttc tttgccttca gacggctttt gcattttgaa atctgcctgc
     4741 aggcagattt cagatgcctc atgcccgtct gattttttca agcatcggga taaggtgccc
     4801 tttgtccgtt tccgaatgcc cgttaatcaa ggcaagcaat tcttgatctt gaaattcaag
     4861 gatttcggaa aactcggaca gctctttatc gctcaaatgc tcgaattctt tttccataaa
     4921 cctgccgaag attaaatcta attccaacaa tccccggcgg gtttgaaaac ggattttccg
     4981 tttggcaata tcgtcaaaaa ccatcatttc ttaaacgacc cgtttcaaca taatctcttt
     5041 aatcttaccg atggctcggg tcggattcaa gtgtttagga catacgtcta cgcagttcat
     5101 aatggtgtgg caacggaaca aacggtatgg gtcgttcaga ttatccaaac gctcattagt
     5161 gatggtatca cggctgtccg caatgaaacg gtaagcattc agcaaaccgg acggaccaac
     5221 gaatttatca gggttccacc aaaatgacgg gcaggcagtc gaacagcagg cgcacaaaat
     5281 acactcgtac aaaccgtcca actctttacg ctcttcctga gtttgcagac gctctttgtc
     5341 cgcatcaatc ggattatcgt tgacaacata aggtttgacg gaatggtatt gtttgaagaa
     5401 ctgggtcata tccacaatca ggtcgcggat aacaggcaga cctggcagag gacggatttt
     5461 aaccggctgt ttcaagccac gcagatcggt caaacacgcc aagccgtttt tgccgttgat
     5521 gttcataccg tccgatccgc aaatgccttc gcggcaggag cggcggaaag acaaggtatc
     5581 gtcttgtgct ttcaggcgta ccaaagcatc caaaagtttc acgtcggtcg gttccaattc
     5641 caactcgtaa cgctgcatat aaggcttggc atcaacatcc gggttgtaac ggtaaatttc
     5701 aaaactcatt ttttccatga gaagtgttcc ttttctcatc aactgcccaa tgattttgta
     5761 ttataaattc aagcagttca atgtgggtat ggttagattt cagacgagct tatgaggcga
     5821 agaccgtctg aaaacgcatc aataaacgcg cttggccggt ttgatgtatt ccacgctcaa
     5881 aggcttggta tgtaccggtt tgtaagacaa agtattggta tctgaatggt acagcgtatg
     5941 tttcatccag ttttcatcat cgcgctcagg atggtcgtct gaagcgtgcg caccgcgtga
     6001 ttctttacgt gcttcggcag acaccaaagt cgctttcgcc acttcaatta ggttatccaa
     6061 ttccaaagcc tcgatacgcg cggtattcca cactttgctc ttgtctttga tttcggtacg
     6121 tttcacacgc tcggcaatcg ccatgacttc tcgaacgcct ttgctcagaa tctcatcagt
     6181 acggaacacg ccggcgtgca attgtacgga gcgttgcagt tcgcggcgca atgcatcaac
     6241 gttttcacca tcggtttggc tgtccaaacg ctcgatacgt tggcgggtca actcaccagc
     6301 attagcaggc aaaggtttcc agtcgctttg ctctttgatg aatttaatca tgctgtcgcc
     6361 ggcagcttta ccgaatacca ccaagtccaa cagggagttg gtacccaagc ggttcgcacc
     6421 gtgtacggaa gcacaagcgc actcacctgc cgcatacaga ccttttacag gcacttcgta
     6481 ttcgtcgcct tgaggaacga caacttcgcc atggtagttg gtcggaatac cgcccatcat
     6541 atagtgggta gtcggcacaa cgggaatcgg gtctttaatc ggatcgatac cggcgaactg
     6601 aatggaaatc tcgcggatgc ccggcagttt ttccataatt ttttctgcgc cgatatggtc
     6661 gattttcagt aagacatggt ctttgttttt accgcagccg cgaccttcgt agatttccat
     6721 cgccatcgcg cgggaaacaa cgtcgcgaga agccaagtct tttacggtcg gcgcatagcg
     6781 ttccataaag cgttcgccgt cggcattcaa cagaataccg ccctcgccgc gtacgccttc
     6841 ggtaatcaac acgcccgcac ctgccacgcc ggtcgggtgg aattgccaga attccatatc
     6901 ttccaacgga atacccgcac gcgcgcaaat gcccaaacca tcgccggtat tcatataggc
     6961 attggtagaa gaagcataaa tacgaccgcc accgccggta gcaaacatca cagctttagc
     7021 gtggaaaata taaacttcgc cggtttccat ttccatggcg gttacgccga cgacatcgcc
     7081 gttttcatca cgaatcaaat cttgtgccgt ccattccaca aagaattgcg tattggcacg
     7141 gacgttttgt tggtacaaag tatgcagcat cgcatgacct gtacggtcgg caaccgcaca
     7201 ggcgcgttct accgcgcgtt taccgtgttc ggcagtatgg ccgccgaaag gacgctgata
     7261 aattttaccg ctttccacac ggtcaaaagg catacccatg tgttccaact caattacggc
     7321 ttcaggcgcg gcgcggcaca taaactcaat cgcatcttgg tcgcccaacc agtcggaacc
     7381 tttcacggta tcgtacatgt gccagtccca acggtcttcc tgcacattac ccagagaggc
     7441 ggaaataccg ccctgcgccg ctacggtatg cgaacgggtc gggaacactt tagacaaaac
     7501 ggcacaattc agaccggatt tggataattg gagggctgcg cgtaaacctg caccaccacc
     7561 gccgacaatc acggcatcaa acttgcgaac aggaaaaccc atacttaccc ccaaattact
     7621 ttaattgaat acaccaagca gccgaccagc cagacgatgg tggcaacctg caaaaacaaa
     7681 cgcacgccga agggtttgat atagtccatc cacaaatcgc ggatacccac ccaagcgtgc
     7741 aagaatacgg cgatgaagct cacttgggta aatactttta cccaagtttg actaaaaaat
     7801 gcctgccatg ccgaatattc tttaggcagg gaaaatagaa ccactaaaag tgcaacggta
     7861 taaatcaaca taataaccgc agtcgcacgt tgcatcgccc aatcgcgcaa accgtaatgg
     7921 gcaccggtca atttacgttc taccataaca acgctcccaa aacgacagtc aaaaccaatg
     7981 cagaagcaaa tacggcttta gcggtattgc gcgcagtatt cagctcaagg cctttgtgcg
     8041 catccaaaaa taaaaagcgg ataccggcga gagaatggtg cagataagcc cacaatacac
     8101 cgattaaaac cagcttgacc aaaggatggg aaacaatggc acggtaagtt tcaaatgcag
     8161 actcttgact cagggtaccg gacaggaaat acagcaggaa aggcagcata ataaacagcc
     8221 cgaccccgct gatgcggtga aggatggaaa ctatcccggg tatcggcaga cggatgttcg
     8281 gcaaatccag ataaacagga cgcggtttgg cagacatagt caattcctct gtagttatat
     8341 atcgactcaa aaaccgtaaa cccattgcta cactgggtta cataaacgtt aatttacctg
     8401 ttttatccca ttttgaacag tgtattttaa aaacaaactg atagattttg acaaacacgc
     8461 gtggaaacag cagattaaaa gaaagatttt tagttttgcc gcccccttcc cgacacggta
     8521 tcagcatccg accccatccc caaaaacaaa atgccgtctg aaaaaatttc agacggcatt
     8581 gttttgccat atcggtcagg ctttcaattt cgcatcggca tcgcgcaacg cggtacgcag
     8641 accttcctcg ataacgggat ggtagaacgg catatccagc atttgcggaa cggtcatctt
     8701 catttgatgc gcccatgcca gcaagtgcgc caaatgttcg gcggcagggc ctacgatttc
     8761 cgcgccgata aagcggccgg tggctttttc ggcatacagg cgcatatggc ctttgttcac
     8821 cagcatcacg cggctgcggc cttggttttt gaacgatact tcgccgatga caaattcgtc
     8881 ggcttggtat tgcgcggcaa cctgcgcgta tttcagaccg acaaagccga tttgcggact
     8941 ggtaaacacc acgccgatgg tgctgcgccg caaaccgccg ccgatattcg ggtagcggcc
     9001 cgcgttatcg ccggcaatct tgccttggtc ggcagcttca tgcagcagag gcagttggtt
     9061 ggacgcgtcg cccgcaataa agatatgcgg aatgctggtc tgcatggtca gtgggtcggc
     9121 aacgggtacg ccgcgcgcgt ctttttcgat attgatgttt tccaaaccga tattgtcaac
     9181 gttcggacgg cggcccacgg ctgccagcat atattcggca acaaatacgc ctttttcgcc
     9241 gtcctgctcc caatggactt ctacattgcc gtctgcatct agtttgacct cggttttagc
     9301 atccagatgc agtttcaatt cttcgccgaa cacggctttc gcctcgtctg aaacgacggg
     9361 gtcggaaatg ccgccgatga ttccgcccaa accgaaaatt tcaactttca cgcccaaacg
     9421 gtgcaatgcc tgacccagtt ccaaaccgat aacacccggc ccgaacacgg caacgcgctt
     9481 aggcagcgta tcccatgaga aaacgtcatc gttgataatc aaacgattgc ccaaagactg
     9541 ccattgcggc aggatgacgg gacgcgaacc ggtagcaatc acgaaacttt ttgccgtaat
     9601 ttgagtatgc tcgtcgattt ggacggtatg ctcgtcgata aatttagccg aacccatgat
     9661 gcgcttgtcg gcaggccact cttccacatc ggcaacgaca aagccgacaa aacggtcacg
     9721 ctcggattta acgcgctgca tgacctcttc accgttgacg acgatgctgt ctttgtccaa
     9781 atgcacgccg aacgggtcgg tatgcaatgc gtggtggcgc gcttctgcgg cggcaatcaa
     9841 gagtttggaa ggcatacaac ccacgcgcgc gcaggttgtg ccgaacacat tgttttcaat
     9901 caggtaaaca ttatccgaat gtaaacgggc attgcgaaac gcacccatac cggcagtacc
     9961 gccgccgatt acgacgacat ccgcttgaat ttttttcata atctttgtcc ttccgttttc
    10021 gtctgaaaca ttgccgacac agaacatatc ggtttcagac ggcatttaaa tattttccca
    10081 atcaaaaaca tcattcagat aaataaaaac aaaatttcga ttgagtgcaa caatatccaa
    10141 attctcttat aaatatagag ttattcggat cggcagtgta gaaccgcccg aataactcta
    10201 tccggtatat cagacagttt aatcaaaccg ccttaagcaa acagctatca gtttttagcc
    10261 aagtaagctt ccaaatcttc gctgccgccg atgtatttgc cgccgatgaa gacttgaggg
    10321 gcagtcatct tgccggtaat ggcgcgaacg gaagtaacgg ttgcatcttt gcccaatacg
    10381 atttcttcgt aagacaaacc tttgtcttgc aaagcttgtt tggctttggc gcagaattgg
    10441 caacctggtt tagtgaaaat tgccacagac tcttgagctt tccaatcagg agcaacgaat
    10501 ttcagcatag tatctgcatc ggatactttg aacggatcgc ctggttcttc aggctcgatg
    10561 aacatttttt caaccacgcc gtcgttaacc agcatggagt aacgccaaga gcgtttaccg
    10621 aagcccaagt cttctttacc gaccagcata cccatacctt cggtaaattc gccgttgcca
    10681 tcaggaatca tgtagatgtt gtcggattct tcttcggcag cccaagcgtt cattacgaac
    10741 gtatcgttta cagatacgca gtagattgcg tcaacgccgt tttctttgaa cgcgccgaac
    10801 aattcgttgt aacgcggcag gtgtgaagaa gaacaagtcg gggtaaatgc accgggcagg
    10861 gagaatacga ctactttttt gcctttgaac aaatcatcgg tagacacatc tttccaagtg
    10921 tcgccgacgc gggtgcggaa tactacggaa ggtacttttt gaccggtacg atcttgcaaa
    10981 gccattttaa gctccttaat agattggttt gagaaataat tgtgaatcgc tgggcattct
    11041 accccatgca aaatgatttg tataatttat agttcaaata atataaatta tttaaaacta
    11101 tcaaacacaa ctccgatttg cctgtttccc acatataaag ccgaattaga aaaaaacaag
    11161 ctgcaatgaa aagattttcc ggcaactgcg cccttgcgcc gcaaatcagg acaaaatacc
    11221 gtctgaaagg ctttcagacg gtatttattc atacggtctc ggcttatttc gccaattcgg
    11281 cacgcaattt gtgggttacg ttcatcatca cttggagttg ttccagagtt tctttccagc
    11341 cgcgtgtttt caggccgcag tccgggttaa cccacagacg ttcaaccggt acaacctcga
    11401 tggctttgcg caacaggtgc tccacttcgg cttctgtcgg tacgcgcggg ctgtggatgt
    11461 cgtaaacccc cgggccgatg tcgttcgggt atttgaattc gccgaacgcg gtcaagagtt
    11521 ccatgtcgga acgtgaagtc tcgatggtga tcacgtccgc atccattgca gcaatcgcag
    11581 gcaggatatc gttgaactcg gagtagcaca tatgagtgtg gatttgtgtg ctgtcttcgc
    11641 aaccggcaga ggacaggcgg aaggattcgc ccgcccagtt caggtaggca tcccaatcgg
    11701 cgcgtttcag cggcaagcct tcgcggatgg caggttcgtc aatttggatg actttgatgc
    11761 ctgctttttc cagatccaat acttcgtcgt tcagagccag tgcgatttgt ttgcacacgg
    11821 tagagcgagg aatatcgttg cggacgaaag accattgcag aatggttaca gggccggtca
    11881 acataccttt catcggacgt ttggtcaggc tttgagcgta agtagaccaa gcgacagtca
    11941 tggcttcagg acggcttacg tcaccgaaga taatcggtgg tttaacacaa cgtgagccgt
    12001 agctttgtac ccagccgtat tgggtgaatg caaaaccgct caacaattcg ccgaagtatt
    12061 cgaccatgtc gttacgctcg gcttcgccgt gtaccagtac gtccaaatcc agtttttctt
    12121 gttcttcaac caccaaggcg atttcttttt tcatcgcggc ttcgtaatcg gcggcagaca
    12181 gttcgccttt tttgaaggct gcgcgtgctt ggcggatttc ggtagtttgc gggaaagaac
    12241 cgatgttggt cgtcggcagc agaggcaggt tcaaccatgc ttgttgcgct ttgatacggt
    12301 cggcaaatgg agatttgcgt tggtctgcgt tggcaggcaa atcggccagg cgtttggcaa
    12361 cgtctgcacg gtggatttcg ctgctgttgg cgcgtgaatc ggcagcagct tggctggcgg
    12421 ccagttcttc ggcaacggaa tcgcgacctt cgttcaatgc ggctttcaga acgcgcaatt
    12481 cttgggtttt ttgcagggta aatgccaacc aagagtacag gtccggtttg ttggctttca
    12541 gtttttcttc aactgacaag tcaaatggag tgtgcagcag agagcaagag ctggaaatcc
    12601 acaaacggtc gcccagtttg gcttgcagag gctcaacagt ttccaaaact ttgttcaggt
    12661 tggcgcgcca gatgttgcgg ccgtcgatga tgcctgcaga cagaactttg tcgtagtcgg
    12721 caaatgcgtc cagttgctcg ggagcgcgta ccaagtcgat gtgcaggccg tcaacaggca
    12781 gggatttcaa caatgcggcg tgttcggcaa cagaaccgaa gtaagtgctc agcaggattt
    12841 tggcacttac tttgctcaaa gtagcgtaaa cgtctttgta ggcttctacc cattctttag
    12901 gcagatcgac agtcaaagca ggctcgtcga tttgaatcca ttctgcaccg gcttcaacca
    12961 aagcgtttag gatttcaacg taaacaggca gcagtttttg caacaggctc aggcggttga
    13021 attcgactgt gcctttttct ttacccaccc acaggaaagt caacggacct acaacggtcg
    13081 gtttggcttt cagaccgagg gcttgggctt cttgcagttg ttgaacatag tgtttggcat
    13141 tggctttgaa ttcggtatcg gcgtggaatt caggcaccaa gtagtggtag ttggtgtcga
    13201 accatttggt catttcgata gcgaattggt ctttgttgcc gcgcgccagt tggaagaatt
    13261 gttccaaaga caggttttgg ctgtcgaaac cgaagcgggc gggaatcgcg ccggtggcga
    13321 cttgcaggtc gaggatgtgg tcgtagaaag tgaaatcgcc tacggcaacg aaatcggcgt
    13381 tggcagcggc ctggtgtttc cagtttttct cgcgcaagtc tttagcaaca gccagcaatt
    13441 cttgctcgct gatttctttg cgccagtatt tttcttgtgc gaatttcaat tcgcggaagg
    13501 cgccgacacg cgggaagcct gagaaatgta atgttgtcat gttgaactct ccagttggat
    13561 tttgtaagga ccggttcgat ccaaatcggc cggtattgta aatcagaatg gctcggatgg
    13621 ggcggtgttt tgctttttag acaccttaga tgccgtctga aactgtttga tacggcttta
    13681 agggcgcacg cctaaaatat ggcagatggc gtaagtcagc tcgctgcggt taagcgtata
    13741 gaagtggaaa tctttcacgc cttcgcggga caggactttg accatatcga tggcgatact
    13801 tgccgccacc agattgcgcg taccttggtc gtcgtccaaa ccttcataca tttgcgacag
    13861 ccagcttggg attttgacgt tggttacttg cgccattttg ccgagctgct tgaagttggt
    13921 aacaggcaaa ataccgggga cgatttccac atcgataccc aacatcacgc agcggtcgcg
    13981 gaagcgcagg tagcgttcca catcgaagaa gaattgggtg atgacgtggt tcgcgcccgc
    14041 atcgattttg cgtttcagat tgatcaagtc ggcttgagcg gatttggctt ccgggtgtac
    14101 ctcaggatag gccgctacgg aaatgtcgaa gtcggcaacg gagcgcaaca gtttgaccaa
    14161 atcttcggca tagaaaggtt ttttctcgta gccgggcagc tcgtcgccgc gcagggcgac
    14221 aatgcggcgg atgccgctgt cccaatagtc tttggcgatt tggcgcaatt cgtcgggaga
    14281 agcgtcaata ccggtcaggt gcggggcggc ttccaagccg gtttcctgtt tgatgcgttt
    14341 gacgatgccg tgtgtgcggt cgcgctcgcc tgagtttgca ccgtaagtta cggaaacaaa
    14401 tttcgggtgc aaggtttgca ggcgatggat ggaatcccac agcatggttt ccatttgttc
    14461 gtttttcggc gggaaaaatt cgaatgaaac gttgatgtcg cctttcaaat cggaaaggct
    14521 gttatttaac gcattgattt cttttgcgta attcatggct gcgtaccttt tattatcttt
    14581 tatatgatgt ttcaggcaac ataataaagt tgcgccaaac atgagtcaat ttcaaaattt
    14641 tcagatttat catgaaaatt tctaatatat tacaaaaata gttaaatttc cttgtacagc
    14701 ccttctaaac tatgctagag tttgttatgt tataacactg aaagcaaggc aatatatgaa
    14761 accgaatatt catcccgaca attaccgaac cgtccttttt ttcgatagca gcgccaatga
    14821 aggctggtta atccgctcct gtgccgaaac acacggaaaa acgatggttt ggacagacgg
    14881 caaagaatat ccgctgtttt cgctggatac ttcttccgca tcccatcccg tctatactgg
    14941 caaacagcgc aacgtcaaca ccgaaggccg tgccagcaaa ttcaaccaac gtttccaatc
    15001 cgtaatgtca tcgtttagaa aggacaaata atgcaggttc tgtcttcact caaaaccgcc
    15061 aaacaacgcc accgcgactg ccaaatcgtc aggcgcaggg gcaaagttta cgtcatctgc
    15121 aaaagcaatc cgcgttttaa agcgcgccaa cgctgacccc ctgcccttcc tgcttcggtt
    15181 gtaaatcccc tcctaccgca agcccttttc aaaaaatgcc gtctgaaaca gaaaaatgcg
    15241 tttcagacgg cattttttcc gtcaatacga atccggaatg tgtttgaaat acagcataaa
    15301 cagataccaa aacagcgtcg cggcggccgc accgagcagc acccgggcac tgatttcggc
    15361 aacttcgcgc agggcgcgtt tctgcctgcg gctgaagagg cggttcataa tcagcgcggc
    15421 aagtgcgaaa aagaaaaaaa tacggaaaag tctgcctatc atgtcgggaa gcgaaaagta
    15481 tggttcgggc gcggcggcat ggggaaggat gtttcagcgc gtcaggctgc ttgtccgacc
    15541 gtgtcaaaaa gtcatgccgt ttgcgatata ataacgcttt ttgccgtatt tgttggaaca
    15601 ggatatgagt caaaatgcct cggtgggcat tgtaacgccc caaaaaattc cgtttgaaat
    15661 gccgctggtt ttggaaaacg gtaaaacttt gccgcgtttc gatctgatga ttgaaaccta
    15721 cggcgagctg aatgccgaaa aaaataatgc ggttttaatc tgtcatgcgc tgtcaggcaa
    15781 ccatcatgtt gcgggcaggc attcggcgga ggataaatat acgggctggt gggacaatat
    15841 ggtaggaccc ggcaaaccga ttgatacgga acgttttttc gtggtcggtt tgaacaatct
    15901 gggcggctgt gacggcagca gcggaccttt gtcgatcaat cctgaaacgg gtagggaata
    15961 cggcgcggat tttccggtgg ttacggtgaa ggactgggta aaatcacaag ccgcgcttgc
    16021 cgactatctc ggcatcgggc aatgggcggc ggttgtcggc ggcagtttgg gcggtatgca
    16081 ggctttgcag tgggcgattt cctatcccga acgcgtgcgc catgccttag tgattgcgtc
    16141 tgcgccgaaa ctgtccacgc aaaatatcgc gttcaacgat gtggcgcgtc aggcgatttt
    16201 gaccgacccc gatttcaacg aaggacatta ccgcagccat aataccgttc ctgcacgggg
    16261 cttgcggatt gcccgcatga tggggcacat tacctatctt gccgaagacg gtttgggcaa
    16321 aaaattcgga cgcgatttgc gttccaacgg ctatcaatac ggttatggcg ttgaatttga
    16381 agtagaatcc tatctgcgct atcagggcga caaattcgtc gggcggtttg atgccaacac
    16441 ctatttgctg atgaccaaag ctttggacta tttcgatccg gcggcggatt tcggcaacag
    16501 cctgacccgc gccgtgcagg atgtgcaggc aaaattcttt gtcgccagct tcagcaccga
    16561 ttggcgtttc gcgcccgaac gttcgcacga actggtcaag gccctgattg ccgcccaaaa
    16621 atccgtgcag tatatcgaag tcaaatccgc acacgggcac gatgcctttt taatggaaga
    16681 cgaagcctat atgcgtgcgg tcgccgccta tatgaacaac gtttataagg aatgtcagca
    16741 atgaacctgc gcgatgattt gcaactgatt tacgaccgga tacccgaagg cagccgcgtc
    16801 ttggacttgg gctgcggcga cggcgaactg cttgccgcat tggtcgaaca caaaaaatgc
    16861 agcggctacg gcatcgaaat cgacaccgac agcgtgattg ccgcgatgtc gcgcggcgtg
    16921 aatgttatcc aagccgattt ggaagaaggt ttaaccgcat tcaacgatca aagttttgat
    16981 gtgattgtgt tgagccaaac catccaagcg atgcagaata ccgaaaaaat cctgcgctgc
    17041 ctgatgcgcg ttgccaaaca ggcgattgtc agcttcccga atttcggcta ctggcgcaac
    17101 cgcgtccaaa tcgcactcgg cggacatatg ccggtttccg aacgtatgcc ctaccattgg
    17161 tacgacacgc ccaatatcca ttggtgcacg ctcaaagact ttgatttgtt gtgcgccaaa
    17221 aacaacatcc gcgtcctcga acgcgccgtg atgacgggca acagacaggt caaacatttc
    17281 cccaaccttt tgggcagcct tgcgttttac cgcgtcggct aagacaggtt gagaaccttg
    17341 tcggcaataa caggttcttc ggttctatta acaacaggcc gtctgaaaaa tgaaacggta
    17401 ggttttcaga cggcctcttt aatactggaa acaatagaat gaaaaacaaa acctcatcac
    17461 ttctcttatg gcttgccgca atgatgctga ccgcgtgttc cccgagcaaa gaagataaaa
    17521 cgaaagaaaa cggcgcatcc gccgcctcgt ccacggcatc cgccgcttcg tcttccgcgc
    17581 cccaaaccga tttgcaaccg gccgcatccg cccctgataa cgtcaagcag gcagaaagcg
    17641 tgccgccgtc aaattgcacc gacctgcacc ccgccaccgg cattgacgat ctcatgcagc
    17701 aaatcgccga acacattgac tcggactgtc tgtttgccct ttcccatcac gaactggaaa
    17761 cccgtttcgg cttacccggc ggcggctatg acaacataca gcggctgctg tttcccgaca
    17821 tccgccctga agatcccgac taccatcaga aaatcatact ggcaattgaa gacttgcgtt
    17881 acggaaagcg cacgatcagc cggcaggcac aagatgcctt gatggaacag gaacgccgcc
    17941 tccgagaagc gacgctgttg ctgatacagg gcagtcaaga aacccgcgga caaggcgagg
    18001 agccgaaacg cacgcgttat tttgaagttt cggcaacccc tgcctattcg agccggcaca
    18061 acaacggact tggcggcaat ttccaataca tcggccaatt gcccggctat ctgaaaatac
    18121 acggagaaat gcttgaaaac caatcactct tccggctgtc caaccgtgaa cgcaatcccg
    18181 acaaaccgtt tttagacatc cattttgacg aaaatggcaa aatcacgcgt attgtcgttt
    18241 acgaaaaaaa catctacttc aatccaaact tggggcgaag ataaaaaaat gccgtctgaa
    18301 acgttttcag acggcatttt tcaatgcaac aaatcaagcg cgtttgcgga attcgccggt
    18361 gcgggtatcg atttcgattt tgtcgccgtt ttcgatgtaa gacatcactt ggatttcggt
    18421 gccgccgacc aggcgcgcgg ttttcatcac tttgccggaa gtatcgcctt tgacggcagg
    18481 ctcggtatac tcgacttcgc gtacgatgat ggtgggcagt tctacggaga tggggttgcc
    18541 ttcgtagaag gtaacttcgc attggtcttc catgccgtca acgatgaatt tcaacgcgtc
    18601 gccgatgttg tcggcttcga tttcgtattg gttgaattct tcgtccataa agacgtacat
    18661 cggatcggca aagtagctgt acgtacagtt tttgcgggac aggatgacca cgtcgaattt
    18721 gtcgtcggct ttgtaaatgg tttcggaagc cgcgccggtc agcaggtttt tcagtttcat
    18781 gctgactttg gcggaagagc ggccgccttt gatgtattcg gttttttgaa cgaccatagg
    18841 atcgttgccg accataaata cattgccggc gcgcagttct tgtgctgttt tcattgtgat
    18901 tttccaatca aatcggttgt cgtaaaacgc actattctag cgtatttttt gatgctttga
    18961 aacaaaggcg gcgagttttt cggatgcgga aggctgcccg aaaagataac ggctccaatc
    19021 ctccgcgcct tgccgccagc cgttttgatg ttgttgcagg atttgccaac attcgaggcg
    19081 ttgcgtggcg gataaagcct ctccgccgtt gaggtcgtct gaaaggcggc ggtgtaccga
    19141 tgcggtttcg ggcgagtaaa atccatgcgc cttatcccaa aaggcgtgga gtttatcgag
    19201 atggacattc tcgtcttgcg ggtagatgtg ccaaaagaag ggtttgccgg caagctgggc
    19261 gcgcacgaaa ctgtcttcgc cgcgtatcac ggcgcagtcg gcgaggtgca gcagtttgtc
    19321 gaagtcctgt tgcggcacga aagggatttt gacgaggcgg acggatgccg tctgaaaaac
    19381 atcgccgtcg ttttgcaggg catcttgcgg aataacgccg ctttgtttga ggctgtcgat
    19441 gatttgcgtc cccgccagca acagtgtcat cgggctgcct gcctgtcgcc acatttccag
    19501 ccactttgcc caaacatcgc tccgatagcc gaaaagcagc cattcggggg cgtttttttc
    19561 gggaagcatc agccgctctc gcaaggcttc ggtatcgaaa cggacggcat ttcggtaatc
    19621 gcgttcgcgt atcaacccgc cgcttttttc gctgaaaccc ataaaccaaa aatatttttg
    19681 aacactctcc tgcagcgaag gcatcagatg cagcctttca ttgctttctt ccgcgctcaa
    19741 atattcccaa ttcagccaaa gcggcttgtg tcggcggatg atgtgcagca cattttcggg
    19801 caggtcgcag gcaaaagttt cgataacgat atcgggaaca agggcagtat cgatatccgc
    19861 cgcatcggaa tgccaagtgc ggacatgaat atcctgatga acgcagggaa catcgggcaa
    19921 atcagggcaa agcgcacgca aggcggacac atcgtccgtc cacaaatgca cctgccaacc
    19981 gagttcgcgg tgcaaaacac gggcgagccg ccacgaaacg ccgatgtcgc cgaaattgtc
    20041 gatgaccttg caaaaaatcc aacagacaaa aggaggagta ttcatagaaa taacggaaac
    20101 aagctaaaac gcgccgaaat agtggaacaa atacacaatc agcaaaataa tcggaataaa
    20161 cagcaacata gtttgacgtt tcaaatcaaa ctcttgtttc aaatgatgct tgatggtgtc
    20221 gaaaaggacg aatttaaaca aaaacgtcgc ttcgcaggca aggatgatgc cgttgatcag
    20281 atgctggagt ttgtcttcgg gcggattggc ggcgaaaacg gcaagcgtcg ccaacgggat
    20341 gaggcagacg gcaagccaac ggacaagcag gtttcgagac attgcaaggc tttcaaaaaa
    20401 agcaaaacgc cattatcgcc ccaagcgcac gccttgtcta acggacgcac cggagatgcc
    20461 gtctgaagcc ttgccgcagg aaaacaccgc accgccgaac ctttaaatac gcccgagacg
    20521 ggcgttcccc gaaaaatcgg acgctgccgc cgatgcctga ggacaaggcg gcagcaggca
    20581 cgggcatatt gaaaacccgg cgcgtcggtt tgaa
//
LOCUS       DAXIFD010000012        20504 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.012, whole genome shotgun sequence.
ACCESSION   DAXIFD010000012 DAXIFD010000000
VERSION     DAXIFD010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20504
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.012"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..105
                     /locus_tag="ACFOCN_000364"
     CDS             <1..105
                     /locus_tag="ACFOCN_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
                     /protein_id="HFC6969574.1"
                     /translation="SEMVIKESLKDGHKIYKFEFCEIVDNCNFDDVFV"
     gene            89..484
                     /locus_tag="ACFOCN_000365"
     CDS             89..484
                     /locus_tag="ACFOCN_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6969575.1"
                     /translation="MMYSFEANANAVKISETVSVDTGQGAKIHKFVPKNSKTYSSDLI
                     KTVDLTHIPTGAKARINAKITASISRAGVLAGGGKLARLGAKFSTRAVPYVGTALLAH
                     DVYETFKEDIQARGYQYDTETDKFVKVSG"
     gene            complement(983..1058)
                     /locus_tag="ACFOCN_000366"
     tRNA            complement(983..1058)
                     /locus_tag="ACFOCN_000366"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1023..1025),aa:Asn,seq:gtt)
     gene            complement(1151..1510)
                     /locus_tag="ACFOCN_000367"
     CDS             complement(1151..1510)
                     /locus_tag="ACFOCN_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HFC6969576.1"
                     /translation="MQQLLISILEDLNNTSTDIIASAVISTDGLPMATMLPSHLNSDR
                     VGAISATLLALGSRSVQELACGELEQVMIKGKSGYILLSQAGKDAVLVLVAKETGRLG
                     LILLDAKRAARHIAEAI"
     gene            complement(1533..2177)
                     /locus_tag="ACFOCN_000368"
     CDS             complement(1533..2177)
                     /locus_tag="ACFOCN_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HFC6969577.1"
                     /translation="MESTLSLQANLYPRLTPAGAFYAVSSDAPSAGKTLLHSLLKADA
                     DEMVSSEKLLTWADTADIDTALNLLYRLQKLEFLYGDENGHSDGINLSDEQLPLLMEQ
                     LSGSGKALLVDRNGLYLANANFHHEAAEELGLLAAEVAQMEKKYRLLIKNNLYINNNA
                     WGVCDPSGQSELTFFPLYIGSTKFILVIGGIPDLGKEAFVTLVRILYRRYSNRV"
     gene            complement(2179..2715)
                     /locus_tag="ACFOCN_000369"
     CDS             complement(2179..2715)
                     /locus_tag="ACFOCN_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HFC6969578.1"
                     /translation="MRENKIIFTGPVGVGKTTAIAAISDEALVQTDASASDMTLDRKR
                     NTTVAMDYGAISLDEDTKVHLYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKD
                     LEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAKHNLNVPVFEIDARKEDD
                     VKQLVSAMLFSIDPGLEV"
     gene            complement(2727..3824)
                     /locus_tag="ACFOCN_000370"
     CDS             complement(2727..3824)
                     /locus_tag="ACFOCN_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6969579.1"
                     /translation="MEVQLPKIKTVRVMLAGMTAQQESVFKMAFKMHNTTRYETVSPS
                     DGSAVPDLVLADTDAEGGFELWKELAERYKDIPVAVCSEKVPDSEVPYLPKPIRFETL
                     FPMLRKLLQGENVYGKSFIAPADRSAKNNGNVQRTVTIRQFNPNKGLLGALRFAEKNR
                     QDIAILHGNKPVLIVFPSIQRVLLTESVQKLEELCKDENLQVSCKTVPDNPQWREKAK
                     VGIMSCMWQFSIWTAQGRLIYPISPDTPFTLKSWPNLTRLASVPGSIRLSAFLTKASV
                     NLNVLYKVMPLNLNDILNYLAATYTTGFLSVDLKTVSQQAYSDMADKINIGADSASDS
                     EMMKKAEKITTPSQSQSRGLLQRLMKKLLGS"
     gene            complement(3827..5263)
                     /locus_tag="ACFOCN_000371"
     CDS             complement(3827..5263)
                     /locus_tag="ACFOCN_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6969580.1"
                     /translation="MENSLIIGLALAVLLMLLVMRAKQGKKTPKRKSQGVGNTQGQTP
                     GSNDSDWVDQIGQSVSDGTQPDWSWNESAETASAAVSAQEVDPLTEYQVYKQFGYQGK
                     AAESLAAYLDGIPDGEAKPENLIRELLDINLEVGDVDVLADNLQKYGKLIPSELLAKY
                     IEQALQRDSNHLRIRVLAEEGLGWGTQEIEKRAEGGSATAASASPPPDAGGKAYEAEE
                     IKRIPIVRGKKDVSGISQEEIGAIAGLVRADQGAKILKDKVSYETASKQYDRAIQTSE
                     KPANLIIDALKLDYQHADIDRFAGHLWKLYQTLGNYGRQVKERMLGWGYSLGYHEVFD
                     DLEKGPNDRQIKDIGMGHGYLPKNIQKFKSQHRDLVLQDSSLINTGSSPADDAVKEVE
                     SLLMYGQIEAAMDVLEQAVLKYPDESQLYITLIDIYERTEDWDRLGQFLRVLRERADR
                     LPEEVVMLMSRLLQRMNQNIKKIKRYGK"
     gene            complement(5483..6265)
                     /gene="bioC"
                     /locus_tag="ACFOCN_000372"
     CDS             complement(5483..6265)
                     /gene="bioC"
                     /locus_tag="ACFOCN_000372"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HFC6969581.1"
                     /translation="MESLTAINKSRIRQAFQKALNDYDRHALIQQKMTINLMAHLQDY
                     LPDMPLENVLELGCGSGMLSALLQKQISANYWLFNDLCDVQPQLAEKLPQSFDFYCGD
                     AENFPFQRQFDLIASASAVQWFHQPDAFIAHCKTGLKANGLLAVATFGKDNLKEVRQI
                     TNIGLNYPTLSQWQTWLAKDFELLWCEDFKVILDFDTPLDVLKHLKYTGVTATNQKNW
                     TRKNLNGFIGDYLSAFSMPSGKVHLTYHPLFFIARYSAAGRQ"
     gene            complement(6253..6900)
                     /locus_tag="ACFOCN_000373"
     CDS             complement(6253..6900)
                     /locus_tag="ACFOCN_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HFC6969582.1"
                     /translation="MKTKFYNHQGGHLILYFAGWGTPPDAVNHLILPENHDLLICYDY
                     QDLNLDFDFSAYRHIRLVAWSMGVWAAERALQGIRLKSATAVNGTGLPCDDNFGIPCA
                     VFKGTLENLTENTRLKFERRMCGDKVSFEDYQQFPARPFDEIHQELTALFEMIGQDRR
                     ADLIRWTNALVGSGDKIFMPANQHRYWTPRCTVREIDGGHYLFSRFTHWSALWNH"
     gene            complement(6910..8052)
                     /gene="bioF"
                     /locus_tag="ACFOCN_000374"
     CDS             complement(6910..8052)
                     /gene="bioF"
                     /locus_tag="ACFOCN_000374"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HFC6969583.1"
                     /translation="MNVFKQQLEQLGAQNQYRSIPDLIHQGRYITRENRKMLNMSSND
                     YLGLASDENLRRSFLQQYGGNFPSFTSSSSRLLTGNFPIYTDLEQLVAQRFQRESALL
                     FNSGYHANLGILPALTTTKSLILADKFVHASMIDGIRLSRCAFFRYRHNDYEHLKNLL
                     EKNVGKFDRTFIVTESVFSMDGDVADLKQLVQLKKQFPNTYLYVDEAHAIGVYGQNGL
                     GIAERDNLIAEIDLLVGTFGKALASVGAYAVCNQVLKECLINQMRPLIFSTALPPFNV
                     AWTYFIFERLPQFSKERSHLEQLSAFLRREVAHRTQIMPSQTCIVPYILGGNEATLAK
                     AEYLQRQGYYCLPIRPPTVPKGTSRIRLSLTADMTMDEVRQFAVCL"
     gene            8275..9351
                     /locus_tag="ACFOCN_000375"
     CDS             8275..9351
                     /locus_tag="ACFOCN_000375"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HFC6969584.1"
                     /translation="MICRKPIGHTPYFDMNKTICRTAALLISGFSYANTVIPDVSPVA
                     QGQHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKS
                     IQKERGDGVKTIAAGPDNPLGPVFVRLGDPKLGLGIHGTNAPASVPGVRSHGCVRMKS
                     PDALEFAKTIASGSPASVIYQMAGLNEDADRNLWLAAFRDPYGKNNLDIASLKKSIAQ
                     WAKTQGKTIAPEKVDAVLKDRTGSAVCLTCGKNGKMKMPLKSLAWIQGSSSYSQAEVI
                     EQTEETNSAEISETRTPEVPDVHTPEAQPHLNTQSDGTPTAYTEPAADSSPQVETPDQ
                     AASEPVDVLFSIDVIRQGNLRLGN"
     gene            complement(9558..11024)
                     /locus_tag="ACFOCN_000376"
     CDS             complement(9558..11024)
                     /locus_tag="ACFOCN_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6969585.1"
                     /translation="MMKLGFKPIPLAIAAVLCALVLALPVPDGVKPQAWTLLAMFVGV
                     IAAIIGKAMPLGALSIIAVGLVAVTGVTADKPGAAMSDALSAFANPLIWLIAIAVMIS
                     RGLLKTGLGMRIGYLFIAVFGRKTLGIGYSLALSELLLAPVTPSNTARGGGIIHPIMQ
                     SIAGSYGSNPAKGTEGKMGKYLALVNYHSNPISSAMFITATAPNPLIVNLIAENLGSS
                     FRLSWGAWAWAMAVPGVIAFFVMPLILYFLYPPEIKETPNAVQFAKDRLREMGKMSAD
                     EIIMAVIFGILLLLWADVPALITGNHAFSINATATAFIGLSLLLLSGVLTWDDVLKEK
                     SAWDTIIWFGALIMMAAFLNKLGLIKWFSGVLAESVGGLGVSGTAAGVILVLAYMYAH
                     YMFASTTAHITAMFGAFFAAAVSLNAPAMPTALMMAAASNIMMTLTHYATGTSPVIFG
                     SGYTTMGEWWKAGFIMSVVNFLIFFVIGSIWWKVLGYW"
     gene            complement(11222..12145)
                     /gene="speB"
                     /locus_tag="ACFOCN_000377"
     CDS             complement(11222..12145)
                     /gene="speB"
                     /locus_tag="ACFOCN_000377"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HFC6969586.1"
                     /translation="MQYSTLAGQTDNSLVSNNFGFLRLPLNFMPYESHADWVITGVPY
                     DMAVSGRSGARFGPEAIRRASVNLAWEHRRFPWTFDVRERLNIIDCGDLVFSFGDSRD
                     FVEKMEAHAGKLLSSGKRCLSLGGDHFITLPLLRAHARYFGKLALIHFDAHTDTYDNG
                     SEYDHGTMFYTAPKEGLIDPSRSVQIGIRTEHSKKLPFTVLTAPQVNEDSVEETVRKI
                     KETVGNMPVYLTFDIDCLDPSFAPGTGTPVCGGLSSDRALKILRGLTDLDIVGMDVVE
                     VAPSYDQSDITALAGATIALEMLYLQGAKKD"
     gene            complement(12244..14136)
                     /gene="speA"
                     /locus_tag="ACFOCN_000378"
     CDS             complement(12244..14136)
                     /gene="speA"
                     /locus_tag="ACFOCN_000378"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HFC6969587.1"
                     /translation="MPILTIREVCNINHWGIGYYDVDDSGEIIVRPNPSQHNQTVSLQ
                     KLTEAVQQKHQARLPVLFCFPQILEHRLRDINRAFQTAREECGYKGGYCLVYPIKVNQ
                     HRRVIESLMSSGQPHGLEAGSKAELMAVLAHAGTRQTLIVCNGYKDREYIRFALMGEK
                     LGHQVYLVIEKLSEIQMVLEEAEKLGIKPRLGVRARLASQGSGKWQSSGGEKSKFGLS
                     ASQVLQLVDILKQKNRLDCLQLLHFHLGSQLGNIRDVATGVHESARFYVELHKLGVNI
                     RCFDVGGGLGVDYEGNRTQSDCSVNYSLNEYASTVVWGISQACLEHGLPHPTIITESG
                     RGITAHHAVLVANVIGVERYKPRRLDAPSPEAPRVLHSMWETWTDISASREKRSLRSW
                     IHEGQFDLADVHNQYNVGLLSLAQRAWAEQLYLNICHEVGELFNEKHRSHRTIIDELQ
                     ERFADKLYVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDH
                     YIDGDGIAGTMPMPDYPEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVVVGEDGQ
                     FTVIDYDEGNTVADMLEYVYQDPKELMKRYREQIEHSDLPASQAMSFLKELEAGLNGY
                     TYLEDE"
     gene            complement(14303..14587)
                     /locus_tag="ACFOCN_000379"
     CDS             complement(14303..14587)
                     /locus_tag="ACFOCN_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6969588.1"
                     /translation="MKKLLLAAVVSLSAATAFASDSAERQIYSDPNFEQNRVKAVKML
                     EQRGYQVHDVDADDHWGKPVLEVEAYKDGREYDIVLSYPDLKIIKEQLDR"
     gene            complement(14738..16546)
                     /gene="aspS"
                     /locus_tag="ACFOCN_000380"
     CDS             complement(14738..16546)
                     /gene="aspS"
                     /locus_tag="ACFOCN_000380"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HFC6969589.1"
                     /translation="MRTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGI
                     VQVVIDPDTPEAFAAADSARNEYVLSITGRVRNRPEGTTNDKMISGKIEILAKEIEVL
                     NAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFID
                     IETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFR
                     DEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALNVDLGDFPRMPYAEA
                     MFYYGSDKPDMRINLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAKFSRKE
                     IDEYTKFVGIYGAKGLAYIKVNDVGNLSNGEDSGLQSPIVKFLSENALKEIIARTGAE
                     NGDIIFFGADKAKVVNEAIGALRIKVGLEHGAENGYFTDEWKPLWVVDFPMFEYDEEA
                     DRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKV
                     FAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKT
                     QRAQCLLTNAPNSVDDKQLRELSLRLRQKAAETKEA"
     gene            complement(16604..17305)
                     /locus_tag="ACFOCN_000381"
     CDS             complement(16604..17305)
                     /locus_tag="ACFOCN_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HFC6969590.1"
                     /translation="MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASD
                     QLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRI
                     PVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQSGIWTIAFVSGQVSNAVKAALPK
                     DGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTL
                     AGPMPSEKADLPEQQ"
     gene            complement(17448..18575)
                     /locus_tag="ACFOCN_000382"
                     /pseudo
     CDS             complement(17448..18575)
                     /locus_tag="ACFOCN_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236077.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
     gene            complement(18756..19019)
                     /gene="rpsT"
                     /locus_tag="ACFOCN_000383"
     CDS             complement(18756..19019)
                     /gene="rpsT"
                     /locus_tag="ACFOCN_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HFC6969591.1"
                     /translation="MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDK
                     AAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA"
     gene            19322..20464
                     /locus_tag="ACFOCN_000384"
     CDS             19322..20464
                     /locus_tag="ACFOCN_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HFC6969592.1"
                     /translation="MKKSVLAVLAALSLAACGGSEKNAVQPQADAASAANAEAAATDT
                     LNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETLEAKMLTGKSGYDLVVPGIAFL
                     PRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPGNQYAVPYFSGVNTIAITAKGK
                     ELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSEMFPILLNYLGKDPKGSNPEDL
                     KAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNGGDLNLAKARSEEVKNNVGIEV
                     LTPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEIAAKNGIAVTFAPASKPAREKM
                     PAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSLWQKIKVGTN"
BASE COUNT         5324 a         5249 c         4765 g         5166 t
ORIGIN      
        1 tcagaaatgg taattaaaga atccctgaaa gatggtcata aaatatacaa atttgaattt
       61 tgcgaaattg tcgataattg caattttgat gatgtattcg tttgaagcga atgcaaatgc
      121 agtaaaaata tctgaaactg tttcagttga taccggacaa ggtgcgaaaa ttcataagtt
      181 tgtacctaaa aatagtaaaa cttattcatc tgatttaata aaaacggtag atttaacaca
      241 catccctacg ggcgcaaaag cccgaatcaa cgccaaaata accgccagca tttcccgcgc
      301 cggcgtattg gcggggggcg gcaaacttgc ccgcttaggc gcgaaattca gcacaagggc
      361 ggttccctat gtcggaacag cccttttagc ccatgacgta tacgaaactt tcaaagaaga
      421 catacaggca cgaggctacc aatacgacac cgaaaccgac aaatttgtaa aggtctcagg
      481 ctaagtgcgc ctgttgccgc ctaaaaggta acccggatgc ctgattatcg ggtatccggg
      541 gaggattaag ggggtatttg ggtaaaatta ggaggtattt ggggtgaaaa cagccgaaaa
      601 cctgtgttgg ggtttcggct gtcgggaggg aaaggaattt tgcaaaggtc tcaattagta
      661 tagtggatta acaaaaatca ggacaaggcg acgaagccgc agacagtaca aatagtacgg
      721 aaccgattca ctcggtgctt cagcacctta aagaatcgtt ctctttgagc taaggcgagc
      781 caatgccgta ctggtttttg ttaatccact ataaaatcga gtttatccta gttgtccagg
      841 acagccccta ttttttcata accatcacga aaggaatttt gcaaagattt tattccatct
      901 caaaacaatc atctcaaaaa tgcgtttctg accgccggta aaacaaaacc ctctaagaaa
      961 atacttagag ggttttgaaa tttggctccc cgacctgggc tcgaaccagg gacctgcgga
     1021 ttaacagtcc gtcgctctac cgactgagct atcggggaat aagcgcgaat aataaaacag
     1081 aaataccgaa cgtgtcaata taaattgaca atcgattgca ctttatctgc aagcccgcaa
     1141 tctttatatg ttatatggct tccgcaatat gccttgccgc acgtttggca tccaatagga
     1201 ttaaaccaag tctgccggtt tcttttgcca ccagcaccaa cacggcatct ttacccgcct
     1261 gacttaaaag gatatagcct gattttcctt taatcatcac ttgttccaat tccccgcagg
     1321 cgagttcctg caccgagcga ctccccaaag caagcaaagt ggcagaaatc gcccctaccc
     1381 tgtccgaatt caaatgtgaa ggaagcattg tcgccatcgg caatccgtcg gttgagataa
     1441 cggcagacgc gataatatcc gtagatgtat tgtttaaatc ttcaaggatt gaaatcaata
     1501 attgctgcat aacccctcct ctctcccaag ttttacacgc ggttgctgta acggcggtat
     1561 aaaatcctta ccaaagtaac aaatgcctct ttgcccaaat cgggaatgcc gccgataacc
     1621 aaaataaatt tggttgaacc gatatacaat gggaaaaatg tcaattcgct ctgaccggaa
     1681 ggatcgcaaa cgccccaagc gttattgttg atatacaggt tgttcttaat cagcagccgg
     1741 tatttctttt ccatctgtgc gacttctgcc gccaacaacc ccaactcttc cgccgcctca
     1801 tgatggaaat tggcgttggc aagatacaga ccgttccgat cgaccaataa cgccttaccg
     1861 ctgccggaca attgttccat cagcaacggc aattgctcgt ccgacaaatt gatgccgtct
     1921 gaatgaccgt tttcatcgcc atagaggaat tcgagttttt gcaaacggta caacaggttc
     1981 aaagcggtat cgatgtcggc ggtgtccgcc caggtaagca gcttctcact gctgaccatt
     2041 tcgtccgcat ccgctttcaa caggctgtgc aacaaagttt taccggcact gggggcatcg
     2101 ctggatacgg cataaaatgc accggcagga gtcaggcggg gatataaatt tgcttgtagt
     2161 gaaagtgttg attccatatt aaacctccag tcccggatca atagaaaata acattgcgct
     2221 aaccaattgt tttacgtcat cttccttacg ggcatcaatt tcaaaaaccg gaacattaag
     2281 attatgtttt gcaagatatt tgtgatacac gtcgataccg ggctgagagc gtatatccat
     2341 cttggtaata ccgacaacga cgggtgcctt ctccagcagc cctcgaaacg aatgtaaaaa
     2401 gaattccaaa tctttcaacg gattggttcg ggcattatct aaaagcaaga ccaaacccat
     2461 actgccttgg cttaagattt cccacataaa gttgaaccgt tcctgaccgg gcgtaccata
     2521 taaatggact ttggtatcct catccaagct gatggccccg tagtccatcg ccactgtcgt
     2581 attccttttc ctatccaaag tcatatcgga tgcggaagca tcggtctgaa cgagtgcttc
     2641 gtccgaaata gccgcaatgg cagtggtttt ccctacgccg acaggtcctg tgaaaataat
     2701 tttattttct ctcatctctc cgcctcttag ctgcccaaca gttttttcat cagcctttgc
     2761 agaaggccgc gcgactggga ttgggatggt gttgtgattt tttccgcttt tttcatcatt
     2821 tcactatcag aggcagaatc ggctccgata tttattttat ccgccatatc ggagtatgcc
     2881 tgttgtgaaa ccgtttttaa atctaccgac aaaaacccgg ttgtataggt tgccgcaaga
     2941 taattcagaa tatcattgag gtttaaaggc atcactttat acaacacgtt aaggttgacg
     3001 gatgccttgg tcagaaatgc cgacaagcgt atcgaccccg gcacacttgc caaccgggtc
     3061 aggtttggcc aagatttcaa cgtaaacgga gtatcgggag aaatcggata aatcaacctg
     3121 ccctgcgccg tccaaatgga aaactgccac atacaggaca taatgcctac tttagccttt
     3181 tcgcgccatt gcgggttatc gggaacagtc ttgcagctga cctgcaaatt ttcgtctttg
     3241 cacaattctt cgagtttttg cacactttct gtcagcaaaa cccgttgtat cgaggggaaa
     3301 acaataagga ccggcttatt tccatgcaag atagcgatgt cctgcctgtt cttttccgca
     3361 aaccgcaacg cccccaataa tcctttattc gggttaaact ggcgtatcgt aaccgtacgc
     3421 tgcacattcc cgttattttt cgccgaccgg tctgcgggtg caataaacga tttcccataa
     3481 acattctcgc cctgcaacaa tttgcggagc ataggaaaca atgtttcaaa ccgaatcggt
     3541 ttgggcaggt agggaacttc agaatcggga actttctccg aacagacggc gacgggtata
     3601 tccttataac gctcggcaag ctctttccaa agttcaaaac cgccctcggc atcggtatcc
     3661 gccaaaacca aatcgggcac ggcactgccg tctgaagggg atactgtttc ataacgggtg
     3721 gtattgtgca ttttgaatgc cattttgaaa acggattcct gctgcgccgt catccccgcc
     3781 aacattacgc gtactgtttt aattttcggc agttgaactt ccatttttat tttccgtacc
     3841 gttttatttt tttaatattt tgattcatac gctgcagcag ccggctcatc agcataacga
     3901 cctcttcagg aagcctgtcc gcacgttccc tcaataccct taaaaactgc cccaacctat
     3961 cccaatcttc agtacgttca taaatatcga tcaacgtaat ataaagctgg gactcgtcgg
     4021 gatatttcaa taccgcctgc tccaacacat ccattgccgc ttcaatctga ccatacatca
     4081 gcaacgactc tacttcttta accgcatcgt ctgccggaga cgaaccggtg ttgatcaacg
     4141 aagaatcttg aagcaccaaa tcccgatgtt gcgatttgaa tttctgtata tttttcggca
     4201 gatacccgtg ccccataccg atgtctttga tttgccggtc gttcggccct ttttccaaat
     4261 catcgaaaac ttcatggtaa cccaagctgt acccccaccc cagcatccgc tctttaacct
     4321 gcctgccgta gttgcccaac gtttggtaaa gtttccacaa atgtccggca aaacggtcta
     4381 tgtccgcgtg ttggtaatcg agtttcaacg catcgataat caggtttgca ggtttttcgg
     4441 aagtttggat ggcacggtcg tattgtttcg atgccgtttc atagctgact ttgtctttaa
     4501 ggattttcgc accttgatcg gcacggacca aaccggcaat cgcaccgatt tcctcttgac
     4561 tgattccgga cacgtctttt ttgccccgca caatcgggat gcgcttgatt tcttcggctt
     4621 cataagcctt accgccggca tccggcgggg gcgatgcgga agctgccgtc gcagaaccgc
     4681 cttccgcacg tttttcaatc tcctgagtac cccatcccaa accttcttcc gccaagacgc
     4741 ggatacgcaa atggtttgaa tcgcgctgta atgcctgttc gatatatttt gccaaaagtt
     4801 cggaaggaat cagtttgccg tatttttgca gattgtctgc caaaacatcg acatccccca
     4861 cttcgagatt gatatcgagc agctcgcgga taaggttttc aggtttcgct tcaccatccg
     4921 gaatgccgtc cagataggca gccaaagatt cggcagcctt gccctgataa ccgaattgct
     4981 tataaacctg atactccgta agcggatcga cttcttgcgc ggatacggcg gcggatgcgg
     5041 tctcggcact ttcgttccaa gaccagtcgg gttgcgtgcc gtctgaaacc gattgtccaa
     5101 tctgatcgac ccagtccgaa tcattgcttc cgggtgtctg cccctgcgta ttgccgacac
     5161 cttgggattt gcgcttcggt gttttcttac cctgcttcgc acgcataacc aaaagcatca
     5221 gcaataccgc cagtgccaaa ccgataatta atgagttttc caaaggatac tcccgatacc
     5281 gtaacgagcg gatagctgac cgcctgcaac ggccattgtc cgcttttatt attaacgatt
     5341 tactgaaata gacttgtaag ttttaaatca taccataatt taacgtttaa caatatgcct
     5401 tctgcacaag cctcgccata ttacctttta cccacatcag tatcaatacc cgatataaaa
     5461 ataactttgc ccataagctg ccttattgcc tgcccgccgc agagtagcgc gcgataaaaa
     5521 ataacggatg ataagtcagg tgcactttgc ccgacggcat actgaacgcc gacaaataat
     5581 cgccaataaa tccattgaga ttttttcttg tccaattttt ttggttcgtg gctgttacgc
     5641 ctgtatattt aaggtgtttg agtacatcta acggcgtatc aaagtctagt attaccttaa
     5701 aatcctcaca ccataaaagc tcaaaatctt tggctaacca agtctgccat tgggataaag
     5761 tcgggtaatt taagcctata tttgtaattt ggcggacttc ttttaaattg tctttgccaa
     5821 aggttgcaac cgccaataat ccgtttgctt tcaagcctgt tttgcaatgg gcgataaaag
     5881 cgtcgggttg atgaaaccat tgcacggcag atgcgcttgc gattaagtca aattgtcgtt
     5941 gaaaaggaaa gttttccgca tcgccgcaat aaaaatcaaa ggattgcggc agtttttcag
     6001 ccagttgggg ctgcacatcg cacaaatcat taaataacca ataattcgct gaaatctgtt
     6061 tttgcagcaa ggcactcaac attcctgagc cgcagcccaa ttccaacacg ttttccaatg
     6121 gcatatccgg caaataatct tgcaaatgcg ccattaaatt aatcgtcatt ttttgttgga
     6181 ttaaggcgtg ccggtcataa tcgtttaatg ctttttggaa agcctgccga atgcgcgatt
     6241 tatttatggc agtcagtgat tccatagtgc cgaccaatgg gtgaatcttg aaaacaggta
     6301 atgtccgccg tcaatttccc gaacggtgca acgcggtgtc caatatcggt gctgattggc
     6361 aggcataaaa attttatcgc ctgatccgac caaggcattt gtccagcgaa tcaaatctgc
     6421 gcgcctatct tgcccgatca tctcaaaaag tgcggtaagt tcttgatgaa tttcgtcaaa
     6481 cgggcgtgcg ggaaattgtt ggtaatcttc aaaagatact ttatcgccac acattctgcg
     6541 ttcaaatttt aaacgggtgt tttccgtgag gttctccaat gtgcctttaa aaacggcgca
     6601 agggataccg aaattatcat cgcaaggcaa acctgtgcca ttcactgccg ttgcggattt
     6661 taatcttatt ccttgcaatg ccctctctgc cgcccaaacg cccattgacc acgccaccaa
     6721 acggatgtgc cgataggcgg aaaaatcaaa atccaaattt aaatcttgat aatcgtagca
     6781 aatcaataaa tcgtgatttt ccggcaaaat caaatgattt acagcatcgg gcggcgttcc
     6841 ccaacctgca aaatacagga ttaaatgtcc gccttgatga ttgtaaaatt ttgttttcat
     6901 atcatatcct tacaggcaca ccgcaaactg ccgcacttca tccattgtca tatctgccgt
     6961 caaagacaat cgtattctgg atgtaccttt tggtactgtc ggtggtctga tgggcaggca
     7021 ataataaccc tgcctttgca ggtattccgc tttggcaagg gtggcttcat tcccgcctaa
     7081 aatatagggg acgatacagg tttggctcgg cattatttgc gtccgatgcg ccacttcccg
     7141 ccgtaaaaat gcgcttaact gctcaagatg gcttctttct tttgagaatt gcggcaatcg
     7201 ttcaaaaata aaataagtcc aagccacatt aaacggcggc aatgcggttg aaaaaatcaa
     7261 tgggcgcatt tgattaatca aacattcttt caatacttgg ttgcagacgg catacgcccc
     7321 caccgaggct aaggctttac cgaaagtgcc gaccaataaa tcaatctcgg caatcaaatt
     7381 atcccgttcg gcaatcccca atccgttttg cccataaaca ccgattgcgt gggcttcatc
     7441 cacataaaga taagtattgg gaaactgttt ttttaattgg acaagctgtt tcaaatccgc
     7501 cacatcgccg tccatactga aaacagattc ggtaacgata aaagtgcggt caaattttcc
     7561 gacgtttttt tcaagcagat ttttcaaatg ttcataatca ttatgacgat aacggaaaaa
     7621 cgcacaccgg ctcaaacgga tgccgtcaat catactggcg tgaacaaatt tatctgccaa
     7681 aatcaaactt ttcgtcgtcg tcaaagcagg caaaataccg agattggcgt gatagccgct
     7741 gttgaacaat aacgcgcttt cccgttggaa acgttgtgcg acaagctgct caagatcggt
     7801 ataaatagga aagttgcccg ttaataaacg cgatgaagaa ctggtaaaag agggaaaatt
     7861 accgccgtat tgctgcaaaa aagaccggcg caagttttca tctgatgcca aacccaaata
     7921 atcattagac gacatattca gcattttgcg gttttcccgc gtaatatacc gcccttgatg
     7981 aatcaaatcc ggaatcgaac gatattggtt ttgcgcgccg agttgttcaa gctgttgttt
     8041 aaaaacattc attatgatgt aaatattcct gagttaaagc ctgaaccaac ccagcatcaa
     8101 acaatcaagt aatgcccttt taataaaaac cgttttgccg ccgacctttg ccacacccct
     8161 gctttcataa tccaaggcgg aaatttccgc gacatttgtt tccgttgcca ttacccaatc
     8221 cgtccgcact gtaccgaagc gcatattttc gcacaaattg gtacggtttc aggtatgatt
     8281 tgccgaaaac ctatcggaca cacaccatat tttgatatga ataaaacaat ctgccgcact
     8341 gctgcactat tgataagcgg tttttcatac gcaaacaccg tcattcccga tgtctccccc
     8401 gtcgcacaag gtcaacatgt cttcattaac atccctcagc aacgcctgtt cctctacacc
     8461 gacggcaaac tgaccaaggt ttatcccgtt gcagtaggtc gggcgatgac gcaaaccaat
     8521 ctaggcgaac ataaaatcgg tgcgaaagcc tataaccctg tttggtacat ccccaaatcc
     8581 atacagaaag aacgcggcga cggcgtaaaa accatagccg ccggcccgga caaccctttg
     8641 gggccggttt ttgtccgctt aggcgacccc aaactcggtt tgggcataca cgggaccaat
     8701 gcgccggcca gcgtccccgg ggttcggagt cacggctgcg tccgcatgaa atcgcccgac
     8761 gcgctcgagt ttgccaaaac catcgccagc ggctcgcccg cctccgtcat ctatcaaatg
     8821 gcgggtctca atgaagatgc ggatcgcaac ctgtggcttg ccgccttccg cgacccttac
     8881 ggtaagaaca accttgacat cgcctctctg aaaaaaagta ttgcgcaatg ggcaaaaaca
     8941 cagggtaaaa ccatcgcgcc cgagaaagtc gatgctgtac tcaaagaccg caccggatcg
     9001 gccgtctgcc tgacctgcgg caaaaacggc aagatgaaga tgccgctcaa atcgctggcg
     9061 tggatacagg gttcttcctc atacagccaa gctgaagtca ttgaacaaac tgaggaaacc
     9121 aactctgccg aaatatccga gacacgcacg cccgaagtgc ctgatgtaca cacgcccgag
     9181 gcacaaccgc atttaaatac ccaatccgac ggcacgccga ctgcctatac cgaaccggct
     9241 gccgattcat cgccgcaagt agaaacacct gatcaggctg cttccgagcc ggttgatgta
     9301 ttattttcaa tagatgtgat acggcaggga aatttgcgtt taggtaattg aataaccttc
     9361 tgattattta atgcttatgt ttatcagaag ttgataggcg gtttggtttt tgtttggctt
     9421 ttcctacacc gccgcctgcc gctttctgca acattcaagc gcacaaatat gccatctgaa
     9481 ggctttagac ggcatatttc acgataatag tcgcccaatc aaataaacac agattggaaa
     9541 tttattttat ttttccctta ccaatacccc agaactttcc accaaatgct gccgataacg
     9601 aaaaaaatca gaaaattgac tacgctcatg ataaaacccg ccttccacca ttctcccatt
     9661 gtggtgtagc ccgaaccgaa aatcacaggc gaagtaccgg tcgcataatg agtgagggtc
     9721 atcataatgt tagatgcggc cgccatcatc agcgcggtcg gcatcgccgg ggcattcagt
     9781 gaaacggcag cagcgaaaaa tgcgccgaac atagcggtaa tatgtgcagt agtactggca
     9841 aacatataat gcgcatacat ataagcaagc acgaggatta cgcccgcagc cgtgccgcta
     9901 acgcccaaac cgccgacact ttccgccaac actccggaga accatttaat cagtccgagt
     9961 ttatttaaaa atgcggccat cataatcaat gcgccaaacc aaataatcgt atcccacgca
    10021 cttttttctt tcaaaacatc gtcccaagtc aatacaccgg aaagcaaaag caggcttaat
    10081 ccgataaatg cggtggcggt ggcgttgata ctaaaagcgt gattgccggt aataagggcg
    10141 ggaacatctg cccacaacag cagcaagata ccgaaaatga ccgccataat gatttcgtct
    10201 gccgacattt tacccatctc cctcagacgg tctttggcaa attgaacggc attgggcgtt
    10261 tctttaattt caggcggata caaaaaatat aaaatcaaag gcataacgaa aaaggcgata
    10321 acgccgggaa cagccattgc ccacgcccac gccccccaag aaagacggaa actactgcct
    10381 aaattttcgg caatcaagtt gacgattaaa gggttggggg cagttgcagt aataaacata
    10441 gccgacgaaa tgggattgga atgatagttg accaaagcca aatatttacc catcttgcct
    10501 tctgtgcctt ttgcgggatt ggagccgtaa ctgccggcaa tcgactgcat aatcggatgt
    10561 ataatgccgc cgccgcgcgc ggtattggaa ggggtaacgg gagccagcag cagttcggaa
    10621 agagcgagac tgtaaccgat gcccagcgtt tttcttccaa aaacggcgat aaacaaatat
    10681 ccgatacgca tccccagccc tgttttgagc aaaccgcgcg aaatcataac tgcgatggca
    10741 atcagccaaa tcaacggatt ggcgaacgca ctcaacgcat cgctcatcgc cgcgcccggt
    10801 ttgtcggcgg ttacgccggt tactgcgacc aacccgacgg caataatcga cagcgcgccc
    10861 aacggcatgg ccttgccgat aatggcggca atcacaccga caaacatggc cagcagcgtc
    10921 caagcctgag gcttgacccc gtcgggtacg ggcagtgcca aaaccagggc gcacaatact
    10981 gcggcaatgg cgaggggtat cggtttgaaa cccaatttca tcatattgac ctccgtaaaa
    11041 aagaccgtcc cgaaaaatcg gaaaaataat atttaactaa ttgttttata atatatattc
    11101 agatatttca ccgtctttcc gatatgcggc tccgggcaac ttttgtttca gtatttgaat
    11161 tttcattaga ctgaatacgc cgtttgaacg gcacggcgaa aacccggggg atgccggacg
    11221 ttcagtcctt tttcgcacct tgaaggtaaa gcatttccaa ggcaattgtg gcgccggcca
    11281 aagcggtaat gtcggattgg tcgtaagagg gggcaacttc tacaacatcc ataccgacga
    11341 tgtcgagatc cgtcagccca cgtaggattt ttaatgccct gtcgctgctc aagccgccgc
    11401 atacgggcgt accggtcccg ggggcgaacg acgggtcgag gcagtctatg tcgaaagtca
    11461 ggtaaacggg catattgccg acggtttctt tgattttacg gacggtctct tcaacactgt
    11521 cttcattaac ttggggggcg gtcaacacag taaaaggcaa ttttttactg tgttcggtac
    11581 gtatgccgat ttgtacggaa cgggacgggt cgatgaggcc ttccttgggg gcggtataga
    11641 acatcgtacc gtggtcgtat tcgctgccgt tgtcgtaggt gtcggtgtgc gcgtcaaaat
    11701 gaatcagtgc gagtttgccg aaatagcggg cgtgggcgcg caacaacggg agggtaatga
    11761 aatggtcgcc gcccaaactc aaacagcgtt tgccggaaga aagtaatttg ccggcgtgcg
    11821 cttccatttt ttcgacaaaa tccctgctgt cgccaaaaga aaaaaccaag tcgccgcaat
    11881 caataatgtt caggcgttcg cgcacatcaa atgtccatgg aaacctgcgg tgctcccaag
    11941 cgaggttgac ggaggcgcgc cggatggctt caggaccgaa acgcgcgccg gaacgccctg
    12001 aaaccgccat atcataaggc acgccggtaa taacccaatc ggcatgactt tcatacggca
    12061 taaaattaag cggcaggcgc aaaaacccga aattattgga aacgagggag ttgtcggttt
    12121 gtcctgccag tgtgctgtat tgcatcgtaa tgattccttg taattggttt caatcggtcg
    12181 tgatgattgg tgtttgagta agaaaatcgg gcttcagacg acatatccga tgccttgatg
    12241 cgtctattcg tcttccaaat aggtataacc attaagcccc gcttcgagtt cttttaagaa
    12301 agacatagcc tgcgaggcag gaaggtctga atgttcgatt tgttcgcgat agcgtttcat
    12361 cagctctttc ggatcttgat aaacgtattc gagcatatcg gcaacggtgt ttccttcatc
    12421 gtaatcgatg acggtaaatt gtccgtcttc ccctacaaca acatcggcag tggcagtgtc
    12481 gccgaaaaga ttgtgcatat tgccgagtat ttcctgatat gctcccacca taaaaaagcc
    12541 taaaagcggc ggctcttctt cgggataatc aggcataggc atcgtaccgg cgatgccgtc
    12601 tccgtcgatg tagtggtcaa tcgtaccgtc tgaatcgcag gtaatgtcca acaacacggc
    12661 gcggcgcgca atcggttcat tcaaaccggt aatgggacaa acagggaaaa gttgatctat
    12721 gccccaagca tcgggcaaag attggaagag tgagaaattg acatacagct tatcggcaaa
    12781 acgttcttgc aattcgtcaa taatggttcg gtgagaccgg tgtttttcat taaacaattc
    12841 gccgacttca tgacagatat ttaaatacag ttgctccgcc cacgcacgtt gcgccaaact
    12901 caacagcccg acattatact gattatgcac atcggcaaga tcaaactgcc cttcgtgtat
    12961 ccagctgcgt aaggaacgtt tttcccgcga ggcggaaata tccgtccaag tttcccacat
    13021 actgtgcaac acacgcggtg cttcgggcga tggcgcatcc agccggcgcg gtttgtaacg
    13081 ttcaacgcct ataacattag caaccaaaac ggcgtgatgt gcggtaatgc cgcgcccgct
    13141 ctcggtaatg attgtcggat gcggcagccc gtgttcgaga caagcctggc tgatgcccca
    13201 tacgactgtg gaggcatatt cgttgaggct gtaattaacg gaacaatccg attgtgtgcg
    13261 gtttccttcg taatccacgc caagcccgcc gcctacatca aaacagcgga tatttacccc
    13321 cagtttgtgc aactcaacat aaaaccgagc cgattcgtgt acacctgtgg caacatcacg
    13381 gatgttccca agctgcgagc ctaaatggaa atgcaaaagc tgcaggcagt ccagcctgtt
    13441 tttttgtttc aaaatatcga ccagttgcaa aacttgggaa gccgacaagc cgaattttga
    13501 tttttcccca cccgaagact gccattttcc cgaaccttgg gaagccagtc tggcgcgcac
    13561 acccaaacgg ggcttgatgc cgagtttttc cgcctcttcc aataccattt gtatttcgga
    13621 cagcttctca atcaccaaat aaacctgatg ccccagtttt tcgcccatca aggcgaaacg
    13681 gatatattca cggtctttat agccgttgca gacgattaat gtttgccggg tgccggcgtg
    13741 tgccaaaacc gccatcagtt cggctttaga accagcttcc aaaccatgcg gttgtccgct
    13801 tgacataagc gattcgatga cgcggcggtg ttggttgacc ttgatagggt aaaccaaaca
    13861 ataaccgccc ttatagccgc actcttcccg tgccgtctga aaggcgcggt taatgtcgcg
    13921 gaggcggtgt tcgaggattt gcggaaaaca aaacaaaaca ggcaggcgcg cctgatgttt
    13981 ttgttgcacg gcttcagtca gtttttgcag tgaaacagtt tgattgtgtt gcgagggatt
    14041 ggggcggacg atgatttcgc cggaatcgtc aacatcataa taacctatgc cccaatgatt
    14101 aatgttgcac acttcacgga tggtaaggat aggcataata aacctgctcc gtctgtcgtg
    14161 ttgaaaagga atgattataa caaatcagcg tgaaatgtca tttttttaat aagaaaagcc
    14221 tgcctcatac ctgatgagga acaggcaaaa tgccgtctga acgcttcaga cggcattttg
    14281 gttcatcttt ccatcaaagg agtcagcgat cgagctgctc tttgatgatt ttcaggtcgg
    14341 ggtaagacaa cacgatgtcg tattcgcggc cgtctttata ggcttccact tccagcacag
    14401 gcttacccca atggtcgtcg gcatcgacat cgtgaacctg ataaccgcgc tgttccaaca
    14461 ttttcacagc ttttacgcgg ttctgttcaa aattgggatc actgtaaatc tgacgctcgg
    14521 cagagtcgct ggcaaatgcg gttgcggcac tcagggaaac aacggcagcc aataacagtt
    14581 ttttcatttt cagtcctttc tttatcggtt gattgaataa gatgtgtttt tcaatgccgc
    14641 cattaaaaca cagcaaaatt aggtttgaat tagagggaag tcaagaagcg taaatgccgt
    14701 ctgaaaaaaa cagagccgtc aaacggctcc gttttcctta tgcttctttg gtttcagccg
    14761 ccttttggcg caggcgcagg ctcaattcac gcaactgctt gtcgtccacg ctgttgggcg
    14821 cgttggtcag caggcattgg gcacgttgtg ttttcgggaa ggcaatcacg tcgcggatag
    14881 attcggcgcc ggtcatcagg gtaaccaaac ggtcgaggcc gaatgcaagg ccgccgtgag
    14941 gaggcgcacc gaatttcagg ttgtccaaga ggaagccgaa tttctcttgt tgctcttcag
    15001 ggctgatttt cagcgcggca aacactttct cttgtacgtc tgcacggtgg atacggatag
    15061 agccgccgcc gatttcccag ccgttcaata ccatgtcgta ggcacgtgcc aaacaatttg
    15121 ccgggtcgga aaccatcagg tcttcatgac cttcttttgg cgcagtaaac ggatggtgta
    15181 cggcaacgta gcggtcggct tcttcgtcgt attcaaacat tgggaagtcg acaacccaca
    15241 aaggtttcca ttcgtctgtg aaatagccgt tttccgcgcc gtgttccaag ccgactttga
    15301 tacgcaatgc gccgatggct tcgttcacga ctttggcttt gtccgcaccg aagaagatga
    15361 tgtcgccgtt ttccgcgccg gtacgcgcaa tgatttcttt cagggcattc tcagacagga
    15421 attttacgat tggagattgc aggccgctgt cttcgccgtt tgagaggttg cccacatcgt
    15481 ttactttgat gtatgccaga cctttcgcgc cgtagatgcc gacaaattta gtgtattcgt
    15541 cgatttcttt gcggctgaat tttgcgccgt tcggtacgcg cagggcgact acacggccgc
    15601 ctttcatatc tgccgcgcca cggaagactt tgaattcttc cgttttcatc aggtcggtca
    15661 actcggtaaa tttcaagttg atacgcatat ccggtttgtc agagccgtag tagaacatgg
    15721 cttcggcgta aggcatacgc gggaagtcgc ctaaatctac gtttaaagca tctttgaaga
    15781 cttgtttcgc cataccttcg gtgatgtcca taatttcatc ctcgttcaag aacgaggttt
    15841 ccaagtcgat ttgagtgaat tcaggctgac ggtcggcacg caagtcttcg tcacggaaac
    15901 atttggtaat ttgatagtaa cggtcgaaac cggccaccat caacagttgc ttaaataatt
    15961 gcggtgattg cggcagcgcg aaaaactcgc ccggatgaac gcggctcggc acgaggtagt
    16021 cgcgcgcgcc ttccggagtg gagcgggtca gcatcggcgt ttcgatgtcg atgaagcctt
    16081 gcgcgtccag ataacggcga acgcccatag cgacttgata acgcaggcgc aggttgcgtt
    16141 gcatcaccgg acggcgcaag tcgataacgc ggttggtcag gcgaacgttt tcgctgatgt
    16201 tttcatcgtc gatttggaac ggcggcgtgg cggcggcgtt caagacttcg atttctttgg
    16261 caaggatttc gattttgccg gaaatcattt tgtcgttggt cgtaccttcg ggacggttgc
    16321 gtacgcggcc ggtaatgctc aaaacgtatt cgttgcgagc ggaatcggca gcggcaaacg
    16381 cttcgggcgt gtcggggtca atcacgactt ggacgatgcc ttcgcggtcg cgcaggtcga
    16441 taaaaatcac accgccgtgg tcgcgccgac ggtgtaccca gcctttgacg gtaacggttt
    16501 ggtctaagta ttgctcactg atcagaccgc aatagttggt acgcataaaa tcacctttta
    16561 ttgatttaaa ctgaaaacag aaaatgccgt ctgaacggcg gctttattgt tgttcgggca
    16621 aatccgcctt ttcagacggc ataggtcctg ccaatgtttt gacgggcagg tcgtcaggga
    16681 tgaccatacc cagcgaaatc acatatttca acgcttcgtc cacgctcata tcgagttcgc
    16741 gcacatcgct tttctttacc ataatatagt aaccgccggt cggattcggc gtggtcggaa
    16801 catacacgga aagataatcg ccgtccttcg gcaatgcggc cttaaccgca ttcgacacct
    16861 gaccggacac gaatgcgatt gtccaaatac ccgattgggg aaacggcacg agtactggtg
    16921 ttttaaacga acggctgctg tcggacagca acgattcgga tacttttttc acactcgaat
    16981 agatggactt cacaaccgga atccgcccca acaagctgtc ccacgcggca agaatctgcc
    17041 ggcccaatac gtttgcggca aacaatccgg ttacaaacaa tacggcaatg gcaacgataa
    17101 cgcccagccc cgggatatta aaccccaaaa catattgcgg ccgccattgc ttcggcagca
    17161 ggttgacgag ctgatcggac gcggaaacga tataggaaac cacccaaacc gttaccgcaa
    17221 tcggcagcca gaccaaaatg cccgtaatca gatatttttt taacgccttg gcagctttac
    17281 cgccttcggc cgcaggttcc gtcatcttgc ttgattccga caaagtccgt acaaaccgca
    17341 cattatacgc gtttgcccgg attcaaacga aatttttatc ccgccccgcc aaaccgccgg
    17401 cggcttcaga cggcacggca acttgatata ccgtctgaac acgcggttca gatgccgtcc
    17461 aagtcgttga acatcaaccc gataccgata ccgttctgct tgtggttgta gtcgatcaga
    17521 ctctcgccgt aaccgtggaa tccgcgtacc acgcctttga gtttgccctt aatcggaaac
    17581 gtgtaggcgg cttcaatcgc gccgtagccc gttttggggt tgtagcgcaa tacggaatac
    17641 acattctgcc tgtcgttcag gcggtactgc agcttcacgt cgccataccc catatagtcg
    17701 gcaatatcgg gattgtcgtt tttatcgccg ctctgatcga acgcacgcac ccacacgcgc
    17761 ggaatcaccg tcaatttgcc ccattccatg cctgccatgg cataaatcct gttccacgaa
    17821 cgcgattcgg gacggctctg tccgttggac tggtggacaa aacctgcacc gagcatacgc
    17881 agcctgccgc cgaacggcaa atctgccttc acaggctggg tcaggaaaat ttcaggtttg
    17941 taatccgtat tgcggaacgg cgcggatttc ctgccttggt tgtaaatctg ccaatcggat
    18001 ctttgggtgt agccgaacca cagatccgcg cgggttttaa acaaatcttc ggcaattttg
    18061 cttttgaacg aaacctgcaa tttggtttcc gcacgtttct gctgtccgaa tttttcctgt
    18121 acagtcgtac cgcgcgtcgg cgaacccggg gcatagttgg gcgaattgtt gtaccagagc
    18181 ggcataaggt acatcggatt gtgttcgcgt acgcccaaca gcccgcgcaa atcgtttttg
    18241 tccaagtcgt acatcaggct caaaggcgta tagatgtcgg cggtttcgcc cgcactgtcg
    18301 gcaggaagcg catccccgcc tttttcaaca acaatgaccg cctcgccctt atccaggctg
    18361 ctgcggacgg tttccgtcag attgagtacg gctttcgact cctgcccttc ctaccctgcc
    18421 gaagacggaa gctgtgccgc aaaaatcctg tcgtaacacg ccaaacgcgt aacattgtcc
    18481 gtcaaagcgg cgcattgcag cgcggtctct ccaaaagcgg atgccatcgg caacagtcct
    18541 gtcaaaagaa tatagcgcat attccgtgta ttcatctccg cccccattgt cggcatattg
    18601 gttttcaaac ggcattttat agcggattcg gataaaaacc gcaccctttc cgccatttcg
    18661 ggattttgcc cccgcaatac agaaaacccc gaaaccgtcg ggcttcaggg ttttccgctt
    18721 atcgcgtatc aaccgccttg gcggttttgc aaaaatcaag ccagtgcttt tacttttgca
    18781 gacagacggc ttttgtggcg tgccgctttg tttttgtgga acacgccctt gtcggcgatg
    18841 cggtcgatga ctttgacgga ctcttggtaa accgcttgtg cggcagcttt atcgcctgct
    18901 tcgactgctt tcaatacttt tttcactgca gtgcggaatg cggtacgcag gctagcgttg
    18961 tgggcgcgtt gtttgacgga ctggcgggca cgtttgcgtg cttgtgcgct gtttgccata
    19021 ttggaatctc ctgaaagaaa aataaattct gtaaacgcgc aattttaaag ggggtttaca
    19081 ttatatgcaa gccttttctc tctatccgcc cgtcggacac cctgacagcg caaaaaaacg
    19141 gcaaaatcgt gcggacgttt tctccctctt ttgaaaacaa ggtaattttt taggaaaatc
    19201 aggtcaatat cgctttgagt ttgcacaaat ttactttaca atgcccaaac cttgcgccgg
    19261 ggtgtttatg gggcgcgggg ttttcttttt ttccaacctc tttcatcagg aatctgcccg
    19321 tatgaaaaaa tccgtattag ccgttttggc cgcgctgtct ctggcagcct gcggcggcag
    19381 cgaaaaaaac gccgtgcaac ctcaagcaga cgctgcgtct gctgccaatg ccgaagccgc
    19441 tgccaccgat actctgaaca tctacaactg gtcgaactat gttgatgaga gtacggtcga
    19501 agactttaaa aaagccaaca atctgaagct gacttacgac ttgtacgaaa acaatgaaac
    19561 gctggaagcc aaaatgctga ccggcaaatc cggttacgat ttggttgtgc cgggcatcgc
    19621 cttcctgccg cgccaaatcg aggcgggcgc gtatcaaaaa gtcaacaaag acctgattcc
    19681 caactataaa aacatcgatc ccgaactctt gaaaatgctg gaaaccgccg acccgggcaa
    19741 ccagtatgcc gtcccctatt tctccggcgt gaacacgatt gcgattacgg cgaaaggcaa
    19801 agagctttta ggcggcaagc tgcccgaaaa cggctgggat ttgctgttca aacccgaata
    19861 cacccacaag ctgaaatcct gcggcatcgc cctgtgggac accccgagcg aaatgttccc
    19921 gattttgctg aactacttgg gcaaagaccc caaaggctcg aatcctgaag atttgaaggc
    19981 ggcggcggaa gtgttgaagt ctatccgtcc ggatgtcaaa cgtttcagcc cgtccatcat
    20041 cgacgagctg gcgcgcggcg acatctgcct ggcggcaggt aacggcggcg acttgaactt
    20101 ggcgaaagcg cgttctgaag aagtgaaaaa caatgtcggc atcgaagtgt tgacgccgaa
    20161 aggtatggga ttctggattg agtcttggct gattcccgcc gatgcgaaaa acgtcgccaa
    20221 tgcccacaaa tacatcaact acacgctcga ccccgaaatc gcggcgaaaa acggtatcgc
    20281 cgtaaccttc gcgccggcca gcaaacctgc gcgcgaaaaa atgcctgccg agctggtgaa
    20341 cacccgttcc atcttcccga acgagcagga tatgaaagac ggtttcgtga tgccgcaaat
    20401 gagtacggat gcgaaaaaac tgtcggtcag cctgtggcag aaaatcaaag tcggcaccaa
    20461 ctgatttgaa gcattaaaaa tgccgtccga acatcgttcg gacg
//
LOCUS       DAXIFD010000013        20450 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.013, whole genome shotgun sequence.
ACCESSION   DAXIFD010000013 DAXIFD010000000
VERSION     DAXIFD010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20450
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.013"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..606
                     /locus_tag="ACFOCN_000385"
     CDS             <1..606
                     /locus_tag="ACFOCN_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6969593.1"
                     /translation="YKIGISDVSNFEGRMRHLENNGYANVAGLERILAVKTDNYKEKE
                     NLLHEIFSKSRIGDTELFAVDENLVKRLFLSLRGEIVFPKNETAESEFEKSVHERRQE
                     GNAGSGRKQLLDLVRRGHREYPYALPRLLAGAASYKPKKSKIRLFKEAYFGKSGTRLT
                     DEIADGIHIYTCFSRADLEKAYSEYLELFKSESDAEGRKPQ"
     gene            643..1404
                     /locus_tag="ACFOCN_000386"
     CDS             643..1404
                     /locus_tag="ACFOCN_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2314 domain-containing protein"
                     /protein_id="HFC6969594.1"
                     /translation="MMGDSVIYYVEQADKPVNRAGERARKTFKYFWRELFWERRRIIP
                     ALDFAMVKAPFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNEPGELTNVEQGESVCV
                     PVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQVLLVYEEK
                     EHPENLEEHPMCRNCIDDFRQQLSQNPDFLHEQDEDGYTPLHHEAIAGNALMVQAMLE
                     YGANPASKTSEGYTALDFARLAGWQNVADLLEPRH"
     gene            1459..1800
                     /gene="fdx"
                     /locus_tag="ACFOCN_000387"
     CDS             1459..1800
                     /gene="fdx"
                     /locus_tag="ACFOCN_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009425374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HFC6969595.1"
                     /translation="MPKITVLPHTTLCPEGAVIEDAPEGKTVLDVLLDHDIEVDHACE
                     KSCACTTCHVIIRKGFDSLEEPTELEEDLLDQAWGLEADSRLSCQAVVAGEDLIVEIP
                     KYTINHAREEH"
     gene            complement(2087..2674)
                     /locus_tag="ACFOCN_000388"
     CDS             complement(2087..2674)
                     /locus_tag="ACFOCN_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HFC6969596.1"
                     /translation="MNNMFAAKLSKLVYTASDHPDSLSEMEEFDRLILLIRKLYQILD
                     GQHILSRVTVCLHYRSRRGLIALDKAAAGCDAAMLRAQRWRIYTQIAERLAGSGGGFT
                     VTAESVSAACPELEGRYLELVRRTATSFGFVQVQEYPAGGQEETQAVPDAASDHSVRK
                     PIKINIEAKVERYPAYRPTAALKVTRRRFFRLQNR"
     gene            2887..3084
                     /gene="iscX"
                     /locus_tag="ACFOCN_000389"
     CDS             2887..3084
                     /gene="iscX"
                     /locus_tag="ACFOCN_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HFC6969597.1"
                     /translation="MKWTDTRRIAEELYDLHGETIDPRTVRFTQLRDLIMALPEFDDD
                     PARCGERILEAVQQAWIDEAE"
     gene            complement(3152..3553)
                     /locus_tag="ACFOCN_000390"
     CDS             complement(3152..3553)
                     /locus_tag="ACFOCN_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6969598.1"
                     /translation="MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKV
                     KNSKTIDIGDIIDLTLNSLPYKIKVKGLNHQRRPASEARLLYEEDAKTATLREERKQL
                     DQFSRITSAYPDGRPTKRDRRQLDRLKKGDW"
     gene            3764..4723
                     /locus_tag="ACFOCN_000391"
     CDS             3764..4723
                     /locus_tag="ACFOCN_000391"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HFC6969599.1"
                     /translation="MKPVFLDFEQPIAELTNKIDELRFVQDESAVDISDEIHRLQKKS
                     NDLTKSIFSKLTPAQISQVSRHPQRPYTLDYIEALFTDFEELHGDRHFADDYAIVGGL
                     ARFNGQSVMVVGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKTAEKFGLPVMTFIDT
                     PGAYPGIGAEERGQSEAIGKNLYELTRLRVPVLCTVIGEGGSGGALAVAVGDYVNMLQ
                     YSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQRLDLVDTVIKEPLGGAHRDF
                     GQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRIMAYGKFSEQ"
     gene            4791..6101
                     /gene="tilS"
                     /locus_tag="ACFOCN_000392"
     CDS             4791..6101
                     /gene="tilS"
                     /locus_tag="ACFOCN_000392"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFC6969600.1"
                     /translation="MLTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVRA
                     GKRAGFVPEALHIHHGLSPRADDWADFCQNYCDMLGVGLETVKVCVEKNGLGIEAAAR
                     QKRYAAFAEKGFDILALAHHRDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWR
                     PLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGRHVLN
                     NVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSPRRKTHILRHFLKENGIPVP
                     NQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFRQEKTDKLRFLKDRQISGNLR
                     EILTGQGFVLKRHPFGLPEHLLEQDGILRTVAASDTLAVGGIHKDVKKILQGKRVLPV
                     LRPIWPLVADSGNRPLALANCCADFQYSVSDGILPVHPDFPILF"
     gene            6175..6960
                     /locus_tag="ACFOCN_000393"
     CDS             6175..6960
                     /locus_tag="ACFOCN_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HFC6969601.1"
                     /translation="MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQ
                     SGGMPVGVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISSLSCADDILALIDI
                     PLGGTLPDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGM
                     GAHFLSGIYPQADLEIWLASYKGRVFATALREEKQVVLYGEDLCEPTAWVFGNEGAGV
                     GKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSAY"
     gene            6970..7167
                     /locus_tag="ACFOCN_000394"
     CDS             6970..7167
                     /locus_tag="ACFOCN_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969602.1"
                     /translation="MPSEKIYYGVLIFLCIASMLLSPFFYAGALKPKKAALRKDGQWK
                     LILLSNTVAAAVLFWMWWKWF"
     gene            7429..7782
                     /locus_tag="ACFOCN_000395"
     CDS             7429..7782
                     /locus_tag="ACFOCN_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969603.1"
                     /translation="MKNCKFFYDPTRAIYDSGADYLTREKHRLVVIANSAWGLLLNLS
                     CYYDEVLEKRKIPFGKQEIDDDMDKVSAHKRKFKDISEIKVGDGWEYPFNYEQGMKEL
                     DEVLLKYIPFFEEER"
     gene            7794..8099
                     /locus_tag="ACFOCN_000396"
     CDS             7794..8099
                     /locus_tag="ACFOCN_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969604.1"
                     /translation="MRVSKIIGSMLLVTAVQTVFSANVYACRHNGKTSYSQTPGKHCT
                     NAGLGRDLVYSSVRPAVKDRAEDAGADDHLDSVRDEHVQNPRENTHKDASNTGAKTH"
     gene            8161..9537
                     /gene="mpl"
                     /locus_tag="ACFOCN_000397"
     CDS             8161..9537
                     /gene="mpl"
                     /locus_tag="ACFOCN_000397"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HFC6969605.1"
                     /translation="MKHIHIIGIGGTFMGGIAAIAKEAGFEVSGCDAKMYPPMSTQLE
                     ALGIGVHEGFDAAQLEEFKADVYVIGNVAKRGMDVVEAILNRGLPYISGPQWLAENVL
                     HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPN
                     SQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYL
                     VRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGSFDVLLDGK
                     TAGRVKWDLMGRHNRMNALAVIAAARHAGVGIQTACEALGAFKNVKRRMEIKGTANGI
                     TVYDDFAHHPTAIETTIQGLRQRIGGARILAVLEPRSNTMKLGTMKSALPVSLKEADQ
                     VFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVMSNGGFGGIH
                     GKLLDALR"
     gene            9744..10796
                     /gene="bioB"
                     /locus_tag="ACFOCN_000398"
     CDS             9744..10796
                     /gene="bioB"
                     /locus_tag="ACFOCN_000398"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HFC6969606.1"
                     /translation="MTVSPVALRRKTECKPHPTARYWKKCDVEALFGLPFLELVHQAA
                     EVHRQNFNPREIQLSTLLSIKTGGCPEDCAYCPQSAHHNTNLGKEQMMDVDEIVEKAK
                     IAKSRGASRFCMGAAWRGPKPKDVETVSAIIKAVKGLGMETCGTFGMLEEGMAEDLKE
                     AGLDYYNHNLDTDPDRYNDIIHTRRHEDRMDTLGKVRNAGLKVCCGGIVGMNETRAER
                     AGLIASLANLDPQPESVPINRLVKVEGTPLADAEDLDWTEFVRTIAVARITMPQSYVR
                     LSAGRSNMPEAMQAMCFMAGANSIFYGDKLLTTGNPDEDGDRILMEKLNLYPLQFELE
                     GEVAEVEKASGIKVDY"
     gene            complement(10943..11290)
                     /locus_tag="ACFOCN_000399"
     CDS             complement(10943..11290)
                     /locus_tag="ACFOCN_000399"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6969607.1"
                     /translation="MPFDTEIFYGENRGNVVEFARLAVDSGADVVFGQGPHVTRAVEL
                     YRDRFISYSGGNFATYGAINTSGISGIAPIFKIITNKQGKFISGTIIPITQADDKIPK
                     IDPEKPLSGGLFI"
     gene            complement(11632..11871)
                     /locus_tag="ACFOCN_000400"
     CDS             complement(11632..11871)
                     /locus_tag="ACFOCN_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969608.1"
                     /translation="MGGCTFFRRTAFVKQRAFEVADGNVRVLQGRFDVFQNIGIGQVI
                     DRIIAAEHNVAHADNGNGIGCLFVRRILSVHIAGI"
     gene            11858..12091
                     /locus_tag="ACFOCN_000401"
     CDS             11858..12091
                     /locus_tag="ACFOCN_000401"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6969609.1"
                     /translation="MQPPKICYAFRTPSAYGQYLADAGFDYLSFANNHSNDFGAQGIT
                     ATAASGSSFTYSIALKPLPITRPKLRKIPPSPR"
     gene            complement(12154..14013)
                     /gene="ilvD"
                     /locus_tag="ACFOCN_000402"
     CDS             complement(12154..14013)
                     /gene="ilvD"
                     /locus_tag="ACFOCN_000402"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HFC6969610.1"
                     /translation="MPEYRSKTSTHGRNMAGARALWRATGVMETDFGKPIIAVANSFT
                     QFVPGHVHLHNMGQLVAREIEKAGAIAKEFNTIAIDDGIAMGHSGMLYSLPSRDLIAD
                     SIEYMVNAHCADALVCISNCDKITPGMLIAAMRLNIPTIFVSGGPMEAGKVIGVANIQ
                     PERRLDLIDAMIESADDNVSNRQVEEVEQNACPTCGSCSGMFTANSMNCLTEALGLSL
                     PGNGSYLATHVGRKELFLEAGRMIVEITKRYYEQNDETVLPRSIATKKAFENAMTMDI
                     AMGGSTNTILHLLAVANEAGVDFKMADIDRLSRVVPCICKTAPNNHDYYMEDVHRAGG
                     IFAILKELDKAGKLHTDVHTIHAPTLKDAIEKWDITNPENTRAIERFKAAPGGVRTTQ
                     AFSQNRMWKTLDLDREKGCIRDVAHAYSQDGGLAVLFGNIAERGCVVKTAGVDESILK
                     FTGRARVFESQEDAVEGILGNQIVAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLG
                     KACALLTDGRFSGGTSGLSIGHASPEAAEGGAIGLVHEGDTVEIDIPNRSIHLAISDE
                     ELAARRAEMEARGSKAWKPENRDRYVSAALRAYGAMATSADKGAVRDVAQIER"
     gene            complement(14186..15955)
                     /gene="cysI"
                     /locus_tag="ACFOCN_000403"
     CDS             complement(14186..15955)
                     /gene="cysI"
                     /locus_tag="ACFOCN_000403"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HFC6969611.1"
                     /translation="MTVQTKTKGLAWQEKPLSDNERLKTESNFLRGTILDDLKDPLTG
                     GFKGDNFQLIRFHGMYEQDDRDIRAERAEAKLEPLKFMLLRCRLPGGIIKPSQWIELD
                     KFARENSHYRSIRLTNRQTFQFHGVPKAKLQTMHRLLHKLGLDSIATAADMNRNVLCT
                     SNPIESELHRQAYEYAKKISEHLLPRTRGYLDVWVDGKKVQSSDDFLQEDEPILGKTY
                     LPRKFKTAVVIPPLNDVDCYGNDLDFVAVSDGNGQLAGFNVLAGGGLSMEHGNTKTYP
                     NISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERR
                     MGMPFEPIRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAK
                     IHKGDFRITANQNLIVANVAEADKAKIEELARTYGLIRNDVSKLRENAMSCVSFPTCP
                     LAMAEAERVLPDFIGELDKIMAKHGTSDDYIVTRITGCPNGCGRAMLAEIGLVGKAVG
                     RYNLHIGGDREGVRIPRLYKENITLPEILSELDDLIGKWAAGRDTDEGFGDFAIRTGI
                     VKPVLDAPVDFWDASKAVPIARA"
     gene            complement(15982..17796)
                     /locus_tag="ACFOCN_000404"
     CDS             complement(15982..17796)
                     /locus_tag="ACFOCN_000404"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019344 - cysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     flavoprotein subunit"
                     /protein_id="HFC6969612.1"
                     /translation="MSEHDMQNTNPPLPPLPPEITQLLSGLDAAQWAWLSGYAWAKAG
                     NGASAGLPALQTALPAAEPFSVTVLSASQTGNAKSVADKASDSLEAAGIQVRRAELKD
                     YKAKNIADERRLLLVTSTQGEGEPPEEAVVLHKLLNGKKAPKLDKLQFAVLGLGDSSY
                     PNFCRAGKDFDRRFEELGAKRLLERVDADLDFAAAADGWTGRIVARLKEEAAKNRATP
                     APQTTPPAGLQTAPDGRYCKADPFPAALLANQKITARQSDKDVRHIEIDLSGSDLHYL
                     PGDALGVWFDNDPALVREILDLLGIDPATEIQAGGKTLPVASALLSHFELTQNTPAFV
                     KGYAPFADDDELDRIAADNAVLQGFVQSTPIADVLHRFPAKLTAEQFAGLLRPLAPRL
                     YSISSSQAEVGDEVHLTVGAVRFEHEGRARAGGASGFLADRLEEDGTVRVFVERNDGF
                     RLPEDSRKPIVMIGSGTGVAPFRAFVQQRAAENAEGKNWLIFGNPHFARDFLYQTEWQ
                     QFAKDGFLHRYDFAWSRDQEEKIYVQDKIREQAEGLWQWLQEGAHIYVCGDAAKMAKD
                     VEAALLDVIIGAGHLDEEGAEEYLDMLREEKRYQRDVY"
     gene            complement(17793..19079)
                     /locus_tag="ACFOCN_000405"
     CDS             complement(17793..19079)
                     /locus_tag="ACFOCN_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit 1"
                     /protein_id="HFC6969613.1"
                     /translation="MTAQHQAPLRFITAGSVDDGKSTLIGRLLYDSKALLSDQIKTLE
                     SGKSKGLKETIDFSILTDGLEAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRN
                     MVTGASTASAAVVLVDASQLDFGAQPLQLLPQTKRHSAILRQLNCPHIVVAVNKMDLL
                     DYSEDKFNAIVEAYRRLAEQLGLKDVHFVPVSALLGDNLVYPGGNMPWYRGEPLLVIL
                     ENLPGADETGRSAADFYFPVQLVVRQDADKADDFRGYQGRIERGSVAVGQTVRIEPNG
                     LTAEVSEIITPKGEVAQAFAGEAATLRLDRDIDVSRGDLFVDKNSPLAPQKHLEATLC
                     WFDERPLNTARKYLLKHGTQTVPAKVGEIESVLDVRTLEQEAGAESLKMNDIAKVRIN
                     LQKPVTATPYAENTAAGSFILIDEATYGTVAAGMIL"
     gene            complement(19118..20041)
                     /gene="cysD"
                     /locus_tag="ACFOCN_000406"
     CDS             complement(19118..20041)
                     /gene="cysD"
                     /locus_tag="ACFOCN_000406"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HFC6969614.1"
                     /translation="MTKTEPNNVQLDWLESESIHIIREVAAECENPALLFSGGKDSVV
                     LLALACKAFRLGSRPVKLPFPLVHIDTGHNYPEVIAFRDAQAAKLNARLIVGRVEDSI
                     AKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRDEEKARAKERIFSFRDEF
                     GQWDPKAQRPELWSLYNTRLHKGENMRVFPISNWTELDIWQYIARENLELPPIYYSHR
                     REVVRRRGLLVPVTPLTPKMPSETSEILDVRFRTVGDISCTCPVESTASTPAEIIRET
                     AVADISERSATRLDDQASEAAMEKRKKEGYF"
     gene            complement(20079..>20450)
                     /locus_tag="ACFOCN_000407"
     CDS             complement(20079..>20450)
                     /locus_tag="ACFOCN_000407"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HFC6969615.1"
                     /translation="SVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQSATRTELPF
                     AEYDAGRGIDKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRPVKAGE
                     DIRAGRWWWEDKNSKECGLHK"
BASE COUNT         4469 a         5273 c         5866 g         4842 t
ORIGIN      
        1 tataaaatcg gcatttcgga tgtaagcaat tttgaaggca gaatgcgcca tttggaaaac
       61 aacggctatg cgaacgttgc cggattggaa cgcatcctcg ccgtcaaaac cgacaattac
      121 aaagaaaaag aaaacctgct ccatgaaatt ttcagcaaaa gcaggatagg cgataccgaa
      181 ttgttcgccg tggacgaaaa ccttgtaaaa cgtttgtttt tatcgcttcg cggcgaaatc
      241 gtgtttccga aaaacgaaac ggcggaatcg gaatttgaaa aaagcgtcca cgaacgcagg
      301 caggaaggga atgccgggtc cggccgcaaa caactgcttg atttggtacg gcgcggacac
      361 cgggaatacc cttacgcgct gccccggctt ttggcgggcg cggcatccta caagccgaaa
      421 aaatcgaaaa tccgcctttt taaagaagca tatttcggca aaagcggcac gaggctgacc
      481 gacgaaattg cagacggcat ccatatttac acctgttttt cgcgggcgga tttggaaaaa
      541 gcctattccg aatatttgga acttttcaaa tccgaatcgg atgccgaagg cagaaagccg
      601 cagtaaggtg caaacagata ccgtacacgt tgaggagcag atatgatggg cgattccgtc
      661 atttattatg tagaacaggc agacaaaccg gtaaaccgtg ccggcgaacg cgcccgcaaa
      721 acattcaaat atttttggcg cgagcttttt tgggaacgcc gccgcatcat tcccgcctta
      781 gattttgcca tggtcaaagc cccttttttc caagacggcg aagacggcga aatttgcgaa
      841 catatgtgga tcgacgatat ttattttgac ggtctttaca tttatggcgt gctgaacaat
      901 gaacccggcg aactgaccaa tgtcgaacaa ggcgaaagcg tttgcgttcc ggttgacgac
      961 atcagcgact ggatgttcgt gtgcaacggc attccctacg gcggctttac catacaggca
     1021 atgcgtggac agatgacgga agaggagcgt accgaacacg atgccgcatg gggaatcgat
     1081 ttcggcgatc ccgggcaggt attgctggtg tatgaagaaa aagaacatcc cgaaaatctg
     1141 gaagagcatc cgatgtgccg gaactgtatt gacgattttc ggcaacagtt gtcccaaaat
     1201 ccggattttc tgcatgagca ggacgaagac ggctatacgc cgcttcatca tgaagccatc
     1261 gcaggaaatg cacttatggt tcaagccatg cttgaatacg gcgcaaatcc tgcctcaaag
     1321 acatcggaag gctataccgc cctcgatttt gcccgcctgg cgggctggca aaatgttgcc
     1381 gacctgctcg aaccgcgaca ttaggcggac agttttccga aaacgaacac aaacactttt
     1441 tacagaaaga caataaaaat gcccaaaatc accgtacttc cacacacgac attatgcccc
     1501 gaaggcgcgg ttatcgaaga cgcgcccgaa ggcaaaaccg tccttgacgt gctgctcgac
     1561 catgatatcg aagtcgatca cgcctgcgaa aaatcctgcg cctgcaccac ctgccacgtc
     1621 atcatccgca aaggtttcga cagtttggaa gaaccgaccg aattggaaga agacctgctc
     1681 gaccaggctt ggggtttgga agccgattca cgcctgagtt gtcaggcggt tgtcgccggc
     1741 gaggatttga ttgtggaaat ccccaaatac accatcaacc acgcgcgcga agaacactga
     1801 aaacaggccg tctgaagccg gcacgcttca gacggcattg ttgcgcggat aaggcgcaat
     1861 cgcccgaaaa caggcgttcg tacaggcgga actttcgatt ctatagtgaa ttaacaaaaa
     1921 tcaggacaag gcggcgagcc gcagacagta ccaatagtac ggcaaggcga ggcaacgctg
     1981 taccggttta aatttaattc actatatatt gatttttatc ggttttctga cggaacggat
     2041 tggtgcggca tccgaggcgg attactcggg cgcgatgcac gggtatttat cggttttgca
     2101 gccggaaaaa ccgccggcgg gttactttca gggcggcggt cgggcggtat gccggatagc
     2161 gttccacttt cgcttctata ttgattttga ttggttttct gacggaatga tccgatgcgg
     2221 catccgggac ggcttgtgtt tcttcctgcc cgcctgccgg atattcctgt acttgcacga
     2281 aaccgaaaga ggtggcggtg cggcggacaa gctcgagata gcgtccttca agctccggac
     2341 aggcggcgga cacgctttct gccgtaaccg tgaagccgcc gcccgacccg gcaaggcgtt
     2401 ccgcaatctg cgtgtagatg cgccaacgtt gggcgcgcaa cattgccgca tcgcaaccgg
     2461 cagccgcttt atccaaggca atcagaccgc gcctgctccg gtagtgaagg caaaccgtta
     2521 ctctggagag gatatgttgc ccgtccaata tttgatacag tttgcgtatc agcagaatca
     2581 ggcggtcaaa ctcctccatc tccgacaggg aatcaggatg gtcggaagcg gtataaacca
     2641 gtttggacaa ttttgcggca aacatattgt tcatcaatct tccttgtcgg ttgaaacccc
     2701 gctcttcggg gcggtagaat cagatttgtt tgggagggac aactcctccc agatcaggac
     2761 gacacatagg ctggtgcttg atgtgttgtc cggcgagttg aaacattcag ccatcctcaa
     2821 ggtgcggcag ttttgccgaa acatattcta cacggcttca atgccggacg ataaaaggaa
     2881 attcatatga aatggaccga cacccggcgt atcgccgaag aactctatga cctgcacggc
     2941 gaaaccatcg atcccagaac cgtgcgcttt acccaactgc gcgacctgat tatggcattg
     3001 cccgaatttg acgacgaccc cgcccgttgc ggcgaacgca tcctcgaagc cgtgcagcag
     3061 gcatggatag acgaggcgga ataagtttcg ggaatgccgt ctgaaatgcg gcggtacgcg
     3121 gttcgtgctt ctgtttgcag cgggaatggt tttaccagtc tccttttttc agcctgtcca
     3181 gttggcggcg gtcgcgcttg gtcggtctgc cgtcgggata ggcggaagtg atgcggctga
     3241 attggtcgag ctgtttgcgc tcttccctca atgttgccgt tttcgcgtcc tcttcataca
     3301 gaagccgcgc ctcggatgcc gggcggcgtt ggtggttcaa acctttaacc ttgattttat
     3361 agggaaggga attgagcgtc aggtcgataa tatcgccgat gtctatggtt ttactgtttt
     3421 tgaccttcga gccgtttact tgaaccctac ccagttcgat gtgcttttgc gcaagggaac
     3481 gggtcttgaa aaaacgtgcc gcccaaagcc atttgtccag ccgcatggcg gaagaatcgt
     3541 gcttgtcttt catacgattt tgtttgaaat aattgaattt gtttcaagtt tagcataaga
     3601 tacgccgcct ataactagta tatatgcact aatccactgt tttccatgct gtccgaacac
     3661 aaaaagaggg tatggaaaag ccgttttgga caataaatta actgcggaat atgcacaaat
     3721 agcgtatgat agcggcagaa tctgttgatg agagcttcat tctatgaaac ctgttttttt
     3781 ggattttgaa caacccatag ccgaactgac caacaaaatc gatgagctgc gtttcgtcca
     3841 agacgagtct gccgtcgata tttcggacga aatacaccgt ttgcagaaaa aaagcaacga
     3901 tttgaccaag tctattttca gtaaacttac acccgcccaa atttcacagg tttcccggca
     3961 tccgcagcgt ccctatactt tggattacat tgaggcactg tttaccgatt ttgaagaact
     4021 gcacggcgac cgccactttg ccgacgatta tgcgattgtc ggcggattgg cgcgtttcaa
     4081 cggacaaagc gtgatggtcg tcgggcatca gaaagggcgc gacaccaaag aaaaaatccg
     4141 ccgcaacttc ggtatgcccc gtcctgaagg ctaccgcaaa gccctgcgcc tgatgaagac
     4201 ggcagaaaaa ttcggcttgc ccgtcatgac ctttatcgat acgccgggcg cgtatcccgg
     4261 catcggcgcg gaagaacgcg ggcagtcgga agccatcggc aaaaacctgt acgaactgac
     4321 acgcctgcgc gttcctgttt tgtgtaccgt catcggcgaa ggcggttcgg gcggtgcgtt
     4381 ggcggtcgcc gtaggcgatt acgtcaatat gctgcaatat tcgacctatt ccgttatttc
     4441 ccccgaaggc tgcgcgtcta ttttgtggaa aacggcggaa aaggcggcgg atgcggctca
     4501 ggctttgggc attaccgctg accggctgca aaggctggac ttggtcgata ccgtcatcaa
     4561 agaaccattg ggcggtgcgc atcgggattt cgggcaaacc atgaaaaacg taaaagccgt
     4621 tttggaaaaa caactgcacg aagcgcaaag catcccgctt gccgatttgc tttcgcgccg
     4681 tttcgaccgc attatggctt acggcaaatt ttcggaacaa taattcaggt agaacaagca
     4741 gcaagcagtt tgtctgaaac tgcttgcttt ttctttatcg ggacggaacc gtgctgactt
     4801 tagatgcgtt tgagcaatgc ttgaaggatt gttttcctca aggtctgaat ggaaaaaaaa
     4861 cagcggtggc attaagcggc ggcttggatt ccgtggtctt gctgcacctg cttgtccgcg
     4921 ctgggaaacg ggcaggattt gtgccggagg cattgcatat ccatcacggc ttgagccccc
     4981 gtgccgacga ttgggcggat ttctgtcaaa actattgcga tatgctaggg gtggggctgg
     5041 aaacggttaa ggtctgcgtg gaaaaaaacg gtttgggcat cgaagcggcg gcgcggcaaa
     5101 agcgttatgc cgcgtttgcc gaaaaaggct ttgacatttt ggcgttggcg caccacaggg
     5161 acgatcaaat cgaaaccttt atgctggcgg tcgcgcgcgg cggcggtttg cgcgctttgg
     5221 cggctatgcc cgccgtccgc ccttttgggg aaaaaggcat catttggcgg cccttgctgc
     5281 ctttttcgcg ccaagatata tgggattatg cccaaaaaca cggtttgccg aatatcgagg
     5341 atgaaagcaa taccgatacg gcttatttgc gaaaccgctt ccggcaccgt attttgcccg
     5401 aactttcggc gcagattccc catttcgggc gacatgtgct gaacaatgtc cgcgctttgc
     5461 aggaagattt ggctttgttg gacgaggtcg tcgttcagga ctgccgttgg gtttgcgggg
     5521 ccggttattt cgatacggcg cggtggctga cgttttcccc gcgccggaaa acccatattt
     5581 tgcggcattt tctgaaggaa aacggcattc ccgtgccgaa tcagaatgcc cttgccgaca
     5641 ttgcccgggt tttgacggag gcaaaaaccg gacgttggaa cttgcaaggc tttgaattgc
     5701 atcattatgc aggcaggctg tttgtgttcc gacaggaaaa aacggataaa ctgcggtttt
     5761 tgaaagacag gcagataagc ggaaatttaa gggaaatatt gacggggcag ggatttgttt
     5821 taaaacgtca tccgtttggg cttcctgagc atcttttgga gcaggacgga attttgagga
     5881 cggtagcggc atcggatacg ttggctgtcg gcggcatcca taaggatgtg aaaaaaatcc
     5941 ttcaggggaa acgggttttg cctgtcctgc gcccaatttg gccgcttgtt gccgacagcg
     6001 gaaaccgtcc attggcgttg gcaaactgtt gtgcggattt ccaatattcg gtttcagacg
     6061 gcattttgcc cgtccatcct gactttccca ttttattttg ataatatcgc aaacagattt
     6121 cggcggcatt cagtcgggta ttgtccggtt gcatatttct aaaaggcttg tgaagtgaaa
     6181 cacatcagtt cgaccaataa tgaacacatc cggcacctgc accgcctgtt gtcgcaagga
     6241 aagttcagac ggcagtatgc ccaaaccgtt ttggagggcg tgcacctgct tcaggttttc
     6301 ctgcaatccg gcgggatgcc ggtcggggta tatattcccg agggcaaaat gccgtctgaa
     6361 gaaatccgca ggctgagggc ggttgtgccg gaaggcagga ttttttccgt ttcagacggc
     6421 atattgaaaa aaatcagcag cttgagttgt gcagacgata tacttgcact gattgatatc
     6481 ccattgggcg gaaccttgcc ggacaaaggc gactgtgtgg ttttggacgg cgtgcaagat
     6541 ccgggcaatg tcggcaccgt cttacggagt gcggcggcgg caggggtagg tacggtcgtt
     6601 ttgggcaggg gttgcgcgga cgcgtggtcg cccaaggtat tgcgcgcggg gatgggcgcg
     6661 catttcttgt cgggcattta tccgcaggcg gatttggaaa tatggttggc gagctataaa
     6721 ggccgtgtgt ttgccaccgc cttgcgcgag gaaaagcagg tggttttgta cggcgaagat
     6781 ttgtgcgaac cgacagcctg ggtgtttggc aacgaaggcg cgggggtcgg taaagcggtt
     6841 ttggacaggg cggacaagtg tgtcaggatt ccgatgcacg atgcaaccga gtctttaaat
     6901 gtcgcgatgg cggcgacaat ctgcctgttt gaacagatgc ggcagcggtc ggcgtattga
     6961 ggaaaagaaa tgccgtctga aaaaatctat tacggcgtat tgattttctt atgtatcgct
     7021 tctatgctgc tgtcgccgtt tttttatgcg ggtgctttga agcccaagaa ggcggcattg
     7081 cggaaggacg ggcagtggaa actcatctta ttgtccaata ccgtggcggc ggcggttttg
     7141 ttttggatgt ggtggaaatg gttttgacag atattgctca aaatcgtgct aatggaatcc
     7201 gaacaaataa agaatttggt aaaaaatttg ttaaatcaac gaattaaagt tttgtggaaa
     7261 acaaaacagc tctaagcaaa tagggcgttt gtcggtaaat acggaagagt tgcggcatta
     7321 tcgggcatct ttaacaagta gtgccggctt ggcaggcaat tggtttttat gggcagtttg
     7381 caaaattgca gatataaaat tgcgaatcgg ttaaagcgtg aggataccat gaaaaattgc
     7441 aaattttttt atgatccgac aagggcaatc tatgatagcg gtgcagatta cttaactagg
     7501 gaaaaacata gattagtcgt tatcgcaaat agtgcttggg ggctattgct taatttatct
     7561 tgttattatg acgaggtttt ggaaaagcgg aaaataccgt tcggcaaaca ggaaattgat
     7621 gacgatatgg acaaagtgtc cgcccataag cggaagttta aagatatttc tgaaatcaaa
     7681 gtaggggatg gttgggaata cccgttcaat tatgagcagg gaatgaaaga attagatgaa
     7741 gtgctattga aatacattcc cttttttgaa gaagaacgat aaaggaggtt gatatgcgcg
     7801 tatctaaaat aattggaagt atgttgcttg ttacagcggt tcagaccgta ttttcggcaa
     7861 atgtttacgc gtgccgccat aatggtaaaa ccagttacag ccaaactccg ggaaaacatt
     7921 gtaccaacgc gggtttgggg cgggacctgg tgtacagttc ggtcaggcct gccgtgaaag
     7981 acagggcgga agacgcaggg gctgacgatc atttggattc ggtgagggac gaacacgtcc
     8041 aaaatccgag agagaatacg cataaggatg cttcgaatac cggtgcaaag acgcattgat
     8101 tgaaaccgaa tcagccatga cggcgttgaa taatagaatt tgaacgatta gggaactctg
     8161 atgaaacaca tccacattat cggtatcggc ggcacgttta tgggtgggat tgccgccatt
     8221 gccaaagaag cagggtttga agtcagcggt tgcgatgcga agatgtatcc gccgatgagc
     8281 acccagctcg aagccttggg cataggcgta cacgaaggct tcgacgcggc gcagttggag
     8341 gaatttaaag ccgacgttta cgtcatcggc aatgtcgcca agcgcgggat ggatgtggtt
     8401 gaggcgattt tgaaccgcgg gctgccttat atttccggtc cacaatggct ggctgaaaac
     8461 gtgctgcacc atcattgggt actcggcgtg gcggggacgc acggcaaaac gaccaccgcg
     8521 tctatgctcg cgtgggtttt ggaatatgcc ggactcgcac cgggcttcct tattggcggc
     8581 gtaccggaaa atttcggcgt ttccgcccgc ctgccgcaaa cgccgcgcca agacccgaac
     8641 agccaatcgc cgtttttcgt tatcgaagcc gacgaatacg acaccgcgtt tttcgacaaa
     8701 cgctccaaat tcgtgcatta ccgtccgcgt accgccgtgt tgaacaatct ggaattcgac
     8761 cacgccgaca tctttgccga cttgggcgcg atacagaccc agttccacta cctcgtgcgt
     8821 accgtgccgt ctgaaggctt aatcgtctgc aacggacggc agcaaagcct gcaagatact
     8881 ttggacaaag gctgctggac gccggtggaa aaattcggca cggaacacgg ctggcaggcc
     8941 ggcgaagcca atgccgacgg ctcgttcgac gtgttgctcg acggcaaaac ggccggacgc
     9001 gtcaaatggg atttgatggg caggcacaac cgcatgaacg cgctcgccgt catcgccgcc
     9061 gcgcgtcatg ccggtgtcgg cattcagacg gcctgcgaag ccttgggcgc gtttaaaaac
     9121 gtcaaacgcc gcatggaaat caaaggcacg gcaaacggca tcaccgttta cgacgacttc
     9181 gcccaccacc cgaccgccat cgaaaccacg attcaaggtt tgcgccaacg tatcggcggc
     9241 gcgcgtatcc tcgccgtcct cgagccgcgc tccaacacca tgaaactcgg cacgatgaag
     9301 tccgccctgc ctgtaagcct caaagaagcc gaccaagtgt tctgctacgc cggtggcgtg
     9361 gactggaacg tcgccgaagc cctcgcgcct ttgggcggca ggctgcacgt cggcaaagac
     9421 ttcgatgcct tcgttgccga aatcgtgaaa aacgccgaag caggcgacca tattttggtg
     9481 atgagcaacg gcggtttcgg cggaatacac ggaaagctgc tggacgcttt gagatagccc
     9541 gggcgatgcc gtctgaaagc ccttcagacg gcatcgtccg gctgcgcggc acaaaggcgg
     9601 aaaaaccgtt tgccccgtat tttcaaacgc gttacacttg ccgccgctgt tttcagccat
     9661 ttgattaccc gcaaccgccg tcattgcgcc ggcggtttgc ctgtcagcgt cattgcgccg
     9721 ctgtaaatac gaaagaacac attatgaccg tatcccccgt cgccttgcgc cgtaagaccg
     9781 agtgcaagcc tcatcccacc gcgcgctatt ggaaaaaatg cgatgtcgag gcacttttcg
     9841 gactgccgtt tttagaactt gtccatcagg cggcagaagt ccaccgccaa aatttcaacc
     9901 cgcgcgaaat ccagctttcc acgctgttgt ccatcaaaac cggcggttgt cccgaagatt
     9961 gcgcctactg tccgcaatcg gcgcaccaca ataccaatct gggcaaagag cagatgatgg
    10021 atgtggatga aatcgtcgaa aaagccaaaa tcgccaaatc gcgcggcgca agccggtttt
    10081 gtatgggcgc ggcatggcgc ggccccaaac ccaaagacgt ggagacggtt tccgcaatca
    10141 tcaaagccgt caagggcttg ggtatggaaa cctgcggcac gttcggtatg ctcgaagaag
    10201 gtatggcgga agacttgaaa gaggcgggct tggattatta caaccacaac ctcgacaccg
    10261 accccgaccg ctacaacgac atcatccata cacgccggca tgaagaccgt atggacacct
    10321 tgggcaaagt ccgcaacgcc ggtttgaaag tctgctgcgg cggcatcgtc gggatgaacg
    10381 aaacccgcgc cgaacgcgca gggctgattg ccagcctcgc caacctcgac ccgcagcccg
    10441 aaagcgtgcc gattaaccgg ttggtcaaag tggaaggtac gccgcttgcc gatgccgagg
    10501 atttggactg gacggaattt gtccgcacca tcgccgtggc gcggattacg atgccgcaaa
    10561 gttatgtccg actgtcggca gggcgcagca atatgccaga agcgatgcag gcgatgtgct
    10621 ttatggcggg cgcgaactcg attttttacg gcgacaagct gctgaccacg ggcaatccgg
    10681 atgaagacgg cgacagaatc ctgatggaaa agctcaacct gtatccctta cagtttgagc
    10741 tggaaggcga ggtcgccgaa gtggaaaaag cctctgggat taaagtggat tattgacgat
    10801 tgcaaaaatg ccgtctgaaa cccgaaaaaa ggctttcaga cgacatttgt tcggacggta
    10861 tttccaatat ctttttaccg gcgcgtgatg ttgccgtcgg gcgagacatc cagcccgttc
    10921 ccgttgggga agtcgctgcg gttcagataa ataatccgcc cgataacggt ttttcagggt
    10981 cgattttggg gattttatcg tcggcttggg taatagggat gatagttccg gaaataaatt
    11041 taccctgttt gttggtgata attttgaaaa tcggcgcaat gccgctgatg ccggaggtgt
    11101 tgattgcgcc gtaggtggca aagttgccgc cgctgtaaga gatgaagcgg tcgcggtaaa
    11161 gttcgacggc gcgtgtaacg tgcggcccct gcccgaatac gacatccgcg ccggaatcga
    11221 cggcaagccg tgcaaactcg acgacgttgc ccctgttttc cccatagaag atttcggtat
    11281 cgaacggcag gtgttccgcc tgtttccctt cccgccgccg tggaacatta caatgacgat
    11341 gtcggctttc tgtttggttt tggtaatccg ttttctaact ttggcataat cgttcagttt
    11401 gacggcggca aggttggggg cgaaggagac gaagccggat cttacgccgt ttttcttcag
    11461 gatggcggtt tcaaacctgt tttcgatgcc cgaatatttg atgttcaatt cgtcaaggtt
    11521 cgccctttat gccgtttccg caccgcaaac cgccggggtc aagccctcgg cgcatcctgc
    11581 cggaacggaa tccccgtgct gccgattgac ggttcaaacc ccgcgcccgt ttcaaatacc
    11641 ggcgatgtgg acggacagga tgcgcctgac gaaaagacag ccgataccgt ttccattatc
    11701 ggcgtgggcg acattatgct cggcagcaat tatccggtcg attacctgcc cgataccaat
    11761 attctgaaaa acgtcgaatc tgccttgcaa gacgcggaca ttaccgtcgg caacctcgaa
    11821 ggcacgctgt ttgacgaagg cggtacgccg aaaaaatgtg caacccccca aaatatgcta
    11881 tgcattccga acgccctccg catacgggca ataccttgcc gacgcgggat tcgactacct
    11941 cagcttcgcc aacaaccaca gcaacgactt cggcgcgcaa ggcatcacgg caacggcggc
    12001 gagcggcagc tcttttacat actcgatcgc gctaaagccg ctgccgataa cgaggccaaa
    12061 attgcggaaa ataccgccat cgcccagata aatttgtcca tcatcagacc tttactgttc
    12121 agacgagaca gcatttgccg cacgttttgg ggcttatctt tcgatttgcg ctacgtcgcg
    12181 caccgcgcct ttgtcggcgg aagtcgccat cgcgccgtaa gcacgcaggg ctgcggagac
    12241 gtagcggtcg cggttttccg gtttccacgc tttgctgccg cgcgcttcca tttcggcacg
    12301 gcgggcggca agctcttcat cggaaatggc aaggtggatg ctgcggttgg ggatgtcgat
    12361 ttcgacggta tcgccttcgt gtaccaaacc gatcgcgcca ccttccgccg cttcgggcga
    12421 ggcgtgtccg atggacaaac ctgatgtgcc gccggagaag cgtccgtcgg ttaagagagc
    12481 gcaggctttg ccgaggcctt tagatttcag gtaggaagtc ggatacagca tttcctgcat
    12541 gcccgggccg cctttcgggc cttcgtagcg gatgatgacg atgtcgccgg cgacgatttg
    12601 gttgcccaaa atgccttcta ctgcgtcttc ttggctttca aacacgcggg cgcggccggt
    12661 gaatttgagg atgctctcgt ccacgcctgc ggtttttacc acgcagccgc gctcggcgat
    12721 gttgccgaac aagaccgcca aaccgccgtc ttgcgagtag gcgtgtgcca cgtcgcggat
    12781 acagcctttt tcgcggtcga ggtcgagggt tttccacata cggttttgcg agaacgcttg
    12841 ggtggtgcgt acgccgccgg gcgcggcttt gaagcgttcg atggcgcggg tgttttcagg
    12901 gttggttatg tcccattttt caatcgcgtc tttcagcgtc ggtgcgtgga tagtgtgcac
    12961 gtcggtgtgc agcttgcccg ctttgtccaa ttctttcagg atggcgaaaa tgccgccggc
    13021 gcggtgcacg tcttccatat agtagtcgtg gttgttgggt gcggttttgc agatgcaggg
    13081 cacaacgcgg cttaagcggt caatgtcggc cattttgaaa tcgacaccgg cttcgttggc
    13141 aacggccaac aggtgcaaaa tggtattggt gctgccgccc atcgcaatat ccatcgtcat
    13201 agcgttttca aacgcttttt tggtggcaat gctgcgcggt aacacggttt catcgttttg
    13261 ctcgtaatag cgtttggtga tttcgacaat catacggccg gcttcgagga acagttcttt
    13321 gcggccgacg tgggtcgcca aatacgaacc gttgccgggt agggacagac cgagtgcttc
    13381 ggtcaggcag ttcatcgagt ttgccgtaaa catacccgaa cacgagccgc aggtcgggca
    13441 ggcgttttgt tcgacttcct cgacttgccg gttgctgaca ttgtcgtccg ccgattcaat
    13501 catcgcgtca atcaagtcca aacggcgttc gggctggatg tttgccacgc cgataacttt
    13561 acctgcttcc atcggaccgc cggaaacgaa gatggtcggg atgttcaggc gcatcgcggc
    13621 aatcagcatg cccggggtga ttttgtcgca gttggaaatg cacaccagcg cgtcggcgca
    13681 gtgggcattg accatatatt cgatggagtc ggcaatcaaa tcgcggctgg gcagggaata
    13741 cagcataccg ctgtgtccca tagcgatgcc gtcgtcgatg gcgatggtgt tgaattcttt
    13801 ggcgatggcg cccgcctttt cgatttcgcg ggcaaccagc tggcccatat tgtgcaggtg
    13861 gacatggccg ggcacgaatt gggtgaagga gttggcaacg gcgatgatgg gcttgccgaa
    13921 gtcggtttcc atcacgccgg tggcgcgcca caatgcacgt gcgcccgcca tattgcggcc
    13981 gtgggtggag gttttggagc ggtattctgg catagtgtgt ttccttgtct gctatgccgt
    14041 ctgaacggca aaaggctttc agacggcatt tttgttgtgt tttgaaatga aaaaaaaggt
    14101 attttatacc aagtatcgga attttgcgga atggaaacgc gtgcggcaaa aaaggacatc
    14161 ccccgcagga atgcggggga cggtttcagg cgcgcgcaat cgggacggct ttggatgcgt
    14221 cccaaaaatc gacgggcgca tccaacacgg gtttgacgat gcccgtccgt atggcgaaat
    14281 cgccgaaacc ttcgtcggta tcgcgtcccg ccgcccattt gccgatcagg tcgtctaatt
    14341 cggaaaggat ttccggcagg gtaatgtttt ctttgtagag tcgggggatg cgtacgcctt
    14401 cgcggtcgcc gccgatgtgg aggttgtagc gtccgacggc tttgccgacc agtccgattt
    14461 ccgccaacat cgcccgtccg cagccgttcg ggcagccggt aatgcgggta acgatgtagt
    14521 cgtccgacgt gccgtgtttc gccataatct tatccagctc gccgatgaag tccggcagca
    14581 cgcgttcggc ttccgccatt gccagcgggc aggtcgggaa ggaaacgcac gacatcgcat
    14641 tttcacgcag tttactgaca tcgttgcgga ttaatccgta tgttcgggca agttcttcga
    14701 tttttgcttt gtctgcttcg gcgacatttg ccacgatgag gttttggttg gcggtgatgc
    14761 ggaaatcgcc tttgtggatt ttggcgattt ccaacacgcc ggtcagcagc tgtttcccgc
    14821 cttcgtcaac caaacgcccg ctttcgatga aaagggtcaa atgccagttg ccgtctatgc
    14881 ctttcaccca gccgatacgg tcgccgcgcc cggtaaattt gaacgggcgt atgggttcga
    14941 acggcatacc catacggcgt tcgacttccg cgcggaagtt gtccaagccc atattttgaa
    15001 tggtgtagcg ggtgcgggcg tttttgcggt cgctgcggtt gccgaagtcg cgctgcgtgg
    15061 ttaccaccgc ttcggcggcc ttcagcgcgt gttccggagg cacgaaaccc agttccagtg
    15121 aaatgttcgg ataggttttg gtgttgccgt gttccatcga aagcccgccg cctgccaaaa
    15181 cattgaagcc ggcaagctgt ccgttaccgt ctgaaacggc gacgaaatcc aaatcgttgc
    15241 cgtagcagtc cacatcgttc aagggcggga tgacgactgc ggttttgaat ttgcgcggca
    15301 gataggtttt gcccaaaatc ggctcgtctt cttgaaggaa gtcgtcggaa ctttgaactt
    15361 ttttgccgtc cacccacaca tccagataac cgcgcgtgcg cggcagcaag tgttcggaaa
    15421 tctttttcgc gtattcgtaa gcctgccggt gcagttcgga ctcgatcggg ttggacgtgc
    15481 aaagcacgtt gcggttcata tccgccgccg tggcgatgga atccaaaccc agtttgtgca
    15541 agaggcggtg catcgtctgc aacttggctt tcggcacgcc gtgaaattgg aaggtttgcc
    15601 ggttggtcag ccggatggag cggtaatgac tgttttcccg ggcaaatttg tccagttcta
    15661 tccattggga cggtttgatg atcccgcccg gcagccggca gcgcaaaagc ataaatttca
    15721 agggctcgag ttttgcctcg gcgcgttcgg cgcggatgtc gcggtcgtcc tgctcataca
    15781 taccgtggaa gcggatgagt tggaagttgt cgcctttgaa gccgcccgtg agcgggtctt
    15841 tcaaatcgtc caaaatcgtg ccgcgtaaaa aattgctttc ggttttcaga cgttcgttgt
    15901 cggatagcgg tttttcttgc cacgccaaac cttttgtctt ggtctgtacg gtcattttgt
    15961 gttcctcccg attatattta atcaataaac atcacgctga tagcgttttt cttcgcgcag
    16021 catatccaaa tattcttctg cgccctcttc gtccaaatgt cctgccccga taatcacatc
    16081 cagcaaggcg gcttccacgt cttttgccat ttttgccgca tcgccgcaca catagatatg
    16141 cgcgccttcc tgcagccatt gccaaagtcc ttccgcctgt tcgcggattt tgtcctgcac
    16201 atagattttt tcttcctgat cgcgggacca ggcgaaatcg tacctgtgca ggaaaccgtc
    16261 tttggcaaac tgctgccatt cggtttgata gagaaaatca cgggcaaaat gcggattgcc
    16321 gaaaatcagc cagtttttgc cttccgcatt ttctgcggca cgttgttgga cgaaggcgcg
    16381 gaacggtgcg acgccggtgc ccgagccgat catcacaatc ggcttgcggc tgtcttcggg
    16441 cagcctgaag ccgtcgttgc gttccacaaa cacgcgcacc gtgccgtcct cttccagccg
    16501 gtcggcaagg aaacccgatg cgccgcccgc cctggcgcgc ccttcgtgtt cgaaacgcac
    16561 cgcgccgacg gtcaggtgca cttcgtcccc cacttccgcc tgcgacgagg aaatcgaata
    16621 caggcgcggc gcaagcgggc gcagtaggcc ggcgaattgt tccgccgtca gttttgccgg
    16681 gaagcggtgc agcacatcgg caatcggcgt gctttgcaca aagccttgca aaacggcgtt
    16741 gtcggcagca atacggtcga gttcgtcatc atcggcgaac ggggcatagc ctttgacaaa
    16801 ggcgggggtg ttttgcgtga gttcaaaatg ggataacagt gcggaggcaa ccggcagggt
    16861 ttttccgccc gcctgtattt ccgttgccgg atcgatgccg agcaggtcta ggatttccct
    16921 gaccagtgcc ggatcgttgt caaaccaaac gccgagcgcg tcgcccggga ggtagtgcaa
    16981 atccgaaccg ctcaaatcga tttcgatgtg gcgcacgtct ttatcggatt ggcgggcggt
    17041 gattttctga ttggccagca gggcggcggg aaaggggtct gccttgcagt acctgccatc
    17101 cggtgccgtc tgaaggccgg cggggggcgt tgtctgcggc gcgggcgttg cccggttttt
    17161 tgcggcttct tcttttaagc gcgcgacaat gcggcctgtc catccgtctg cggcggcggc
    17221 aaagtccaaa tccgcatcaa cgcgttcgag caggcgtttt gcgcccaatt cttcaaaacg
    17281 ccggtcgaaa tctttgcccg cccggcagaa attcggatag gaactgtcgc ccaaacccag
    17341 tacggcaaat tggagtttgt ccaatttcgg ggcttttttg ccgttcagca gtttgtgcag
    17401 cacgacggct tcttccggcg gttcgccttc gccctgggtg gacgtaacca gcagcaggcg
    17461 gcgttcgtcg gcgatgtttt tcgccttata gtctttcagt tcggcgcgcc tgacttggat
    17521 gccggcggct tccaggctgt ccgacgcttt gtcggcaacg gatttcgcat tgccggtttg
    17581 cgaggcggaa aggacggtta cggaaaaagg ttctgccgcc ggcaatgccg tctgaagcgc
    17641 gggcagccct gcggatgccc cgtttcctgc ttttgcccaa gcgtagccgg acagccacgc
    17701 ccattgtgcc gcgtccagcc ccgacaggag ctgcgtgatt tcgggcggca gaggcggtaa
    17761 tggcggattt gtgttctgca tatcgtgttc actcataaaa tcatacctgc cgcaacagtg
    17821 ccgtatgtcg cttcgtctat caggataaac gaaccggcgg cggtgttttc cgcataaggc
    17881 gttgccgtaa cgggtttttg aaggttgatg cggactttgg cgatgtcgtt catcttcaag
    17941 gattccgcgc cggcctcttg ttccagcgtg cggacatcta aaacgctttc aatttccccg
    18001 acttttgccg gcacggtttg cgtgccgtgc ttgagcaggt atttgcgcgc ggtgttgagc
    18061 ggacgttcgt caaaccagca aagcgtggct tccagatgtt tttgcggggc gagcggggaa
    18121 tttttatcga caaaaaggtc gccgcgcgaa acatcgatgt cgcggtccag ccggagggtt
    18181 gccgcctcgc cggcaaaagc ctgcgccact tcccctttcg gcgtgatgat ttcggacact
    18241 tcggcggtca gcccgttcgg ttcgatgcgg acggtttgcc cgacggcgac cgaaccgcgt
    18301 tcgatgcgcc cctgatagcc tcggaaatca tcggccttgt cggcatcttg gcggacgacc
    18361 agttggacgg ggaaataaaa atcggcagcg gaacgaccgg tttcgtccgc ccccggcagg
    18421 ttttccaaga tgaccagcag cggttcgccc cgataccacg gcatattgcc gccggggtaa
    18481 acgaggttgt cgcccaagag tgcggacacc ggtacgaaat gcacgtcttt caaaccgagc
    18541 tgttcggcaa gtcggcggta tgcctccaca atggcgttga atttgtcttc gctgtaatcc
    18601 agcaggtcca ttttgttgac cgccaccaca atatgcgggc agttgagttg gcggaggatg
    18661 gcggaatggc gtttggtctg cggcagaagc tgcaagggct gcgcgccgaa atccagttgg
    18721 gatgcgtcaa ccagcacgac tgccgccgaa gcggtgcttg cgcccgtaac catattgcgc
    18781 gtgtattgtt cgtgccccgg cgtgtcggcg atgatgaatt tccgtttcgc cgtggaaaaa
    18841 tagcggtatg ccacatcgat cgtaatgccc tgttcgcgtt cggcttccag tccgtcggtc
    18901 aggatggaga agtctatggt ttctttcaaa cctttgcttt tgccggattc caaggttttg
    18961 atttggtcgg acagcagggc tttgctgtcg tagagcagtc gtccgatcag ggtgcttttg
    19021 ccgtcatcga cgctgccggc ggtaatgaag cggagcgggg cctggtgttg tgccgtcata
    19081 ttttcttcct catatctgct taaagggttt ttgaaattta gaaatagcct tcttttttgc
    19141 gtttttccat tgccgcctcg cttgcctgat cgtctagccg ggtcgcgctg cgttcggaaa
    19201 tgtcggcaac cgccgtttcc ctgataatct ccgccggcgt ggacgcggtg ctttctaccg
    19261 ggcaggtgca gctgatgtcg ccgacggtgc ggaagcggac atcaaggatt tcggaggttt
    19321 cagacggcat tttcggggtg agcggcgtta cagggaccag cagccccctg cgtctgacca
    19381 cttcgcgcct gtggctgtaa taaatcggcg gcagctcgag gttttcgcgg gcgatgtatt
    19441 gccagatgtc gagttccgtc cagttggaaa tcgggaagac gcgcatattt tcgcctttgt
    19501 gcagcctggt gttgtacagc gaccacagct cggggcgttg cgccttcgga tcccattgtc
    19561 cgaactcgtc gcggaacgag aaaatccgtt ctttggcgcg ggctttttct tcgtcgcgcc
    19621 gcgcgccgcc catcagcgcg tcaaagccgt ttgcctcgat ggtttccaac aaggtaaccg
    19681 cctgtgccgc attgcgcgaa tcggtttctt tgcgtaagac caccgtgcct ttagcgatgg
    19741 agtcttccac gcgccccact atcaggcggg cattgagttt tgccgcctgc gcgtcgcgga
    19801 aggcaatcac ttcggggtag ttgtgccccg tgtcgatatg caccagcggg aagggcagtt
    19861 ttaccggcct gctgcccagc cggaaggctt tgcaggcgag ggcgagcagg accacggaat
    19921 ctttgccgcc ggaaaagagc agggcggggt tttcgcattc tgccgccact tcgcggataa
    19981 tgtggatgga ttcggattcc aaccagtcga gttggacgtt gttcggttcg gttttcgtca
    20041 tacgatattc cttatttctt ctgtttgatc cttatgaatt atttgtgcag cccgcattct
    20101 ttgctgtttt tatcttccca ccaccaccgc ccggcgcgga tgtcttcgcc ggccttgacg
    20161 gggcgggtgc aggggtcgca gcctatactg ggaaagcctt gccggtacaa atcgttgtaa
    20221 ggcacattgt tggcaaggat gtatgcccac acgtcgtgtt ccgaccagtc gaaaatcggg
    20281 ttgtatttat cgatgccgcg cccggcatca tattcggcaa acggcagttc cgtgcgtgtg
    20341 gcggactgtt cgcggcgttg cccggtaagc caagcatccg ccccggcaat ggcgcggtcg
    20401 agcggttcgg tttttcggat gcggcagcat tcgcggcgcg cttcaacgct
//
LOCUS       DAXIFD010000014        19637 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.014, whole genome shotgun sequence.
ACCESSION   DAXIFD010000014 DAXIFD010000000
VERSION     DAXIFD010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19637
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.014"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1592
                     /gene="ppk1"
                     /locus_tag="ACFOCN_000408"
     CDS             <1..1592
                     /gene="ppk1"
                     /locus_tag="ACFOCN_000408"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HFC6969616.1"
                     /translation="LNFAVELDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHG
                     FVFLSSILHAHVGKLFPGMNVKGCHQFRLTRDSDLTVDEEDLQNLRAAIQNELHDREY
                     GDGVRLEVADTCPAYIRDFLLAQFKLTAAELYQVKGPVNLVRLNAVPDLVNRPDLKFP
                     THTPGRLKALGKTASIFDLVRQSPILLHHPYQSFDPVVEMMREAAADPDVLAVKMTIY
                     RTGTRSELVRALMKAALAGKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGY
                     KVHAKMALVIRREDGVLKRYAHLGTGNYHQGTSRIYTDFGIITADEQITADVNTLFME
                     ITGLGKPGRLNKLYQSPFTLHKMVIDRIARETEHAKAGKPARITAKMNSLIEPTVIEA
                     LYRASAAGVQIDLIVRGMCTLRPGVKGLSENIRVRSIIGRQLEHARVYCFHNNGADDT
                     FISSADWMGRNFFRRIETAAPIAAPELKKRVIREGLEMALADNTHAWLMQPDGGYIRA
                     APAEGESEADLQNDLWTLLGG"
     gene            1617..1886
                     /locus_tag="ACFOCN_000409"
     CDS             1617..1886
                     /locus_tag="ACFOCN_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969617.1"
                     /translation="MPSETFPFQTAWFYSNLNRADWNQKHTFAIPAQALPLYAPNPNP
                     PHSRRHCLSDSRTKPRIRLHGSGHISNTGIVLRKTVKSASASQYI"
     gene            complement(1855..2958)
                     /gene="dnaN"
                     /locus_tag="ACFOCN_000410"
     CDS             complement(1855..2958)
                     /gene="dnaN"
                     /locus_tag="ACFOCN_000410"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HFC6969618.1"
                     /translation="MLILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTK
                     LLATDLEIQIDTAGPEGGADDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAG
                     KSRFALQTLPAADFPMMNVGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLL
                     MQVEGSQLRLVATDGHRLAYAACAIDADLPRAEVILPRKTVLELFKLLNNPDDPIQIE
                     LLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILAN
                     EKFRGARLFLQSGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS
                     DDMQLAFGDANRSTLFTVPNNPNFKYIVMPMRI"
     gene            complement(3038..4594)
                     /gene="dnaA"
                     /locus_tag="ACFOCN_000411"
     CDS             complement(3038..4594)
                     /gene="dnaA"
                     /locus_tag="ACFOCN_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HFC6969619.1"
                     /translation="MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGEEGGVWVVYGK
                     NQFACNMLKSQFAGKIEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHA
                     GSEEMPVQEVLLDELPSEEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESEV
                     LAKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPF
                     FLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQY
                     KQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKS
                     RFSWGLTLELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNR
                     VGASSRFMNRPVIDIDLARTALQDIIAEKHKVITADIIIDAVAKYYRIKISDVLGKKR
                     TRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQD
                     YEKLLILIQN"
     gene            4887..5021
                     /gene="rpmH"
                     /locus_tag="ACFOCN_000412"
     CDS             4887..5021
                     /gene="rpmH"
                     /locus_tag="ACFOCN_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003816025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HFC6969620.1"
                     /translation="MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLAV
                     "
     gene            5024..5389
                     /gene="rnpA"
                     /locus_tag="ACFOCN_000413"
     CDS             5024..5389
                     /gene="rnpA"
                     /locus_tag="ACFOCN_000413"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HFC6969621.1"
                     /translation="MDYRFGRQYRLLKTDDFSSVFAFRNRRSRDLLQVSRSNGNGLDH
                     PRIGLVVGKKTAKRANERNYMKRVIRDWFRLNKNRLPPQDFVVRVHRKFDRSTAKQAR
                     AELAQLMFGNPATGCRKQA"
     gene            5454..5675
                     /gene="yidD"
                     /locus_tag="ACFOCN_000414"
     CDS             5454..5675
                     /gene="yidD"
                     /locus_tag="ACFOCN_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HFC6969622.1"
                     /translation="MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKK
                     YGAFKGGRLAIKRIARCHPLGGHGHDPVP"
     gene            5847..7484
                     /gene="yidC"
                     /locus_tag="ACFOCN_000415"
     CDS             5847..7484
                     /gene="yidC"
                     /locus_tag="ACFOCN_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HFC6969623.1"
                     /translation="MDFKRLTAFFAIALVIMIGWEKMFPTPKPVPAPQQAAQQQAVTA
                     SAEAALAPATPITVTTDTVQAVIDEKSGDLRRLTLLKYKATGDENKPFILFGDGKEYT
                     YVAQSELLDAQGNNILKGIGFSAPKKQYSLEGDKVEVRLSAPETRGLKIDKVYTFTKG
                     SYLVNVRFDIANGSGQTANLSADYRIVRDHSEPEGQGYFTHSYVGPVVYTPEGNFQKV
                     SFSDLDDDAKSGKSEAEYIRKTPTGWLGMIEHHFMSTWILQPKGRQSVCAAGECNIDI
                     KRRNDKLYSTSVSVPLAAIQNGAKAEASINLYAGPQTTSVIANIADNLQLAKDYGKVH
                     WFASPLFWLLNQLHNIIGNWGWAIIVLTIIVKAVLYPLTNASYRSMAKMRAAAPKLQA
                     IKEKYGDDRMAQQQAMMQLYTDEKINPLGGCLPMLLQIPVFIGLYWALFASVELRQAP
                     WLGWITDLSRADPYYILPIIMAATMFAQTYLNPPPTDPMQAKMMKIMPLVFSVMFFFF
                     PAGLVLYWVVNNLLTIAQQWHINRSIEKQRAQGEVVS"
     gene            complement(7565..8275)
                     /locus_tag="ACFOCN_000416"
     CDS             complement(7565..8275)
                     /locus_tag="ACFOCN_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFC6969624.1"
                     /translation="MSPVLYLIPTPLGTPDTPCLLPHEQQAIVGLTDFVVEAEKTARA
                     HLKHLGVTTPIRELNLQTLNEHTDLKTLPELLKPLQEGRSMGIVSEAGCPAVADPGAN
                     LVALAHKHGFEVRPLVGPSSLLLALMASGANGQSFAFKGYLPSEKNERIQAFRALEQR
                     SRQCGETQIFIETPYRNDALLADAVENLHPETRLCTATDLTLPTQEIISQTIVQWRKR
                     KEMPNLKKRPTIFVMYAG"
     gene            complement(8337..8927)
                     /locus_tag="ACFOCN_000417"
     CDS             complement(8337..8927)
                     /locus_tag="ACFOCN_000417"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HFC6969625.1"
                     /translation="MGLELPLILGTSSVFRREQMERLGIAFQAASPDFDETPMLGESA
                     PQTALRLAEGKARSLTGRFPEALIVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGRE
                     IEFYSAIVLLNTVTGRMRRHIDKTVVVMRQLDELHILRYLEREPDAVYCSCALKSEDL
                     GALLIERIESTDPNALIGLPVFRLVDFLKNEGVEVL"
     gene            9075..9578
                     /locus_tag="ACFOCN_000418"
     CDS             9075..9578
                     /locus_tag="ACFOCN_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HFC6969626.1"
                     /translation="MSDPNLIDLEIFAAEGQNLQGSFLLEELDERVSSHDYPADRQTK
                     ISFTLTGGRDRLQRLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEESLDES
                     MLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDCGDNGTLEEVNRDKPNPFAV
                     LAGLKSN"
     gene            9612..9791
                     /gene="rpmF"
                     /locus_tag="ACFOCN_000419"
     CDS             9612..9791
                     /gene="rpmF"
                     /locus_tag="ACFOCN_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011765354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HFC6969627.1"
                     /translation="MAVQQNKKSPSKRGMHRSHDALTAPALSVDSTTGEVHRPHHISP
                     NGMYRGRKVVKAKGE"
     gene            9966..10493
                     /locus_tag="ACFOCN_000420"
     CDS             9966..10493
                     /locus_tag="ACFOCN_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HFC6969628.1"
                     /translation="MKQKIWYTYDDIHRVIKALAEKIRNADIKYDAMIAIGGGGFIPA
                     RMLRCFLEIPIYAVTTAYYDSDNEGQVTEEVKKVQWLDPVPEALRGKNVLVVDEVDDS
                     RVTMEFCLTELLKEDFGTIGVAVLHEKIKAKAGKIPEGIPYFSGITVEDWWINYPWDA
                     LDIDEHNRLAEAGRG"
     gene            10581..11636
                     /gene="plsX"
                     /locus_tag="ACFOCN_000421"
     CDS             10581..11636
                     /gene="plsX"
                     /locus_tag="ACFOCN_000421"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HFC6969629.1"
                     /translation="MITLAVDAMGGDQGLAVTVPGATAFLQAHPDVRLIMTGDETQLR
                     QALTAAGAPMERIDICHTTQVVGMDESPQSALKNKKDSSMRVAINQVKEGKAQAAVSA
                     GNTGALMATARFVLKTIPGIERPAIAKFLPSDTDHVTLALDLGANVDCTPEQLAQFAV
                     IGSELVHALHPQKGQPRVGLVNVGTEDIKGTDTVKQTYKLLQNSKLNFIGNIESNGIL
                     YGEADVVVADGFVGNVMLKTIEGAVKFMSGAIRREFQSNLFNKLAAVAALPALKGLKN
                     KLDPRKFNGAILLGLRGIVIKSHGGTDETGFRYALEEAYHEAKSAGLSKIEQGVAEQL
                     AALETAKAVQNENADGL"
     gene            11772..12023
                     /locus_tag="ACFOCN_000422"
     CDS             11772..12023
                     /locus_tag="ACFOCN_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6969630.1"
                     /translation="MKTLEKRMKALDKQMMKFGKSLEGRLDARLIESALDYIHYSERF
                     LAFEILCTYIEDFDVRLTEQESREISFINKEFEIESTSD"
     gene            12050..12466
                     /locus_tag="ACFOCN_000423"
     CDS             12050..12466
                     /locus_tag="ACFOCN_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969631.1"
                     /translation="MKTSTVVFGGFFMADNGERIQIPVLENPDIREINHFFSVSNFEK
                     KTGVLVFRIIPEPEFGNTELTVYFEKGYYLPMIQTILEGGDIEVKNLKTENYSGNTME
                     IWGDSYPIEHISKNISTIQNIISEFMIQKQTPAPII"
     gene            12486..12689
                     /locus_tag="ACFOCN_000424"
     CDS             12486..12689
                     /locus_tag="ACFOCN_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969632.1"
                     /translation="MPSEACLVFRRHFLRLKQRIGNPALPVHGNLHLKTICIPNHTPI
                     PVSVICTLPVLGNHRFFAYNSRI"
     gene            12716..13678
                     /locus_tag="ACFOCN_000425"
     CDS             12716..13678
                     /locus_tag="ACFOCN_000425"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFC6969633.1"
                     /translation="MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRH
                     IAAENEKTSDLAAEAARRALDAAGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGIT
                     NGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFG
                     DGAGAVVLSAADKPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKF
                     AVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHG
                     NTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY"
     gene            13725..14096
                     /locus_tag="ACFOCN_000426"
     CDS             13725..14096
                     /locus_tag="ACFOCN_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HFC6969634.1"
                     /translation="MKRQAFFKPIACAAFLSAISLRLPVLGACYAILSLYAFALYGID
                     KRRAVRGKRRIPEHRLLLPALFGGWAGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLA
                     TLILIDYFVPPELFVKLGQHL"
     gene            14122..15048
                     /gene="fabD"
                     /locus_tag="ACFOCN_000427"
     CDS             14122..15048
                     /gene="fabD"
                     /locus_tag="ACFOCN_000427"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HFC6969635.1"
                     /translation="MSFAFFFPGQGSQSLGMMNGFTGQAVVKNTFDEASAILGQDLWA
                     MINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGA
                     LDFADAVKLVRLRAELMQSAVPQGVGAMAAILGLEDEQVKQICAEAAQGEVVEAVNFN
                     SPGQIVIAGNAAAVGRAMAAAKEAGAKRALPLPVSVPSHCSLMKPAADKLAEALKTVE
                     IKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPG
                     KVLAGLAKRINKAAACSALTDAGQVAAFIEAH"
     gene            15187..17052
                     /gene="msbA"
                     /locus_tag="ACFOCN_000428"
     CDS             15187..17052
                     /gene="msbA"
                     /locus_tag="ACFOCN_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005319 - lipid transporter activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006869 - lipid transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HFC6969636.1"
                     /translation="MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIVAALIAIFGVAA
                     TESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVP
                     LFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLM
                     NMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRY
                     YRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSK
                     KITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKS
                     LANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKA
                     LDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLR
                     AQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIG
                     SNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGI
                     IVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA"
     gene            17152..18717
                     /gene="guaA"
                     /locus_tag="ACFOCN_000429"
     CDS             17152..18717
                     /gene="guaA"
                     /locus_tag="ACFOCN_000429"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HFC6969637.1"
                     /translation="MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKA
                     FNPKGIILSGGPNSVYESDYQADTGIFDLGIPILGICYGMQFMAHHLGGEVQPGNQRE
                     FGYAQVKTIDSELTRGIQDDTPNTLDVWMSHGDKVSKLPTGFTVIGDTPSCPIAMMEN
                     AEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPSWTMPNYIEEAVAKIREQVGSD
                     EVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVKVI
                     HVDAEGQFMEKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIES
                     AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHP
                     FPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPV
                     KSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGRVSNRIINEVKGINRVVY
                     DVSGKPPATIEWE"
     gene            18779..19525
                     /gene="fabG"
                     /locus_tag="ACFOCN_000430"
     CDS             18779..19525
                     /gene="fabG"
                     /locus_tag="ACFOCN_000430"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HFC6969638.1"
                     /translation="MSTQDLSGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESG
                     AAAISERLAQWGGEGRVLNSAEPETVENLIADIEKTFGKLDILVNNAGITRDNLLMRM
                     KEEEWDDIMQVNLKSVFRASKAVLRGMMKQRAGRIINITSVVGVMGNAGQTNYAAAKA
                     GLIGFSKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQTFTAQTALGRFGDAQD
                     IADAVLFLASDQAKYITGQTLHVNGGMLMP"
BASE COUNT         4895 a         6022 c         4723 g         3997 t
ORIGIN      
        1 cgctcaactt cgccgtcgaa ctcgacggca cggacgcatt cggcaggcct tcggggatgg
       61 cgattgtgca ggcaccgcgc atcctgccgc gcgtcgttcc cctgccgtcc gaactgtgtg
      121 gcggcggaca cggcttcgtc ttcctgtcgt ccatcctcca cgcccacgtc ggcaaactct
      181 tcccgggcat gaacgtcaaa ggctgccacc agttccgcct gacgcgcgac agcgacttga
      241 ccgttgacga agaagacctg caaaacctcc gcgccgccat ccaaaacgaa ctgcacgacc
      301 gcgaatacgg cgacggcgtg cggctcgaag tcgccgacac ctgtcccgcc tacatccgcg
      361 actttctgct cgcgcaattc aaactgaccg ccgccgaact ctatcaggtc aaaggcccgg
      421 tcaacctcgt gcgcctcaac gccgtccccg acctagtcaa ccgccccgat ttgaaatttc
      481 ccacacacac gccgggcaga ctgaaagcct tgggcaaaac cgcgtccata ttcgatttgg
      541 tgcgccaatc gcccatcctg ctgcaccacc cctaccaatc gttcgacccc gttgtcgaaa
      601 tgatgcgcga agctgccgcc gaccccgacg tgcttgccgt caaaatgacg atttaccgca
      661 ccggcacgcg ttccgaactc gtccgcgccc tgatgaaggc ggcactcgcc ggcaaacaag
      721 taaccgtcgt cgtcgaactg atggcgcgtt ttgacgaagc caacaacgtc aactgggcga
      781 agcagctcga agaggcgggc gcgcacgtcg tgtacggcgt gttcggctac aaagtccacg
      841 ccaagatggc actggtcatc cgccgcgaag acggcgtact caagcgttac gcccacctcg
      901 gcacgggtaa ctaccaccaa ggcacatcgc gcatctacac cgacttcggc atcattaccg
      961 ccgacgaaca aatcaccgcc gatgtgaaca cattgtttat ggaaatcaca ggcttgggca
     1021 aacccgggcg gctgaacaaa ctctaccaaa gcccgtttac cctgcacaaa atggttatcg
     1081 accgcatcgc acgcgaaacc gaacacgcaa aagccggcaa accggcgcgg attaccgcca
     1141 agatgaattc gctcatcgaa ccgaccgtca tcgaagccct gtatcgggca agcgcggcag
     1201 gcgtacaaat cgatttgatt gtgcgcggta tgtgcacctt gcgcccgggt gtaaaaggct
     1261 tgtccgaaaa catccgcgtc cgctccatca tcggcaggca gctcgaacac gcgcgcgtgt
     1321 attgcttcca caacaacggc gcggacgata cctttatctc cagcgcggat tggatggggc
     1381 gcaacttctt ccgccgcatc gaaaccgccg cgccgattgc cgcgcccgaa ctcaaaaaac
     1441 gcgtcatccg cgaaggtttg gaaatggcac tggcagacaa tacgcacgcg tggctgatgc
     1501 agcccgacgg cggctatatc cgcgccgcgc ctgccgaggg cgaaagcgaa gccgacctgc
     1561 aaaacgattt gtggacactg ctcggaggct gacccgcacc gccccaatca aaaaccatgc
     1621 cgtctgaaac ctttccgttt cagacggcat ggttttacag caatctaaac agggcggact
     1681 ggaatcaaaa acacaccttc gccattcccg cacaagcact tcccctatac gctcccaacc
     1741 ccaatccgcc gcattccaga cggcattgcc tttccgacag ccgaacaaaa ccccgaatcc
     1801 gtctgcacgg ttcggggcat atctccaata cgggcatcgt gctccggaaa accgtcaaat
     1861 ccgcatcggc atcacaatat atttgaaatt cggattgttc ggcacggtaa acagcgtcga
     1921 gcggttggca tcgccgaagg caagctgcat atcgtcggaa tggatgttgc gcaacacgtc
     1981 catcagatag ccgatattga aaccgacttc gagttcgccg ccctgatagg caatctcgat
     2041 ttcttcgcgc gcttcttcct gctcgttgtt gctgcacacg acgctcaaca ggccggattg
     2101 caggaacagg cgcgcgccac ggaatttttc gttggcaaga atggacacac gttccagcgc
     2161 gcccaaaagt tcggcacggg acaaaacgaa aatcttgtcg ttgtccaaag ggatgacgcg
     2221 gttgaaatcg gggaatttgc cgtcgataac cttgctgacg atggtcgtgc cgttgcattg
     2281 gaaacgcacc tgcttgtcca gcagctcgat ttgaatcgga tcgtcggggt tgttcaacag
     2341 tttgaacagt tccagcaccg ttttgcgcgg caaaatcact tcggcgcgcg gcaaatccgc
     2401 atcaatcgcg caggctgcat aggcaaggcg gtgtccgtcg gtcgccacaa ggcgcaactg
     2461 gctgccctca acctgcatca gcagaccgtt gagataatag cggatgtcct gcaccgccat
     2521 gctgtactgc acttgcgaca gcatggtttt gaaacgctcc tgctccagcg agaaagtcgc
     2581 gctgatgtcc tcgccgacat tcatcatcgg aaaatcggcg gcaggcaggg tctgcagggc
     2641 aaaacgcgat ttgcccgcct tcagcgtcag acggctgtcg tcccaatcca gcgacaccag
     2701 cgcaccggca ggcagcgcgc gcaaaatgtc ctgaaatttc ttggcattgg tggtgatgcg
     2761 gaagtcgtcc gcgccgccct cgggacccgc agtgtcgatt tggatttcca aatcggttgc
     2821 caagagtttg gtctgaccgc cttttccctc aatcaggacg ttggacagga tgggcagggt
     2881 gtggcggcgt tcgacgatgc cggtaacggc ttgcagcggc ttgagcaggc tgtcgcgttc
     2941 ggcttgtaaa atcaacatgt tcgctccttt aaatcggttg gattttttac ccttcggacg
     3001 gcatgggcaa tatcatgccg tctgaaaacg ttttccatca gttttgaatc agaatcagca
     3061 gcttttcata atcctgagcc aattccggat cttcttcgcg cagtttcgcc actgccctga
     3121 tgccgtgcat aacggtcgta tggtcgcgcc caccgaacga atcgccgata gacggcaggc
     3181 tcaaagtggt cagttctttg gtcaggctca tcgccacctg gcgcggacgg gcaatgttgc
     3241 gcgtgcgttt tttgccgagt acgtcgctga ttttgatgcg gtaatatttg gcaacggcat
     3301 caataatgat atcggcggta atgaccttat gcttctcggc aataatgtcc tgcaaagcgg
     3361 tacgcgccaa atcgatgtcg atgacgggac ggttcataaa gcggctgctc gctccgacac
     3421 ggttaaacgc gccttcaagc tcgcgcacgt tggaacggat cagattggca atgaacagcg
     3481 cggcttcgtc ttcaatactg atgcccgccg cttccgcctt tttctgcaaa atggcgatgc
     3541 gcatttccaa ttcgggcggc tcgagttcca aagtcagtcc ccatgaaaaa cgggatttga
     3601 ggcggtcgtc catgccttcg attttggcgg gtaaaacatc gcaagtgagg atcagctgtt
     3661 ttttctcgtt gtggaaatgg ttgtacagat agaaaaactc ttccatcgta cggtcttttc
     3721 ctttaataaa ctgaatatcg tcgataatca gcaggtcgta ttgcttgtat tgctgcttga
     3781 atacgtcata ggtattgttg cgaaccgcct tcataaagct gcggatatag tcgtccgaat
     3841 gcatatagcg cactttggca tcgggacggt ttttcaaaag ctcgttgccg accgcctgta
     3901 ccaggtgggt tttgcccaaa cccgtgctgc cgtacaggaa aaacgggttg tagctctgcc
     3961 ccgggctttc cgcaatcgcc tgcgccgcag ccgccgcaag gcggttgccc ttgccttcga
     4021 ccaatgtgtc gaacgtatag tccggcgaca gattggtctg ctcgtaacgt gcctcttccg
     4081 catcgcgctg cgcatccgtc cgcgctttcg caagcacctc cgattccgga cgggaagcag
     4141 gttcggcagt atggcgcggc tcatgcggga ggtttttcat acgttccgcc agaatatccg
     4201 ccgccgtttt cgacgcagcg ggtttgacag gctcttcaga cggcagctcg tccaacagaa
     4261 cctcctgcac aggcatctcc tccgaccccg cgtgcaagga cggctcggca ggttcgacag
     4321 caccttcaac cgccgccatc tcataacgca cgccttctcc tggtttgaat acgaaggcgg
     4381 aacggccagc agccaactct tccctcaccg cttctatttt cccggcaaac tggctcttaa
     4441 gcatattgca ggcaaactgg ttcttgccgt acaccaccca tacgccaccc tcctcaccga
     4501 cggtaagggg cgcaatccat tgcgcaaact gcccttgagg caacatatcg tgaagacggc
     4561 ggaggcacag cggccaaaac tctgctaatg tcatggataa gctcgaatcg gtaaaaatga
     4621 aatcgaaaac aaagaaaata taatattttc aaaaagaaaa caaatctgtt gaacacacat
     4681 cggttcaaaa tgcagcgaac cgaattatac cgactcgccg atattttatc cacaacccgt
     4741 gcaaaattta tccacagaaa ggcggcagaa atccgcaggc aatcgggcaa tcctcctgca
     4801 aagtttctat attgattgac aaaagcggca aattggagtg taattcacgg tttaattatc
     4861 tacccattct atttttagga aacatcatga aacgcactta tcaaccttcc gttaccaaac
     4921 gcaaacgcac ccacggcttc ctggtgcgct ccaaaacacg cggcggccgc gcagtattgg
     4981 ctgcacgccg cgccaaaggc cgcaaacgcc tggcggtata attttggact accgcttcgg
     5041 aaggcagtac cgcttgttga aaacggatga tttttcatcc gtttttgcat tcagaaaccg
     5101 ccgcagccgc gacctgctgc aagtttcgcg ttcaaacggc aacgggctgg accatccccg
     5161 catcggtctg gtggtcggca aaaaaaccgc caaacgcgcc aacgaacgaa attatatgaa
     5221 gcgcgtcatc cgcgactggt tcagattgaa caaaaaccgg ctgccgccgc aggatttcgt
     5281 cgtgcgcgtc caccgtaaat tcgacaggtc taccgcaaaa caggcaaggg cggaactggc
     5341 acaactcatg ttcggcaacc ccgcaaccgg atgcaggaaa caggcatgat cagaacggta
     5401 ctctgcaggc aaggttcaga cagcaacggg tttcccatac aaggaacatc ccgatgaact
     5461 tcctattgtc caaactcctg ctgggactga tacggttcta ccaatattgc atcagcccgc
     5521 tgattccgcc gcgctgccgc tatacgccga cctgttcgca atacgccgtc gaagcagtca
     5581 aaaaatacgg cgcattcaaa ggcggccggc tcgccatcaa gcgcattgca cgctgccacc
     5641 ccctcggcgg acacggacac gaccccgttc cctgacccga cgcaatattc aaattgcacg
     5701 ctttcctttt atttcccatc ggtttctata taatgccgtc tgaagcttcg ggcaggcggc
     5761 acgaccgtcg ggtatgaaac ccgcccttat tccccgtcta tcggaacacg caacctgcgg
     5821 catttccgac cattcaggaa actcttatgg attttaaaag actcacggcg tttttcgcca
     5881 tcgcgctggt gattatgatc ggctgggaaa agatgttccc cactccgaag cccgtccccg
     5941 cgccccaaca ggcagcacaa caacaggccg taaccgcttc cgccgaagcc gcgctcgcgc
     6001 ccgcaacgcc gattaccgta acgaccgaca cggttcaagc cgtcattgat gaaaaaagcg
     6061 gcgacctgcg ccggctgacc ctgctcaaat acaaagcaac cggcgacgaa aataaaccgt
     6121 tcatcctgtt tggcgacggc aaagaataca cctacgtcgc ccaatccgaa cttttggacg
     6181 cgcagggcaa caacattcta aaaggcatcg gctttagcgc accgaaaaaa cagtacagct
     6241 tggaaggcga caaagttgaa gtccgcctga gcgcgcctga aacacgcggt ctgaaaatcg
     6301 acaaagttta tactttcacc aaaggcagct atctggtcaa cgtccgcttc gacatcgcca
     6361 acggcagcgg tcaaaccgcc aacctgagcg cggactaccg catcgtccgc gaccacagcg
     6421 aacccgaggg tcaaggttac tttacccact cttacgtcgg ccctgttgtt tatacccctg
     6481 aaggcaactt ccaaaaagtc agcttttccg acttggacga cgatgccaaa tccggcaaat
     6541 ccgaggccga atacatccgc aaaaccccga ccggctggct cggcatgatt gaacaccact
     6601 tcatgtccac ctggattctc caacctaaag gcagacaaag cgtttgcgcc gcaggcgagt
     6661 gcaacatcga catcaaacgc cgcaacgaca agctgtacag caccagcgtc agcgtgcctt
     6721 tagccgccat ccaaaacggc gcgaaagccg aagcctccat caacctctac gccggcccgc
     6781 agaccacatc cgtcatcgca aacatcgccg acaacctgca actggccaaa gactacggca
     6841 aagtacactg gttcgcctcc ccgctcttct ggctcctgaa ccaactgcac aacatcatcg
     6901 gcaactgggg ctgggcgatt atcgttttaa ccatcatcgt caaagccgta ctgtatccat
     6961 tgaccaacgc ctcttaccgc tctatggcga aaatgcgtgc cgccgcaccc aaactgcaag
     7021 ccatcaaaga gaaatacggc gacgaccgta tggcgcaaca acaggcgatg atgcagcttt
     7081 acacagacga gaaaatcaac ccgctgggcg gctgcctgcc tatgctgttg caaatccccg
     7141 tcttcatcgg attgtattgg gcattgttcg cctccgtaga attgcgccag gcaccttggc
     7201 tgggttggat taccgacctc agccgcgccg acccctacta catcctgccc atcattatgg
     7261 cggcaacgat gttcgcccaa acttatctga acccgccgcc gaccgacccg atgcaggcga
     7321 aaatgatgaa aatcatgccg ttggttttct ccgtcatgtt cttcttcttc cctgccggtc
     7381 tggtattgta ctgggtagtc aacaacctcc tgaccatcgc ccagcaatgg cacatcaacc
     7441 gcagcatcga aaaacaacgc gcccaaggcg aagtcgtttc ctaaatgccg cagcatgaaa
     7501 aatgccgtct gaaacctgtt cagacggcat ttttattgcc caccccctat cggggcggaa
     7561 atcttcaacc cgcatacatc acaaaaatcg tcgggcgttt tttcagattg ggcatttctt
     7621 ttctttttcg ccactgcacg attgtttgac tgatgatttc ctgtgtcggc aaggtcaaat
     7681 ccgtagccgt gcataaacgc gtttcaggat gcaggttttc caccgcatcg gcaagcagcg
     7741 catcattgcg gtaaggcgtt tcaataaaaa tctgcgtctc gccgcactgg cgcgaacgct
     7801 gttccaaagc ccgaaaagcc tgaatccgct cgtttttttc agacggcaga tagcctttaa
     7861 acgcaaaact ctgcccgttc gcacccgaag ccatcaaagc cagcagcagg ctggaaggcc
     7921 cgaccagcgg acgcacttca aaaccgtgtt tatgcgccaa tgccaccaaa ttcgcacccg
     7981 gatcggccac agccgggcaa cccgcctcac tgacaatgcc catactgcgc ccttcttgca
     8041 aaggtttcag caattccggc aaagtcttca aatccgtatg ttcattcaac gtttgcagat
     8101 tcagctcgcg gataggcgta gtcacgccca aatgtttcaa atgcgcacgc gccgtttttt
     8161 ccgcctccac gacaaaatcc gtcagcccga caatcgcctg ttgttcatgc ggcaacaggc
     8221 acggcgtgtc aggcgtaccc aaaggcgtag gaatcaaata caaaacagga gacatcattc
     8281 cctcactcat cggttaaaaa tgccgtctga gcctttcaga cggcataaac gggcagttac
     8341 agaacctcca cgccctcatt tttcaagaaa tcgaccagac ggaaaaccgg caaaccgatt
     8401 aaagcattcg gatcggtact ctcaatcctt tcaatcagca atgcacccaa atcctcactc
     8461 ttcagcgcac acgaacaata aaccgcatca ggctcgcgct ccaaatagcg gaggatatgc
     8521 aactcgtcca actgcctcat cacgaccacc gtcttatcga tatgccgccg catcctgccc
     8581 gtaaccgtat tcaacagcac gatcgcgctg taaaactcaa tctccctgcc gctcaagtgc
     8641 atcagcatct tttgcgcatt ggcaaggttc atcggcttgc cccactgcct gccgtcgcac
     8701 cacgccacct ggtccgcacc gacaatcaac gcctctggga aacgcccggt caacgaccgc
     8761 gccttaccct cggcaaggcg caatgccgtc tgaggggcgg attcccccaa catcggcgtt
     8821 tcgtcaaaat cgggggacgc cgcctgaaag gcaatgccga gcctttccat ctgttcgcgg
     8881 cggaaaaccg aactcgtacc caaaatcaaa ggcagttcca aacccatccc atcctcctta
     8941 ccgttgaaaa cacgcccgaa ggggcagtaa aatccagcca tgcgccgaaa cacggatacc
     9001 cgccttcggc gtaccgcaac atttttctta aaaatattga cgttagaaca tctaaattat
     9061 atcatatccc gtttatgtca gaccctaatt tgattgactt ggaaattttt gccgccgaag
     9121 ggcagaacct gcaaggcagt tttctgctgg aagaattgga tgaacgcgtc agttcgcacg
     9181 attatcccgc cgacaggcag accaaaatat cgtttacact gaccggcggt cgcgaccggc
     9241 tgcaacgcct gttcctcgac ctgaacgtca aagccgatat gcccctgatt tgccagagat
     9301 gtatcaaacc catgccgttc atgcttgatg aaagcagccg tatcgtcctg ttttccaacg
     9361 aagagtcctt ggacgaatcc atgcttgccg acgaagaact cgaaggcata ctgattgaaa
     9421 aagaactcga cgtgcgcaca ttggtagaag accaaatcct gatgtccctg cccttttcgc
     9481 cgcgacacga agactgcggc gacaatggga cactggaaga agtcaatcgg gacaaaccca
     9541 acccctttgc tgttttggca ggtttgaaaa gcaattgatt aggacacagt ttatttatct
     9601 aggagcttga aatggccgtt caacaaaaca aaaaatcccc ttccaaacgc ggtatgcacc
     9661 gttcgcacga cgcgctgacc gcgcctgcac tgtctgtcga cagcacaacc ggcgaagtac
     9721 accgcccgca ccacatctcc cccaacggta tgtaccgcgg ccgcaaagtg gtcaaagcca
     9781 aaggcgaata atccctattc gactgactga aaaagccaga acattgccat gcaattactg
     9841 gctttttttg cattggacgc accatccgtc caaactttcg ccatacgtca acacacaggg
     9901 gcaaagcgtt ccgtataata ccccgtgaaa atattccaaa agccccaacc accaaggaaa
     9961 ttccgatgaa acagaaaatc tggtacacct acgatgacat ccaccgcgtc atcaaagcat
    10021 tggcagaaaa aatccggaac gccgacatca aatacgatgc catgattgcc atcggcggcg
    10081 gcggctttat tccggcacgt atgctgcgct gttttctgga aattccgatt tatgccgtaa
    10141 ccaccgccta ttacgacagc gacaacgaag gacaggttac cgaagaagtc aaaaaagtcc
    10201 aatggctaga ccccgtcccc gaagccttac ggggtaaaaa cgtccttgtt gtcgacgaag
    10261 tggacgacag ccgcgtaacc atggaatttt gcctgacaga gctgctcaaa gaagacttcg
    10321 gcaccatcgg cgtcgccgta ctgcacgaaa aaatcaaagc caaagcaggt aaaatccccg
    10381 aaggcattcc ctatttcagc ggcatcaccg tagaagactg gtggatcaac tatccgtggg
    10441 acgcactcga catcgacgaa cacaaccgcc ttgccgaggc cggccgaggc tgaccctttc
    10501 agacggcata ttttccgaac cgatgccgtc tgaagcccgc acgacccctg ccgcagaccg
    10561 aaaacctacc ggagaaccct atgattacac ttgccgtaga tgccatgggc ggcgaccaag
    10621 gacttgccgt taccgtaccc ggcgcaaccg cattcctcca agcacacccc gatgtccgcc
    10681 tgattatgac cggcgacgaa acgcaactgc gccaagccct gaccgcggca ggcgcaccga
    10741 tggaacgcat cgacatctgc cataccaccc aagttgtcgg catggatgaa tcccctcagt
    10801 ccgccctaaa gaacaaaaaa gactcctcca tgcgcgttgc catcaaccaa gttaaagaag
    10861 gcaaagccca agccgccgta tccgcaggca acacgggcgc actcatggca accgcacgtt
    10921 tcgtcctcaa gaccataccc ggtatcgaac gccccgccat cgccaaattc ctcccgtccg
    10981 acaccgacca tgttaccctc gccctcgacc ttggcgcgaa cgtcgactgc acgcccgaac
    11041 agctcgccca atttgccgtt atcggcagcg aactcgtcca cgcactccat cctcaaaaag
    11101 gacagccgcg cgtcgggctg gtcaacgtcg gcacggaaga catcaaaggt acggacaccg
    11161 tcaaacaaac ctacaaactg ctgcaaaaca gcaaactcaa ctttatcggc aacatcgaaa
    11221 gcaacggcat cctgtacggc gaagcagatg tcgtcgtcgc cgacggcttt gtcggcaacg
    11281 tcatgctcaa aaccatcgaa ggcgcggtca aattcatgag cggagccatc cgccgcgaat
    11341 tccaaagcaa cctgttcaac aaacttgccg ccgttgccgc cctacccgcc ctcaaagggc
    11401 tgaaaaacaa actcgatccg cgcaaattca acggggccat cctgctcggg ctgcgcggca
    11461 tcgtcatcaa aagccacggc ggcacagacg aaaccggttt ccgctacgca ctcgaagaag
    11521 cctaccacga agccaagtcc gccggccttt ccaaaatcga acaaggcgtt gccgaacaac
    11581 tcgccgcact cgaaactgcc aaagccgtcc aaaacgaaaa tgccgacggt ctgtaacaca
    11641 cacgatgccg tctgaacgcc cccgcccctt tcagacggca tccgcccgca ccaaacctgc
    11701 gggcgcggac ggcgatgcgc ctgtccggca cttcccaaat acttccctgt aaaataagga
    11761 gtatttgaaa aatgaagaca ttagaaaaac ggatgaaagc tctagacaaa cagatgatga
    11821 agttcggaaa atcccttgaa ggcaggcttg atgcccgtct gattgaatcc gcattggatt
    11881 atattcatta ttcggaacgt tttttggctt ttgaaatcct gtgtacttat atcgaagatt
    11941 tcgatgtccg gctgacggaa caagaatccc gggaaatttc ttttatcaac aaggaatttg
    12001 agatagaaag cacgtccgat taaccaataa agccaatggg ttgataaaca tgaaaacatc
    12061 gacggtcgtt tttggcggat tttttatggc agacaacgga gagcgaatcc aaatccccgt
    12121 tttggaaaat cctgacatta gggaaatcaa tcactttttt tccgtatcaa attttgagaa
    12181 aaaaaccggc gtccttgttt tcagaatcat ccccgagccg gaatttggca ataccgaatt
    12241 aactgtctat tttgaaaaag gatattattt gccaatgatt caaacaattt tagaaggcgg
    12301 ggatattgaa gtcaaaaacc ttaaaacgga aaattatagt ggaaatacaa tggaaatttg
    12361 gggagattcc taccctattg agcatatctc taaaaatatt tctacaattc aaaatataat
    12421 ttctgaattt atgatacaaa aacaaacacc ggcaccaata atttgatgga aaaccaacaa
    12481 tcaaaatgcc gtctgaagca tgtttggttt tcagacggca tttccttcgc ttaaaacagc
    12541 gtatcggcaa ccccgccctg cctgtccacg gcaatctgca tctgaaaacc atctgtatcc
    12601 caaaccacac ccccatccct gtttccgtca tttgcaccct gcccgtattg ggcaatcatc
    12661 ggtttttcgc ttacaatagc cgaatctgaa ccaactatcc aaaaaggccg ttcccatgca
    12721 gtatgccaaa atttccggca cgggcagcta tcttcccgcc aaccgcgtca gcaatgacga
    12781 ccttgcccaa aaagtggata cctcggacga gtggattacc gcgcgtacgg gcatcaagtt
    12841 ccgccatatt gcagccgaaa atgagaaaac cagcgatctt gccgccgaag cagcccgccg
    12901 cgcactggat gcagccggat tagacagcgg cgaaatcgat ttgattatcg tggcgacggc
    12961 aacgccggat atgcagtttc cttctaccgc caccatcgtg cagcaaaaat tgggcatcac
    13021 caacggctgt cccgcgtttg acgtacaggc agtgtgcgca ggctttatgt acgcgctgac
    13081 cactgcaaac gcctacatca aaagcggcat ggcaaaaaac gcgctggtca tcggcgcgga
    13141 aaccttcagt cgcattgtag actggaacga ccgcacaacc tgcgtattgt tcggcgacgg
    13201 cgcgggcgcg gtggttttga gcgcggcgga caaaccgggc atcatccaca gcaaactcaa
    13261 agccgacggc aattatctga aactcttaaa cgtccccggg caaatcgcct gcggcaaagt
    13321 ttccggttcg ccgtacattt cgatggacgg tcccggcgtg ttcaagtttg ccgtcaaaat
    13381 gctgtccaaa atcgccgatg acgttatcga agaagccggt tataccgccg ctcaaatcga
    13441 ctggatcgtg ccgcatcagg caaaccgccg cattatcgaa tcgaccgcga aacatttagg
    13501 tttgagtatg gacaaagtcg tcctgaccgt ccaagaccac ggcaacacat ccgccgcatc
    13561 gattccgctg gctttggata cgggcatccg cagcggacaa atcaaacgcg gtcaaaacct
    13621 gctgctcgaa ggcatcggcg gcggtttcgc gtggggcgcg gtattgctgc aatattgaat
    13681 accatgccgt ctgaagcagg ttttcagacg gtatttccca tatcatgaag cggcaggctt
    13741 tcttcaaacc aattgcgtgt gcggcatttc tgtctgccat ttcgctgcgc ctccccgtat
    13801 tgggcgcgtg ttacgcaata ttgtccctct atgcgtttgc actttacggc atcgacaaac
    13861 ggcgtgccgt gcggggaaaa cgccgcattc ccgaacaccg cctgctgctg cctgccttgt
    13921 tcggcggttg ggcgggcgca tacttgggca gcaggatatt caggcataaa acggcgaaaa
    13981 agcgttttgt tgtgctgttc cgtctgactg tttcaggtaa tgtcctggcg accctcatcc
    14041 tgattgatta tttcgttccg cccgaacttt ttgtcaaact cgggcaacat ctctgacaat
    14101 ccaaccaaac aaaggaatac catgtctttt gcattcttct ttcccggaca aggttctcaa
    14161 agcctcggca tgatgaacgg ctttacaggg caggccgtcg tcaaaaacac atttgacgaa
    14221 gcatccgcca tattgggtca agacttgtgg gcgatgatta acggtagcga tgccgaaatc
    14281 atcggtcaaa ccgtcaatac ccaacccatc atgctcgccg ccggcgttgc cgtttaccgc
    14341 gcctatttgg aagcgggcgg caaaacgcct gccgccgttg ccggacacag cctcggcgaa
    14401 tataccgcac tcgttgccgc cggcgcattg gattttgccg acgcggtcaa actcgtgcgc
    14461 ctgcgcgccg aactgatgca gtctgccgta ccgcaaggcg tgggcgcaat ggcggcgatt
    14521 ctcggcttgg aagatgagca ggtaaaacaa atttgcgccg aagccgccca aggcgaagtg
    14581 gtcgaagccg tcaacttcaa ctcacccgga caaatcgtga ttgcaggcaa tgccgccgcc
    14641 gtcggacgcg ccatggctgc cgccaaagaa gccggtgcca aacgcgccct gccgctgccc
    14701 gtgtccgtac cttcccattg cagcctgatg aaacccgccg ccgacaaact cgccgaagcc
    14761 ctcaaaaccg tcgaaatcaa gcagccgcaa atccgcgtca tccacaacgc cgacgttgcc
    14821 gcctacgatg atgccgacaa aatcaaagac gcgctcgtcc gccagcttta cagccccgta
    14881 cgctggacag aaaccgtcaa cgcccttgtt tcagacggca ttgccgaatc cgccgaatgc
    14941 ggcccgggca aagtgttggc gggcttggca aaacgcatca acaaggccgc cgcgtgcagc
    15001 gcactgaccg atgccggaca ggttgccgcc tttatcgaag cgcactgact tcgttccgca
    15061 aaaagcagcc tgccctcttc aggctgcttt tcacgtccga acggcaaaca gccgcatatt
    15121 tgcgctataa ttgatgacga ccaaaccacc gacagcggct gccgttgcag ttcccgccct
    15181 accgatatga tagaaaaact gactttcgga ctgtttaaaa aagaagacgc gcgcagcttt
    15241 atgcgcctga tggcgtacgt ccgcccctac aaaatccgca tcgttgccgc cctgattgcc
    15301 attttcggcg ttgccgccac cgaaagctac cttgccgcct tcatcgcccc cctgattaac
    15361 cacggctttt ccgcacctgc cgcgccgccc gagctgtctg ccgccgccgg catcatttcc
    15421 accctgcaaa actggcgcga acagtttacc tatatggttt gggggacgga aaacaaaatc
    15481 tggaccgtcc ccctcttcct catcatcctc gtcgtcatcc gtggcatctg ccgctttacc
    15541 agcacctatc tgatgacttg ggtctccgtg atgaccatca gcaaaatccg caaagatatg
    15601 tttgccaaaa tgctgaccct ttcctcccgc taccatcagg aaacgccgtc cggcaccgta
    15661 ctgatgaata tgctcaacct gaccgaacag tcggtcagta acgccagcga catcttcacc
    15721 gtcctcacgc gcgacacgat gatcgttacc ggcctgacca tcgtcctgct ttacctcaac
    15781 tggcagctca gcctcatcgt tgtcctgatg ttccccctgc tctccctgct ctcgcgctac
    15841 taccgcgacc gtctgaagca cgtcatttcc gactcgcaaa aaagcatagg cacgatgaac
    15901 aacgtgattg ccgaaaccca tcagggacac cgcgtcgtca agctgttcaa cgggcaggcg
    15961 caggcggcaa accggtttga cgcggtcaac cgcaccatcg tccgcctcag caaaaaaatc
    16021 acgcaggcaa cggcggcaca ttccccgttc agcgaactga ttgcctcgat tgccctcgcc
    16081 gttgtcatct tcatcgccct gtggcaaagc caaaacggct acaccaccat cggcgaattt
    16141 atggcattca tcgtcgcgat gctgcaaatg tacgcaccca tcaaaagcct tgccaacatc
    16201 agcatcccta tgcagacgat gttcctcgcc gccgacggcg tatgtgcatt tctcgacacc
    16261 ccgcccgaac aggacaaagg cacgctcgca ccgcagcgtg tcgaagggcg catcagcttc
    16321 cgcaacgtcg atgtcgaata ccgttcggac ggcatcaaag ccctcgacgg cttcaacctc
    16381 gacatcagac aaggcgaacg cgtcgccctg gtcggacgtt ccggcagcgg caaatccacc
    16441 gtcgtcaacc tgctgccccg ctttgtcgaa ccgtctgccg gcaacatctg catagacggt
    16501 atcgacatcg ccgacatcaa actcgactgc ctgcgcgccc aatttgccct cgtctcccaa
    16561 gacgtattcc tgtttgacga caccctgttt gaaaacgtcc gatatagccg tcccgacgcg
    16621 ggcgaagccg aagtcctatc cgccctccaa gccgctaacc tgcaaagcct gatcgacgca
    16681 tcaccgctcg gactgcacca gcccatcgga tcgaacggca gcaacttatc cggcggacag
    16741 cggcaacgcg ttgccattgc ccgcgccatt ttgaaagacg cgccgatatt attattggac
    16801 gaagccacca gcgcattgga caacgaatcc gaacgcctcg tccaacaggc gctcgaacgc
    16861 ctgatggaaa accgcaccgg catcatcgtc gcccaccgcc tgaccaccat cgaaggggcc
    16921 gaccgcatca tcgtaatgga cgacggcaaa atcatcgaac aaggcacaca cgaacaactg
    16981 atgtcccaaa acggctacta cacgatgtta cgcaatatct caaacaaaga tgccgccgtc
    17041 cggacggcat aaacaaaatg ccgtctgaaa tggtacaatc gccccgaccc tttcagacgg
    17101 catcatatcc gccgacccat ccgattatct tcaatcactg taaaacccat tatgacccaa
    17161 gacaaaatcc tcatccttga cttcggttcg caagttaccc agctcatcgc ccgccgcgtg
    17221 cgcgaagccc acgtttactg cgagctgcat tccttcgata tgcctttgga cgaaatcaaa
    17281 gccttcaacc ccaaaggcat catcctttcc ggcggcccta attccgttta cgaatccgac
    17341 tatcaagccg ataccggtat ctttgacttg ggcattccga ttttgggcat ttgctacggc
    17401 atgcaattta tggcgcacca cttgggtggt gaagtgcaac ccggcaacca gcgcgaattc
    17461 ggttacgcgc aagtcaaaac catcgacagc gagctgacac gcggcattca agacgatacg
    17521 ccaaacacgc tcgacgtatg gatgagccac ggcgataaag tttccaaact gcctaccggt
    17581 ttcaccgtca tcggcgacac gccgtcctgc ccgattgcca tgatggaaaa cgccgaaaaa
    17641 caattctacg gcatccaatt ccaccccgaa gtaacccaca ccaaacaagg ccgcgccctg
    17701 ttgaaccgct ttgtcttgga tatttgcggc gcgcaaccta gctggacgat gccgaactac
    17761 atcgaagaag ccgttgccaa aatccgcgaa caggtcggca gcgacgaagt gattttgggt
    17821 ttgtccggcg gcgtggactc ttccgtagcc gccgcgctga ttcaccgcgc catcggagac
    17881 caactgacct gcgtgttcgt cgatcacggc ctcttgcgct tgaacgaagg caaaatggtg
    17941 atggatatgt tcgcccgcaa tttgggtgtg aaagtgattc acgtcgatgc cgaagggcag
    18001 tttatggaga aactcgccgg cgttaccgat cccgagaaaa aacgcaaaat catcggtgcg
    18061 gaatttatcg aagtatttga tgctgaagaa aaaaaactca ccaacgccaa atggctggcg
    18121 caaggcacga tttaccctga cgtaatcgaa tccgcaggcg cgaaaaccaa aaaagcccac
    18181 gccatcaaat cccaccacaa tgtcggcggc ctgcctgaaa acatgaagct caagctgctt
    18241 gagccgttgc gcgatttgtt caaagacgaa gtgcgcgaac tgggcgtggc tttgggtctg
    18301 ccgcgcgaaa tggtgtaccg ccatcccttc cccggtcccg gtttgggcgt gcgcatcttg
    18361 ggcgaagtga aaaaagaata cgccgactta ttgcgtcaag cagacgatat ttttattcaa
    18421 gaattacgca acaccaccga cgaaaacggc acgtcttggt acgacctgac cagccaagcc
    18481 ttcgccgtgt tcctgcctgt gaaatccgtc ggcgtaatgg gcgacggacg cacttacgac
    18541 tacgtcgtcg cactgcgcgc agtcatcacc agcgacttta tgaccgcaca ttgggctgag
    18601 ttgccttact cactgctcgg acgcgtgtcc aaccgcatca tcaacgaagt caaaggcatc
    18661 aaccgcgtgg tgtacgatgt cagcggcaaa ccgcctgcca ccatcgagtg ggaataacca
    18721 gcaaacaggg ctgcaccgtc cggcgcagtc tttcgattat cggaaaaaag gaaaaaatat
    18781 gagcacacaa gatttaagcg gcaaaatcgc tttggtaaca ggcgcctcgc gcggtatcgg
    18841 tgcagcaatt gccgacacac tggcggcagc cggtgccaaa gtcatcggta cggcgaccag
    18901 tgagagcggt gcggcggcga ttagcgagcg gttggcgcaa tggggcggcg aaggccgcgt
    18961 attaaattcc gccgaacccg aaaccgtcga aaacctgatt gccgacatcg aaaaaacgtt
    19021 cggcaaactc gatattctgg tcaacaacgc cggcatcacc cgcgacaacc tcctgatgcg
    19081 tatgaaagaa gaagagtggg acgacatcat gcaggtcaac ctcaaatccg tctttcgcgc
    19141 ctccaaagcc gtcttgcgcg gcatgatgaa gcagcgcgcc ggccgtatca tcaacatcac
    19201 atccgtcgtc ggcgtgatgg gcaatgccgg tcaaaccaac tatgccgcgg caaaagcagg
    19261 cttaatcggt ttctccaaat ccatggcgcg cgaagtcggc agccggggca ttaccgtcaa
    19321 ctgcgtcgcc cccggcttta tcgataccga catgacccgc gccctgccgg aagaaacccg
    19381 ccaaaccttt accgcccaaa ccgccttggg cagattcggc gacgcgcaag acattgccga
    19441 tgcagtcttg ttcttggctt ccgatcaggc aaaatacatt accggtcaaa cgctgcacgt
    19501 caacggcggc atgctgatgc cctgacgggc agccgtaccg acaatgccgt ctgaagccct
    19561 ttcagacggc atttgcattc tcaggcaaaa tgaacacacg ccacaccccg ccctgcccct
    19621 gcggatcagg cacaagc
//
LOCUS       DAXIFD010000015        19633 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.015, whole genome shotgun sequence.
ACCESSION   DAXIFD010000015 DAXIFD010000000
VERSION     DAXIFD010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19633
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.015"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            35..922
                     /gene="prmA"
                     /locus_tag="ACFOCN_000431"
     CDS             35..922
                     /gene="prmA"
                     /locus_tag="ACFOCN_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HFC6969639.1"
                     /translation="MPYQQITINVNDAVAERLADALMEHGALSAAIEDAYAGTQNEQA
                     IFGEPGMPAEQIWQQSKVIALFGEHDEAAAIIQIAAQECGLKDLAYTGETIEDQDWVR
                     LTQSQFDPIRISDRLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQ
                     LKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGKDNAEQNNVDAQFFLP
                     DGLPQGQFDVVVANILANPLRMLGEMLAARTKQGGRIVLSGLLDEQAEELGGIYSQWF
                     DLDPAETEEGWARLSGTKR"
     gene            940..1503
                     /gene="orn"
                     /locus_tag="ACFOCN_000432"
     CDS             940..1503
                     /gene="orn"
                     /locus_tag="ACFOCN_000432"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HFC6969640.1"
                     /translation="MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEV
                     YAVHQSDELLDNMDEWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATP
                     MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPSVAKSVVKRGSHKAL
                     DDILESIEEMRHYREHFLISAPRAEAQ"
     gene            complement(1909..3192)
                     /gene="hemL"
                     /locus_tag="ACFOCN_000433"
     CDS             complement(1909..3192)
                     /gene="hemL"
                     /locus_tag="ACFOCN_000433"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HFC6969641.1"
                     /translation="MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYV
                     WDENGTRYTDYVGSWGPAIVGHAHPEVIEAMREAALGGLSFGAPTEGEIVIAEEIAKI
                     MPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTF
                     GNPSSAGVPADFTKHTLVLEYNNIAQLEEAFAQSGNDIACVILEPFVGNMNLVRPSEA
                     FVKALRELTEKHGAVLIYDEVMTGFRVALGGAQSLHGITPDLTTMGKVIGGGMPLAAF
                     GGRKDIMECISPLGGVYQAGTLSGNPIAVAAGLKTLEIIRREGFYENLTARTEQLVQG
                     FRTAADAAGIEFTADSVGGMFGLYFAAHAPRNYADMARSNIDAFKRFFHGMLDRGIAF
                     GPSAYEAGFVSAAHTPELIDETVAVAVEVFKAMAA"
     gene            complement(3256..3639)
                     /locus_tag="ACFOCN_000434"
     CDS             complement(3256..3639)
                     /locus_tag="ACFOCN_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010950978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HFC6969642.1"
                     /translation="MYCLRLRRLVLIFVNPLYQTEEGIAQTVVKGKTTRAEVEARFGK
                     RNPFGCYAYHEVSLPIYNFLPTNFIYMKSERRHWEWCVDYDWEGVVRDYRFTHKVEKD
                     ERSVIRDAVGVIRKEAGKSLSQPEK"
     gene            complement(3692..3772)
                     /locus_tag="ACFOCN_000435"
                     /pseudo
     CDS             complement(3692..3772)
                     /locus_tag="ACFOCN_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
     gene            3975..5303
                     /gene="miaB"
                     /locus_tag="ACFOCN_000436"
     CDS             3975..5303
                     /gene="miaB"
                     /locus_tag="ACFOCN_000436"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HFC6969643.1"
                     /translation="MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADII
                     LFNTCSVREKAQEKVFSDLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVV
                     FGPQTLHRLPKMIVDKETSGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKY
                     CSFCVVPYTRGEEFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDF
                     ATLLRIVHEIPGIERMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSA
                     MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSF
                     VFIYSPRPGTPAANLHDDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGI
                     SKKDPDQLQARTANNRVVNFTGTPDMINQMIDLEITEAYTFSLRGKVVEA"
     gene            complement(5388..7301)
                     /gene="dxs"
                     /locus_tag="ACFOCN_000437"
     CDS             complement(5388..7301)
                     /gene="dxs"
                     /locus_tag="ACFOCN_000437"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HFC6969644.1"
                     /translation="MNPSPLLDLIDSPQDLRRLDKKQLPRLAGELRAFLLESVGQTGG
                     HFASNLGAVELTIALHYVYDTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAG
                     FPKRSESEYDAFGVGHSSTSIGAALGMAVADKQLGNNRRSVAIIGDGAMTAGQAFEAL
                     NCAGDMDVDLLVVLNDNEMSISPNVGALPKYLASNVVRDMHGLLSTVKAQTGKVLDKI
                     PGAMEFAQKVEHKIKTLAEEAEHAKQSLSLFENFGFRYTGPVDGHNVENLVDVLKDLR
                     SRKGPQLLHVITKKGNGYKLAENDPVKYHAVAKLPKEGAAQMPSEKEPKPVAKPTYTQ
                     VFGKWLCDRAAADERLIAITPAMREGSGLVEFEQRFPDRYFDVGIAEQHAVTFAGGLA
                     CEGMKPVVAIYSTFLQRAYDQLVHDIALQNLPVLFAVDRAGIVGADGPTHAGLYDLSF
                     LRCIPNMIVAAPSDENECRLLLSTCYQADAPAAVRYPRGTGTGAPVSDGMETVEIGKG
                     IIRREGGKTAFIAFGSMVAPALAVAGKLNATVADMRFVKPIDEELIVRLARSHDRIVT
                     LEENAEQGGAGGAVLEVLAKHGICKPVLLLGVADTVTGHGDPKKLLDDLGLSAEAVER
                     RVRAWLSDRDAAN"
     gene            complement(7386..8303)
                     /gene="xerC"
                     /locus_tag="ACFOCN_000438"
     CDS             complement(7386..8303)
                     /gene="xerC"
                     /locus_tag="ACFOCN_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HFC6969645.1"
                     /translation="MVLDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQM
                     PSEDAGGVPQDLSRRDFTAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDP
                     TADIKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIH
                     GLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNG
                     TRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLS
                     TTQIYTKLDFDHIARLYDEAHPRAKRRDE"
     gene            8497..9561
                     /gene="fba"
                     /locus_tag="ACFOCN_000439"
     CDS             8497..9561
                     /gene="fba"
                     /locus_tag="ACFOCN_000439"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219833.1"
                     /note="catalyzes the reversible aldol condensation of
                     dihydroxyacetonephosphate and glyceraldehyde 3-phosphate
                     in the Calvin cycle, glycolysis, and/or gluconeogenesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HFC6969646.1"
                     /translation="MALVSMRQLLDHAAENSYGLPAFNVNNLEQMRAIMEAADQVNAP
                     VIVQASAGARKYAGAPFLRHLILAAVEEFPHIPVVMHQDHGASPDVCQRSIQLGFSSV
                     MMDGSLMEDGKTPSSYEYNVNATRTVVNFSHACGVSVEGEIGVLGNLETGEAGEEDGV
                     GAVGKLSHDQMLTSVEDAVRFVKDTGVDALAIAVGTSHGAYKFTRPPTGDVLRIDRIK
                     EIHQALPNTHIVMHGSSSVPQEWLKVINEYGGNIGETYGVPVEEIVEGIKHGVRKVNI
                     DTDLRLASTGAVRRYLAENPSDFDPRKYLSKTIEAMKQICLDRYLAFGCEGQAGKIKP
                     VSLEKMANRYAKGELNQIVK"
     gene            9719..10540
                     /locus_tag="ACFOCN_000440"
     CDS             9719..10540
                     /locus_tag="ACFOCN_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="factor H-binding protein"
                     /protein_id="HFC6969647.1"
                     /translation="MNRTAFCCLSLTAALILTACSSGGGGVAADIGAGLADALTAPLD
                     HKDKSLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIE
                     VDGQLITLESGEFQIYKQDHSAVVALQIEKINNPDKIDSLINQRSFLVSGLGGEHTAF
                     NQLPSGKAEYHGKAFSSDDPNGRLHYSIDFTKKQGYGRIEHLKTPEQNVELASAELKA
                     DEKSHAVILGDTRYGGEEKGTYHLALFGDRAQEIAGSATVKIREKVHEIGIAGKQ"
     gene            10678..11355
                     /gene="tsaB"
                     /locus_tag="ACFOCN_000441"
     CDS             10678..11355
                     /gene="tsaB"
                     /locus_tag="ACFOCN_000441"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HFC6969648.1"
                     /translation="MQADFNRPVLAVDTGTSYLSLALRADGETRLFHQEVGSRQSALI
                     LPEIRTLFRNAGITAADLGAIVYAKGPGAFTGLRIGIGVAQGLATPFDTPLIGIPTLD
                     AAASLPPPQSCILAAADARMGEVFYAWFDTLNRRRLSDYQVGRAADIRLPEGCAFSDG
                     IGSAFALEETPPFSGKPDMPTAADFLNLAAEGGFPAVAAAHAELLYVRNKIALTAKEQ
                     AERRARL"
     gene            11352..11792
                     /gene="rimI"
                     /locus_tag="ACFOCN_000442"
     CDS             11352..11792
                     /gene="rimI"
                     /locus_tag="ACFOCN_000442"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HFC6969649.1"
                     /translation="MNIRRAVYADCAALAALDAVCNPSAWTQRQFESALVSLSEQVFL
                     AEKDGGLAAFIVWQNLPDESELHLIATAPECRRQGIASALLEYWFAHLPEGTQRLLLE
                     VRAGNTAAQALYAAHGFSIAGRRKNYYRATDGQTEDAVLMEKIC"
     gene            11786..12520
                     /locus_tag="ACFOCN_000443"
     CDS             11786..12520
                     /locus_tag="ACFOCN_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6969650.1"
                     /translation="MLSARYLHLHEALGLGPMWLKQAAAVLPPKNTPATPAQARPQTV
                     RAAPIRPSQPHNGQARLETMKALETAAVPTRKPAPETETPLPGLSDGIAPVPAASGIT
                     KLAVVSLCPPIEDAVYGQLFHGKAGVLLDNILKAVGLDAAYVHKTSWVKTAAVGNPMP
                     SEQAVANALGQIARELDGCRAPAVLFLGQAFVQPERQTMIETLCGSRPFFIIDHPARL
                     LRQPELKARNWQVLKQLKHALQAGGS"
     gene            12582..13223
                     /gene="pyrE"
                     /locus_tag="ACFOCN_000444"
     CDS             12582..13223
                     /gene="pyrE"
                     /locus_tag="ACFOCN_000444"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HFC6969651.1"
                     /translation="MTDFRQDFLKFSLAQNVLKFGEFTTKAGRRSPYFFNAGLFNDGL
                     STLQLAKFYAQSIIESGIRFDMLFGPAYKGIILAAATAMMLAEKGVNVPFAYNRKEAK
                     DHGEGGVLVGAPLKGRVLIIDDVISAGTSVRESIKLIEAEGATPAGVAIALDRMEKGT
                     GELSAVQEVEKQYGLPVAPIASLNDLFILLQNNPEFGQFLEPVRAYRRQYGVE"
     gene            13297..13731
                     /locus_tag="ACFOCN_000445"
     CDS             13297..13731
                     /locus_tag="ACFOCN_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HFC6969652.1"
                     /translation="MPACFCPHCKTRLWVKETQLNVAQGFVVCQKCEGLFKAKDHLAS
                     TKEPIFNDLPEAVSDVKLVHRIGTCAIGKKQISRDEIAGILNGGTTLHDTPPATAATP
                     AAAPQVAVPPAAPARQEGFNWTIATLFALIVLIMQLSYLVIL"
     gene            13728..15038
                     /gene="argA"
                     /locus_tag="ACFOCN_000446"
     CDS             13728..15038
                     /gene="argA"
                     /locus_tag="ACFOCN_000446"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HFC6969653.1"
                     /translation="MIVPDLFVAHFREAVPYIRQMRGKTLVAGIDDRLLEGDTLNKLA
                     ADIGLLSQLGIRLVLIHGARHFLDRHAAAQGRTPHYCRGLRVTDETSLEQAQQFAGTV
                     RSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRF
                     QLDAGNIVWLPPLGHSYSGKTFYLDMLQTAASVAVSLQAEKLVYLTLSDGISRPDGTL
                     AETLSAQEAQSLAEHAGGETRRLISSTVAALEGGVHRVQILNGASDGSLLQELFTRNG
                     IGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREYLENHISEFSILEHD
                     GNLYGCAALKTFAEADCGEISCLAVSPQAQDGGYGERLLAHIIDKARSMGISRLFALS
                     TNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR"
     gene            15134..17149
                     /locus_tag="ACFOCN_000447"
     CDS             15134..17149
                     /locus_tag="ACFOCN_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family protein"
                     /protein_id="HFC6969654.1"
                     /translation="MKSYPDPYRHFENLDSAETQNFAAEANAETRARFLNNDKARALS
                     DGILNQMQDTRQIPFCQEHRARMYHFHQDAEYPKGVYRVCTAATYRSGYPEWKILFSV
                     ADFDELLGDDVYLGGVSHLVEKPNRALLTLSKSGGDTAYTLEVDLEAGELVEGGFHFP
                     AGKNQVSWRDENSVWVCPAWDERQLTESGYPREVWLVERGKSFEESLPVYQIDKDAMM
                     VNAWRYLDPQGSPIDLIEASDGFYTKTYLQVSAEGEAKPLNLPNDCDVVGYLAGHLLL
                     TLRKDWNRANQSYPSGALVAVKLNRGELGAAQLLFAPDETQALESVETTKRFVVASLL
                     ENVQGRLKAWRFADGKWQEVELPRLPSGALEMTDQPWGGDVVYLAAGDFTTPLTLFAL
                     DLNVMELTVMRRQPQQFDSDGIEVRQFWVMSSDGERIPYFHVGKNAAPDTPTLVYAYG
                     GFGVPELPHYLGSIGKYWLEEGNAFVLANIRGGGEFGPRWHQAAQGISKHKSVDDLLA
                     VVRDLSERGISSPQHIGLQGGSNGGLITAAAFVREPQSIGALVCEVPLTDMIRYPLLS
                     AGSSWTDEYGNPQKYEVCKRRLGELSPYHNLSDGIDYPPALITTSLSDDRVHPAHALK
                     FYAKLRETSPQSWLYSPDGGGHTGNGTQREAADELACVLLFLKEFLG"
     gene            complement(17263..18219)
                     /locus_tag="ACFOCN_000448"
     CDS             complement(17263..18219)
                     /locus_tag="ACFOCN_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6969655.1"
                     /translation="MNTAAIYRQYQTYVRSDKSGWALDGCSDSALIAQAKQPGLHLEM
                     CINRFDSGITLSRMRGGGTGAFPTEIHNFSHNCALFVMVSGQNRLQMGGREYRPSAGE
                     IWLVRGELADVSETLLPDNSGMCALHLDFSLEKLRRWHDEGLLDERLFSPQTIGRFAL
                     QRLAQNAAALTAAACPLLQRSFESDGFGLLADEAAALELSARLLRFTFRRHDNGYRRR
                     RIDEAADILQHEFARPLTIAEIARRVGLNECYLKRYFKAQTGETVAGCLRRLRLEHAL
                     ALIESGSTVQAAMHFCGYRHAGRFNEAFRRHYGFLPSDVKKC"
     gene            18455..19420
                     /locus_tag="ACFOCN_000449"
     CDS             18455..19420
                     /locus_tag="ACFOCN_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6969656.1"
                     /translation="MKPRFYWAACAVLLTACSPEPAAEKTVSAASASAATLTVPTARG
                     DAVVPKNPERVAVYDWAALDTLTELGVNVGATTAPVRVDYLQPAFDKAATVGTLFEPD
                     YEALHRYNPQLVITGGPGAEAYEQLAKNATTIDLTVDNGNIRTSGEKQMETLARIFGK
                     EARAAELKAQIDALFAQTREAAKGKGRGLVLSVTGNKVSAFGTQSRLASWIHGDIGLP
                     PVDESLRNEGHGQPVSFEYIKEKNPDWIFIIDRTAAIGQEGPAAVEVLDNALVRGTNA
                     WKRKQIIVMPAANYIVAGGSRQLIQAAEQLKEAFEKAEPVAAGKE"
BASE COUNT         4460 a         5911 c         5333 g         3929 t
ORIGIN      
        1 aattcaatcc actatatttc caagaaagcc cgttatgccc taccaacaaa tcaccatcaa
       61 cgtcaacgat gccgtcgccg aacgcctcgc cgacgcgctg atggaacacg gcgcactctc
      121 cgccgccatc gaagatgcct acgccggcac gcaaaacgaa caggcgattt tcggcgaacc
      181 cggtatgccc gccgaacaaa tctggcagca gagcaaagtc atcgccctgt tcggcgaaca
      241 cgacgaagcc gccgccatca tccaaatcgc cgcacaagaa tgcgggttaa aagacttggc
      301 atacaccggc gaaaccatcg aagaccaaga ctgggtgcgt ctcacgcaat cgcaattcga
      361 ccccatccga atttccgacc gcctgtggat taccccctct tggcacgaag cccccgaagg
      421 cactgccgtc aacctacgcc tcgatcccgg cctcgccttc ggcactggca gccacccaac
      481 cacgcgcctc tgcctcaaat ggctggatac gcaactcaaa aacggcgaaa gcgtcctcga
      541 ctacggctgc ggttcgggca tcctgaccat cgctgccctc aaactcggcg caggttctgc
      601 cgtcggcgtc gatattgacg aacaagccgt ccgcgccggc aaggacaacg ccgaacaaaa
      661 caacgtcgat gcacaattct tcctgcccga cggcctgcct caagggcaat tcgacgtagt
      721 tgtcgccaac atcctcgcca accctttacg tatgctcggc gaaatgctcg ccgcccgcac
      781 caaacaaggc ggccgcatcg tgttatccgg tttgttggac gaacaagccg aagaactcgg
      841 cggcatttac agccaatggt tcgatctcga cccggcggaa accgaagaag gctgggcgcg
      901 cttgagcggg acaaaacgct gaaacggaaa ggaaacaccg tgcaggacaa aaacaacctc
      961 tgctggctcg atatggaaat gacggggctt aatcccgaaa ccgaccgcat tatcgaagtc
     1021 gcgatgatta ttaccgactc ggatttgaat gtattggcgc aatccgaagt ttacgccgtc
     1081 caccaaagcg acgagctgct cgacaatatg gacgaatgga acaccgccac acacggtagg
     1141 acggggctga cacagcgcgt gcgcgaatcg ttgcataccg aagccgaagt cgaacagaaa
     1201 ctgctggact ttatgtcgga atgggtaccc ggacgcgcca cgccgatgtg cggcaactcc
     1261 atccaccaag accggcgttt tatggtcaaa tatatgccga aactggaaaa ctacttccac
     1321 taccgcaacc tcgacgtttc cacgctcaaa gagcttgcca aacgctggaa tccgtccgtt
     1381 gccaaaagcg tcgtcaaacg cggttcgcac aaggcattgg acgacatttt ggagagcatc
     1441 gaagaaatgc gccactaccg cgaacacttt ctgatttccg ccccgagagc cgaagcgcaa
     1501 taagaaacaa aaaatgccgt ctgaagcgca aatcctgcat ttcagacggc atttttacag
     1561 cagattgaaa tcaaaaatat acacgcccgt cattcccgcg caggcgggaa tccggaaggt
     1621 cgggcctgcc gttattttca atcattacag aaactgaaag gtctggattc ccgcctgcgc
     1681 gggaatgacg ggcgtgtgca ttcttatagt ggattaacaa aaatcaggac aaggcgacga
     1741 agccgcaaac agtacaaata gtacgaaacc gattcacttg gtgcttcagc accttagaga
     1801 atcgttctct ttgagctaag gcgaggcaac gccgtactgg tttttgttaa tccactatac
     1861 ttcaatctgc caaacagatc gaacagagaa actctgtccg tcaaaacatc atgcagccat
     1921 cgccttgaac acttcaaccg caaccgcaac cgtttcgtca atcagctcgg gcgtatgcgc
     1981 ggcagaaacg aaacctgctt cataagcgga cgggccgaag gcaatgccgc ggtcgagcat
     2041 accgtggaag aagcgtttga aagcgtcaat attggaacgc gccatatcgg cataatttcg
     2101 cggcgcgtgt gcggcgaaat acagaccgaa cataccgccc acgctgtcgg cggtgaactc
     2161 gatgcccgcc gcatccgctg ccgtccgaaa accttgaacc aactgttcgg tacgcgccgt
     2221 caggttttca taaaaccctt cgcggcggat gatttccagc gttttcaaac cggcggcgac
     2281 ggcaatcggg ttgcccgaca aggtgcctgc ctgatacacg ccgcccagcg gggaaataca
     2341 ttccataatg tctttgcgtc cgccgaacgc ggcaagtggc ataccgccgc cgatgacttt
     2401 gcccatcgtg gtcaggtcgg gcgtgatgcc gtgcagcgat tgtgcgccgc cgagcgcgac
     2461 gcggaaaccg gtcatcactt cgtcgtaaat caacactgcg ccgtgttttt cggtcaattc
     2521 gcgcagggct ttgacgaagg cttcagacgg cctaaccaga ttcatattgc cgacaaaagg
     2581 ctccaaaatc acacaggcaa tgtcattgcc gctttgagca aaggcttctt cgagttgggc
     2641 gatgttgttg tattcgagga ctaaagtgtg tttggtaaag tcggcaggca caccggcgga
     2701 agagggatta ccgaaggtga gcagaccgct gcctgctttc accaacaggc tgtcggaatg
     2761 gccgtggtag cagccttcaa atttgatgat tttgtcacgg ccggtaaagc cgcgtgccag
     2821 acggatggcg gtcatggtgg cttcggtacc ggagctgaca aggcgcagcc gttcgacgga
     2881 cggcatgatt ttggcgattt cttcggcaat gacgatttcg ccttcggtag gcgcgccgaa
     2941 cgacaaaccg cccaaggcag cttcgcgcat ggcttcgatg acttcggggt gcgcgtgtcc
     3001 gacaatcgcg ggcccccacg aaccgacata gtcggtgtag cgcgtgccgt tttcgtccca
     3061 aacatacgcg ccttcggctt ttttgatgaa gcgcggcacg ccgccgacgc tgccgaatgc
     3121 gcggacgggg gaattcacgc cgccggggat gatggctttg gcgcggtcga ataaaatttc
     3181 gttacggttc atatttatcc tcaaatgccg tctgaacggc aggtttcggg cttagaagca
     3241 gaaagtccca ttttatcatt tttcaggttg cgacaaggat ttgcctgctt ctttgcggat
     3301 gacgccaacc gcatcccgga tgacggaacg ctcgtctttt tccactttat gtgtaaagcg
     3361 gtagtcccgg acaactcctt cccagtcgta atccacacac cactcccaat gccggcgttc
     3421 tgatttcata taaatgaaat tggtcggcaa aaaattataa atcggcaggc tgacttcatg
     3481 ataggcataa caaccgaaag ggttgcgctt cccgaaacgt gcctctacct ccgcccgagt
     3541 cgttttgcct ttaacaaccg tttgtgcgat tccctcttcc gtctgatata gtggattaac
     3601 aaaaatcagg acaaggcgac gaagccgcag acagtacaaa tagtacggca aggcgaggca
     3661 acgctgtact ggtttttgtt aatccactat aacgcaggaa ctgatgttcc ctgtcgccga
     3721 aattgctggt acacgcacac agcagcaatg ccgcccacac agccggtttc atacacacct
     3781 cccattaaag ccaaacatta tacagccgtt ctgaccgatt aaattcatat tttaaaacaa
     3841 tattctgttt acaaaaccca catcgtgcta taatccgcac cgattttcag acggcatcgt
     3901 catgccgtct gaaatttttt cattccaaca accatcagcc ccgcgattac ggctgcctga
     3961 gaaagacaca aaccatgaaa aaagtattta tccgtacctt cggctgccag atgaacgaat
     4021 acgacagcga caaaatgctc gccgtcctcg ccgaagaaca cggcggcatc gaacaggtta
     4081 cccaagccga cgaagccgac atcatcttgt tcaacacctg ctccgtgcgc gaaaaagcac
     4141 aggaaaaagt gttctccgat ttggggcgcg tgcgtccgct caaagaaaaa aaccccggcc
     4201 tcatcatcgg cgttgccggc tgcgtcgcct cgcaagaagg cgaaaacatc atcaaacgcg
     4261 cgccttatgt tgacgtggtc ttcggcccgc aaacgctgca ccgcctgccc aaaatgattg
     4321 tggacaaaga aaccagcggg ctgtcgcaag tcgatatttc cttccccgaa atcgaaaaat
     4381 tcgaccacct gccgcccgcc cgcgtcgaag gcggcgcggc atttgtatcg attatggaag
     4441 gctgttccaa atactgctca ttctgcgtcg tcccctacac gcgcggcgaa gaattctccc
     4501 gcccgctcaa cgacgtattg acagaaatcg ccaaccttgc ccagcaaggc gtgaaagaaa
     4561 tcaacctctt gggacaaaac gtcaacgcct atcgcggcga aatggacgac ggcgaaatct
     4621 gcgacttcgc caccctgctg cgcatcgtcc acgaaatccc cggcatcgaa cgtatgcgct
     4681 tcaccaccag ccacccgcgc gagtttaccg actcgattat cgagtgctac cgcgacctgc
     4741 ccaaattggt ttcccacctg cacctgccga ttcaaagcgg ttccgaccgc gtattgagcg
     4801 cgatgaaacg cggctacacc gctttggaat acaaatccat catccgcaaa ctgcgtgcca
     4861 tccgtcctga tttatgcctg agcagcgatt tcatcgtcgg cttccccggc gagaccgaac
     4921 gcgagttcga gcaaaccttg aaactggtga aagacattgc cttcgacttg agcttcgtgt
     4981 ttatttacag tccgcgcccc ggcacgcctg ccgccaacct gcacgacgac acgccgcacg
     5041 aagaaaaagt gcgccgcctc gaagccttga acgaagtcat cgaagccgaa accgcgcgca
     5101 tcaaccaaac catgatcggc acggttcaac gctgcctggt cgaaggcatc tccaaaaaag
     5161 accccgacca actgcaagcc cgtaccgcca acaaccgcgt cgtcaacttc accggcacgc
     5221 ccgacatgat taaccaaatg atcgatttgg aaatcaccga ggcctacacc ttctccctgc
     5281 gcggcaaagt tgtcgaagcc taaaccctca cgccgaaaaa atgccgtctg aagcgtttca
     5341 gacggcattt tgccttgtat cggcagacga cggcgcggcc gggcggctta atttgccgca
     5401 tcccgatccg acagccacgc gcgcacacgc cgttccaccg cttcggcact caagcccaaa
     5461 tcgtctaaaa gttttttcgg atcgccgtgt ccggttacgg tatcggcaac gcccaaaagc
     5521 aaaacgggtt tgcagatacc gtgtttcgcc aatacttcca gcaccgcgcc gcctgcgccg
     5581 ccctgttcgg cgttttcttc aagggtaacg atgcggtcgt ggcttcgggc aaggcggaca
     5641 atcaactctt cgtctatcgg tttgacaaag cgcatatcgg cgacggtggc gttcagtttt
     5701 ccggcgaccg ccaatgcggg ggcgaccata ctgccgaagg caatgaatgc ggttttccca
     5761 ccttcgcggc ggataatgcc cttgccgatt tccacggttt ccatgccgtc tgaaaccggc
     5821 gcgcccgtac ccgtgccgcg cggatagcgg acggcggcgg gcgcatccgc ctgatagcag
     5881 gtcgaaagca gcaggcggca ttcgttttca tcgctcggcg cggcgacaat catattcgga
     5941 atgcaacgca agaagctcaa atcgtacaaa ccggcgtggg tcgggccgtc cgcgccgacg
     6001 atgcccgcgc ggtcgacggc aaacaaaacg ggtaggtttt gcagggcgat atcgtgcacc
     6061 agttggtcgt aggcgcgttg taaaaaggtg gaataaatcg ccacgacggg cttcatgcct
     6121 tcgcacgcca aaccgccggc aaaggtaacg gcgtgctgct cggcaatacc gacatcgaaa
     6181 taacggtcgg ggaatcgttg ttcaaactcc accagtccgc tgccctcgcg catcgcgggc
     6241 gtgatggcga tcaaacgctc gtctgccgcc gcccggtcgc acagccattt gccgaacact
     6301 tgggtatagg tcggtttggc gacgggcttg ggttcttttt cagacggcat ttgcgccgcg
     6361 ccttctttag gcagcttggc gacggcgtgg tatttgacgg ggtcgttttc ggcgagtttg
     6421 tagccgttgc cttttttggt gatgacgtgc agaagctgag ggcctttgcg gctgcgcaag
     6481 tctttcaata cgtccaccag attttcgacg ttgtgtccgt ccacggggcc ggtatagcgg
     6541 aagccgaagt tttcaaacaa agacagcgac tgtttggcgt gttcggcttc ttcggcaagg
     6601 gttttgattt tgtgttcgac tttttgggca aactccatcg cgccgggtat tttgtctaat
     6661 accttgcccg tttgcgcttt gacggtactc aacaggccgt gcatatcgcg cacgacgttg
     6721 ctggcaaggt atttcggcag cgcgccgacg ttgggggaaa tcgacatttc gttgtcgttg
     6781 aggacgacca gcaaatccac atccatatcg cctgcgcagt tcagggcttc aaacgcctga
     6841 ccagccgtca tggctccgtc gccgatgatg gcgacgctgc ggcggttgtt gcccaactgt
     6901 ttgtccgcaa cggccatgcc caaggccgcg ccgatggatg tggaagaatg ccctacgccg
     6961 aacgcgtcgt attccgactc gctgcgtttt gggaagccag ctaaaccgcc gtattggcgc
     7021 atggtgtgca tctggttttt cctgcctgtc aggattttgt gcggatagct ttggtgtccg
     7081 acatcccaca ccagcttgtc ttcgggcgtg tcgtacacat agtgcagggc gatggtcagt
     7141 tcgaccgcgc ccagattgct ggcgaaatgc ccgccggtct gcccgacaga ttccagcaga
     7201 aaggcacgca actcgccggc aaggcgcggc agctgttttt tgtccagacg gcgcaaatct
     7261 tgcgggctgt caatcaggtc gagtaggggg cttgggttca tggtgtgtct tttttatgtg
     7321 tcgtccgggt gcaacggtca attatatatc aagagcgtgc ggctgacggc tgattttgcc
     7381 gtatgtcatt cgtcccgccg cttggcgcgc gggtgggctt cgtcatacag gcgggcgatg
     7441 tggtcgaaat cgagtttggt gtaaatctgc gtggtcgaaa ggctgctgtg tccgagcagc
     7501 tcctgcaccg cccggatgtc gcgcgaagcc tgcaacaggt gtccggcata gctgtggcgc
     7561 atcatatgcg gcgaaacgtg tctgccgtct ccgttttgcg ccgcccattg cgccaaacgt
     7621 ttttggattt ggcgttggct caggcgcgtg ccgttcctgc cggtaaacag ggctttgccg
     7681 tccgatgccg tctgacgcag cggcagatag tttttcaggg cttccacgct tttgccggtc
     7741 agcggcacct gccgctgctt gcgccctttg ccggtaacgt gtacccacgc ctcgtccaaa
     7801 tagacatcat ctgcattcaa gccgtgtatc tcgctcacgc gcaaaccgct gccgtacatc
     7861 agctcgaaca gggcgtgatc gcgcaccgcc agcgggtcgc cgccgtccac gggcaaatcc
     7921 agcatccggt tcagccattc ctgcggcagg gctttgggta cgcgctcggg ctgcttcggc
     7981 ggtttgatgt cggcggtcgg gtcggtatgc agcagaccgc gttccaccag ccaaacacaa
     8041 tactgccgcc aagacgacag cttgcgcgcc agcgtccgcg cattcaaacc gcgctgcgac
     8101 agccgccgca acgccgccgt aaaatcgcgc cgcgacaagt cctgcggcac gccgcctgca
     8161 tcttcagacg gcatttgtgc caacagcgca aacagttctt ccaaatcgcg ccggtatgcc
     8221 gccaccgtgt gctccgactt gccctcgcgc acgatgtttt ccaaataagc gtcaaaatgc
     8281 gccgcaaacc cgtccaaaac cataaccgcc ccacacaaat atcaaaaaaa cagtgaaaac
     8341 attatcataa acgacacacc aaaaccccga accgcccaaa atccgacccg tccgcccgcc
     8401 gttatcgtta acataaaatc aatgagccgt ttatggtttt ttgccgcaaa aaacattata
     8461 atccgcctta tttacctatt gcccaaggag acacaaatgg cactcgtatc catgcgccaa
     8521 ctgcttgatc atgctgccga aaacagctac ggcctgcccg cgttcaacgt caacaacctc
     8581 gaacaaatgc gcgccattat ggaagccgcc gaccaagtca acgcgcccgt catcgtacag
     8641 gcgagtgcag gtgcgcgcaa atatgcgggc gcgccgtttt tgcgccacct gattctggcg
     8701 gctgtcgaag aatttccgca catccccgtc gtgatgcacc aagaccacgg cgcatcgccc
     8761 gacgtgtgcc aacgctccat ccaactgggc ttttcctccg tgatgatgga cggctcgctg
     8821 atggaagacg gcaaaacccc ttcttcttat gaatacaacg tcaacgccac ccgtaccgtg
     8881 gttaatttct cccacgcttg cggcgtatcc gtcgaaggcg aaatcggcgt gttgggcaac
     8941 ctcgaaactg gcgaagccgg cgaagaagac ggtgtaggcg cagtgggcaa actttcccac
     9001 gaccaaatgc tcaccagcgt cgaagatgcc gtgcgtttcg ttaaagatac cggcgttgac
     9061 gcattggcga ttgccgtcgg caccagccac ggcgcgtaca aattcacccg tccgcccaca
     9121 ggcgacgtgt tgcgtatcga ccgcatcaaa gaaatccacc aagccctgcc caatacacac
     9181 atcgtgatgc acggttccag ctccgttccg caagaatggc tgaaagtcat caacgaatac
     9241 ggcggcaata tcggcgaaac ctacggcgtg ccggttgaag aaatcgtcga aggcatcaaa
     9301 cacggcgtgc gcaaagtcaa catcgatacc gacttgcgcc ttgcttccac cggcgcggta
     9361 cgccgctacc ttgccgaaaa cccgtccgac ttcgatccgc gcaaatattt gagcaaaacc
     9421 attgaagcga tgaagcaaat ctgcctcgac cgctacctcg cgttcggttg cgaaggtcag
     9481 gcaggcaaaa tcaaaccggt ttccttggaa aaaatggcaa accgttatgc caagggcgaa
     9541 ttgaaccaaa tcgtcaaata acaggttgct tgtaaacaaa atgccgtctg aaccgttgtt
     9601 cggacggcat ttgatttttg cttctttgac ctgcctcatt gatgcagtat gcaaaaaaag
     9661 ataccataac caaaatgttt atatattatc tattctgcgt atgactagga gcaaacctgt
     9721 gaaccgaact gccttctgct gcctttcttt gaccgccgcc ctgattctga ccgcctgcag
     9781 cagcggaggc ggcggtgtcg ccgccgacat cggcgcgggg cttgccgatg cactaaccgc
     9841 accgctcgac cataaagaca aaagtttgca gtctttgacg ctggatcagt ccgtcaggaa
     9901 aaacgagaaa ctgaagctgg cggcacaagg tgcggaaaaa acttatggaa acggcgacag
     9961 cctcaatacg ggcaaattga agaacgacaa ggtcagccgc ttcgacttta tccgtcaaat
    10021 cgaagtggac gggcagctca ttaccttgga gagcggagag ttccaaatat acaaacagga
    10081 ccactccgcc gtcgttgccc tacagattga aaaaatcaac aaccccgaca aaatcgacag
    10141 cctgataaac caacgctcct tccttgtcag cggtttgggt ggagaacata ccgccttcaa
    10201 ccaactgccc agcggcaaag ccgagtatca cggcaaagca ttcagctccg acgacccgaa
    10261 cggcaggctg cactactcca ttgattttac caaaaaacag ggttacggca gaatcgaaca
    10321 cctgaaaacg cccgagcaga atgtcgagct tgcctccgcc gaactcaaag cagatgaaaa
    10381 atcacacgcc gtcattttgg gcgacacgcg ctacggcggc gaagaaaaag gcacttacca
    10441 cctcgccctt ttcggcgacc gcgcccaaga aatcgccggc tcggcaaccg tgaagataag
    10501 ggaaaaggtt cacgaaatcg gcatcgccgg caaacagtag catttgaaaa atgccgtccg
    10561 aacacaataa tttaccgttc ggacggcatt tttgcgccat accgccctag gacacgacgg
    10621 cacggcaggc aagccgattt cactatataa tgccgtctga accaacgaga gaatgccatg
    10681 caagctgatt tcaaccgccc cgtcctcgcc gtcgataccg gaacttccta tttgtcgctc
    10741 gcgctgcgcg ccgacggcga aacccgtctg ttccatcagg aagtcggcag ccgccagtcc
    10801 gcactgatcc tgccggaaat ccgcacccta ttccgaaatg caggcattac cgccgccgat
    10861 ttgggggcga ttgtttatgc gaaaggcccc ggcgcgttta cgggactgcg tatcggtatc
    10921 ggcgtggcgc aaggtttggc aacgccgttt gatacgcctt taatcggcat ccccacgctc
    10981 gatgccgccg cctcgctgcc gccgccgcaa agctgcatac tcgccgctgc ggacgcgcgt
    11041 atgggcgaag tgttttatgc gtggttcgac acgctgaacc gccgccgttt gagcgattat
    11101 caggtcgggc gggcggcaga catccggctg ccggagggat gtgccttttc agacggcata
    11161 ggcagcgcgt tcgcgttgga agaaacgccg ccgttttcag gcaaacccga tatgccgacc
    11221 gccgccgact tcctcaatct ggcggctgaa ggcggttttc ccgccgtcgc tgcggcacac
    11281 gccgagctgc tctacgtccg caacaaaatc gccctgactg ccaaagaaca ggcggaacgg
    11341 agggcgcgcc tgtgaacatc cgccgcgccg tttatgccga ttgcgcggca ctcgccgcac
    11401 tcgatgccgt ctgcaacccg tccgcgtgga cgcaacgcca atttgagtct gcattggttt
    11461 cgctgtccga acaggttttc ctcgcggaaa aagacggcgg gttggccgcc tttatcgttt
    11521 ggcagaacct gcccgacgaa tccgaactgc acctgattgc caccgcgccc gaatgccgcc
    11581 gccaaggaat tgcgtccgcc ctgctcgaat attggttcgc acatctgccc gaaggcacgc
    11641 aacgcctgct gctcgaagtc cgcgcaggca acaccgccgc gcaggcactg tacgcggcgc
    11701 acggcttcag cattgcgggc aggcggaaaa actattaccg cgccaccgac gggcaaaccg
    11761 aagatgccgt cttaatggag aaaatatgtt aagcgcgcgc tacctccacc tgcacgaagc
    11821 tttgggtttg ggtccgatgt ggctgaaaca ggccgctgcc gtcctgccgc ccaaaaacac
    11881 acccgcaacc ccggcacagg cacgtcctca aaccgtccgc gccgccccga tccgcccttc
    11941 ccaaccccat aacggtcagg cgcggctcga aacgatgaaa gcgttggaaa ccgccgccgt
    12001 acctacgcgc aaacccgcgc ctgaaaccga aacgcctctg cccggccttt cagacggcat
    12061 cgcccccgtt cccgccgctt cgggcatcac caagcttgcc gtcgtcagcc tttgcccacc
    12121 gatcgaggat gcggtttacg ggcaactgtt ccacggcaaa gcgggtgtcc tgcttgacaa
    12181 catactcaaa gccgtaggac tggatgccgc ttatgtacac aagaccagct gggtgaaaac
    12241 cgccgccgtc ggcaacccga tgccgtctga acaggccgtc gcgaatgcgc tgggtcaaat
    12301 cgccagggaa ctcgacggct gccgtgcccc cgccgtcctt ttcctcgggc aggcttttgt
    12361 ccagcctgaa cggcaaacga tgattgaaac tttgtgcggc agccgtccct tcttcatcat
    12421 cgaccatccc gctcggcttt tacgccaacc cgaacttaaa gcccgaaact ggcaggtgtt
    12481 gaaacagttg aaacacgcct tgcaggcagg cggcagttga agcaggccgc acggggcggt
    12541 agaatcgcaa ctgcgtccca atatctgaca gaaagcacaa aatgaccgat ttccgccaag
    12601 atttcctcaa attctccctc gcccaaaatg ttttgaaatt cggcgaattc accaccaaag
    12661 ccggacggcg gtcgccctat ttcttcaatg ccggcctctt taacgacggc ttgtccacgc
    12721 tgcaactggc aaaattctat gcacaatcca tcattgaaag cggcatccga ttcgatatgc
    12781 tgttcggtcc cgcctacaaa ggtattattt tggcggcggc aaccgcgatg atgctggcgg
    12841 aaaaaggcgt gaacgtcccg tttgcctaca accgcaaaga agccaaagac cacggcgaag
    12901 gcggcgtgtt ggtcggcgcg ccgcttaaag ggcgcgtgct gattatcgac gacgtgattt
    12961 ccgccggcac atccgtacgc gaatcgatca aactgattga agcggagggt gcaacccccg
    13021 ccggtgtcgc catcgcgctc gaccgcatgg aaaaaggcac gggtgaattg agcgcggttc
    13081 aggaagtgga aaaacaatac ggtctgcccg tcgcccccat cgccagcctg aacgatttgt
    13141 ttattctgtt gcaaaacaac cccgaattcg gacagttcct cgaacccgtc cgagcctacc
    13201 gtcggcagta cggcgtagaa taaaaacaaa gcatatgccg tccgaaccgc cttacgcctc
    13261 agacggcatc aaacctgaca cacacgagga aataccatgc ccgcctgttt ctgcccccac
    13321 tgcaaaaccc gtctctgggt caaagaaacc caactcaatg tcgcccaagg cttcgtcgtc
    13381 tgccaaaaat gcgaaggact gtttaaagcc aaagaccatt tggcaagcac gaaagaaccc
    13441 atattcaacg atttgcccga ggctgtttcg gatgtcaaac tcgttcaccg catcggcacg
    13501 tgcgccattg gcaagaaaca gatttcccgc gacgaaatcg ccggcatcct caacggcggt
    13561 acaaccctgc acgatacgcc gcccgcaacc gccgccaccc ctgccgccgc accgcaggtt
    13621 gccgtaccgc ccgccgcgcc tgcccgtcag gaagggttca actggacgat tgcaaccctg
    13681 tttgccctta tcgtcctcat tatgcagctt tcctacctcg tcatcctatg atcgtgcccg
    13741 acctctttgt cgcccacttc cgcgaagccg tcccctacat ccgccaaatg cgcggcaaaa
    13801 cgctggtcgc cggcatagac gaccgcctgc tcgaaggtga taccttaaac aagctcgccg
    13861 ccgacatcgg gctgttgtcg caactgggca tcaggctcgt cctcatccac ggcgcgcgcc
    13921 acttcctcga ccgccacgcc gccgcgcaag gccgcacgcc gcattattgc cggggcttgc
    13981 gcgttaccga cgaaacctcg ctcgaacagg cgcagcagtt tgccggcacc gtccgcagcc
    14041 gttttgaagc cgcattgtgc ggcagcgttt ccgggttcgc gcgcgcgcct tccgtcccgc
    14101 tcgtatcggg caacttcctg accgcccgtc cgataggtgt gattgacgga accgatatgg
    14161 aatacgcggg cgttatccgc aaaaccgaca ccgccgccct ccgtttccaa ctcgacgcgg
    14221 gcaatatcgt ctggctgccg ccgctcggac attcctacag cggcaagacc ttctatctcg
    14281 atatgcttca aaccgccgcc tccgtcgccg tctcgcttca ggccgaaaaa ctcgtttacc
    14341 tgaccctttc agacggcatt tcccgccccg acggcacgct cgccgaaacc ctctcggcac
    14401 aggaagcgca atcgctggcg gaacacgccg gcggcgaaac gcgacggctg atttcgtcca
    14461 ccgttgccgc gctcgaaggc ggcgtgcatc gcgtccaaat cctcaacggt gcctccgacg
    14521 gcagcctgct gcaagaactc ttcacccgca acggcatcgg cacatccatt gccaaagaag
    14581 ccttcgtctc catccggcag gcgcacagcg gcgacatccc gcacatcgcc gccctcatcc
    14641 gcccgctgga agaacagggc atcctgctgc accgcagccg cgaatacctc gaaaaccaca
    14701 tttccgaatt ttccatcctc gaacacgacg gcaacctgta cggttgcgcc gccctgaaaa
    14761 cctttgccga agccgattgc ggcgaaatct cctgccttgc cgtctcgccg caggcacagg
    14821 acggcggcta cggcgaacgc ctgcttgccc acattatcga taaggcgcgc agtatgggca
    14881 taagcaggct gttcgccctc tccacaaata ccggcgaatg gtttgccgaa cgcggctttc
    14941 agacggcatc ggaagacgag ttgcccgaaa cgcggcgcaa agactaccgc agcaacggac
    15001 gaaactcgca tattctggta cgtcgcctgc accgctgacc gcaacggaaa gccgccgcag
    15061 aaatgccgtc tgaaccccgt ttcagacggc atttccccga ttataaagac ctgcccaacc
    15121 ctcaaggacc ccgatgaaat cctaccccga cccctaccgc cattttgaaa acctcgattc
    15181 cgccgaaacg caaaacttcg ctgctgaagc gaatgccgaa acgcgcgcgc gttttttaaa
    15241 caacgacaag gcgcgcgcgc tttcagacgg cattttgaat caaatgcagg acacgcggca
    15301 gattccgttt tgtcaggaac accgcgcgcg gatgtaccat ttccatcagg acgcggaata
    15361 tccgaagggc gtgtaccgcg tgtgcacggc ggcgacctac cgttcgggct atccggagtg
    15421 gaaaatcctg ttttcagtgg cggacttcga cgaattgctc ggcgacgatg tatatttggg
    15481 cggcgtgtcg cacttggtgg aaaagcccaa ccgcgcgttg ttgacactaa gcaaatcagg
    15541 cggcgatacg gcgtacacgc tggaagtgga tttggaagca ggggaattgg tagaaggtgg
    15601 ttttcacttt ccggcaggca aaaaccaagt gtcgtggcgc gatgaaaaca gcgtgtgggt
    15661 gtgtccggct tgggacgaac gccagttgac cgaatcgggc tatccgcgtg aggtgtggct
    15721 ggtggaacgc ggcaagagtt tcgaggaaag cctgcctgtg tatcaaatcg ataaagatgc
    15781 aatgatggtg aacgcgtggc gttatctcga tccgcagggt tcgccgattg atttgattga
    15841 agcgtcggac ggtttttaca ccaaaaccta tttgcaggtg tcggccgaag gcgaggcgaa
    15901 accgttaaac ctgcccaacg attgcgatgt ggtcggctat ctggcggggc atcttttgct
    15961 gacgctgcgc aaggactgga accgcgcgaa ccaaagctat ccgagcggtg cgctggtggc
    16021 ggtgaagctg aatcggggtg aactcggggc ggcgcagctt ttgtttgcgc ctgatgaaac
    16081 gcaggcattg gaaagcgtgg aaacgaccaa gcgttttgtg gtggcgagcc tgctggaaaa
    16141 cgtacaaggc cgtctgaaag cgtggcgttt tgccgacggc aaatggcagg aagtcgaact
    16201 gccgcgcctg ccttcgggcg cgttggaaat gaccgaccag ccttggggcg gcgacgtggt
    16261 ttaccttgcc gccggcgatt tcaccacacc gctgacgctg tttgcgctgg atttgaacgt
    16321 gatggaactg accgtcatgc gccgccagcc gcagcagttc gattcagacg gcatcgaagt
    16381 gcggcagttt tgggtgatgt cgtccgacgg cgaacgcatc ccttatttcc acgtcggcaa
    16441 aaacgccgcg cccgacacgc cgacgctggt ttatgcctac ggcggtttcg gcgtacccga
    16501 gctgccgcat tatctgggca gcatcggcaa atactggctg gaagagggca acgccttcgt
    16561 gttggcgaac atacgcggcg gcggcgagtt cggcccgcgc tggcatcagg cggcgcaggg
    16621 aatcagcaaa cacaaaagcg tcgatgattt gcttgccgtc gtgcgcgatt tgtccgagcg
    16681 cggcatcagt tcgccccaac acatcggttt gcagggcggc agcaacggcg gcctgattac
    16741 cgccgccgcc ttcgtgcgcg aaccgcaaag cataggcgca ctggtgtgcg aagtgccgct
    16801 gaccgacatg atccgttatc cgctgctctc cgccggttca agctggacag acgaatacgg
    16861 caatccgcaa aaatacgaag tctgcaaacg ccggttgggc gaattgtcgc cgtatcacaa
    16921 tctttcagac ggcatcgatt atccgcccgc gctcatcacc accagcctca gcgacgaccg
    16981 cgtccatccc gcccacgcgc tcaagtttta cgccaaactg cgcgaaacct cgccgcaatc
    17041 ttggctctac tcgcctgacg gcggcggcca taccggcaac ggcacgcagc gcgaagccgc
    17101 cgacgaactc gcctgcgtgt tgctgttttt gaaagagttt ttgggctaag ggcggggagc
    17161 ggcactgccg ccgcgaatga aaaaaggtcg tctgaaactg ctttttcaga cgaccttttt
    17221 taatggttgt ttcaaatcaa aatatctatg ccgccggccc catcagcact tcttcacatc
    17281 cgaaggcaaa aatccgtaat gccgtctgaa cgcttcgttg aaccgtcccg cgtggcggta
    17341 gccgcaaaag tgcatggcgg cttggacggt gctgccggat tcgatgaggg cgagcgcgtg
    17401 ttccagccgc aggcggcgca ggcatccggc gacggtttcg ccggtttgcg ctttgaaata
    17461 gcgtttcagg tagcattcgt tcagtccgac gcggcgggcg atttcggcga tggtcagcgg
    17521 acgggcgaat tcgtgttgca ggatgtcggc ggcttcgtct atgcgccgac ggcggtaacc
    17581 gttgtcgtgg cggcggaagg tgaagcgcaa taatcgggcg gagagttcca gcgcggcggc
    17641 ttcgtcggca agcaggccga agccgtccga ttcgaacgag cgttgcagca gtgggcaggc
    17701 cgccgccgtc agtgccgctg cgttttgcgc cagccgttgc agggcgaatc ggcctatcgt
    17761 ttgcggcgaa aacaggcgtt cgtccagcaa gccttcgtcg tgccagcggc gcagtttttc
    17821 cagcgaaaaa tccaaatgca gcgcgcacat gccgctgttg tcgggcagca gggtttcgga
    17881 tacgtccgcc aactcgccgc gtaccagcca gatttcgccg gcagacgggc ggtattccct
    17941 gccgcccatt tgtaaccggt tctgccccga caccatgacg aacaaggcgc agttgtggct
    18001 gaaattgtgg atttcggtgg gaaacgcgcc cgttccgccg ccgcgcatcc gcgacaaggt
    18061 gatgcccgag tcgaagcggt tgatgcacat ttccagatgc aaaccgggct gttttgcctg
    18121 cgcaatgagc gcgctgtcgg aacagccgtc caacgcccag ccggatttat cggagcggac
    18181 ataggtttgg tactggcggt agatggcggc ggtgttcatg attggatagg aacgagttgt
    18241 ctaacaaatg aattaaatag gaattattac caataatcaa gcgcagggat tggttgaaac
    18301 ggaaaaggtc gtctgaaagg gtgtttcaga cgaccttttc cgtatcggga atttgttttg
    18361 ccgtatcggg aattttgcgt tttgcggcgt ggtttctgca ggttgtttgc ttaataataa
    18421 acattcttat tcgtatgcaa aggaaccgca caccgtgaaa ccgcgttttt attgggcagc
    18481 ctgcgccgtc ctgctgaccg cctgttcgcc cgaacctgcc gccgaaaaaa ctgtatccgc
    18541 cgcatccgca tctgccgcca cactgaccgt gccgaccgcg cggggcgatg ccgttgtgcc
    18601 gaagaatccc gaacgcgtcg ccgtgtacga ctgggcggcg ttggatacgc tgaccgaatt
    18661 gggcgtgaat gtgggcgcaa ccaccgcgcc ggtgcgcgtg gattatttgc agcctgcatt
    18721 tgacaaggcg gcaacggtgg ggacgctgtt cgagcccgat tacgaagccc tgcaccgcta
    18781 caatcctcag cttgtcatta ccggcgggcc gggcgcggaa gcatatgaac agttggcgaa
    18841 aaacgcgacc accatagatc tgacggtgga caacggcaat atccgcacca gcggcgaaaa
    18901 gcagatggag accttggcgc ggattttcgg caaggaagcg cgcgcggcgg aattgaaggc
    18961 gcagattgac gcgctgttcg cccaaacgcg cgaagccgcc aaaggcaaag gacgcgggct
    19021 ggtgctgtcg gttacgggta acaaggtgtc cgccttcggc acgcagtcgc ggttggcaag
    19081 ttggatacac ggcgacatcg gcctaccgcc tgtagacgaa tctttacgca acgaggggca
    19141 cgggcagcct gtttccttcg aatacatcaa agagaaaaac cccgattgga ttttcatcat
    19201 cgaccgtacc gccgccatcg ggcaggaagg gccggcggct gtcgaagtat tggataacgc
    19261 gctggtacgc ggcacgaacg cttggaagcg caagcaaatc atcgtcatgc ctgccgcgaa
    19321 ctacattgtc gcgggcggct cgcggcagtt gattcaggcg gcggagcagt tgaaggaggc
    19381 gtttgaaaag gcagaacccg ttgcggcggg gaaagagtag ggagtcgtct gaaaacggag
    19441 tttccgaagg aagcgggggg tttctgcgaa gctaaagtgc ggtttcaacg aattgaaaag
    19501 cagcctgtat gttgaaaata ccgctcaagc aaacctacgg tttgccgccc tctccctagc
    19561 cctctcccac agggagaggg gattggggtg caggctgcct ttaaggttta ggcaaatttt
    19621 taacttcgtt gaa
//
LOCUS       DAXIFD010000016        18789 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.016, whole genome shotgun sequence.
ACCESSION   DAXIFD010000016 DAXIFD010000000
VERSION     DAXIFD010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18789
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.016"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..801
                     /locus_tag="ACFOCN_000450"
     CDS             <1..801
                     /locus_tag="ACFOCN_000450"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6969657.1"
                     /translation="RTPNIKYIYQDNQGLSEARNTGIKNSNGKYIVFIDSDDFINCQV
                     LLDFLSKDDIDMPDVVFLNAVKYDKGSVSYFGEDYQPEKILNQSKVEVLKGLCRFRKF
                     PGSAWNKIIKRELIIKEKLFFEKGIYSEDVEWSMRLFNAATTFSYLDGCYYYYRQGRE
                     DSITGTVSEKSIKSLLYILEKNAEMEFNRDISSYLYSFLSYEYLVLLFIMTSKNIACD
                     ADIKRRAYHLRFMLLKSNKLIYKLIFPIITLFGVDITGRILKAIRGNI"
     gene            842..1372
                     /locus_tag="ACFOCN_000451"
     CDS             842..1372
                     /locus_tag="ACFOCN_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HFC6969658.1"
                     /translation="MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVL
                     RGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNR
                     VLVGMGTTVLDDAVIEDEVMIGAGSLVPPRKRLAGGYLYVGSPVRQVRVLTDEEKAFL
                     KYSAAHYVKLSKQYGM"
     gene            complement(1389..1520)
                     /locus_tag="ACFOCN_000452"
     CDS             complement(1389..1520)
                     /locus_tag="ACFOCN_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor domain protein"
                     /protein_id="HFC6969659.1"
                     /translation="MPSKPEKRASDGIFACNSNADGQNQGASDTVIGHLVRVNLGLT"
     gene            complement(1539..3134)
                     /locus_tag="ACFOCN_000453"
     CDS             complement(1539..3134)
                     /locus_tag="ACFOCN_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HFC6969660.1"
                     /translation="MSQEILDQVRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQSAGT
                     VKGKKTGKFATSDWMEIEKQRGISVASSVMQFDYKDHTVNLLDTPGHQDFSEDTYRVL
                     TAVDSALMVIDAAKGVEAQTIKLLNVCRLRDTPIVTFMNKYDREVRDSLELLDEVENI
                     LQIRCAPVTWPIGMGKNFKGVYHILNDEIYLFEAGGERLPHEFDIIKGIDNPELEQRF
                     PLEIQQLRDEIELVQAASNEFNLDEFLAGELTPVFFGSAINNFGIQEILNSLIEWAPA
                     PKPRDATVRMVEPDEPKFSGFIFKIQANMDPKHRDRIAFLRVCSGKFERGMKMKHLRI
                     NREIAASSVVTFMSHDRELVEEAYAGDIIGIPNHGNIQIGDSFSEGEQLAFTGIPFFA
                     PELFRSVRIKNPLKIKQLQKGLQQLGEEGAVQVFKPMSGADLILGAVGVLQFEVVTSR
                     LANEYGVEAVFDSASIWSARWVSCDDKKKLAEFEKANAGNLAIDAGGNLAYLAPNRVN
                     LGLTQERWPDIVFHETREHSVKL"
     gene            complement(3241..3636)
                     /gene="hisI"
                     /locus_tag="ACFOCN_000454"
     CDS             complement(3241..3636)
                     /gene="hisI"
                     /locus_tag="ACFOCN_000454"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HFC6969661.1"
                     /translation="MDKNLLEAVKFDEKGLVCAIAQDAETKRILMVAWMNAEALQKTV
                     ETGFAHYYSRSRQKQWMKGEESGHTQKVRELRLDCDGDAIVMLIAQNGGIACHTGRES
                     CFYKVWRGSAWETADAVLKDEKEIYGSTH"
     gene            complement(3667..4434)
                     /gene="hisF"
                     /locus_tag="ACFOCN_000455"
     CDS             complement(3667..4434)
                     /gene="hisF"
                     /locus_tag="ACFOCN_000455"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HFC6969662.1"
                     /translation="MALAKRIIPCLDVKDGRVVKGVNFIGLRDAGDPVEAAKRYNGEG
                     ADELTFLDITASSDNRDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVS
                     INTAAVTCPDLINEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEW
                     AIEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVAEAVDIPVIASGGVGNVRHLIEGI
                     TEGKADAVLAAGVFHFGEIAIREAKRAMREAGIEVRL"
     gene            complement(4447..5184)
                     /gene="hisA"
                     /locus_tag="ACFOCN_000456"
     CDS             complement(4447..5184)
                     /gene="hisA"
                     /locus_tag="ACFOCN_000456"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HFC6969663.1"
                     /translation="MLLIPAIDLKEGRCVRLRQGLMEEATVFSDSPAETALHWFKQGA
                     RRLHLVDLNGAFAGVPQNLPAIKDILAAVAKDIPVQLGGGIRDLKTIGQYLDLGLNDV
                     IIGTAAVKNPDFVREACKAFPGRIIVGLDAKDGMAAIDGWATVTGHHVIDLAKRFEDD
                     GVNSIIYTDIGRDGMMSGVNIDATVKLAQAVRIPVIASGGLTGLDDIRALCAAEKHGV
                     AGAITGRAIYEGSIDFAQAQQLADSLD"
     gene            complement(5217..5855)
                     /gene="hisH"
                     /locus_tag="ACFOCN_000457"
     CDS             complement(5217..5855)
                     /gene="hisH"
                     /locus_tag="ACFOCN_000457"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFC6969664.1"
                     /translation="MQIAIIDYGMGNLHSVLKSVRTAGQLAGKNTEIFLSGDPERVSR
                     ADKVIFPGQGAMPDCMAALTRGGLDEAVKDALKNKPFFGICVGAQLLFDHSEEGNTDG
                     LGWFGGKVRRFERDLRDPQGCRLKVPHMGWNTVRQTQNHPLFKDIPQDTRFYFVHSYY
                     FAPENPETILGESDYPSPFACIVGKDNVFATQFHTEKSHDAGLTMLKNFLNW"
     gene            complement(5986..7488)
                     /gene="pta"
                     /locus_tag="ACFOCN_000458"
     CDS             complement(5986..7488)
                     /gene="pta"
                     /locus_tag="ACFOCN_000458"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HFC6969665.1"
                     /translation="MAKVLIVPVSAGLDASAAAQAFAKALDAQIFQAVDATAETLLAQ
                     GKSDDWFDALVGKVAALDAANLVIEGIAPDADKIYLAGKNVELALSLDAAAVFAVRSD
                     NADADELANRLNLAKQFFAAAPGVLEGFVVDGAAASVAEAAAEKTGLTFFGSSDALKD
                     VSVLAGREAKRLSPAQFRYNLIDFARQADKRIVLPEGAEPRTVQAAAICHEKGIARCV
                     LLAKREEVEAVAKERGISLPDSLEIIDPASLVEQYVEPMCELRKSKGLTPEDARKQLQ
                     DTVVLGTMMMAQNDVDGLVSGAVHTTANTIRPALQLIKTAPGASLVSSVFFMLLPNQV
                     LVFGDCAVNPNPTAQQLADIAIQSADSAKAFGIDPKVAMISYSTVNSGSGPDVDTVIE
                     ATKLAREKRPDLAIDGPLQYDAATVPGVGKSKAPGSPVAGQATVLVFPDLNTGNCTYK
                     AVQRSANVLSVGPLLQGLRKPVNDLSRGALVEDIVFTIALTAVQAKQMEG"
     gene            complement(7673..8731)
                     /gene="fbpC"
                     /locus_tag="ACFOCN_000459"
     CDS             complement(7673..8731)
                     /gene="fbpC"
                     /locus_tag="ACFOCN_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein FbpC"
                     /protein_id="HFC6969666.1"
                     /translation="MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIVGASGCGKT
                     TLLRCLAGFEQPDFGEISLSGRTIFSKNTNLPVRERRLGYVVQEGVLFPHLTVYRNTA
                     YGLGNGKGKTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELI
                     LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL
                     QTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCGLGRLPVQSGAPAGTRGTL
                     LIRPEQFSLHPHSAPTASIHAVVLKTTPKARHTEISLRVGQTVLTLNLPSAPTLSDGI
                     SAVLHLDGPALFFPGNTL"
     gene            complement(8752..10269)
                     /gene="fbpB"
                     /locus_tag="ACFOCN_000460"
     CDS             complement(8752..10269)
                     /gene="fbpB"
                     /locus_tag="ACFOCN_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease FbpB"
                     /protein_id="HFC6969667.1"
                     /translation="MSPKKIPIWLTGLILLIALPLTLPFLYVAMRSWQVGINRAVELL
                     FRPRMWDLLSNTLTMMAGVTLISIVLGIACALLFQRYRFFGKTFFQTAITLPLCIPAF
                     VSCFTWISLTFRVEGFWGTVMIMSLSSFPLAYLPVEAALKRISLSYEEVSLSLGKSRL
                     QTFFSAILPQLKPAIGSSVLLIALHMLVEFGAVSILNYPTFTTAIFQEYEMSYNNNTA
                     ALLSAVLMAVCGIVVFGESIFRGKAKIYHSGKGVARPYPVKTLKLPGQIGAIVFLSSL
                     LTLGIIIPFGVLIHWMMVGTSGTFALVSVFDAFIRSLSVSALGAILTILCALPLVWAS
                     VRYRNFLTVWIDRLPFLLHAVPGLVIALSLVYFSINYTPAVYQTFIVVILAYFMLYLP
                     MAQTTLRTSLEQLPKGMEQVGATLGRGHFFIFRTLVLPSILPGITAAFALVFLKLMKE
                     LTATLLLTTDDVHTLSTAVWEYTSDAQYAAATPYALMLVLFSGIPVFLLKKYAFK"
     gene            complement(10337..11332)
                     /gene="fbpA"
                     /locus_tag="ACFOCN_000461"
     CDS             complement(10337..11332)
                     /gene="fbpA"
                     /locus_tag="ACFOCN_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     FbpA"
                     /protein_id="HFC6969668.1"
                     /translation="MKTSIRYALLAAALTAATPALADITVYNGQHKEAAQAVADAFTR
                     ATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTIN
                     ETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYAPT
                     SGAFLEQVVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYY
                     WHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLASKEG
                     QRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK"
     gene            complement(11583..12053)
                     /locus_tag="ACFOCN_000462"
     CDS             complement(11583..12053)
                     /locus_tag="ACFOCN_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4375 domain-containing protein"
                     /protein_id="HFC6969669.1"
                     /translation="MTDTDTQADRFEQMMWQAVDKLFEQHDGKLESMDGREQELVLIW
                     RTEADIGNGSILQFVCNWSFPAAEKTCSVLKKIGAVHSAMLIHRAADALGKEIRHLQS
                     EGKNLKEMWDITQHLDNKTASLPNSLDEQYWQDPDKLYLPGWQYYSGNPVQTLF"
     gene            complement(12111..13487)
                     /gene="argH"
                     /locus_tag="ACFOCN_000463"
     CDS             complement(12111..13487)
                     /gene="argH"
                     /locus_tag="ACFOCN_000463"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HFC6969670.1"
                     /translation="MHDKTWSGRFNEPVSELVKQYTASIGFDRRLAEWDIQGSLAHAQ
                     MLKETGVLDEGDLADIRRGMAEILEEIRSGKIEWSSDLEDVHMNIERRLTDKIGDAGK
                     RLHTGRSRNDQVATDIRLWLRDQITVIQSLIQSLQTALLDLAEQNAETVMPGFTHLQV
                     AQPVSFGHHMLAYVEMLGRDNERMADCRCRVNRMPLGAAALAGTTYPIQREITAELLG
                     FEQICQNSLDAVSDRDFAIEFTAAASLVMVHLSRLSEELILWMSPRFGFIDIADRFCT
                     GSSIMPQKKNPDVPELVRGKSGRVIGHLIGLITLMKSQPLAYNKDNQEDKEPLFDTAD
                     TLIDTLRIYADMMRGVTVKPDNMRAAVMQGFATATDLADYLVKKGMPFRDAHEVVAQA
                     VRHADQAGVDLSELPLEVLQGFSDLIADDVYGVLTPEGSLNARNHLGGTAPEQVRFQV
                     KRWREMLA"
     gene            complement(13506..14375)
                     /gene="galU"
                     /locus_tag="ACFOCN_000464"
     CDS             complement(13506..14375)
                     /gene="galU"
                     /locus_tag="ACFOCN_000464"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFC6969671.1"
                     /translation="MKPIRKAVFPVAGMGTRFLPATKASPKEMLPIVDKPLIQYAVEE
                     AVEAGCTEMVFVTGRNKRSIEDHFDKAYELETELEMRHKDKLLEHVRNILPPNITCLY
                     IRQAEALGLGHAVLCARAAIGDEPFAVILADDLIDAPKGALKQMIEVYERSGNSILGV
                     ETVEPSQTGSYGIVETEQLKQFQRIIGIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     NLPRGAGNEIQLTDGIAKLLDHEFVLAHPFEGTRYDCGSKLGYLEATVAYGLKHPETG
                     EPFRRLLEKYRTE"
     gene            complement(14403..15002)
                     /gene="rdgB"
                     /locus_tag="ACFOCN_000465"
     CDS             complement(14403..15002)
                     /gene="rdgB"
                     /locus_tag="ACFOCN_000465"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HFC6969672.1"
                     /translation="MSEKPEKIVLASGNAGKLEEFGNLFKPYSITVLPQSAFGIPECP
                     EPYPTFVENALAKARHAAEYSGLPALADDSGICAAALNGAPGIHSARYAGDNPKSDTA
                     NNLKLAAELVGKADKSCCYVCVLVFVLHKDDPRPIIAEGVWHGQWNGVPAGENGFGYD
                     PYFYLPGHGKTAAELDSEVKNRESHRAQALAELLRKLAL"
     gene            complement(14995..15228)
                     /locus_tag="ACFOCN_000466"
     CDS             complement(14995..15228)
                     /locus_tag="ACFOCN_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO_0222 family membrane protein"
                     /protein_id="HFC6969673.1"
                     /translation="MNRRKIYLLSVALFTLAFMLLVLLGAYLLTVGSKAFAVASFFFA
                     FGALFGQIGSLALYLRHKSLRAAQSAAKENRYV"
     gene            complement(15336..15869)
                     /locus_tag="ACFOCN_000467"
     CDS             complement(15336..15869)
                     /locus_tag="ACFOCN_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HFC6969674.1"
                     /translation="MADFNQILTPGDVDGGIINVVNEIPAGSNHKIEWNRKLAAFQLD
                     RVEPAIFAKPTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGE
                     VDDKIVCVPADDRNNGNAYKTLADLPQQLIKQIEFHFNHYKDLKKAGTTKVESWGDAE
                     EAKKVIKESIERWNKQA"
     gene            complement(15971..16429)
                     /gene="nudB"
                     /locus_tag="ACFOCN_000468"
     CDS             complement(15971..16429)
                     /gene="nudB"
                     /locus_tag="ACFOCN_000468"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008828 - dATP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0019177 - dihydroneopterin triphosphate
                     pyrophosphohydrolase activity [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HFC6969675.1"
                     /translation="MPMAKPLKYPVSALVVLYSGDGGILLIERTHPEGFWQSVTGSLE
                     PGETVAQTARREVWEETGILLADGQLQDWHDSTVYEIYHHWRHRYPKGVFENREHLFS
                     AEIPRDTPIALQPEEHVSYGWFGLEEAAEKVFSPSNRRAILELGRFLGKR"
     gene            16640..16716
                     /locus_tag="ACFOCN_000469"
     tRNA            16640..16716
                     /locus_tag="ACFOCN_000469"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16674..16676,aa:Pro,seq:ggg)
     gene            16874..18700
                     /gene="mafB"
                     /locus_tag="ACFOCN_000470"
     CDS             16874..18700
                     /gene="mafB"
                     /locus_tag="ACFOCN_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 2"
                     /protein_id="HFC6969676.1"
                     /translation="MGISRKISLILSILAVCLPMHAHASDLANDSFIRQVLDRQHFEP
                     DGKYHLFGSRGELAERSGHIGLGKIQSHQLGNLMIQQAAIKGNIGYIVRFSDHGHEVH
                     SPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIY
                     SYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSG
                     NAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAVMHGLGLLSTENKMARIN
                     DLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFTAVIPVKGIGAVRGKYGLGGI
                     TAHPVKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRNIRSNLEQRYGKENITS
                     STVPPSNGKNVKLADQRHPKTGVPFDGKGFPNFEKHVKYDTKLDIQELSGGGIPKAKP
                     VSDAKPRWEVDRKLNKLTTREQVEKNVQEIRNGNKNSNFSQHAQLEREINKLKSADEI
                     NFADGMGKFTDSMNDKAFSRLVKSVKENGFTNPVVEYVEINGKAYIVRGNNRVFAAEY
                     LGRIHELKFKKVDFPVPNTSWKNPTDVLNESGNVKRPRYRSK"
BASE COUNT         4047 a         4513 c         5609 g         4620 t
ORIGIN      
        1 cggacaccaa atatcaaata tatatatcag gataaccaag gattgtcaga ggcgagaaat
       61 accggaataa aaaattcaaa cggaaaatat atagtcttta ttgattcgga tgattttatt
      121 aattgtcagg tcttgctgga ttttcttagt aaagatgata ttgatatgcc ggatgtggtt
      181 tttttaaatg cagttaaata tgataaggga agtgtttcat attttggcga agattatcag
      241 cctgaaaaaa tactcaatca atccaaagtc gaagttttga aaggattatg ccgatttaga
      301 aaatttccgg gttcggcgtg gaataagatt ataaaaagag aattgattat taaagaaaaa
      361 ctgttttttg aaaagggaat ttattctgaa gatgtcgaat ggtcaatgag attatttaat
      421 gcggcaacaa ctttttctta tttggacggt tgttattact attatcggca gggaagagaa
      481 gattctatta cgggaactgt ttcggaaaaa agtataaagt cattattata tattttggag
      541 aaaaatgcgg aaatggaatt taatagggat atatcaagtt atctttattc ttttctttcc
      601 tacgaatatc tcgttttgct ttttatcatg acgagtaaaa atatagcgtg tgatgctgat
      661 ataaaaagaa gggcgtatca tttaaggttt atgctgttaa agtccaataa attgatatat
      721 aagctgatat tcccgataat cacattattc ggggttgata ttacaggcag gattttaaaa
      781 gcaatcaggg ggaatattta ataaatcctt taacactata catcttaccg aaggaggaaa
      841 aatgaacgca atccgaactt tccaaaaccg cacgcccgaa atccacgaaa gctgtatgat
      901 agacgaagcg tgcgtcgtca tcggcgaagt gtcgcttgcc gaagacgttt ccgtgtggcc
      961 gtgcgccgtg ttgcgcggcg atgtgaacag catcaccgtc ggcgcgcgca gcaatataca
     1021 ggacggcagc gtcctgcacg tttcccacaa aaccgccgcc aaacccgaag ggtcgccgct
     1081 ggttatcggc gaagacgtta ccgtggggca caaagtgatg ctgcacggct gccgtatcgg
     1141 caaccgcgtc ctggtcggca tggggacgac ggttctggac gatgccgtga ttgaggacga
     1201 agtgatgatc ggcgcgggca gcctcgttcc gccgcgcaaa cgtttggcgg gcggctacct
     1261 ttatgtcggt tcgccggtca gacaagtgcg cgtgctgacc gatgaggaaa aagccttttt
     1321 gaaatattcc gccgcgcatt atgtgaagct gtcgaaacag tacgggatgt gaaatcacat
     1381 cggcgttcct acgtcagccc caaattcacg cggacgagat gcccgataac ggtatccgat
     1441 gcgccttgat tttgaccgtc tgcgtttgag ttgcaggcaa aaatgccgtc tgaagccctt
     1501 ttttcgggtt tagacggcat tttattgccg attgtttttt aaagtttgac cgaatgttcg
     1561 cgcgtttcgt ggaacacgat gtccggccaa cgttcttgcg tcaaccccaa attcacgcgg
     1621 ttgggggcga ggtaggcgag gttgccgccc gcgtcgatgg cgaggttgcc cgcgttggct
     1681 ttttcaaact ccgccagttt tttcttgtcg tcgcacgata cccagcgcgc cgaccagatg
     1741 gatgcgctgt cgaacacggc ttctacgccg tattcgttgg cgaggcgcga ggttacgact
     1801 tcaaactgca acacgccgac cgcacccaaa atcaaatccg cgccgctcat cggtttgaac
     1861 acctgtaccg cgccttcttc gccaagctgt tgcaaacctt tttgcagttg cttgattttc
     1921 agcgggtttt tgatgcggac gctgcggaac agttcgggcg cgaagaaggg aatgcctgta
     1981 aatgccagtt gttcgccttc ggagaagctg tcgccgattt ggatgttgcc gtggttcggg
     2041 atgccgataa tgtcgccggc gtaggcttct tcaaccagct cgcggtcgtg ggacatgaag
     2101 gttaccacgc tggaggcggc gatttcgcgg ttgatacgca ggtgtttcat tttcatgccg
     2161 cgctcgaatt tgccggagca gacgcgcaag aaggcaatac ggtcgcggtg tttcgggtcc
     2221 atattggctt ggattttgaa gataaatccg gaaaacttcg gctcgtccgg ctcgaccata
     2281 cgcacggtcg catcgcgtgg tttcggcgcg ggcgcccatt caatcaatga attgaggatt
     2341 tcctgaatac cgaagttgtt aatcgcagag ccgaagaata cgggcgtgag ttcgccggcg
     2401 aggaattcgt cgagattgaa ctcgttggaa gccgcctgca ccaattcgat ttcgtcgcgc
     2461 aactgttgga tttccaatgg aaagcgttgt tccaattcgg gattgtctat gcctttgatg
     2521 atgtcgaact cgtgcggcag gcgttcgccg cccgcttcaa agagatagat ttcgtcgttc
     2581 aggatgtggt atacgccttt gaagtttttg cccataccga tcggccaagt aacgggcgcg
     2641 cagcggattt gcaggatgtt ttccacttcg tccaagagtt ccagcgaatc gcgcacttcg
     2701 cggtcgtatt tgttcataaa cgtaacaatc ggcgtatcgc gcaggcggca gacgtttaag
     2761 agcttgatgg tttgcgcttc cacacctttt gccgcgtcaa tcaccattaa tgcgctgtcc
     2821 acggcggtta aaacgcggta ggtgtcttcg gagaagtctt ggtgtcccgg cgtgtccaag
     2881 aggttgacgg tgtggtcttt atagtcgaac tgcatcacgc ttgatgccac ggaaatgccg
     2941 cgctgcttct cgatttccat ccagtcggaa gtggcgaatt tgccggtttt tttgcctttt
     3001 accgtacccg cgctttgaat cgcgcctgaa aacagcaaga gtttttcggt tagcgtggtt
     3061 ttacccgcgt cagggtggga gatgatggca aacgtgcggc ggcggcgcac ttggtcgagg
     3121 atttcttggg acatggtttt ctttgcaaaa aggttcaggc cgcttttcag acggcccgga
     3181 cagtgtttga gacggcgaaa ttgtacaaaa aaatgcctga taattcaatg ttggaggcgg
     3241 tcagtgcgtg ctgccgtaaa tctctttttc gtctttcagg acggcatcgg cggtttccca
     3301 cgcgctgcca cgccagactt tgtaaaagca gctttctcgc ccggtgtggc aggcgatgcc
     3361 gccgttttgg gcgatgagca tcacaatggc gtcgccgtcg cagtcgaggc gcagttcgcg
     3421 gactttttgc gtgtgtcccg actcttcgcc cttcatccat tgtttttggc gcgaacggct
     3481 gtaatagtgg gcaaagccgg tttcgacggt tttttgcagg gcttcggcgt tcatccacgc
     3541 caccattaaa atacgtttgg tttcggcatc ttgggcgatg gcgcaaacca aacctttttc
     3601 gtcaaatttg acggcttcaa gcaggttttt atccatattt cctttcagac ggcatggtcg
     3661 gggcggtcag aggcgcactt cgatgccggc ttcgcgcata gcgcgtttgg cttcgcggat
     3721 ggcgatttcc ccgaaatgga aaacgccggc ggcaagtacg gcatcggctt tgccttcggt
     3781 tatgccttca atcaggtgcc ggacattgcc gaccccgccg gaggcgatga cggggatgtc
     3841 gacggcttcg gcaacggcgc gggtcagcgg caggttgaaa ccctgtttcg taccgtccct
     3901 gtccataccg gtaagcagga tttcgcccgc gccgcgtttt tgcatttcga tcgcccattc
     3961 caccgcatcc aaaccggtcg gattgcgccc gccgtgggta aagatttccc agcgtgtgtt
     4021 ttcggggttg acggctttgg catcgacggc ggcgacgatg gcttgcgaac cgaaaaatcc
     4081 ggcggcttcg ttaattaaat cgggacaggt aacggcggcg gtgttgatgc tgactttgtc
     4141 cgcgccggca ttgagcaggc ggcggatgtc ggcaacggtg cgtacgccgc cgccgacggt
     4201 cagcgggatg aagacttgtc cggcaacctc ttcgatgatg tgcaggatgg tgtcgcggtt
     4261 gtcggatgag gcggtgatgt cgaggaaggt caattcgtcc gcgccttcgc cgttgtagcg
     4321 tttggcggct tcgacggggt cgcccgcgtc gcgcaaaccg atgaagttca cgcctttgac
     4381 gacgcgtccg tcttttacgt cgagacaggg gatgatgcgt tttgccagtg ccataatcgg
     4441 atgcctttag tcgagggaat ctgccagttg ctgcgcttgg gcaaaatcga tgctgccctc
     4501 gtaaatcgcg cggccggtaa tcgcgcctgc tacgccatgt ttttcggcgg cacacagggc
     4561 gcggatgtcg tccaagccgg tcagtccgcc ggaggcgatg acgggaatgc ggacggcttg
     4621 ggcgagtttg accgtcgcgt cgatgttcac gccgctcatc ataccgtcgc gcccgatgtc
     4681 ggtgtagatg atgctgttga cgccgtcgtc ttcaaagcgt tttgccaaat caattacatg
     4741 atgcccggtt acggttgccc agccgtcgat ggcggccata ccgtctttgg catccagccc
     4801 gacaataatc ctgccgggga aggctttgca cgcctcgcgc acgaagtcgg ggtttttgac
     4861 cgccgccgtg ccgataatca cgtcgttcag acccaaatcc aaatattgtc cgatggtttt
     4921 caaatcgcgt atgccgccgc cgagctgtac ggggatgtct ttggcgacgg cggcaaggat
     4981 gtctttgatg gcgggcaggt tttgcggaac gccggcaaac gcgccgttca aatctaccag
     5041 atgcaggcgg cgcgcgcctt gtttgaacca gtgcagtgcg gtttcggcgg gcgaatcgga
     5101 aaagacggtc gcctcttcca tcagcccttg tctcaggcgg acgcagcgtc cttctttcaa
     5161 atcgatggcg ggtatcagca gcataatttt tctccttgtg cggggccgtg tccggcttac
     5221 cagtttaaaa agtttttcaa catcgtcagc ccggcatcgt ggcttttttc ggtgtgaaat
     5281 tgcgtggcga atacgttgtc tttgccgacg atgcaggcaa acggggacgg gtagtcgctt
     5341 tcgcccaata tggtttcggg attttcgggg gcgaaatagt agctgtggac gaagtaaaaa
     5401 cgcgtgtctt ggggaatatc tttaaacagc gggtggtttt gggtttggcg cacggtgttc
     5461 cagcccatat gcgggacttt cagacggcat ccctgcgggt cgcggaggtc gcgctcaaag
     5521 cgtctgactt tgccgccgaa ccagcccaag ccgtcggtgt ttccttcttc actgtggtcg
     5581 aataaaagtt gcgcgccgac gcagattccg aaaaagggtt tgttttttaa ggcatctttg
     5641 actgcctcgt ccaggccgcc gcgcgtcagt gccgccatac agtcgggcat cgcgccctgc
     5701 ccgggaaaaa tgactttgtc ggcgcgggac acgcgttcgg ggtcgccgct taaaaagatt
     5761 tcggtatttt ttccggcaag ctgccccgcc gtccggacgg atttcaatac ggaatgcagg
     5821 ttgcccatac cgtaatcgat aatggcgatt tgcatggctt cctcctcttt ttttgcaata
     5881 tggctgcgat tttaacaaac aaatgtgccg tgctgataaa aatgccgtct gaaaacggga
     5941 gtctgtcttc agacggcata gggtttaaac ccggaaagcc gtttgtcagc cttccatttg
     6001 ttttgcctga acggcagtca gggcgatggt gaacacgatg tcttccacca gcgcgccgcg
     6061 ggagaggtcg ttgaccggtt tgcgcaggcc ttgcagcagc gggccgacgc ttaagacgtt
     6121 ggcactgcgt tggacggctt tataggtgca gttgccggtg ttcaggtcgg ggaagaccaa
     6181 aacggttgcc tgtcctgcca ccgggctgcc cggagctttg gatttgccca cacccggcac
     6241 ggttgccgca tcatattgca gcgggccgtc gatggcgagg tcggggcgtt tttcccgggc
     6301 aagtttggtt gcttcgatga cggtatcgac atcggggccg ctgccggagt tgacggtgga
     6361 gtaggaaatc atcgccactt tcgggtcgat gccgaaggct tttgcggaat cggcagactg
     6421 gatggcgatg tcggcaagct gttgcgcggt cgggttcgga ttaaccgcgc agtcgccgaa
     6481 gacgaggact tggttgggca gcagcataaa gaatacgctg gacacgaggc ttgcgcccgg
     6541 tgcggtttta atcagttgca aagcggggcg gatggtgttg gcggtggtgt gaaccgcacc
     6601 ggataccaaa ccgtccacat cattttgcgc catcatcatc gtaccgagta ccacggtgtc
     6661 ttgcagttgc ttgcgcgcgt cttcgggtgt caggcctttg gatttgcgca gttcgcacat
     6721 cggctcgacg tattgttcga ccaatgaggc gggatcgatg atttccaaag agtcgggcag
     6781 gctgatgccg cgttctttgg caacggcttc gacttcttcg cgtttggcaa gcaggacgca
     6841 gcgggcaatg cctttttcgt ggcagatggc ggcggcttgg acggtgcggg gttctgcgcc
     6901 ctcaggcagg acgatgcgtt tgtcggcttg gcgggcgaag tcgatcaggt tgtagcggaa
     6961 ttgcgccggc gacaggcgtt ttgcttcgcg gcctgccaat acggatacgt ctttcagcgc
     7021 gtcgctcgaa ccgaagaagg tcaggccggt tttttcggct gccgcttcgg caacggaggc
     7081 tgccgcgccg tccacgacaa aaccttccaa tacgcccggc gcggcggcga agaactgttt
     7141 ggcaaggttc agccgatttg ccagttcgtc ggcatcggcg ttgtcggaac ggacggcgaa
     7201 gacggctgcc gcgtcaaggg acaatgccag ttcgacgttt ttgcctgcga ggtagatttt
     7261 gtcggcatcg ggcgcgatgc cttcgatgac gaggttggcg gcatcgagtg cggcaacttt
     7321 gccgaccagt gcgtcgaacc agtcgtcgct tttgccttgc gcgagcaggg tttcggcggt
     7381 tgcgtcaacg gcttggaaaa tttgtgcgtc cagtgctttt gcaaaggctt gtgcggcggc
     7441 ggaggcgtcc agtccggcag atacgggtac gatgagtact tttgccatga tatatccttt
     7501 cgtatgctgc ggtgtgcggc atatgtggtt ggaaggggcg gcatataggc agaaacggct
     7561 gcctgcgtgc cgtgcgtgcc gtgtttggct tgaggcgcgc aggttgaata tagcaaacaa
     7621 attctgtttc caacaagata aatatccgca ggcttgtgga tgctgccgcc tttcagaggg
     7681 tatttccggg gaagaacagg gcgggaccgt ccaaatggag gacggcggaa atgccgtctg
     7741 acagggtggg ggcggaaggg aggttgagcg tgaggacggt ttgtccgacc cggagactga
     7801 tttcggtatg ccgcgctttg ggcgtggttt tgagaaccac ggcgtgaatg gaggcggtgg
     7861 gtgcggaatg ggggtgaagg ctgaactgtt ccggacggat gagcagtgtg ccgcgtgtgc
     7921 ctgcgggtgc gccgctttga acgggcaggc ggcccaatcc gcaatcggcg gtgccgtcgg
     7981 cgttgagcgc ggcggggaac acgatgcctt cgccgataaa cagggcggca tcaaggtcgg
     8041 caggttgtcg gtacaattcg tgagggcttg cagtttggag gatgcgcccc tgtttcatca
     8101 cggcaatccg gtcggcgtat tgcagggctt cttcgcggtc gtggctgacg aaaacggcag
     8161 atttgccgtt ggcgcgcagg gcggcaatca tgtcttcgcg aatctggcgg cgcaactgtt
     8221 cgtccagcgc gctgaagggt tcgtccaaca aaatcagttc gggatcgggt gcgagggcgc
     8281 gggcgagggc gacgcgctgt tgctgtccgc ccgaaagttc gtgcggatag cgtccggcaa
     8341 gttcggaaat gccggtcaat tccaacatag cttcgatgcg ctgccgctct tgcgccgtct
     8401 tgcctttgcc gttgcccagc ccgtaggcgg tgttgcggta aacggtcagg tgggggaaca
     8461 gtacgccttc ctgtacgaca taacccaaac ggcgttcgcg gacggggagg ttggtatttt
     8521 tcgagaagat ggttctgccg gaaagcgaaa tttcgccaaa atcgggttgt tcaaaaccgg
     8581 caaggcagcg taaaagggtg gttttgccgc agccggacgc gccgacgata aagaggattt
     8641 cgcccgggtc gaggctgagc gaaatgtcgt ttaaaaccgg ggtgttttga aaacttttgg
     8701 acaggtgtcc gatgtgcagg gcggcggtca tggcggtact tcctcaagct gttatttgaa
     8761 ggcgtatttc ttcagcagga atacggggat gccggaaaat aataccagca tcagcgcgta
     8821 aggggtggcg gcggcgtatt gtgcgtccga tgtgtattcc caaacggcgg tggagagtgt
     8881 gtggacatcg tcggtggtca gcagcagggt ggcggtcagc tctttcatca gtttgaggaa
     8941 gacgagtgcg aatgcggcgg taatgccggg caggatggac ggcagtacca acgtcctgaa
     9001 aataaagaag tgtccgcgcc ccaatgttgc gccgacctgt tccatccctt tggggagttg
     9061 ttccaaggaa gtcctcaggg tggtttgcgc catcggcagg taaagcatga aataggcaag
     9121 gatgacgacg ataaaggttt ggtaaacggc aggggtgtag ttgatgctga aataaaccaa
     9181 ggatagggcg ataaccaaac cggggacggc gtgcagtaaa aacggcagcc tgtctatcca
     9241 aacggttaaa aaattgcgat agcgaaccga tgcccaaaca aggggcaagg cacataatat
     9301 agtcaaaatc gcacctaaag ccgatacgct taaggaacgg ataaaggcat caaatacgga
     9361 tacgagcgcg aatgtgccgg aagtgccgac catcatccaa tgtatcaata cgccaaaggg
     9421 gataataatg cccaaagtca acaagctgct taaaaaaaca atcgcgccaa tctgaccggg
     9481 cagtttgagg gttttgacgg gataaggacg ggcaacgcct ttgccgctgt ggtaaatctt
     9541 ggctttgccg cgaaatatgc tttctccaaa tacgacgatg ccgcacaccg ccattaaaac
     9601 agcggaaagc agggcggcgg tattgttgtt gtaggacatt tcgtattctt ggaaaatggc
     9661 ggtggtaaaa gtggggtagt tcaaaataga taccgcgcca aattcgacca gcatatgcag
     9721 ggcaatcagt aacacgctgc tgccgatggc gggtttgagc tgggggagga tggcggaaaa
     9781 aaaggtttgc aggcggcttt tgcccaagga caggctgact tcttcgtaag acaggctgat
     9841 gcgtttgagt gccgcctcga cgggcaggta ggcgagcggg aacgaggaca ggctcataat
     9901 catcactgtc ccccaaaagc cttcgacacg gaaggtcagg ctgatccagg tgaaacagct
     9961 gacaaatgcg gggatgcaca aaggcagggt gattgccgtc tgaaaaaagg ttttgccgaa
    10021 gaagcggtaa cgttggaaca aaagggcgca ggcaatgccc aaaacaatgg aaatcagggt
    10081 aacgcccgcc atcatcgtca aggtgttgga gagcaaatcc cacatacgcg ggcggaacaa
    10141 cagttcgacg gcgcggttga tgccgacctg ccacgaacgc atagcgacat ataaaaaagg
    10201 cagggtaagc ggtagggcaa tcagtaggat gaggccggta agccaaatgg gtattttttt
    10261 aggagacata gtgtttttta tcggcaaaac gggcggacag tataaatgtc cacccgtttg
    10321 acaatccgaa aacggcttat ttcataccgg cttgctcaag cagccgggtg gcgtgttctt
    10381 tttcggaaac agtggtggcg gacacttggg gtgcttccaa cttggcgatg ggttccaaat
    10441 tgaaagtgga taccacgtgc ggattcaaag gatattcggc acggacggcg gtcagggcgc
    10501 gctgtccttc cttgctggcg aggaaggcga cgaatttttt cgcctcatcc ttgttttggg
    10561 aggattttaa cacggctgcg ccggaatagg taacgagtgc gccgggatct ctgtggcgga
    10621 cgaaattcag gcgggtgtgg acattttgta cgcctttttc acgcgcaaaa gcgtgccagt
    10681 agtagttgtt gatgagggcg gcatcgattt cgccgttttc aaccgcttga agggcgacgg
    10741 agtttttagc gtaaggcttg ccgtattctt tcagaccttt gagccatttc aatgcggccg
    10801 cttcgccttt cagtttgacg atggcgacaa cctgttccaa gaacgcgccg gaagtggggg
    10861 cgtaaccgat gcggtttttc catttcggcg tggcgtaatt caggacggat ttttccaaat
    10921 ctttttcaga cagtttgcgg gtgtcgtaaa cgacgacgcg cgaacgtccg ctcagtgcca
    10981 cccagtcttt tttggcggca accggcacgc ccttgccgcg tgtttcgttg atggtggagg
    11041 cgggcagggg ctctaggagg ttggctgcgg aaagggtggc gagtgccggg atttgttcgg
    11101 aatagaatac gtcggcgggg cttcggctgc cttcttcttt gatttgaccg gcaagctggt
    11161 cgcctttggc gctgttgagt ttgactttga tgccggtagc ccgggtaaag gcatctgcaa
    11221 cggcttgtgc cgcttctttg tgttggccgt tgtacacggt aatgtctgcc agcgcggggg
    11281 ttgcggcggt cagggctgcg gcaagcagtg cgtatcggat agatgttttc atatcgattt
    11341 tctcctaatg aatgagagtg tacaccttgt taagacataa cggcgtgtag tgtattcctt
    11401 cttctttata aatgcaaata attatttttt aaatttgtta ttatccgatc cggttatggt
    11461 ttgttctgac ttgtattttt tccgtgcatc gcgcccgtaa ggcggaagcg gcgggcaatg
    11521 cgtggcggaa tgtgggtaaa ggcggcattt tgatttgtcg gaatgcttga gaacccctct
    11581 ctttaaaaca gcgtctgaac agggttgccg gaatagtatt gccatcccgg cagatacagt
    11641 ttgtcggggt cttgccaata ttgttcatcc agactgttcg gcagtgaggc ggttttgttg
    11701 tcgagatgtt gcgttatatc ccacatttct ttcaggtttt taccttccga ttggaggtgg
    11761 cggatttctt ttcccaatgc gtctgccgcc cgatggatca gcattgcgct gtgtaccgcg
    11821 ccgatttttt tcagaacgga acaagtcttt tcggcggcgg ggaaactcca gttgcagaca
    11881 aattgcagta tgctgccgtt accgatatcg gcttctgtcc gccaaatcaa aaccagctcc
    11941 tgttcccgcc cgtccatgct ttcgagtttg ccgtcatgct gttcaaaaag tttgtccacc
    12001 gcctgccaca tcatctgttc gaagcggtcg gcttgggtat ccgtatcggt catcgtgttc
    12061 ttgcctttta aaaatgccgt ctgaacattt cttcagacgg catttggggg ttaagccaac
    12121 atttcccgcc agcgtttcac ttggaagcgg acttgttccg gcgcggtacc gcccaagtgg
    12181 ttgcgggcgt ttaagctgcc ttcgggtgtc agcacgccgt aaacgtcgtc ggcaatcaaa
    12241 tcgctgaaac cttgtaagac ttcgagcggc agttcgctca aatcgacgcc cgcttggtcg
    12301 gcgtggcgca cggcttgggc gacgacttcg tgggcatcgc ggaaaggcat gccttttttg
    12361 accagataat ccgccaagtc ggtggcggta gcgaagccct gcatcacggc ggcgcgcata
    12421 ttgtcgggtt tgacggttac gccgcgcatc atatcggcgt aaatccgcaa cgtgtcgata
    12481 agcgtgtcgg cggtgtcgaa caagggttct ttgtcttcct gattgtcttt gttgtacgcc
    12541 aagggttggg atttcatcag ggtaatcaga ccgataaggt gtccgatgac gcggccggat
    12601 ttgccgcgca cgagttcggg cacgtcgggg tttttcttct gcggcatgat ggacgaacct
    12661 gtgcagaaac ggtcggcgat gtcgataaag ccgaaacgcg ggctcatcca caaaatcaat
    12721 tcttcagaca ggcggctcag gtgaaccata accagcgagg cggcggctgt gaactcaatg
    12781 gcgaaatcgc ggtcggatac ggcatcgagc gagttctggc agatttgttc aaagcccaat
    12841 agctcggcgg tgatttcgcg ctgaatcggg taggtcgtcc cggcaagggc ggctgcgccg
    12901 agcggcatac ggttgacgcg gcagcggcag tccgccatcc gttcgttatc gcgtccgagc
    12961 atttcgacgt aggcgagcat atggtgtccg aagctgacgg gctgggcgac ttgcaggtgg
    13021 gtaaagcctg gcatgacggt ttcggcgttt tgttccgcca aatccagcaa tgccgtctga
    13081 aggctttgaa tcaggctttg tataacggta atctggtcgc gcagccacag gcggatgtcg
    13141 gtggcgactt ggtcgttgcg gctgcggccg gtgtgcaggc gtttgcccgc gtcgccgatt
    13201 ttgtcggtca ggcggcgttc gatgttcata tggacatctt ccaaatcgga cgaccattcg
    13261 attttgccgc tgcggatttc ttcgaggatt tccgccatac cccggcggat gtccgccaaa
    13321 tcgccttcgt ccaacacgcc ggtttctttc agcatttgcg cgtgtgccag cgagccttgg
    13381 atgtcccatt cggcaagccg tcggtcgaaa ccgatggagg cggtgtattg tttgacgagt
    13441 tcggaaacgg gttcgttgaa acgtccggac caggttttgt cgtgcataag gattccttga
    13501 tggggttatt cggtgcggta tttttccaaa agccggcgga agggttcgcc ggtttcggga
    13561 tgtttcagac cgtaggcgac ggtggcttcg aggtagccca gtttgctgcc gcagtcgtag
    13621 cgcgtacctt caaaggggtg cgccaggaca aattcgtgat cgagcagctt ggcgatgccg
    13681 tctgtaagct ggatttcgtt gcccgcgccg cgcggaagat tggttaagag gtcgaaaatg
    13741 cgcggggtga ggatgtagcg tccaacaacg gcaaggttgg agggcgcgtc ttcgggcttg
    13801 ggtttttcga caatgccgat aatgcgttgg aactgtttga gctgttcggt ttcgacgatg
    13861 ccgtatgagc cggtttgcga cggttcgacg gtttctacgc ccaaaatgct gttgccgctg
    13921 cgttcgtaca cttcaatcat ttgtttgagc gcgccttttg gggcatcgat taaatcgtca
    13981 gccaaaatca cggcaaaggg ttcgtcgccg atggcggcgc gggcgcacaa gacggcgtgt
    14041 cccaagccca gtgcttccgc ctgacggatg tagaggcagg taatgttcgg cggcaggatg
    14101 ttgcggacgt gttccaacaa tttgtcttta tggcgcattt ccaactcggt ttcgagttcg
    14161 tatgccttgt cgaaatggtc ttcgatgctg cgtttgttgc gtccggtaac aaacaccatt
    14221 tccgtgcagc cggcttccac ggcttcttct acggcgtatt ggatcagcgg cttgtcgacg
    14281 atgggcagca tttctttcgg gcttgccttg gtggcgggca ggaagcgtgt tcccatccct
    14341 gcgacgggga aaacggcttt ccgtatgggt ttcattcttt ttcctttgta ttgttttgat
    14401 gtttaaaggg cgagtttgcg taagagttcg gcaagtgcct gcgcgcggtg gctttcgcgg
    14461 tttttgacct ccgaatccaa ttcggcggcg gttttgccgt gtccgggcag ataaaaatac
    14521 gggtcgtaac cgaaaccgtt ttcaccggcg ggaacgccgt tccattgtcc gtgccatacg
    14581 ccttcggcaa taatcggacg cgggtcgtct ttatggagga caaaaaccaa tacgcagacg
    14641 tagcaacagc ttttgtcggc tttgccgaca agttcggcgg caagtttcag gttgttggcg
    14701 gtatcggatt tgggattgtc gcccgcgtaa cgtgcggaat ggatgcccgg cgcgccgttt
    14761 agggcggcgg cacagatgcc gctgtcgtcg gcaagcgcgg gcagcccgct gtattcggcg
    14821 gcatggcgtg cttttgccag cgcgttttcg acaaaggtgg gatagggttc ggggcattcg
    14881 ggtatgccga atgcggattg cggcaatacg gtgatgctgt aaggtttgaa taagttgccg
    14941 aattcttcga gcttgccggc attgccgctt gccaaaacga ttttttccgg tttttcagac
    15001 atagcggttt tcctttgcgg cggattgggc ggcgcgtagg gatttgtgcc gcaggtagag
    15061 ggcgaggctg ccgatttgtc cgaacagtgc gccgaatgcg aaaaaaaagg aggcgacggc
    15121 gaaggctttg ctgccgacgg tcagcagata agcacccaag aggacgagca gcataaatgc
    15181 cagtgtgaag agggcaacag acaacagata gatttttcgg cggttcatgg cgttcggtcg
    15241 gaaacggtat gttcggatta tagccgattg ggacggtatt ccctagagct tggaaaaatg
    15301 ccgtctgaag cggcgttcag acggcaggga gagcgttatg cctgtttgtt ccaacgttcg
    15361 atggattctt tgatgacttt tttcgcttct tccgcatcgc cccacgattc gactttggtc
    15421 gtacccgctt ttttcaggtc tttgtagtgg ttgaagtgga actcgatttg tttgatgagc
    15481 tgttgcggca aatctgccaa agttttgtag gcgttgccgt tgttgcggtc gtcggcagga
    15541 acgcagacga ttttgtcgtc cacttcgccg tcgtcaacga atttcatcac gccgataacg
    15601 cgcgcttcca agaatacgcc ggttgccaaa ggttgttcgg taacgagcag cacgtccaat
    15661 tcgtcgccgt cttcgtccaa agtttgggga atgaagccgt agttggtcgg tttggcgaag
    15721 atggcgggtt cgacgcggtc gagttggaat gcggcgagtt tgcggttcca ctcgattttg
    15781 tggttgctgc cggcggggat ttcgttgacg acgttgatga tgccgccgtc cacatcgccg
    15841 ggggtcagga tttggttgaa gtctgccatt tggtttcctt tgtttgggaa agtttgaagt
    15901 ttgaaagtat agcacaaacg tccggctgaa aatgcgcccg atgccgtctg aaagggtgta
    15961 cgggcgcgtg ttaccgtttg cccaaaaacc tgcccagttc cagaatcgcg cgcctgttgg
    16021 acggggaaaa cactttttcc gccgcttctt ccaagccgaa ccagccgtag gagacgtgtt
    16081 cttcgggttg cagggcgatg ggcgtatcac gcgggatttc ggcagagaag aggtgttcgc
    16141 ggttttcaaa cacgcctttt ggatagcggt gccgccagtg gtggtagatt tcgtaaaccg
    16201 tgctgtcgtg ccagtcttga agctgcccgt ccgccagcag gatgccggtt tcttcccaaa
    16261 cttcgcgcct tgccgtttgg gcgacggttt cgcccggttc gaggctgccg gttaccgact
    16321 gccaaaatcc ttccggatgc gtgcgttcga tgagcaggat gccgccgtcc ccgctataaa
    16381 ggacgaccag tgcggaaacg gggtatttga gcggttttgc catcggcatc tttcggcggg
    16441 ctgcggtaat gaaggggcgg attatagcaa acgccgcacg ttatggcgtt tatccttttc
    16501 cgtatccttt tttctgcacg gatgggacgc gccggtgttt gccggtaaat tttccgttgt
    16561 gtcaaaaaga taagggcggt tgtgatttta atgcttgcca aagcgtcggg cggaaactat
    16621 aatccgaaac ttatcgagtc ggagtgtggc gcagtctggt agcgcacttg catggggtgc
    16681 aaggggtcga aggttcgaat cctttcactc cgaccaaaaa ttccgaaagc cgctttcaaa
    16741 agcggctttt ttgccgtccg tatgattatg atgtagagta cgcggcgaca gacattcaaa
    16801 tgccgtctga aaaccgttca gatggcatct ctttatctta gtttcattcc gtaccatctt
    16861 aaggaacatc aaattgggca tttcccgcaa aatatccctt attctgtcca tactggcagt
    16921 gtgcctgccg atgcatgcac acgcctcaga tttggcaaac gattctttta tccggcaggt
    16981 tctcgaccgt cagcatttcg aacccgacgg gaaataccac ctattcggca gcagggggga
    17041 acttgccgag cgcagcggtc atatcggatt gggaaaaata caaagccatc agttgggcaa
    17101 cctgatgatt caacaggcgg ccattaaagg aaatatcggc tacattgtcc gcttttccga
    17161 tcacgggcac gaagtccatt cccccttcga caaccatgcc tcacattccg attctgacga
    17221 agccggtagt cccgttgacg gatttagcct ttaccgcatc cattgggacg gatacgaaca
    17281 ccatcccgct gacggctatg acgggccaca gggcggcggc tatcccgctc ccaaaggcgc
    17341 gagggatata tacagctacg acataaaagg cgttgcccaa aatatccgcc tcaacctgac
    17401 cgacaaccgc agcaccggac aacggcttgc cgaccgtttc cacaatgccg gtagtatgct
    17461 gacgcaagga gtaggcgacg gattcaaacg cgccacccga tacagccccg agctggacag
    17521 atcgggcaat gccgccgaag ccttcaacgg cactgcagat atcgtcaaaa acatcatcgg
    17581 cgcggcagga gaaattgtcg gcgcaggcga tgccgtgcag ggtataagcg aaggctcaaa
    17641 cattgctgtc atgcacggct tgggtctgct ttccaccgaa aacaagatgg cgcgcatcaa
    17701 cgatttggca gatatggcgc aactcaaaga ctatgccgca gcagccatcc gcgattgggc
    17761 agtccaaaac cccaatgccg cacaaggcat agaagccgtc agcaatatct ttacggcagt
    17821 catccccgtc aaagggattg gagctgttcg gggaaaatac ggcttgggcg gcatcacggc
    17881 acatcctgtc aagcggtcgc agatgggcgc gatcgcattg ccgaaaggga aatccgccgt
    17941 cagcgacaat tttgccgatg cggcatacgc caaatacccg tccccttacc attcccgaaa
    18001 tatccgttca aacttggagc agcgttacgg caaagaaaac atcacctcct caaccgtgcc
    18061 gccgtcaaac ggcaaaaatg tcaaactggc agaccaacgc cacccgaaga caggcgtacc
    18121 gtttgacggt aaagggtttc cgaattttga gaagcacgtg aaatatgata cgaagctcga
    18181 tattcaagaa ttatcggggg gcggtatacc taaggctaag cctgtgtctg atgcaaaacc
    18241 gagatgggag gttgatagga agcttaataa attgacaact cgtgagcagg tggagaaaaa
    18301 tgttcaggaa ataaggaacg gtaataaaaa cagtaacttt agccaacatg ctcaactaga
    18361 gagggaaatt aataaactaa aatctgccga tgaaattaat tttgcagatg gaatgggaaa
    18421 atttaccgat agcatgaatg acaaggcttt tagtaggctt gtgaaatcag ttaaagagaa
    18481 tggcttcaca aatccagttg tggagtacgt tgaaataaat ggaaaagcat atatcgtaag
    18541 aggaaataat agggtttttg ctgcagaata ccttggcagg atacatgaat taaaatttaa
    18601 aaaagttgac tttcctgttc ctaatactag ttggaaaaat cctactgatg tcttgaatga
    18661 atcaggtaat gttaagagac ctcgttatag gagtaaataa aaatggcaat ttggaattat
    18721 cggtactacc ttatcccatc agctgctatc agaaataaat ttaatgcaaa taaagatatc
    18781 atacttgat
//
LOCUS       DAXIFD010000017        18161 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.017, whole genome shotgun sequence.
ACCESSION   DAXIFD010000017 DAXIFD010000000
VERSION     DAXIFD010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18161
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.017"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(225..782)
                     /locus_tag="ACFOCN_000471"
     CDS             complement(225..782)
                     /locus_tag="ACFOCN_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969677.1"
                     /translation="MMQKHKCLIDFILTVASQIAYADLPLSLEELLTDKGKFKLESSI
                     SYINTERNQSEFANPIYVQTSATKIATVMAMMITPVMAQNLDSQVFDSQNVKAIQLSQ
                     AEMKETQGEFVPIIAAAAFGGALGAWEYHGANLYNHGKLGTAQGAATAAGIGAATGVA
                     AKQGWLLLPEADWLEIWHGDRVFMH"
     gene            complement(1027..1185)
                     /locus_tag="ACFOCN_000472"
     CDS             complement(1027..1185)
                     /locus_tag="ACFOCN_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969678.1"
                     /translation="MKPPLPICTLSALAACTLSGQGGTQVYGEIKARDLCVTAPILLS
                     AFCLACSR"
     gene            complement(1182..2024)
                     /locus_tag="ACFOCN_000473"
     CDS             complement(1182..2024)
                     /locus_tag="ACFOCN_000473"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6969679.1"
                     /translation="MLVCNPYEVVIHGTTSSGKIFRPSDWAERLCGILSSFTKDHRLS
                     YSKWVRPMLVDNIRCVAVDKKLETDNPQMFRFLMDFAADNDLRVIDCKALLEEREQGG
                     QNNPADEHVMLAQAIEEKHAAEKAQEQTASGASYVLREIGADDTATAFAALSVLRSAL
                     TDINRFTEQINKVQRPQGYRLLGIFEEGKHNAVAVCGFREACTLASGRHIHIDDIVTL
                     PQSRRKGYASRLLEEVRKIGAETGVTKIHLNVHVNHDRADAHRLYFKNGFEICAYHFR
                     CDPK"
     gene            2263..3183
                     /gene="pyrB"
                     /locus_tag="ACFOCN_000474"
     CDS             2263..3183
                     /gene="pyrB"
                     /locus_tag="ACFOCN_000474"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HFC6969680.1"
                     /translation="MPNPLYRQHIISISDLSREQLECLLQTALKLKAHPRGDLLEGKL
                     IGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAI
                     IQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAG
                     DLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAGCRYRILGSLEEAAE
                     WADILYMTRVQRERFDEQEFAKIQGKFNLDASMLARAKPNLRVLHPLPRVDEIHPDVD
                     ATPHAYYFEQATNGVYARMAILSLVLNEEV"
     gene            3193..3651
                     /gene="pyrI"
                     /locus_tag="ACFOCN_000475"
     CDS             3193..3651
                     /gene="pyrI"
                     /locus_tag="ACFOCN_000475"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009347 - aspartate carbamoyltransferase
                     complex [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HFC6969681.1"
                     /translation="METPKLSVEAIEKGTVIDHIPAGRGLTILRQFKLLHYGNAVTVG
                     FNLPSKTQGSKDIIKIKGVCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEI
                     AEVFRCPNTNCAGHGEPVKSRFYVKKHNGQTRLKCHYCEKTYSRDSVAEA"
     gene            3716..4381
                     /locus_tag="ACFOCN_000476"
     CDS             3716..4381
                     /locus_tag="ACFOCN_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969682.1"
                     /translation="MMMHASVQSRFAPILYVLIFFAGFLTAQIWFNQKAYTEELPPLL
                     SALSAVALVWLAWAFVSARSKAKAEKFYREKMIQNESIHPVLHASLQHLEHKPQMLAL
                     LVKNHGKGMAEQVRFKAEVLPDDEDARTIAAELAKMDMFALGTDAVASGETYGRVFAD
                     IFELSAALEGRAFKGMLKLTAEYKNIFGDACRSETALDLGALNQALQEISKTSEKSKR
                     IFY"
     gene            complement(4444..5661)
                     /locus_tag="ACFOCN_000477"
     CDS             complement(4444..5661)
                     /locus_tag="ACFOCN_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6969683.1"
                     /translation="MQRRIITLLCAAGMAFSTQTLAANLEVRPNAPERYTVKQGDTLW
                     GISGKYLYSPWQWGRLWDANRDQIHNPDLIYPDQVLVLRHVDGEPRLGLEQTDGIPVV
                     KMSPDKEVSGYGIPAIDVNFYRIFMRHPQIVSRKETAAAPRLLSGPEGRLLYTKGTRV
                     YTKGLKEPGRYLTYRINKNITDPDTGKFLGQEVAFSGIVRSLDYTDSVLEQRSKQAGE
                     RPKDNEYHTRTHPLITPLRTPSIQPLVVETAISEIQQGDYLMKMPEDTDRFNMMPHEP
                     SRPVQAKIVSVFEGTRIAGQFQTITIDKGEADGLDKGTVLSLYKRKKTMQVDLSNNFK
                     SRDTVELISTPAEEVGLAMVYRTSEHLSSAIILENISDISVGDTAANPGRDLDNIPDQ
                     GRSRVKFGFDRSE"
     gene            5845..6348
                     /gene="def"
                     /locus_tag="ACFOCN_000478"
     CDS             5845..6348
                     /gene="def"
                     /locus_tag="ACFOCN_000478"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HFC6969684.1"
                     /translation="MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRG
                     IGLAATQVDVHERVVVMDLTEDRSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT
                     RAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLK
                     KRQKHTI"
     gene            6435..7361
                     /gene="fmt"
                     /locus_tag="ACFOCN_000479"
     CDS             6435..7361
                     /gene="fmt"
                     /locus_tag="ACFOCN_000479"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HFC6969685.1"
                     /translation="MKVIFAGTPDFAAAALKAVAAAGFEIPLVLTQPDRPKGRGMQLT
                     APPVKQAALELGLRVAQPEKLRNNAEALQMLKEVEADVMVVAAYGLILPQEVLDTPKH
                     GCLNIHASLLPRWRGAAPIQRAIEAGDAETGVCIMQMDIGLDTGDVVSEHRYAIQPTD
                     TANEVHDALMEIGAAAVVADLQQLQSKGRLNAVKQPEEGVTYAQKLSKEEARIDWSES
                     AAVIERKIRAFNPVPAAWVEYQGKPMKIRRAEVVAQQGAAGEVLSCSADGLVVACGEN
                     ALKITELQPAGGRRMNIAAFAAGRHIEAGTKL"
     gene            7440..8699
                     /gene="rsmB"
                     /locus_tag="ACFOCN_000480"
     CDS             7440..8699
                     /gene="rsmB"
                     /locus_tag="ACFOCN_000480"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HFC6969686.1"
                     /translation="MSMALAQKLAADSIAAVAEGRNLQDVLAQIRTAHPDLTAQENGA
                     LQDIAYGCQRYLGSLKHMLAQMLKKPIDNPQLESLLLAALYQLHYTRNAPHAVVNEAV
                     ESIAKIGRGQYRSFANAILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKH
                     WHNITAALQSHPPMTLRVNRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRL
                     PGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDID
                     AGRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDAILADVPCTASGVARRNPD
                     VKWLRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHA
                     DAEPIESRVLLPNKHQDGFYYALIQKH"
     gene            8665..9264
                     /locus_tag="ACFOCN_000481"
     CDS             8665..9264
                     /locus_tag="ACFOCN_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HFC6969687.1"
                     /translation="MAFITRLFKSIKQWLVLLPMLSVLPDAAAEGIDVSRAEARITDG
                     GQLSISSRFQTELPDQLQQALRRGVPLNFTLSWQLSAPIIASYRFKLGQLIGDDDNID
                     YKLSFHPLTNRYRVTVGAFSTDYDTLDAALRATGAVANWKVLNKGALSGAEAGETKAE
                     IRLTLSTSKLPKPFQINALTSQNWHLDSGWKPLNIIGNK"
     gene            9264..11381
                     /locus_tag="ACFOCN_000482"
     CDS             9264..11381
                     /locus_tag="ACFOCN_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6969688.1"
                     /translation="MRRFLPIAAICAVVLLYGLTAATGSTSSLADYFWWIVAFSAMLL
                     LVLSAVLARYVILLLKDRRDGVFGSQIAKRLSGMFTLVAVLPGVFLFGVSAQFINGTI
                     NSWFGNDTHEALERSLNLSKSALNLAADNALGNAIPVQIDLISTASLSGNMGRVLEHY
                     ANGFTQLSLYNAASGKIEKSINPHKLDQPFPDKARWEKIQQAGSVRDLESIGGVLYAQ
                     GWLSAGTHNGRDYALFFRQPVPKGVAEDAVLIEKARAKYAELSYSKKGLQTFFLATLL
                     IASLLSIFLALVMALYFARRFVEPVLSLAEGAKAVAQGDFSQTRPVLRNDEFGRLTKL
                     FNHMTEQLSIAKEADERNRQREEAARHYLECVLEGLTTGVVVFDEQGCLKTFNKAAEQ
                     ILGMPLTPLWGSSRHGWHGVSAQQSLLAEVFAAIGAAAGTDKPVHVKYAAPDDAKILL
                     GKATVLPEDNGNGVVMVIDDITVLIHAQKEAAWGEVAKRLAHEIRNPLTPIQLSAERL
                     AWKLGGKLDEQDAQILTRSTDTIVKQVAALKEMVEAFRNYARSPSLKLENQDLNALIG
                     DVLALYEAGPCRFAAELAGEPLMVAADTTAMRQVLHNIFKNAAEAAEEADVPEVRVKS
                     EAGQDGRIVLTVCDNGKGFGKEMLHNAFEPYVTDKPAGTGLGLPVVKKIIEEHGGRIS
                     LSNQDAGGACVRIILPKTVKTYA"
     gene            11374..12651
                     /locus_tag="ACFOCN_000483"
     CDS             11374..12651
                     /locus_tag="ACFOCN_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HFC6969689.1"
                     /translation="MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRH
                     QVRPAMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGALDF
                     LEKPISLQKLLSAVENALKHGAAKIETGPVFDKLGNSAAIQEMNCEVEAAAKRTSPVF
                     LTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSR
                     NIQTGIAFIIGKAERCRVRVVASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHE
                     DIPFLIQGIACNVAESQKIAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQ
                     EIGAAAVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSK
                     VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE"
     gene            12742..13935
                     /gene="dprA"
                     /locus_tag="ACFOCN_000484"
     CDS             12742..13935
                     /gene="dprA"
                     /locus_tag="ACFOCN_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HFC6969690.1"
                     /translation="MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQV
                     ALAVRHKQAAEAWRNAEKRASARQAAEAALEWEMRDGCRLMLLQDEDFPEMLTQGLTA
                     PPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPVVSGMASGIDT
                     AAHQGALQAEGGTIAVWGTGIDRIYPPSNKNLAYEIAERGLIVSEFPLDTRPFAGNFP
                     RRNRLIAALSQVTLVVEAALESGSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIK
                     DGAKLTECLDDILNECPRLLQNEGASSYSINKGMPEKRITAVQTASDQLSLPEGKMPS
                     EKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRY
                     QRIRT"
     gene            13961..14422
                     /locus_tag="ACFOCN_000485"
     CDS             13961..14422
                     /locus_tag="ACFOCN_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HFC6969691.1"
                     /translation="MTEVIAYLIEHFQDFDTCPPPEDLGMLLEEAGFDTMEIGNTLMM
                     MEVLLNSSEFSAEPADSGALRVYSKEETDNLPQEVMGLMQYLIEEKAVSCEQREIIIH
                     ALMHIPGDEITVDTAKVLTLLLLWANKSELPVLVGDELMSALLLDNKPTMN"
     gene            14494..16800
                     /gene="topA"
                     /locus_tag="ACFOCN_000486"
     CDS             14494..16800
                     /gene="topA"
                     /locus_tag="ACFOCN_000486"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HFC6969692.1"
                     /translation="MAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAV
                     DPDNGFAMKYQLISRNGKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKR
                     GLKNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWK
                     KIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGA
                     KLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGF
                     TTDRTMRTAQQLYEGIDVGQGAIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLP
                     SAAKQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTP
                     AKFDQTTVDITVGKGVFRVTGQVQTFAGFLSVYEESSDDEEGEDSKKLPEMSEGDKLP
                     VDKLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFM
                     PTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIAGGKRQWIPLMDKFWKPFIKQVE
                     EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGRFVACAGYPECSYTRNVNETAEE
                     AAERIAKAEAEQAELDGRECPKCGGRLVYKYSRTGSKFIGCANYPKCKHVEPLEKPKD
                     TGVQCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAESCPKCAWPVLTIKT
                     TKRWGVEKVCPQKECGWKEQIEPPAPKE"
     gene            complement(16873..17568)
                     /locus_tag="ACFOCN_000487"
     CDS             complement(16873..17568)
                     /locus_tag="ACFOCN_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969693.1"
                     /translation="MMKDLNLSNSLFKGYNDKHGLMICGYEWGWSKADEAAYVAGEYK
                     LPENKIDHTFANKSLYFGEQAKKWRYDNTIKNWFEMWGHPLDENGLGGAFEKSLVQTN
                     WAATQGNTIDNPDKFTQPEHIDNFLYHIEKLRPKVILFMGSRLADFLNNQNVLPRFEQ
                     LVGKQTKPLETVQKEFDGTRFNVKFQSFEDCEVVCFPHPSASRGLSYDYIALFAPEMN
                     RILSDFKTTRGFK"
BASE COUNT         4439 a         4728 c         5045 g         3949 t
ORIGIN      
        1 attttggaag tttaaattta ttaataataa aataatttat cgtagcgcaa ataaatccca
       61 aaattggaac gattagaaaa aaaattaata cacccatcat catgcaaact ctatattaat
      121 aaatagctaa ctaattctat tgtggaaatt agttagctaa ctaaaagtta ttaatgatta
      181 tttccgagaa ttgactgcat tgttggcagc attggcccca aaacctagtg catgaatacc
      241 cggtctccat gccaaatttc cagccaatcc gcctccggca gcagcagcca gccctgtttt
      301 gccgctactc ctgttgccgc accgattcct gccgcagtag ccgcgccttg cgcagttcct
      361 aatttaccat gattatacaa attagcacca tgatactccc atgcacctaa tgcaccgcca
      421 aaagcagcgg ctgcaataat gggaacaaat tcaccttgtg tttctttcat ttcagcctgt
      481 gataattgaa ttgctttcac attttggctg tcaaaaactt ggctgtctaa attttgcgcc
      541 attacaggtg taatcatcat agccattaca gttgcaattt tcgttgcgct ggtttgcaca
      601 taaataggat tagcaaattc gctttgattg cgttcagtgt tgatgtagct aatactgctt
      661 tctagtttga atttaccctt gtcagtcaat aattcttcca aacttaaagg taagtcagca
      721 taagcaattt ggctggcaac agtcaaaata aaatctatta gacatttgtg tttttgcatc
      781 atttcgtttg attttctagt ttttgagaat gatacaaagt ttttttacaa agtaaagagt
      841 cactctgaaa aacatttttt cattataaat caaaatattg atagaataaa tagcgagcat
      901 cgattcacgg tgtactttag tgcaaagcgt acaacgcgag cctgaaccac cagccgcaac
      961 aggaaaagaa agccgataga gtgcaatgct tgccaacgtg caagcgagct tgcaagaacg
     1021 cttggctcaa cgagagcagg caagacagaa agcagaaagc aggataggag cggtaacgca
     1081 aaggtctcgg gctttgattt cgccgtaaac ctgagtgccg ccttgtccgg aaagggtgca
     1141 ggcggcgagt gccgacaggg tgcagatggg gagggggggt ttcatttggg gtcgcaacgg
     1201 aagtggtatg cgcagatttc aaaaccgttt ttgaaataca ggcggtgcgc gtcggcacgg
     1261 tcgtggttga cgtggacgtt gaggtggatt ttggttaccc ctgtttccgc gccgattttg
     1321 cggacttctt ccaaaaggcg cgaggcgtag cctttgcggc ggctttgcgg cagggtaacg
     1381 atgtcatcga tgtggatgtg gcggccgctg gcgagggtgc aggcttcgcg gaagccgcag
     1441 acggcgacgg cattgtgttt gccttcttca aaaataccca gcaggcggta gccttggggg
     1501 cgttggactt tgttgatctg ttcggtaaag cggttgatgt cggtcagggc ggaacgcaaa
     1561 acgctcaagg ctgcaaaggc ggtggcggtg tcgtccgcgc cgatttcgcg caaaacgtag
     1621 gatgcgcccg aggcggtctg ttcctgtgct ttctcggcgg cgtgtttttc ttcgattgcc
     1681 tgtgccagca tgacgtgttc gtcggcaggg ttgttttgtc cgccctgttc gcgttcttcg
     1741 agcagggctt tgcagtcgat gacgcgcagg tcgttgtcgg cggcaaagtc catcaggaag
     1801 cggaacattt gggggttgtc ggtttccagt tttttatcga cggcgacgca gcggatgttg
     1861 tccaccagca tggggcgcac ccatttcgaa taggaaagcc tgtggtcttt ggtgaacgag
     1921 gacagaatgc cgcacaggcg ttccgcccag tcgctgggac ggaaaatctt gccggaactc
     1981 gttgtgccgt ggatgacgac ttcgtagggg ttgcagacta acatggcggc ttcctgaaaa
     2041 gaaatgtctg gcgcgattat accttatgct tatgcgggcg tgtttggata tgccgtctga
     2101 aaagtacggg attcgtgcgg taaaactttg cggcggcaaa tgtgcgataa tacgcgccgt
     2161 attgccgctt ttgcgaagct gttccgcaaa catacgggcg gcgtggacga cgtataaccg
     2221 gatacccgcc tgacgcgggt tttttacgga aggggggcaa aaatgcctaa tccgctttac
     2281 agacagcata tcatctccat ttcggatttg tcgcgcgaac agttggaatg cctgcttcag
     2341 acggcattga agctgaaggc gcatccgcgc ggcgatttgt tggaaggcaa acttatcggt
     2401 tcgtgcttct ttgaaccgtc cacgcgcacg aggctgtcgt ttgaaacggc ggtgcagcgg
     2461 ctgggcggca aggtcatcgg cttttcggac ggcgcgaata ccagtgccaa aaaaggcgag
     2521 acgcttgccg ataccgcccg catcatttcc ggctacaccg acgcaatcat ccaacgccac
     2581 cccaaagacg gcgcggcgcg cgtggcagcg gagttttcgc gcgtccccgt catcaacgcc
     2641 ggcgacggca ccaaccagca ccccagccag accttgttgg atctggttac catttatgaa
     2701 acgcagggac gtttggacaa gctcaaaatc gccatggcgg gcgacttgaa atacggacgt
     2761 accgtgcatt cgctttgtca ggcgttgaaa cgctggggct gcgaatttgc ctttgtttcg
     2821 ccgcccagcc tcgcgatgcc cgactacatt accgaagagt tggacgaagc cggctgccga
     2881 taccgtatcc tcggtagttt ggaagaagcg gcggaatggg cggacatcct gtatatgacc
     2941 cgtgttcaac gcgaacgttt cgacgaacag gaatttgcca aaatccaagg caaattcaat
     3001 ctcgacgcat ccatgcttgc ccgcgccaaa ccgaacctgc gcgtgctgca ccctttgccg
     3061 cgcgtggacg aaatccatcc cgatgtcgat gctacgccgc atgcctatta tttcgagcag
     3121 gcgaccaacg gcgtttatgc gcgtatggcg atattgtcgc tggtgttgaa cgaagaagtg
     3181 tgaggaaccg atatggaaac cccgaaactc agtgtcgaag ccattgaaaa aggtacggtt
     3241 atcgaccata ttcccgccgg cagggggctg accatcctgc gccagttcaa acttttgcac
     3301 tacggcaacg cggtaaccgt gggcttcaac ctgcccagca aaacccaagg cagcaaagac
     3361 atcatcaaaa tcaaaggcgt gtgcttggac gacaaagccg ccgaccgcct cgccctgttc
     3421 gcccccgaag cggtggtcaa taccatcgac aatttcaagg tcgtgcagaa gcggcatttg
     3481 aacctgcccg atgaaattgc cgaagtgttc cgttgcccga acacgaattg cgccggccac
     3541 ggcgagccgg tcaaaagccg gttttatgtt aaaaaacaca acgggcagac gcggctgaaa
     3601 tgccattact gcgaaaaaac ctacagccgg gattcggtgg cggaagcctg acggattccc
     3661 ttaaaccgag cgggcggcat ttcgtctgcc gcttgttttg ccaatctgaa atggaatgat
     3721 gatgcacgct tctgtccaaa gccgtttcgc accgatactt tatgttttga ttttctttgc
     3781 cggttttttg accgcgcaaa tttggttcaa tcagaaagcc tatactgaag agctgcctcc
     3841 gcttctgtcc gcattgtccg ccgtcgcgct ggtgtggctg gcgtgggcgt tcgtgtcggc
     3901 gcgttcaaag gctaaggcgg aaaagttcta ccgcgaaaaa atgatacaga acgaaagcat
     3961 acaccccgtc ctgcacgctt ctttgcaaca cttggaacac aagccgcaaa tgctcgccct
     4021 gctggtcaaa aaccacggca aagggatggc ggaacaggtc aggttcaagg cggaagtgct
     4081 gcccgacgac gaagacgcgc gcacgattgc cgccgagttg gcaaaaatgg atatgtttgc
     4141 attggggacg gacgcggtcg cctcgggcga aacctatgga cgcgtgttcg ccgatatttt
     4201 cgagttgtcg gcggctttgg aagggcgcgc gttcaaagga atgttgaaac tgacggcgga
     4261 atataaaaac atcttcggcg atgcctgccg ttcggaaacg gcgttggatt tgggcgcgct
     4321 caatcaggcg ttgcaggaga tttcaaaaac atcggaaaag tccaaacgga tattttattg
     4381 aagatggaaa aatgccgtct gaaacggaag gtgtttcaga cggcattttt gtcggatgat
     4441 taattattcg gagcggtcga agccaaactt cacgcggctg cggccctgat ccggtatatt
     4501 gtccaaatcg cgtcccggat tggcggcggt gtcgcctacg gaaatatcgg agatgttttc
     4561 caaaatgatg gcggacgaca ggtgttcgga ggtgcggtaa accattgcca agcccacttc
     4621 ttcggcagga gtggaaatca gctcgacggt atccctgctt ttgaaattgt tggagaggtc
     4681 gacctgcatc gttttcttgc gtttgtagag gctcaaaacc gtgcctttgt ccaaaccgtc
     4741 cgcctcgcct ttgtcgatgg tgatggtttg aaactggccg gcaatccttg taccttcaaa
     4801 cacggaaacg attttagcct gaaccgggcg ggacggttcg tgcggcatca tgttgaagcg
     4861 gtcggtgtct tccggcattt tcatcaggta gtcgccctgc tgtatttcgg aaatggcggt
     4921 ttcgaccacc agcggctgta tcgaaggggt gcgcagcggg gtaatcaaag gatgggtgcg
     4981 ggtatggtat tcgttgtctt tcggccgttc tccagcctgt ttcgagcgtt gttcgaggac
     5041 agagtcggta tagtcgaggg agcgcacgat gccgctgaat gcgacttcct gcccgaggaa
     5101 tttacccgta tccggatcgg tgatgttttt attgattcgg taggtcaggt agcggcccgg
     5161 ctctttcagg cctttggtgt aaaccctggt gcctttggtg tacagcagcc tgccttccgg
     5221 gcccgagagc aggcgcggcg cggcagcggt ttctttgcgg gaaacgattt gcgggtgccg
     5281 cataaagatg cggtagaagt tgacatcgat ggcgggaata ccgtatccgg acacttcctt
     5341 atccggactc attttgacga cggggatgcc gtctgtctgt tccaagccga ggcgcggttc
     5401 gccgtcaacg tggcgcaaca ccaatacctg gtccggataa atcaggtcgg gattgtggat
     5461 ttgatcccgg ttcgcgtccc acaggcggcc ccattgccac gggctgtaca ggtatttgcc
     5521 cgaaatgccc cacagggtgt cgccctgttt gaccgtgtag cgttccggcg cgttcgggcg
     5581 cacctccaaa tttgccgcca aagtttgtgt tgagaatgcc atacctgccg cgcagagcag
     5641 ggttataata cgacgttgca taaccgttcc ccttatctga taaatttcgg tttgtcttgc
     5701 ttgattgggt tggaaaaagc ggcggcagcc cctcgggatg tgccgcgtga taaaaaatgt
     5761 tccgcatttt aacatcgaat tatccgcacc atcacggtaa ttatgaaaaa caggcggcgt
     5821 atccgccgaa ggaaagagaa aattatggct ttattgaata tcttgcaata tcccgacgag
     5881 cgtctgcaca cggtggcaaa gcctgtcgaa caagtcgacg agcgcatccg gaagctgatt
     5941 gccgatatgt ttgaaacgat gtacgaatcg cgcggcatcg ggctggcggc gacgcaggtc
     6001 gatgtgcacg agcgcgtggt cgtgatggat ttgaccgaag accgcagcga accgcgcgtg
     6061 ttcatcaacc ccgtcatcgt tgaaaaagac ggcgaaacca cttacgaaga gggctgcctg
     6121 tccgtgccgg gcatttacga caccgtaacc cgcgccgaac gcgtcaaggt cgaggctttg
     6181 aacgaaaaag gcgaaaagtt cacgctggag gcggacggct tgctggcgat ttgcgtgcag
     6241 cacgagttgg accacctgat gggcatcgtg tttgtcgaac gcctgtcgca gctcaagcag
     6301 ggacgcatca aaaccaagct gaaaaaacgt cagaaacata cgatttgacc cttttgccgt
     6361 gccgtctgaa cgctgcaaag ttttcagacg gcacggtctt gtccgacaac cttacgcata
     6421 cgcaggaata tgctatgaaa gtcatctttg ccggcacgcc cgattttgcc gccgccgcct
     6481 taaaagccgt tgccgccgcc ggttttgaaa tcccgctggt gctgacccag cccgaccgtc
     6541 cgaaagggcg cggtatgcaa ctgaccgccc cgcccgtcaa acaagccgcg ctggaactcg
     6601 gtttgcgcgt ggcacagccc gaaaaactgc gtaacaacgc cgaagccctg caaatgctca
     6661 aagaggtcga ggcagacgta atggtggttg ccgcctacgg tttgattctg ccgcaggaag
     6721 tgttggatac gccgaaacac ggctgcctca acatccacgc ttcgctgtta ccccgttggc
     6781 gtggcgcggc gccgattcaa cgcgcgattg aagccggcga tgccgagaca ggcgtgtgta
     6841 ttatgcagat ggacatcggt ttggacaccg gcgatgtggt cagcgaacac cgctacgcca
     6901 tccaaccgac cgataccgcc aacgaagtcc acgacgcgct gatggaaatc ggtgcggcgg
     6961 cggttgttgc cgatttgcaa cagcttcaaa gcaaaggccg tctgaacgcg gtcaaacagc
     7021 ccgaagaagg tgttacttac gcccaaaaac taagcaaaga agaggcgcgt atcgattgga
     7081 gcgaaagcgc ggcggttatc gaacgcaaaa tccgcgcctt caaccccgtg cctgccgcgt
     7141 gggttgagta tcagggcaag ccgatgaaaa tccggcgggc ggaagtggtg gcgcaacaag
     7201 gcgcggcagg cgaagtgttg tcctgttcgg cggacggttt ggtcgttgcc tgcggcgaaa
     7261 acgcgctgaa gattaccgaa ttgcagcctg ccggcggcag gcgtatgaat atcgcggcgt
     7321 ttgcagcagg acggcatatc gaagcaggga cgaagctgta aatcccttca gacggcattc
     7381 cgatccgcaa acgggaatgc cgcctgaaac catcagttga agaaagcgaa tcacataata
     7441 tgagtatggc acttgcccaa aaacttgccg ccgacagcat tgcggcggtt gccgaaggac
     7501 gcaaccttca ggacgtgttg gcgcaaatcc gcaccgcgca tcccgacctt acggcacagg
     7561 aaaacggcgc gttgcaggac atcgcctacg gctgccagcg ttatttgggc agtttgaaac
     7621 atatgctcgc gcagatgctg aaaaagccga ttgacaaccc gcagctcgaa agcctgcttt
     7681 tggcggcgtt gtaccaactg cattacacgc gcaacgcgcc gcacgccgtg gtcaacgaag
     7741 cggtggaaag catagccaaa atcggacgcg ggcagtaccg ttcgtttgcc aacgcgattt
     7801 tgcgccgctt tttgcgcgaa cgcgacaagc ttgcggcttc ctgtaaaaaa gacgatgtgg
     7861 cgaaacacaa cctgccgctg tggtgggtgg cttacctgaa aaaccattat ccgaaacact
     7921 ggcacaacat caccgccgcg ctacaatccc atccgccgat gacgttgcgc gtcaaccgcc
     7981 gacacggcaa tgccgaaagc tatttggaaa aactggctgc ggaaggtatt ccggccaggg
     8041 cgttggacga atatgcggtt acgttggaag aagccgtgcc ggtaaaccgt ctgcccggtt
     8101 tttcagacgg cattgtttcg gtacaggact tcggtgcgca gcaggcggcg tatcttctta
     8161 acccgaaaga cggcgaacgg attttggacg cgtgcgccgc gccgggcggc aagacggggc
     8221 atatcttgga actggcggat tgccgcgtta ccgccttgga catcgatgca ggccgtctga
     8281 agcgtgtgga ggacaatatc gcccgtttgg gctttcagac ggcatcggcg gcgtgtgccg
     8341 atgcgcggga tttggcggcg tggtatgatg gaaagccttt cgacgcaatc cttgccgacg
     8401 tgccatgcac cgcttccggc gtggcgcggc gcaatcccga cgtgaaatgg ctgcgccgtc
     8461 cgaccgacgc gctcaaaacc gcccgccagc aggaagccct gctggacgca ctttggcaga
     8521 cgctgaaaca gggcggcaga atgctgcttg ccacctgttc cgtgttcgtc gaagaaaacg
     8581 acgggcaatt gcaaaaattc ctcaaccgcc atgccgatgc cgaaccgatc gaatcgcggg
     8641 tgcttttacc gaacaaacac caagatggct tttattacgc gcttattcaa aagcattaaa
     8701 caatggcttg tgctgctgcc gatgctttcc gttttgccgg acgcggcggc ggaggggata
     8761 gatgtgagcc gcgccgaagc gaggataacc gacggcgggc agctttccat cagcagccgc
     8821 ttccaaaccg agctgcccga ccagctccaa caggcgttgc gccggggcgt gccgctcaac
     8881 tttaccttaa gctggcagct ttccgccccg ataatcgctt cttatcggtt taaattgggg
     8941 caactgattg gcgatgacga caatattgac tacaaactga gtttccatcc gctgaccaac
     9001 cgctaccgcg ttaccgtcgg cgcgttttcg acagactacg acaccttgga tgcggcattg
     9061 cgcgcgaccg gcgcggttgc caactggaaa gtcctgaaca aaggcgcgct gtccggtgcg
     9121 gaagcagggg aaaccaaggc ggaaatccgc ctgacgctgt ccacttcaaa actgcccaag
     9181 ccatttcaaa tcaatgcatt gacttctcaa aactggcatt tggattcggg ttggaaacct
     9241 ctaaacatca tcgggaacaa ataatgcgcc gttttctacc gatcgcagcc atatgcgccg
     9301 tcgtcctgtt gtacggactg acggcggcaa ccggcagcac cagttcgctg gcggattatt
     9361 tctggtggat agttgcgttc agcgcaatgc tgctgctggt gttgtccgcc gttttggcac
     9421 gttatgtcat attgctgttg aaagacaggc gcgacggcgt attcggttcg cagattgcca
     9481 aacgcctttc tgggatgttt acgctggttg ccgtactgcc cggcgtgttt ctgttcggcg
     9541 tttccgcaca gttcatcaac ggtacgatta attcgtggtt cggcaacgat acccacgagg
     9601 cgcttgaacg cagcctcaat ttgagcaagt ccgcattgaa tctggcggca gacaacgccc
     9661 ttggcaacgc catccccgtg cagatagacc tcatcagcac cgcctcccta tccggcaata
     9721 tgggcagggt gctggaacat tatgccaacg ggtttacaca gttgtccctt tacaatgccg
     9781 caagcggcaa aatcgaaaaa agcatcaacc cgcacaagct cgatcagccg tttccggata
     9841 aggcgcgttg ggaaaaaatc caacaggcgg gttcggtcag ggatttggaa agcataggcg
     9901 gcgtattgta cgcgcagggc tggctgtcgg cgggtacgca caacgggcgc gattacgcct
     9961 tgtttttccg tcagccggtt cccaaaggcg tggcagagga tgccgtctta atcgaaaagg
    10021 caagggcgaa atatgctgag ttgagttaca gcaaaaaagg tttgcagacc tttttcctgg
    10081 caaccctgct gattgcctcg ctgctgtcga tttttcttgc actggtcatg gcactgtatt
    10141 tcgcccgccg tttcgtcgaa cccgtcctat cgcttgccga gggggcaaag gcggtggcgc
    10201 aaggcgattt cagccagacg cgccccgtgt tgcgcaacga cgagttcgga cgcttgacca
    10261 agttgttcaa ccacatgacc gagcagcttt ccatcgccaa agaagcagac gagcgcaacc
    10321 gccagcgcga ggaagccgcc agacattatc ttgaatgcgt gttggagggg ctgaccacgg
    10381 gcgtggtggt gtttgacgaa caaggctgtc tgaaaacctt caacaaagcg gcggaacaga
    10441 ttttggggat gccgcttacc cccctgtggg gcagcagccg gcacggttgg cacggcgttt
    10501 cggcgcagca gtccctgctt gccgaagtgt ttgccgccat cggcgcggcg gcaggtacgg
    10561 acaaaccggt ccatgtgaaa tatgccgcgc cggacgatgc caaaatcctg ctgggcaagg
    10621 caaccgtcct gcccgaagac aacggcaacg gcgtggtaat ggtgattgac gacatcaccg
    10681 ttttgataca cgcgcaaaaa gaagccgcgt ggggcgaagt ggccaaacgg ctggcacacg
    10741 aaatccgcaa tccgctcacg cccatccagc tttccgccga acggctggcg tggaaattgg
    10801 gcgggaagct ggatgagcag gatgcgcaaa tcctgacgcg ttcgaccgac accatcgtca
    10861 aacaggtggc ggcattgaag gaaatggtcg aagcattccg caattatgcg cgttcccctt
    10921 cgctcaaatt ggaaaatcag gatttgaacg ccttaatcgg cgatgtgttg gcattgtatg
    10981 aagccggtcc gtgccggttt gcggcggagc ttgccggcga accgctgatg gtggcggcgg
    11041 atacgaccgc catgcggcag gtgctgcaca atattttcaa aaatgccgcc gaagcggcgg
    11101 aagaagccga tgtacccgaa gtcagggtaa aatcggaagc ggggcaggac ggtcggattg
    11161 tcctgacggt ttgcgacaac ggcaaagggt tcggcaagga aatgctgcac aacgccttcg
    11221 agccgtatgt aacggacaaa ccggcgggaa cgggattggg tctgcctgtg gtgaaaaaaa
    11281 tcattgaaga acacggcggc cgcatcagcc tgagcaatca ggatgcgggt ggcgcgtgtg
    11341 tcagaatcat cttgccaaaa acggtaaaaa cttatgcgta gcagcgatat tttaattgta
    11401 gacgacgaaa tcggcatccg cgacctgctg tcggaaatcc tgcaggacga aggttattcg
    11461 gtcgcattgg cggaaaacgc cgaagaggcg cgcaagctgc gccatcaggt acgcccggcg
    11521 atggtgttgc tggatatttg gatgcccgat tgcgacggca tcaccctttt gaaggagtgg
    11581 gcgaaaaacg ggcagctcaa tatgccggtg gtgatgatga gcgggcatgc cagcatcgat
    11641 accgccgtag aagcgaccaa aatcggcgcg ctcgactttt tggaaaaacc gatttccctg
    11701 caaaagctgc tgtctgccgt cgaaaacgcg ttgaaacacg gtgcggcgaa aatcgaaacg
    11761 gggcctgtat tcgacaagct gggcaacagt gcggcgattc aggagatgaa ctgcgaagtc
    11821 gaagcggcgg caaagcgcac gtcccctgta tttttgacgg gcgaagcggg ttcgccgttt
    11881 gaaaccgtgg cgcgctattt ccataaaaac ggtacgccgt gggtcagtcc ggcaagggtc
    11941 gaatatctga tcgatatgcc gatggaactg ttgcagaagg cggagggcgg cgttttgtat
    12001 gtcggcgaca tcgcccaata cagccgcaat atccaaaccg gcattgcctt tatcatcggc
    12061 aaggcagaac gctgccgcgt cagggtggtc gcatcgggca gcagggcggc aggttcagac
    12121 ggcattgcct gcgaggaaaa gctggcggaa ctgctgtcgg aatcggtcgt ccgtattccg
    12181 ccgctgcgta tgcagcatga agatattccc ttcctgatac aggggattgc ctgcaatgtg
    12241 gcggaaagcc aaaagattgc gcctgcctca ttcagtgaag aggcacttgc cgcattgacc
    12301 cgttacgact ggccgggaaa tttcgaccaa ctgcaaagcg tcgttgcaac gctgttgttg
    12361 gaggcggacg gacaggaaat cggcgcggcg gcggtttctt cccttttggg gcagaatgtg
    12421 cctgccgagg gagcggaaga tatggtgggc gggtttaatt tcaacctgcc cctgcgcgaa
    12481 ttgagggagg aggtggagcg gcgttatttc gagtaccaca tcgcccaaga aggtcagaat
    12541 atgagcaaag tggcgcagaa ggtcggtttg gaacgcacgc acctttaccg caaactcaaa
    12601 cagctcggca tcggcgtttc gcgccgggcg ggggaaaaaa ccgaagaata ggcccggacg
    12661 gccggttttc cggctgcggg cttttgtttt cagacggcat ttggtgcaaa tgccgtctga
    12721 aatcgtaagg ggacggattt tatgacagag gacgaacgtt tcgcgtggct gcaattggcg
    12781 tttacgccct atatcggcgc ggaaagcttc ctgctgctgc tgcgccgttt cggcagcgcg
    12841 tcaaacgccc tgtccgcacc ggcggaacag gtcgccctgg cggtgcggca caagcaggcg
    12901 gccgaggctt ggcgcaatgc ggaaaaacgc gcctcggcgc ggcaggcggc agaagcggcg
    12961 ttggaatggg aaatgcggga cggatgccgt ctgatgctgc ttcaggatga agatttcccc
    13021 gaaatgctga cgcaggggct gaccgcgccg ccggttttgt ttttgcgcgg caacgtgcgg
    13081 ctgctgcaca agccttccgc cgccatcgtc ggcagccgcc atgccacgcc gcaggcgatg
    13141 cggattgcca aagatttcgg cagggcgttg ggtgggaaag gcattcccgt cgtgtcgggt
    13201 atggcttcgg gcatcgacac cgccgcccat cagggcgcgt tgcaggcaga aggcggcacc
    13261 atcgccgtgt gggggacggg catagaccgc atttatccgc cgtccaataa aaaccttgct
    13321 tatgaaattg ccgaaagggg attgattgtc agcgagttcc ctttggacac gcgtccgttt
    13381 gcaggcaact ttccgcgccg caaccgcctg attgccgcac tgtcgcaagt aacgctggtg
    13441 gtcgaggccg ccttggaatc cggttcgctg attaccgccg gtttggcggc agaaatgggg
    13501 cgcgaggtaa tggcggtacc cggttcgata gacaacccgc acagcaaagg ctgccacaaa
    13561 ctgattaaag acggcgcgaa actgacggaa tgcctggacg acatcctgaa cgaatgcccg
    13621 cggctcttgc aaaatgaggg tgcttcgtca tattctataa ataagggaat gcctgaaaag
    13681 cgcatcactg ccgttcagac ggcatccgac cagctgtctc tgcctgaagg caaaatgccg
    13741 tctgaaaaga cggagaaccg acccgtcggc ggcagtatct tggacaggat gggtttcgac
    13801 ccagttcatc ccgacgtgct tgccggacag ttggctatgc ctgccgcaga tttgtatgcc
    13861 gcactgttgg aattggaatt ggacggcagc gttgccgcaa tgcccggcgg cagataccag
    13921 cgtatccgaa cttgaacgca ctttatatta aggaacacga atgaccgaag tcatcgccta
    13981 cctcatcgaa catttccaag atttcgatac ctgtccgccg cccgaagact tgggtatgct
    14041 gcttgaagaa gcgggtttcg atacgatgga aatcggcaac accctgatga tgatggaagt
    14101 attgctcaac agctccgaat tttccgccga acccgccgac agcggcgcat tgcgcgtgta
    14161 cagcaaagaa gaaaccgaca acctgccgca ggaagtgatg gggctgatgc agtatctgat
    14221 tgaagaaaaa gccgtcagct gcgaacagcg ggaaatcatc atccacgcgc tcatgcacat
    14281 tccgggcgac gaaattaccg tagataccgc caaagtgctg accctgctgc ttttatgggc
    14341 aaacaagagc gagctgcccg tgttggtcgg cgacgagctg atgagcgcgc ttttactcga
    14401 caacaaaccc acgatgaact gaagcggctt cagacggccc gcccgaggcc gtctgaaacg
    14461 ccggcatcaa aaccaccatc cagagaacga caaatggcga aaaacctatt aatcgtcgaa
    14521 tccccgtcca aagccaaaac cctgaaaaaa tatttgggcg gcgattttga aatccttgca
    14581 tcctacggac acgtccgcga cctcgtcccc aaaagcggcg cggtcgatcc cgacaacggc
    14641 tttgcgatga aataccaact catcagccgc aacggcaaac acgtcgatgc catcgtcgcc
    14701 ggtgccaaag aagctgaaaa catctacctc gccaccgacc cggataggga aggcgaagcc
    14761 atttcctggc atcttttgga aatcctcaaa tccaaacgcg gcttgaaaaa catcaagccg
    14821 cagcgtgtcg tgttccacga aatcaccaaa aacgccgtgc tcgatgccgt tgcccatccg
    14881 cgcgaaatcg aaatggactt ggtcgatgcg caacaagccc gccgtgcttt ggactatttg
    14941 gtcggcttta acctttcgcc attgttatgg aaaaaaatcc gccgaggttt gagcgcgggg
    15001 cgtgtgcaaa gccctgcttt gcgcctgatt tgtgagcgcg aaaacgagat ccgcgcgttt
    15061 gaagcgcagg aatattggac ggtacatctt gacagtcaca aaggacgcag caagttcacc
    15121 gccaaactcg cccaatacaa cggcgcgaaa ctcgaacaat tcgacctgcc gaacgaagcc
    15181 gcgcaagccg acgtgttgaa agaactcgaa ggcaaagagg ccgtcgttac cgccattgaa
    15241 aagaaaaagc gcagccgcaa tcctgccgcg ccgttcacca cttctaccat gcagcaggat
    15301 gccgtgcgca aactcggctt caccaccgac cgcaccatgc gtaccgccca acagctttat
    15361 gaaggtatag acgtagggca gggcgcgatc ggtctgatta cctatatgcg tactgacagc
    15421 gtgaatttgg cggatgaagc gttaaccgaa atccgccatt acatcgaaaa caaaatcggc
    15481 aaagaatatc tgccgagtgc cgccaaacaa tacaaaacca aatccaaaaa cgcccaagaa
    15541 gcgcacgaag ccatccgtcc gacttccgtg taccgcacgc ccgaaagcgt caaacccttc
    15601 ctgagcgcag accagttcaa actctatcaa atgatttggc agcgtaccgt cgcctgtcag
    15661 atgacgcctg ccaaattcga ccaaaccacc gtcgatatta ccgtcggcaa aggcgtattc
    15721 cgcgtaaccg gacaagtgca aaccttcgca ggcttcttga gcgtttatga agaaagcagc
    15781 gacgatgaag aaggcgaaga cagcaaaaaa ctgcccgaaa tgagcgaagg cgataaattg
    15841 cccgtggaca aactctacgg cgaacaacac tttaccactc cgccgccacg ctacaacgaa
    15901 gccacgctgg ttaaagccct cgaagaatac ggcatcggcc gcccctcgac ctacgccagc
    15961 atcatctcca cgctcaaaga ccgcgaatac gttacccttg agcaaaaacg cttcatgccc
    16021 accgacacag gcgacatcgt caacaaattc ctgaccgaac acttcgccca atacgtcgat
    16081 taccacttta ccgccaaact cgaagaccag cttgacgaaa tcgccggcgg caaacgccaa
    16141 tggattccct tgatggacaa attctggaaa ccgttcatca aacaagtgga agaaaaagaa
    16201 ggcatcgaac gcgccaaatt taccacgcag gaacttgatg aaacctgccc gaaatgcggc
    16261 gaacacaaac tgcaaatcaa gttcggcaaa atgggccgtt tcgttgcgtg tgccggctat
    16321 cccgagtgca gctacacgcg caatgtcaat gaaaccgccg aagaagccgc agagcgcatc
    16381 gccaaagccg aagccgaaca ggcagaactc gacggacgcg aatgtcctaa atgtggtgga
    16441 cggctggtgt acaaatacag ccgtaccggc agtaaattca tcggttgcgc caactacccc
    16501 aaatgcaaac acgtcgagcc gctggaaaaa ccgaaagata ccggcgtcca gtgtccgcaa
    16561 tgtaaaaaag gcaacctcgt cgagcgtaaa tcccgctacg gcaaactgtt ttacagttgc
    16621 agcacctatc ccgactgtaa ctacgccaca tggaacccac ccgttgcaga aagctgtcca
    16681 aaatgcgcat ggccggtttt gaccatcaaa accaccaaac gctggggtgt agaaaaagtc
    16741 tgcccacaaa aagaatgcgg ctggaaagaa cagattgaac cgcccgcgcc gaaggagtaa
    16801 gattaggttg gtttgaaaga gaaaaggtcg tctgaaaaat tttcagacga cctttgcttt
    16861 tctgtgattg gtttatttga atccgcgtgt tgttttaaag tccgataaaa tccggttcat
    16921 ttcaggcgca aacaaggcga tgtaatcgta agatagaccg cgactggcac tgggatgggg
    16981 aaagcagacg acttcgcaat cttcaaacga ttggaatttg acattgaaac gtgtaccgtc
    17041 aaattctttt tgcaccgtct ccagcggttt ggtctgctta ccgaccaact gctcgaagcg
    17101 tggcagtaca ttttggttgt tcagaaaatc cgccaacctg ctgcccatga agaggatgac
    17161 tttcggacgc agtttttcga tgtggtagag aaaattatcg atgtgctcgg gttgtgtgaa
    17221 cttgtctgga ttgtcgatag tgttgccctg tgtagcagcc cagttggttt gaaccaggga
    17281 tttttcaaat gcaccgccca atccattttc gtctaagggg tgtccccaca tttcaaacca
    17341 attttttatc gtattatcgt aacgccactt ttttgcctgc tctccgaaat agagggattt
    17401 gtttgcaaat gtatggtcga ttttgttttc agggagtttg tattcacctg ctacataagc
    17461 agcctcatcg gctttactcc aaccccattc atagccacaa atcattaagc catgtttgtc
    17521 gttgtagcct ttgaacaggc tgttgctcaa attcaaatcc ttcatcatga actcttcctt
    17581 ttaaaattta agagcgattg acttcaatgt ttttagatgg ggtggaaaaa tccttgtgta
    17641 ggcaacataa attcaataaa tttcttgata attcgaaacc tactaatagc gcacctataa
    17701 aagctttttc attacgttca gcatgacggt cacgtcgttc atatttttta cgcttgctgt
    17761 tccctgttat tacagctaag ccaagtgata tggcgagaat tgcccaaaca atagtactta
    17821 aataacaatt ttccccatac tatcaataag gaaagaaaaa accttttagt attaggtcga
    17881 tagattataa tccatgccca tgaaaatgca ataagagtta tacataagat acaagctgac
    17941 aggatttctt tatttttaat taaataactt agagcgatga ggatgacagg tgtcaagaaa
    18001 ataatagtta catcccgata gctataaaag aaaactgccc tattttgaat gtggagatgt
    18061 gcacagaatc caatatagct aaggataata gttaatataa taaaaaaaga ccaccaaggg
    18121 tgaagagata ggaattccat gttttccctt tttttgtaaa a
//
LOCUS       DAXIFD010000018        18132 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.018, whole genome shotgun sequence.
ACCESSION   DAXIFD010000018 DAXIFD010000000
VERSION     DAXIFD010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18132
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.018"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(109..1152)
                     /gene="argC"
                     /locus_tag="ACFOCN_000488"
     CDS             complement(109..1152)
                     /gene="argC"
                     /locus_tag="ACFOCN_000488"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HFC6969694.1"
                     /translation="MSKKIKVGIVGATGYTGVELLRLLAAHPDVEVAAVTSRSEAGTA
                     VADYFPSLRGVYGLAFQTPDEAGLEQCDIVFFATPNGIAMKDAPRLIEQGVRVIDLSA
                     DFRIWDIPTWEHWYGMPHAAPGLVSQAVYGLSELNREAVAQARLVANPGCYPTCVSLP
                     LVPLLRQCRLKPGMPLIADCKSGVSGAGRKGNVGSLLCEVGDNFKAYGIAGHRHLPEI
                     RQTIAGLQDGIAEGFVFTPHLAPMIRGMHATVYLHLSDGICPETILRDYYRDSLFVDI
                     LPAGSTPETRSVRGANLCRISIQQAAQSDVWVVLSVIDNLVKGAAGQAVQNMNIMFGL
                     KETHGLGAIPLLP"
     gene            complement(1149..1430)
                     /locus_tag="ACFOCN_000489"
     CDS             complement(1149..1430)
                     /locus_tag="ACFOCN_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969695.1"
                     /translation="MKTLVLLLLSFSTTTAFAAYGLGLGQAPKYPAGFRAYGYVYSGR
                     QGWVLKTEADAIKLDTLFKRFVYRPSAANQNPVGQRSDGIPANHTKEKP"
     gene            1684..2839
                     /locus_tag="ACFOCN_000490"
                     /pseudo
     CDS             1684..2839
                     /locus_tag="ACFOCN_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704893.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
     gene            2848..3075
                     /locus_tag="ACFOCN_000491"
     CDS             2848..3075
                     /locus_tag="ACFOCN_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969696.1"
                     /translation="MKNWKQFTFFVILVIACYQVLYFLSDMFLLDYINKYSWNLNFIQ
                     GTLNFFSIYLPYVFVSRIFRNTNQEKEYKND"
     gene            3068..3421
                     /locus_tag="ACFOCN_000492"
     CDS             3068..3421
                     /locus_tag="ACFOCN_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969697.1"
                     /translation="MIELQLHELKLVSGGGPVTDNIAGNVANAATTKGGPTWGDLVAI
                     PAAAAAVYYLPKNAYGAAGANGVYNVTRDWVNDAVNAPPYNGRPIFEIEHGLTAPATK
                     ADKSGNGYTDGTDYC"
     gene            3482..4108
                     /locus_tag="ACFOCN_000493"
     CDS             3482..4108
                     /locus_tag="ACFOCN_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein"
                     /protein_id="HFC6969698.1"
                     /translation="MNRPKQPFFRPEVAVARQTSLTGKVILTRPLSFSLWTTFASISA
                     LLIILFLIFGNYTRKTTAEGQILPASGVIRVYAPDTGTITAKFVEDGEKVKAGDKLFA
                     LSTSRFGAGGSVQQQLKTEAVLKKTLAEQELGRLKLIHGNETRSLKATVERLENQKLH
                     ISQQIDGQKRRIRLAEDQWQKRHWADRNCRDWAWYPPIWRRATNLFIS"
     gene            4012..4260
                     /locus_tag="ACFOCN_000494"
                     /pseudo
     CDS             4012..4260
                     /locus_tag="ACFOCN_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237325.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFP transporter"
     gene            4569..4871
                     /locus_tag="ACFOCN_000495"
     CDS             4569..4871
                     /locus_tag="ACFOCN_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969699.1"
                     /translation="MTWVGGSGNAQQSSYYCEICESAGLNDTGNPDKSLGLPNNTFSN
                     PPGWGATIGALAGSRIGMPEFGTFASHAIENFDWSWYRRYREIAETIEREYSGGLP"
     gene            5155..5307
                     /locus_tag="ACFOCN_000496"
                     /pseudo
     CDS             5155..5307
                     /locus_tag="ACFOCN_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009117473.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine peptidase family C39 domain-containing
                     protein"
     gene            5445..7174
                     /gene="hrpB"
                     /locus_tag="ACFOCN_000497"
                     /pseudo
     CDS             5445..7174
                     /gene="hrpB"
                     /locus_tag="ACFOCN_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion system transporter HrpB"
     gene            7283..13414
                     /locus_tag="ACFOCN_000498"
     CDS             7283..13414
                     /locus_tag="ACFOCN_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6969700.1"
                     /translation="MNKGLHRIIFSKKHSTMVAVAETANSQGKGKQAGSSVSVSLKTS
                     GDLCGKLKTTLKTLVCSLVSLSMVLPAHAQITTDKSAPKNQQVVILKTNTGAPLVNIQ
                     TPNGRGLSHNRYTQFDVDAKGAVLNNDRNNNPFLAKGSAQLILNEVRGAASKLNGIVT
                     VGGQKADVIIANPNGITVNGGGFKNVGRGILTTGAPQIGKDGALTGFDVRQGTLTVGA
                     AGWNDKGGADYTGVLARAVALQGKLQGKNLAVSTGPQKVDYASGEISAGTAAGTKPTI
                     ALDTTALGGMYADSITLIANEKGVGVKNAGTLEAAKQLIVTSSGRIENSGRIATTADG
                     TEASPTYLSIETTEKGAAGTFISNGGRIESKGLLVIETGEDISLRNGAVVQNNGSRPA
                     TTVLNAGHNLVIESKTNVNNAKGSANLSAGGRTTINDATIQAGSSVYSSTKGDTELGE
                     NTRIIAENVTVLSNGSIGSAAVIEAKDTAHIESGKPLSLETSTVASNIRLNNGNIKGG
                     KQVVLMADGDIQAKASNLNASGNLYIHAGKDLDLNADKDLSTQSISLRADNTALISSN
                     GNTLTAEKNLDIQAGSLSVRQSNLQSSGGNVQMSATKGNISLNQSWINASQNIDTAAL
                     QGNIISDGLTAVAEVGRVSLLANGNVDFNGLNTLIAEGDINAGSVGKGRLKMDNTDIY
                     ASAGDVKLVAGGQLDLGNGTVNGGHISLDSNKGSMVVQDVHLNARASLKVDADQTLTI
                     NNSKLNSGHNTQINTNHGHMTLNQLDAHSRRHMSISAQGKGKGKDSGQILQNDQQNSK
                     STLAADGVLSLNSSALQVLDNTTLRGGAINIKAGGGIIKRGYIDWETQDTATMRSAEL
                     KPLSGMMSIESGGDNPLTVEPGNRIVSAGDLAVNHNGTFQISARAGNNGNPSAQTASV
                     SAKGNIGIVAGEVDIDAANIAAGKDLALVATKGNISLNSIRNTFSNYQLKTDKHNITQ
                     QLTDVEQELSKLTSDPKYRKAQDLPQMLRRKYKRRDKVFGDSEARLRGLRAEINAADE
                     AWAELQSPVKALLERKQLLQQALLTVSQPGSGHENQGSTLSGQNIKLLAAGGIRIQGS
                     KVAATQQANIQAAGFLPAPAAEELQEGRLQSAIDISGVFDTFEYGQQGSDKYGYAIFS
                     RPSEISGKTGVTLSAPNANENSRISLSAANIEAENGKIKLQSYGDQSYYAGQGELYTL
                     ERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQGIDIKSGGNIDAYATAFDAPKG
                     SINIEAGRKLTLYAVEELNYDKLDSQKRRRFLGISYSKAHDTTTQVMKTALPSRVVAE
                     SANLQSGWDTKLQGTQFETTLGGATIRAGVGEQARADAKIILEGIKSSIHTETVSSSK
                     STLWQKQAGRGSNIETLQLPSFTGPVAPVLSAPGGYIVDIPKGNLKTEIEKLAKQPEY
                     AYLKQLQTAKNVDWKQVQLAYDKWDYKQEGLTGAGAAIVVIIVTALTYGYGAAAAGSV
                     TAAGSSTAAAATTTAAATTTVSTAAAMQTAALASLYSQAAVAIINNKGDVGKALKDLG
                     TSDTVKQIVTSALTAGALNQMGADIAQLNSKVRTELFSSTGNQTIANLGGRLATNLSN
                     AGISAGINTAVNGGSLKDNLGNAALGALVNSFQGEAASKIKTTFSDDYVAKQFAHALA
                     GCVSGLVQGKCKDGAIGAAVGEIVAESILGGRNPATLSDAEKHKVISYSKIIAGSVAA
                     LNGGDVNTAANAAEVAVVNNALNFDSTPTNAKKHQPQKPDKTALEKIIQSIMPAHAAG
                     AMTNPQDKDAAIWISNIRNGITGPIVITSYGVYAAGWTAPLIGTAGKAAISTCMANPS
                     GCTVMVTQAAEAGAGIATGAVTVGNAWEAPVGALSKAKAAKQAAPKETINNLANLAKA
                     EQQILFRIAQRDTQLDAWKTGFNNRVRKGAGLLDASNIPITINGKTIKPVQAISLKGA
                     PVYSGVSEQEIFALYRQMTGQNPNFRVLPDGRLANGIISTGEWAGTKIALRNFSKTEN
                     STQARWTLDLQNPPSFIKGTKLELKFQ"
     gene            13433..13807
                     /locus_tag="ACFOCN_000499"
     CDS             13433..13807
                     /locus_tag="ACFOCN_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6969701.1"
                     /translation="MDEKQKIKILDFQIDLSSIFNSYKNQMGINIQDKNLKNNFCSFM
                     EELLNDGSIRLHDYTDGIGIPLTGTSKEQVQKLKDIWPTLEDAQAIWPEDPWYYLEWL
                     WWDIACPIDLADLPNIDIYEQA"
     gene            14192..15622
                     /locus_tag="ACFOCN_000500"
                     /pseudo
     CDS             14192..15622
                     /locus_tag="ACFOCN_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224022.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
     gene            15641..15904
                     /locus_tag="ACFOCN_000501"
     CDS             15641..15904
                     /locus_tag="ACFOCN_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969702.1"
                     /translation="MDKEIKICPRCEQGYLYHAKPKYFSGEVILCDECYAMWLGDMKI
                     FYGQYGKDFYDYHEFMKDKGIEEINMWEGELFDHPYYEDEKFK"
     gene            16011..18132
                     /locus_tag="ACFOCN_000502"
                     /pseudo
     CDS             16011..18132
                     /locus_tag="ACFOCN_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249609.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
BASE COUNT         5296 a         4083 c         4467 g         4286 t
ORIGIN      
        1 tttcgtggga atggatgggc ccaaagccgt ccgaaccaaa aaaaaccgcc gctttcagac
       61 ggcatcaaaa aaccgcaggc acgatgcctg cggtttgccg tttgcgcttc aggggagcag
      121 ggggattgcg cccaagccgt gtgtttcttt cagtccgaac atgatgttca tattttgcac
      181 cgcctgaccc gccgcgcctt tgacgaggtt gtcgatgacg gaaaggacga cccacacatc
      241 ggattgcgcc gcctgttgga tgctgatgcg gcagaggttt gcgccgcgca cgctgcgggt
      301 ttctggtgtc gaaccggcgg gcaggatgtc cacgaacagg ctgtcgcggt aatagtcgcg
      361 caggatggtt tcggggcaga tgccgtctga aaggtggagg taaacggtgg cgtgcatacc
      421 gcgtatcatc ggcgcgaggt gcggcgtgaa cacgaatcct tcggcgatgc cgtcctgaag
      481 cccggcgatg gtctgcctga tttcgggcag gtggcggtgt ccggctatgc cgtaggcttt
      541 gaagttgtcg ccgacttcgc acaacagcga accgacattg cctttcctgc ccgcgccgga
      601 cacgccggat ttgcagtcgg caatcagcgg cataccgggc ttcagacggc attgccgcaa
      661 cagcggcacg agcggcaggg atacgcaggt cgggtagcag ccggggttgg cgacgaggcg
      721 cgcctgtgcg acggcttcgc ggttgagttc gctcaatccg tacacggctt gggaaacgag
      781 gccgggggcg gcgtggggca tgccgtacca gtgttcccag gtcggaatgt cccatatgcg
      841 gaagtcggcg gaaaggtcga tgacgcgcac gccctgttca atcaggcgcg gcgcgtcttt
      901 catggcgatg ccgttgggcg tggcgaagaa gacgatgtcg cattgttcca aacctgcctc
      961 gtcgggcgtt tggaaggcga ggccgtacac gccgcgcaaa ctcggaaagt aatcggcaac
     1021 tgcggttccc gcttcgctgc ggctggttac ggcggcgact tcgacatcgg gatgggcggc
     1081 aagcaggcgc agcagttcca cgccggtgta gcccgtcgcg ccgacaatgc cgactttgat
     1141 ttttttactc atggtttttc ctttgtgtgg ttggcgggta tgccgtccga acgctgtccg
     1201 acggggtttt gattggcggc ggaaggacgg tacacaaagc gtttgaaaag cgtgtctaat
     1261 ttaatggcat ccgcctctgt ttttaaaacc cagccctgcc gtccggaata aacataaccg
     1321 taggcgcgaa agccggcagg atatttcggt gcctgcccca aacccaaacc gtatgcggcg
     1381 aaagcggtgg tcgtggagaa ggaaagcagg aggaggacga gggttttcat aaggttccaa
     1441 accgaacggg gcgatgaagc ccgattatag caaaaggtcg tctgaaaacc gttttcagac
     1501 gaccttttat ttaattacaa taaaaatgtt aacaacaaaa aacaaaccgc ttttttccgt
     1561 ttggagacaa atttttaact aaaattgtca acaattcctt gacgcacaca caaaaaaaac
     1621 tttaatattt gtaaatatat gtaacattat aaattttaaa tattttctga gtaaggggaa
     1681 gtaatgagca tccatctcga cttcggcatt agtcctaaaa cgttccgaca gacttaatct
     1741 gtatcaaaag cccaagctct ttaaaggagc ggttcggaat ctcgaagccg catcttggaa
     1801 agatatcaac gagatatacc aacgagcaga cccaaccgca ccgctgtttt atctgcgtaa
     1861 aaaaggtgca attgttccta aagaagaata cgtcgaaagt ttcgacgctt tgggcaaaac
     1921 tcgctaccgt tttattaaat ccgttatcta cgaacatatg aagaatggtg cgtcgttagt
     1981 ctataaccat attaacaacg agccgttttc agatcatatt tcccgtcaag tcgcccgcct
     2041 tgccggcgca catactattg ttagtgggta tcttgctttt ggcagcgacg aatcttataa
     2101 aaaccattgg gacacccgcg atgtgtatgc catccagctt ttcggcaaga aacgttggca
     2161 acttactgcc cctgatttcc ctatgccatt gtatatgcaa cagactaaag atactgatat
     2221 ttccattcct gaacatatcg atatggatat tatccttgaa gcaggtgatg tcctctacat
     2281 cccgcgcggt tggtggcaca gacctatccc gctcggctgt gaaaccttcc acctcgctgt
     2341 cggtaccttt ccgcccaacg gctataatta cctcgagtgg ctaatgaaga aattccccac
     2401 catagaaagt ctgcgccaca gtttctcaga ctgggagcaa gataggacgc gtatcaacga
     2461 tactgccgca caaattgctg ccatgattgc cgaccccgtc aattatgaag ccttcagtga
     2521 agactttctc ggcaaagaac gtaccgatac cgcttttcat ctcgaacagt tcgcgaatcc
     2581 caacgctact ccgctttcag acgacgtcag gttgagatta aatgccaata atttggatac
     2641 gttggaaaag ggatatttga ttgggaatgg gatgaagata agcgtagatg agttggggaa
     2701 aaaagtttta gaacacatcg gtaagaatga accgttattg ttgaaaaatc tactggttaa
     2761 cttcaatcag ggaaaatatg aagaagttag gaagttgatt tatcagttga tagagttaga
     2821 ttttctggaa attttgtgag ggattctatg aaaaactgga agcaatttac atttttcgta
     2881 atattagtaa tagcttgtta tcaagtgcta tattttttat cagatatgtt tcttctcgac
     2941 tacattaaca aatatagttg gaatttgaat tttattcagg gtactttgaa ttttttttca
     3001 atatatctgc catatgtttt tgttagccga atttttagga ataccaacca agaaaaggag
     3061 tataaaaatg attgaacttc aacttcatga attgaagctg gtttcagggg gaggtcctgt
     3121 aacagacaat atagctggaa atgtagctaa tgctgccaca accaaaggag gtcccacatg
     3181 gggggatttg gttgcaatac ctgctgccgc agcggcagtt tattatctgc cgaaaaatgc
     3241 ttacggtgct gctggtgcaa atggtgtata caatgtgact cgtgattggg taaatgatgc
     3301 cgttaatgca cctccttata acggaagacc aatctttgag attgaacatg gattaactgc
     3361 tcccgcaaca aaagcagata aatcaggaaa cggctacact gacggtacag attactgctg
     3421 atatttctca ttgttcagac gatctctagg ggtcgtctga aactttctta acttcaattt
     3481 tatgaataga cccaagcaac ccttcttccg tcccgaagtc gccgttgccc gccaaaccag
     3541 cctgacgggt aaagtgattc tgacacgacc gttgtcattt tccctatgga cgacatttgc
     3601 atcgatatct gcgttattga ttatcctgtt tttgatattt ggtaactata cgcgaaagac
     3661 aacagcggag ggacaaattt tacctgcatc aggcgtaatc agggtgtatg caccggatac
     3721 ggggacaatt acagcgaaat tcgtggaaga tggagaaaag gttaaggctg gcgacaagct
     3781 atttgcgctt tcgacctcac gtttcggcgc aggaggtagc gtgcagcagc agttgaaaac
     3841 ggaggcagtt ttgaagaaaa cgttggcaga acaggaactg ggtcgtctga agctgataca
     3901 cgggaatgaa acgcgcagcc ttaaagcaac tgtcgaacgt ttggaaaacc agaaactcca
     3961 tatttcgcaa cagatagacg gtcagaaaag gcgcattaga cttgcggaag atcagtggca
     4021 aaaacggcac tgggcagaca ggaattgtcg ggattgggca tggtatcctc cgatttggcg
     4081 aagagcaacg aacctgttta tctcgtgaaa ataaaacccg acaaaccaac catcactgca
     4141 tacggtgagg aaaaaccgct gcaaatcggc atgacgttgg aagcagacat cctgcacgag
     4201 aaacggcggc tgtacgaatg ggtattggag ctgatttata gtatgtcggg caaactgtaa
     4261 gacttgaggc tgaaagataa agaagttgtc tgaaaccttt tcagacgacc agaagacaat
     4321 aaaaaacaca aacttcaaaa ctgcctgaaa ccatcccctt ttacaggcac tccgtttgta
     4381 aaagcaagga tagggcatct gcccttttga ttgtttgatt aacgatacaa ggagtttcaa
     4441 aatgagagtt ttatagtgga ttaacaaaaa ccagtacagc gttgcctcgc cttgccgtac
     4501 catttgtact gtctgcggct tcgtcgcctt gtcctgattt ttgttaatcc actatatgtg
     4561 ttcatgaaat gacttgggtc ggaggctcag gtaatgcgca acaaagctca tattattgcg
     4621 aaatttgcga atctgcaggg cttaacgata cgggaaatcc tgataaatct ttaggattgc
     4681 caaacaatac gttcagtaat ccgcctggtt ggggagctac aatcggagct ttagcaggta
     4741 gccgcatagg gatgcctgaa tttggtacgt ttgcgagcca tgccattgaa aatttcgact
     4801 ggtcatggta tcgacgttat agggaaattg ccgaaacgat tgaacgagaa tattcaggcg
     4861 gtttgcctta atagttgagg aggtcatgat gtttgccaaa cattatcaat tcatcgcact
     4921 cggcatcatg ctgcttcttt atatgttgat tctctatacg accgattttt ccaatctgac
     4981 gtattggatg ctgtttttta tctgttttat tacaggaaaa atattagctc gtttgttaga
     5041 gaaaagcttt aaataaaata gcagctagtc gcaaaaggtc gtctgaaacc ttttcaggcg
     5101 gcctttctaa aatacatcca acttcctaat ccctattttt caaaaaggaa atctatgccc
     5161 catctgcaaa acctgtcttt gggcttaaag aaaaagctgc ctgttatcct gcaaacagaa
     5221 atatcagaat gcggcttggc atgtctggcg gctgtggcgg gatttcatgg tttccatacg
     5281 aatttacgcg cactgcgttc aaaatactgt ccgagacctt tgcaaaattc cccaaaatcc
     5341 cctaaatgtc ttggtgggaa ttttgcaaag gtctcattct ataactgtaa atacttttaa
     5401 atttatgaca aaatagtaaa tattgctaaa ataatattga tgtcatgaaa ttttttcctg
     5461 ctccatgtct gttggttatc ctggctgtca taccccttaa aaccttagct gccgatgaaa
     5521 acgatgcaga acttatccgt tccatgcagc gtcagcagca catagatgct gaattgttaa
     5581 ctgatgcaaa tgtccgtttc gagcaaccat tggagaagaa caattatgtc ctgagtgaag
     5641 atgaaacacc gtgtactcgg gtaaattaca ttagtttaga tgataagacg gcgcgcaaat
     5701 tttcttttct tccttctgtg ctcatgaaag aaacagcttt taaaactggg atgtgtttag
     5761 gttccaataa tttgagcagg ctacaaaaag ctgcgcaaca gatactgatc gtgcgtggct
     5821 acctattatc caaccacaga atatggattc gggaattctg aaattacggg tatcagcagg
     5881 cgaaataggg gatatccgct atgaagaaaa acgggatggg aagtctgccg aaggcagtat
     5941 tagtacattc aataacaaat ttcccttata taggaacaaa attctcaatc ttcgcgatgt
     6001 agagcagggc ttggaaaacc tgcgtcgttt gtcgagtgtt aaaacagata ttcagattat
     6061 accgtccgaa gaagaaggca aaagcgattt acagatcaaa tggcagcaga ataaacccat
     6121 acggttcagt atcggtatag atgatgcggg cggcaaaacg accggcaaat atcaaggaaa
     6181 tgtcgcttta tcgttcgata accctttggg cttaagcgat ttgttttatg tttcatatgg
     6241 acgcggtttg gcgcacaaaa cggacttgac tgatgccacc ggtacggaaa ctgcaagcgg
     6301 atccagaagt tacagcgtgc attattcggt gcccgtaaaa aaatggctgt tttcttttaa
     6361 tcacaatgga catcgttacc acgaagcaac cgaaggctat tccgtcaatt acgattacaa
     6421 cggcaaacaa tatcagagca gcctggccgc cgagcgcatg ctttggcgta acagacttca
     6481 taaaacttca gtcggaatga aattatggac acgccaaacc tataaataca tcgacgatgc
     6541 cgaaatcgaa gtgcaacgcc gccgctctgc aggctgggaa gccgaattgc gccaccgtgc
     6601 ttacctcaac cgttggcagc ttgacggcaa gttgtcttac aaacgcggga ccggcatgcg
     6661 ccaaagtatg cctgcaccgg aagaaaacgg cggcgatatt cttccaggta catctcgtat
     6721 gaaaatcatt actgccggtt tggacgcagc cgccccattt attttaggca aacagcagtt
     6781 tttctacgca accgccattc aagctcaatg gaacaaaacg ccgttggttg cccaagataa
     6841 attgtcaatc ggcagccgct acaccgttcg cggatttgat ggggagcaga gtcttttcgg
     6901 agagcgaggt ttctactggc agaatacttt aacttggtat tttcatccga accatcagtt
     6961 ctatctcggt gcggactatg gccgcgtatc tggcgaaagt gcacaatatg tatcgggcac
     7021 gcagctgatg ggtgcagtgg tcggcttcag aggagggcat aaagtaggcg gtatgtttgc
     7081 ttatgatctg tttgccggca agccgcttca taaacccaaa ggctttcaga cgaccaacac
     7141 cgtttacggc ttcaacttga attacagttt ctaacctctg aattttttac tgatatttag
     7201 acggtctttc cttatcctca gaccgtcaaa ctttacctac gtacttggcg cgcagtacgt
     7261 tcatcttcaa aatggaatag acatgaataa aggtttacat cgcattatct ttagtaaaaa
     7321 gcacagcacc atggttgcag tagccgaaac tgccaacagc cagggcaaag gtaaacaggc
     7381 aggcagttcg gtttctgttt cactgaaaac ttcaggcgac ctttgcggca aactcaaaac
     7441 cacccttaaa accttggtct gctctttggt ttccctgagt atggtattgc ctgcccatgc
     7501 ccaaattacc accgacaaat cagcacctaa aaaccagcag gtcgttatcc ttaaaaccaa
     7561 cactggtgcc cccttggtga atatccaaac tccgaatgga cgcggattga gccacaaccg
     7621 ctatacgcag tttgatgtcg acgctaaagg tgctgtactg aacaacgatc gcaacaacaa
     7681 cccgtttctg gccaaaggca gtgcgcagtt gattttgaac gaggtgcgcg gtgcggccag
     7741 caaactcaat ggcatcgtta ccgtaggtgg tcaaaaggcc gatgtgatta tcgccaaccc
     7801 caacggcatt accgtgaacg gcggcggctt taaaaacgtc ggccgcggta tcttaactac
     7861 cggtgcgccc caaatcggca aagacggtgc actgacagga tttgatgtgc gtcaaggcac
     7921 attgaccgta ggagcagcag gttggaatga taaaggcgga gccgactaca ccggggtact
     7981 tgctcgtgca gttgctttgc aggggaaatt acagggtaaa aacctggcgg tttctaccgg
     8041 tcctcagaaa gtagattacg ccagcggcga aatcagtgca ggtacggcag cgggtacgaa
     8101 accgactatt gcccttgata ctaccgcact gggcggtatg tacgcagaca gcatcacact
     8161 gattgccaat gaaaaaggcg taggcgtcaa aaatgccggc acactcgaag cggccaagca
     8221 attgattgtg acttcgtcag gccgcattga aaacagcggc cgcatcgcca ccactgccga
     8281 cggcaccgaa gcttcaccga cttatctctc catcgaaacc accgaaaaag gagcggcagg
     8341 cacatttatc tccaatggtg gtcggatcga gagcaaaggc ttattggtta ttgagacggg
     8401 agaagatatc agcttgcgta acggagccgt ggtgcagaat aacggcagtc gcccagctac
     8461 cacggtatta aatgctggtc ataatttggt gattgagagt aaaactaatg tgaacaatgc
     8521 caaaggctcg gctaatctgt cggccggcgg tcgtactacg atcaatgatg ctactattca
     8581 agcgggcagt tccgtgtaca gctccaccaa aggcgatact gaattgggtg aaaatacccg
     8641 tattattgct gaaaacgtaa ccgtattgtc caacggcagt attggcagtg ctgctgtaat
     8701 tgaggctaaa gacactgcac acattgaatc gggcaaaccg ctttctttag aaacctcgac
     8761 cgttgcctcc aacatccgtt tgaacaacgg taacattaaa ggcggaaagc aggtggtact
     8821 gatggctgat ggcgacattc aggcaaaagc ctccaatctg aatgcatccg gcaatctgta
     8881 tattcatgca ggtaaggatc tggatttgaa tgccgataaa gacttatcaa cacaaagtat
     8941 cagcctgagg gcagacaaca ccgccctcat cagtagcaac ggtaacacct tgactgcaga
     9001 aaagaatctg gatattcagg caggtagctt gagtgtgcgt caaagtaatc tgcaatccag
     9061 tggcggtaat gtgcagatga gcgcgactaa aggcaacatc agcttgaatc agagttggat
     9121 aaatgccagt cagaatattg atacggcagc acttcaaggc aatattattt cagacggtct
     9181 gactgctgtt gccgaagttg gacgcgtatc tcttcttgcc aacggcaatg ttgatttcaa
     9241 cggtctaaat accttgattg cggaaggaga cattaatgct ggttcagtcg gtaaaggccg
     9301 tctgaaaatg gacaataccg atatttatgc ttctgcaggc gatgtgaaac tggttgccgg
     9361 aggtcaatta gatttaggca acggcaccgt taacggcggt catatcagct tagacagcaa
     9421 taaaggcagc atggtggtgc aggatgtaca cctgaatgcc cgcgcatcac tgaaagtgga
     9481 tgcggatcaa actttaacca ttaataacag caagctcaat tccggtcaca atacccagat
     9541 taatacaaat catggtcata tgacgcttaa tcagcttgat gctcattcac gtcgtcatat
     9601 gagtatcagt gcacagggta aaggcaaagg aaaagacagc ggtcaaattt tacaaaacga
     9661 ccagcaaaac agtaaaagta ctttggcggc agatggtgta ttgtcattga acagcagcgc
     9721 attacaggtt ttggacaata ctaccctgcg cggtggcgcg ataaacatca aagctggcgg
     9781 aggcatcatc aaacggggct atatcgattg ggaaacccaa gatacggcta ctatgcgttc
     9841 agcggaactg aaaccactgt ctggtatgat gtcgatagaa tcgggcggtg ataacccttt
     9901 aaccgttgaa cccggtaacc gtatcgtttc tgcaggtgat ttggccgtga accacaacgg
     9961 cacattccaa atcagtgcca gagcaggaaa taacggcaat ccgagtgcgc aaacagccag
    10021 cgtttcagct aaaggcaata tcgggattgt ggcgggagag gtggatattg atgcagcaaa
    10081 tattgccgca gggaaagatt tggctttagt ggcaactaaa gggaatattt cactaaacag
    10141 tattaggaat acgtttagta actatcaatt gaaaacagat aaacacaata tcacacagca
    10201 acttactgat gtagagcagg agcttagtaa gttaacgagc gatcctaaat atcgtaaagc
    10261 acaggatctt ccacaaatgt tgaggcgtaa atataagagg cgtgacaaag tattcggtga
    10321 tagtgaggcc agattacgtg gtttacgagc agagataaat gctgctgatg aggcttgggc
    10381 agaactccaa tccccagtaa aagcgttact tgaacgtaaa caattgttac aacaagccct
    10441 tttaacagtt tcccaaccgg gtagtggtca cgaaaaccaa ggtagcaccc ttagcggtca
    10501 aaatatcaaa ctgctcgctg caggtggtat ccgtatccag ggctccaaag ttgctgccac
    10561 ccaacaggca aatatccaag ctgcaggatt tttacctgca ccagccgcag aggaactgca
    10621 agaaggtcga cttcaatcag ccattgacat cagcggtgta tttgatactt ttgaatatgg
    10681 tcagcaaggc agcgataaat acggctatgc cattttcagc aggccatctg aaatttcagg
    10741 aaaaacaggt gttaccctct ctgcaccaaa tgccaatgag aacagccgca tcagtctgag
    10801 tgcggcaaac atcgaagctg aaaacggcaa aatcaaactg caatcctacg gcgaccaatc
    10861 ctattacgcc gggcagggcg aactctatac cttagaacgc cgcagctaca aaaccggcaa
    10921 atggtacaac cgcaaacaca ttaccgaagt caaagaacac aaaaacgcca agcccgacgc
    10981 agtaaacctc agcgcatccc aaggcatcga catcaaatct ggtggcaaca tcgacgccta
    11041 cgccaccgca ttcgatgccc ccaaaggcag cattaacatc gaagccgggc ggaaattgac
    11101 actctatgcc gtagaagagc tcaactacga caaacttgac agccaaaaaa ggcgcagatt
    11161 tctcggcatc agctacagca aagcacacga caccaccacc caagtcatga aaaccgcgct
    11221 gccctcaagg gtagttgcag aatcagccaa cctccaatcg ggctgggata ccaaactgca
    11281 aggcacacag tttgaaacca cactgggtgg cgcaaccata cgcgcaggcg taggcgagca
    11341 ggcacgggca gatgccaaga ttatcctcga agggatcaaa agcagcatcc acacagaaac
    11401 cgtgagcagc agcaaatcta ctctatggca aaaacaggca ggacggggca gtaacatcga
    11461 aaccttgcaa ttgccgagtt tcaccggtcc cgttgcgccc gtactgtccg ctcccggcgg
    11521 ctatatcgtc gacattccga aaggcaatct gaaaaccgaa atcgaaaagc tggccaaaca
    11581 gcccgaatac gcctacctga aacagcttca gacggccaag aacgtcgatt ggaaacaggt
    11641 gcagctggcc tacgacaaat gggactataa acaggaaggc ttgaccggag ccggtgcagc
    11701 gattgtggtg attattgtaa ccgctctaac ttatggatac ggagcggctg cagcgggtag
    11761 cgtaactgcc gcaggaagta gtacagccgc agctgcaaca acgacagcgg cagcaactac
    11821 cactgtttct actgcagctg ccatgcaaac cgcagcttta gcctccttgt atagccaagc
    11881 agctgtagcc atcatcaata ataaaggcga tgtaggcaaa gcattaaaag atctcggcac
    11941 cagtgatacg gtcaagcaga ttgttacttc cgcactgacg gcgggtgcat taaaccagat
    12001 gggagcagat attgcccaat tgaacagcaa ggtaagaacc gaactgttca gcagtacggg
    12061 caatcaaacc attgccaacc ttggaggcag attggccacc aacctcagca atgcaggtat
    12121 ctcagctggt atcaataccg ccgttaacgg cggcagcttg aaagacaact taggcaatgc
    12181 cgcattggga gcattggtta atagcttcca aggggaagcc gccagcaaaa tcaaaacaac
    12241 cttcagcgac gattatgttg ccaaacagtt cgcccacgct ttggcgggtt gtgttagcgg
    12301 actggtacag ggaaaatgta aagatggggc aattggcgca gcagttgggg aaatcgtagc
    12361 tgaatccata cttggcggca gaaaccctgc tacactcagc gatgcagaaa agcataaagt
    12421 tatcagttac tcgaagatta ttgcgggcag cgtggcggca ctcaacggcg gcgatgtgaa
    12481 tactgcggcg aatgcggctg aggtagctgt ggtgaataat gctttgaatt ttgacagcac
    12541 ccctaccaat gcgaaaaagc atcaaccgca gaagcccgac aaaaccgcac tggaaaaaat
    12601 catccaaagt attatgcctg cacatgcggc aggtgcgatg actaatccgc aggataagga
    12661 tgctgccatt tggataagca atatccgtaa tggcatcaca ggcccgattg tgattaccag
    12721 ctatggagtt tatgcagcag gttggacagc tccgctgatc ggtacagctg gtaaagcagc
    12781 tatcagcacc tgtatggcta atccttctgg ttgtactgtc atggttacgc aggctgctga
    12841 agcgggcgcg ggaatcgcca cgggtgcggt aacggtaggc aacgcttggg aagctccagt
    12901 aggagcgttg tcgaaagcga aggcggctaa gcaagctgct cctaaagaaa caataaacaa
    12961 tttggcaaat ttagccaaag cagaacagca gattttattc cgtattgccc aacgcgatac
    13021 gcaactggat gcatggaaga cgggatttaa caatagagta aggaaaggag caggcttgct
    13081 tgatgcaagt aatattccga taaccattaa cggaaaaacc atcaaacctg tacaagccat
    13141 aagcttaaag ggagcacccg tttacagcgg cgtaagcgaa caggagattt ttgcgcttta
    13201 tcggcagatg actggccaga atccgaattt tagagttttg cctgacggaa gattagcaaa
    13261 tggcattatc agtactggag aatgggcagg aacaaaaatt gcattaagaa atttttcaaa
    13321 aacagagaat tcaactcaag cacgatggac attagatttg cagaatcctc catcatttat
    13381 taaaggtact aaattggagc ttaaattcca ataatttaca aaggatttta ccgtggatga
    13441 gaaacaaaaa attaagattc ttgattttca aatcgattta tcctcaattt ttaactctta
    13501 taaaaatcaa atgggtatta atattcaaga taaaaactta aaaaacaatt tctgttcttt
    13561 tatggaagaa ctgttaaatg acggttcaat ccgtttacat gattataccg acggtatcgg
    13621 aattcctcta actggaactt caaaagaaca agtgcagaaa ttgaaagaca tatggcctac
    13681 tttggaagat gcccaagcaa tatggcctga agacccttgg tattacttag aatggctttg
    13741 gtgggatatt gcgtgtccaa tagatttggc cgatttgccg aatattgata tttatgagca
    13801 agcgtaggta tggttagccg cctttagcgg cgtaaccgta cgcatatcag caaactttat
    13861 aaaataacaa ggccgtctga aatctgtttt tcaacttttt cagacggcct tgcaacttgg
    13921 catttcattc gtacggttac gccgctaaag gcggctaacc gtacctacga gctctgataa
    13981 aaatgattta tggaagcaag ctgtagcctg catgaaacct aaaatccatg cgtaaggtgt
    14041 gtgcttcagc gcgcacgcgt tccatgattt acggctcaat gccgtctgaa aagctcaatt
    14101 ttttcagacg gcatttgtta tgcaagtaaa tattcagatt ccctatatac tgcccagatg
    14161 cgtgcgtgct gaagacaccc cctacgcttg ctatttgaaa cagctccaag tcaccaaaga
    14221 cgtcaactgg aaccaggtac aactggcgta cgacaaatgg gactataaac aggaaggctt
    14281 aaccggagcc ggagcagcga ttattgcgct ggctgttacc gtggttactg cgggcgcggg
    14341 agccggagcc gcactgggct taaacggcgc ggccgcagcg gcaaccgatg ccgcattcgc
    14401 ctcgctggcc agccaggctt ccgtatcgct catcaacaat aaaggcgatg tcggtaaaac
    14461 cctgaaggag ctgggcagaa gccgcacagt gaaaaaactg gttgtagcag cggccatcgc
    14521 aggcgtatcc aacaaaatcg gtgcttcctc ccttgccact tggagcgaaa ccccttgggt
    14581 aaacaacctc aacgtcaact tggctaatgc gggcagtgcc gcgctgatta acaccgccgt
    14641 taacggcggc agtctgaaag acaatctgga agcgaatatc cttgcggctt tggtgaatac
    14701 tgcgcatgga gaggcagcaa gtaaaatcaa acaattggat cagcactaca ttgcccataa
    14761 gattgcccat gccatagcgg gctgtgcggc agcggcggcg aataagggca agtgtcagga
    14821 cggcgcgatt ggtgcggtcg tgggggagat tgtcggggag gctttggtta agaataccga
    14881 tttcagcggt atgactgctt ctgaaattga aaaagctaaa gcgaatatta ctgcgtatgc
    14941 aaaattggta gccggagcga ctgtaggtgt tacaggaggc aatgttgatg tggcggcaaa
    15001 tgcttccgaa acagctgtta aaaataatgc attagatatt atttgggata tcggcaacct
    15061 cgtatgggac ggcggtaaat ggatttacgc caaatctatt ggcgataagc agatggctcg
    15121 agaagcggcg attgattttg gtgtggatgc cgccgcagct gccgttccct ttgttccggc
    15181 aggtgcgact aaaatcagcc gaggcggggc ttatgttctg aaggcgggag acgaagcagt
    15241 tgatacggct aaagccatac aggaaattca gaagcagacc ggaatcaagc ttacttatga
    15301 taaggttaat aaggtttgga caacaccggc ggggttagat tatgggttag atgctaagca
    15361 tggtaatagg attaaacatg ttttagccca tacaattcca aatccaaaca aacctgttca
    15421 ttctgttttt aatgtgtccc gtaaagaagt tttgcctttg gttgatgaag cttggagaat
    15481 gaaaggaaat cctttgccaa atgattcatc cgtatatctt gtagatatga agaaacctat
    15541 tggaacaaaa ggagaaacaa aagtgcggat tgttgtgcaa aaaggaacaa ataaaatcat
    15601 ttctgcatat cctcagaaat aattaagaaa ggaatctctt atggataaag aaattaaaat
    15661 ttgcccaaga tgtgagcaag gctaccttta tcatgcaaag cctaaatatt tctctgggga
    15721 ggtcatttta tgcgatgaat gttatgctat gtggcttggg gatatgaaaa ttttttacgg
    15781 acaatatgga aaagattttt atgattatca tgagtttatg aaagataaag gcatagaaga
    15841 aataaatatg tgggaaggag agctttttga tcacccatat tatgaggatg aaaaatttaa
    15901 ataattgatt ttctgttccc cgaatttggg aaatacgatg atattttaaa cccaaatatt
    15961 atttaaagta gcaataggcc gtctgaatat ccgtttttca gacggcctca atgcaactgc
    16021 tggcagccga aggcattcac caacaccaat tgaatgttca gaaaagtacc cgtttcatcg
    16081 gcatcaaagt gggtaaaagc aattacagca aaaacgagct gaacgaaacc aaactgcccg
    16141 tacgcgttat cgcccaaaca gccaaaaccc gttccggctg ggataccgta ctcgaaggca
    16201 ccgaattcaa aaccaccctt tccggagccg acatacaggc aggggtgggt gaaaaagccc
    16261 gagccgatgc gaaaattatc ctaaaaggca tcgttaaccg catccaaacc gaagaaaagc
    16321 tggaatccaa ctcgaccgta tggcaaaagc aggccggaag cggcagcacg gttgaaacgc
    16381 tgaagctacc gagctttgaa gggccggcac tgcctaagct gaccgctccc ggcggctata
    16441 tcgccgacat ccccaaaggc aacctcaaaa ccgaaatcga aaagctggcc aaacagcccg
    16501 agtatgccta tctgaaacag ctccaagtag cgaaaaacat caactggaat caggtgcagc
    16561 ttgcttacga cagatgggac tacaaacagg agggcttaac cgaagcaggt gcggcgatta
    16621 tcgcactggc cgttaccgtg gtcacctcag gcgcaggaac cggagccgta ttgggattaa
    16681 acggtgcggc cgccgccgca accgatgcag cattcgcctc tttggccagc caggcttccg
    16741 tatcgttcat caacaacaaa ggcgatgtcg gcaaaaccct gaaagagctg ggcagaagca
    16801 gcacggtgaa aaatctggtg gttgccgccg ctaccgcagg cgtagccgac aaaatcggcg
    16861 cttcggcact gaacaatgtc agcgataagc agtggatcaa caacctgacc gtcaacctag
    16921 ccaatgcggg cagtgccgca ctgattaata ccgccatcaa cggcggcagc ctcaaagaca
    16981 acttgggcga tgccgcactg ggtgcgatag tcagtaccgt acacggagaa gtagcgagca
    17041 aaatcaaatt taatctcagc gaagactaca ttacccacaa gattgcccat gccatagcgg
    17101 gctgtgcggc agcggcggcg aataagggta agtgtcagga tggtgcgatc ggtgcggctg
    17161 tgggcgagat agtcggggag gctttgacaa acggcaaaaa tcctgccact ttgacagcta
    17221 aagaacgcga acagattttg gcatacagca aactggttgc cggtacggta agcggtgtgg
    17281 tcggcggcga tgtgaataca gcggcgaatg cggctaaagt cgcgattgaa aataacctat
    17341 tatctcaaga agagtatgct cttagagaaa aattgatcaa aaaagccaaa gggaaaggcc
    17401 tattatcttt agattggggc agcctgaccg aacaagaggc aaggcagttt atctatttga
    17461 ttgagaaaga tcgatattct aatcaattgc ttgaccgata tcaaaaaaat ccaagtagtt
    17521 taaataatca agaaaaaaat attcttgcat attttattaa ccaaacctct ggaggtaaca
    17581 cagcttgggc agcttcgata ctgaaaacgc cccagtcaat gggtaatctc actattcctt
    17641 ccaaagatat taataacacc ttatcgaaag cctatcaaac attgagtcgt tatgattctt
    17701 ttgattacaa atcagctgtt gccgcacaac ctgcacttta cttattaaac ggaccgcttg
    17761 gcttcagtgt caaagcagct actgtggcag caggaggata taacattgga cagggagcga
    17821 aagcaatctc taatggagaa tatctgcatg gtacagttca ggttgttaat ggcacattga
    17881 tggttgcagg atctgtatct gcacaggctg caatatcggc caagcctgca cctgttaccc
    17941 gttatctgag caatgacagt gctcctgctt taagacaagc tttaactgct gaaagccaga
    18001 gaatccgcat gaaactgccg gaagagtatc gacaaatagg gaatcttgcg atagcaaaaa
    18061 ttgatgttaa aggattaccg caaaggatgg aagcatttag ttctttccaa aaaggggaac
    18121 atggatttat tt
//
LOCUS       DAXIFD010000019        17711 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.019, whole genome shotgun sequence.
ACCESSION   DAXIFD010000019 DAXIFD010000000
VERSION     DAXIFD010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17711
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.019"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(20..529)
                     /locus_tag="ACFOCN_000503"
     CDS             complement(20..529)
                     /locus_tag="ACFOCN_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003662333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HFC6969703.1"
                     /translation="MTMILSILSLFFIIRLLFLAVSIKHEKALIAKGATQYGKTNSTV
                     LAAVHTLYYLACFVWVWLSDTAFNGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYI
                     LPNHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQ
                     EEQAMATLF"
     gene            complement(860..1192)
                     /locus_tag="ACFOCN_000504"
     CDS             complement(860..1192)
                     /locus_tag="ACFOCN_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969704.1"
                     /translation="MQILSFQPDIAERMLEGTEGESVNENAQFVRTDNGYWIAWHEGV
                     AALLAPDTPPGIPCFWVEGAESLEELCVMVERGEFDEVEEFDGDDDEWLETAQGCGHH
                     GDACACGH"
     gene            complement(1237..1344)
                     /locus_tag="ACFOCN_000505"
                     /pseudo
     CDS             complement(1237..1344)
                     /locus_tag="ACFOCN_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            1483..2319
                     /gene="cysT"
                     /locus_tag="ACFOCN_000506"
     CDS             1483..2319
                     /gene="cysT"
                     /locus_tag="ACFOCN_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HFC6969705.1"
                     /translation="MLALKTPGVLPGFKLSLGLTVLCLSLLVVLPFAMMAAKAAEIGW
                     GGFWNTIAEPNVLAAVWLSLRMSFYAMLTNVVFGTLVAWVLVRYEFPGKGLANALVDL
                     PFALPTAVTGIALATLYAPNGWIGRFFEPLGIKIAFTPVGIWIALVVVSLPFIVRAVQ
                     PVLEELSGEYEEAAATLGANRFTTFRRVLLPEITPALLTGAGMMFARATGEYGSVIFI
                     AGNIPMVSEILPLIITGKLEQFDVQGASAVALFMLLVSFVILFALNVMQWALGRRSGA
                     KG"
     gene            2574..3434
                     /gene="cysW"
                     /locus_tag="ACFOCN_000507"
     CDS             2574..3434
                     /gene="cysW"
                     /locus_tag="ACFOCN_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HFC6969706.1"
                     /translation="MKPYSANPNLTEPRRLRVLLIAAALGFLLLMLVVPLVAVFYEAL
                     KGGWDLYLKSLNDPEAWSAIKLTLITALIVVPVNAVLGVAMAWLLTRFDFRGKQLLTT
                     LLDLPFSVSPVVAGLMFVLLFGAHTALGGRLEAQGIQIIFAIPGIVLATLFVTFPFVA
                     REIIPLMQAQGDSEEQAALILGASGWQMFWRVTLPNIKWALLYGIILTNARAMGEFGA
                     VSVVSGHIRGETNTVPLLVEIFYNEYNFTGAFALSGVLALLALATLAVQNIITKLQDK
                     KLAAAERNAV"
     gene            3431..4504
                     /locus_tag="ACFOCN_000508"
     CDS             3431..4504
                     /locus_tag="ACFOCN_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFC6969707.1"
                     /translation="MSITIQNLNKHFGNFHALKNINLNVPTGKLVSLLGPSGCGKTTL
                     LRIIAGLENADGGNILFDGQDVTAKHVRERKVGFVFQHYALFRHMNVFDNVAFGLTVL
                     PKSERPSKEQICTKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLL
                     DEPFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQT
                     GSAEAIYRKPENAFVTEFLGETDAFEGRIEKGFWHYNGFAWKLDAQYKWQEQTATGYI
                     RPHEWQIAAEHETPMICAEIEKVHAVGALTHILVKHGKQDVHITLAGSDAARYPIAEG
                     KELKLIPKQVYVFSQNELIEYSI"
     gene            complement(4561..6087)
                     /gene="ilvA"
                     /locus_tag="ACFOCN_000509"
     CDS             complement(4561..6087)
                     /gene="ilvA"
                     /locus_tag="ACFOCN_000509"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HFC6969708.1"
                     /translation="MNTPLPYSNYLIRILTASVYDVAVETPLEPARSLSVRLKNNILL
                     KREDLQPVFSFKIRGAYNKMSKLPKDALACGVIAASAGNHAQGVALSAQRLGCRAVIV
                     MPETTPKIKVDAVKSRGGEVVLRGVSYNDAYDYAMELAEKEGLTYIAPFDDPDVIAGQ
                     GTVGMEIVSQHPDPIRAVFVPIGGGGLAAGVAAFIKQVRPEIKVIGVQTNDSCCMKQS
                     VEAGEIVHLKDVGLFSDGTAVKVVGNETFRLCKELLDEIITVDTDAVCGAVKDIFDDT
                     RSITEPAGALALAGLKAYIAREGAENQTLIAVTSGANMNFHRLRHVSERSELGEGNEG
                     IFAVTIPEERGSFLKFVNILGNRNITEFNYRYGDDEKAHIFVGLQAAGPQDLAVIGSR
                     LDEAGLPNVDLTDDEIAKIHIRYMVGGRTDKVENERLVSFEFPERPGALARFLNHMQG
                     GWNITLFHYRNHGADYGRILVGIDVPPHDAAAFDGFLESLGYSYHEETQNAAYKLFLA
                     "
     gene            6235..7404
                     /locus_tag="ACFOCN_000510"
     CDS             6235..7404
                     /locus_tag="ACFOCN_000510"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HFC6969709.1"
                     /translation="MTAHKILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETL
                     TAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPES
                     AWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEA
                     RRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQ
                     NNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSK
                     LLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQIL
                     ETIQPIPAPVKKGQILGKIKIRQNGYTIAEKEIVALENVKKRSRWQRLWACLTGQ"
     gene            complement(7529..8101)
                     /locus_tag="ACFOCN_000511"
     CDS             complement(7529..8101)
                     /locus_tag="ACFOCN_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HFC6969710.1"
                     /translation="MTYEIQASVREAQGTGASRRLRREGQIPGILYGEGQEPVAIAVD
                     HKTVFYALEKESFHTALIKLSLNGETKDVIVRDFQMHPFRREVQHIDFQAVKADQPVR
                     IRVPLHIVNAENSQAVKLQGGRVSLLNTSVEVVALPANIPAFLDLDCAEVVAGDILHL
                     SDIKLPEGVESVSLKRNENLAVATVTGKKR"
     gene            complement(8168..9151)
                     /locus_tag="ACFOCN_000512"
     CDS             complement(8168..9151)
                     /locus_tag="ACFOCN_000512"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HFC6969711.1"
                     /translation="MAAYDSLMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVA
                     VELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYARQDR
                     RPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIK
                     QQRIENLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTC
                     LIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDT
                     IPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFNEEVMTGSMLLP"
     gene            complement(9318..9393)
                     /locus_tag="ACFOCN_000513"
     tRNA            complement(9318..9393)
                     /locus_tag="ACFOCN_000513"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9358..9360),aa:Gln,seq:ttg)
     gene            complement(9401..10246)
                     /gene="ispE"
                     /locus_tag="ACFOCN_000514"
     CDS             complement(9401..10246)
                     /gene="ispE"
                     /locus_tag="ACFOCN_000514"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HFC6969712.1"
                     /translation="MNIADGRQAFPAPAKLNLDLRITGRREDGYHNIESIFCLIDLQD
                     TVYLKPRDDGKIILHNPVDGMPQEVDLSYRAASLLQKYARNPAGVEIWLDKKIPTGAG
                     LGGGSSDAATVLLVLNRWWQCGLTQRQLIDSGAALGADVPFFIFGKNAFARGIGDRLD
                     EMDIPKQWYVIIKPPVHVSTAKIFTHESLTRNSASSIMPTFQNLQPFRNDMQAVVFKE
                     YPEVWKAYSELSRYGFALMTGSGACVFTACQDRNSAYNIYRQVSDLYEAYLAEGLSKH
                     PLLSV"
     gene            complement(10256..10837)
                     /locus_tag="ACFOCN_000515"
     CDS             complement(10256..10837)
                     /locus_tag="ACFOCN_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HFC6969713.1"
                     /translation="MKHTVSASVILLLTACAQLPQNNENLWQPSEHISSFAAEGRLAV
                     KAEGKGSYANFDWTYQPLVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAE
                     ELSRQLVGFKLPIQYLHIWADGRRVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTL
                     QLNNGNLNIRLVFTEIGMPSETETPERCAARTR"
     gene            complement(10977..12815)
                     /locus_tag="ACFOCN_000516"
     CDS             complement(10977..12815)
                     /locus_tag="ACFOCN_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6969714.1"
                     /translation="MLPARFTILSVLAAALLAGQAYAAGAADAKPPKEVGKVFRKQQR
                     YSEEEIKNERARLAAVGERVNQIFTLLGGETALQKGQAGTALATYMLMLERTKSPEVA
                     ERALEMAVSLNAFEQAEMIYQKWRQIEPIPGKAQKRAGWLRNVLRERGNQHLDGLEEV
                     LAQADEGQNRRVFLLLAQAAVQQDGLAQKASKAVRRAALKYEHLPEAAVADVVFSVQG
                     REKEKAIGALQRLAKLDTEILPPTLMTLRLTARKYPEILDGFFEQTDTQNLSAVWQEM
                     EIMNLVSLHRLDDAYARLNVLLERNPNADLYIQAAILAANRKEGASVIDGYAEKAYGR
                     GTGEQRGRAAMTAAMIYADRRDYTKVRQWLKKVSAPEYLFDKGVLAAAAAVELDGGRA
                     ALRQIGRVRKLPEQQGRYFTADNLSKIQMFALSKLPDKREALRGLDKIIEKPPAGSNT
                     ELQAEALVQRSVVYDRLGKRKKMISDLERAFRLAPDNAQIMNNLGYSLLSDSKRLDEG
                     FALLQTAYQINPDDTAVNDSIGWAYYLKGDAESALPYLRYSFENDPEPEVAAHLGEVL
                     WALGERDQAVDVWTQAAHLTGDKKIWRETLKRHGIALPQPSRKPRK"
     gene            complement(12980..13816)
                     /gene="panC"
                     /locus_tag="ACFOCN_000517"
     CDS             complement(12980..13816)
                     /gene="panC"
                     /locus_tag="ACFOCN_000517"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HFC6969715.1"
                     /translation="MQIIHTIQELRAWRKNAGTVAFVPTMGNLHEGHLALVREAKKRA
                     DNVVVSIFVNRLQFGQGEDFDKYPRTLQQDADKLEAEGVAVVFAPDEKELYPNVEQRY
                     NVEPPNLQNELCGKFRPGHFRGVATVVSKLFNIVAPDVACFGKKDYQQLAVIKGLTED
                     LNFDVEIVPVDTGRAEDGLALSSRNQYLSAAERDEAPRLYRELKAVAESLAQGSLDYA
                     GLERQAADHLTAAGWVVDYVEIRRADTLEVARAGDKKLVVLAAARLGTTRLIDNLEIK
                     LP"
     gene            complement(13939..14730)
                     /gene="panB"
                     /locus_tag="ACFOCN_000518"
     CDS             complement(13939..14730)
                     /gene="panB"
                     /locus_tag="ACFOCN_000518"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HFC6969716.1"
                     /translation="MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVDVLLVGDS
                     LGMAVQGRQSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAEL
                     MAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA
                     LLNDAKAHDDAGAAVVLMECVPAELAKKVTESVSCPTIGIGAGVDCDGQVLVMHDMLG
                     IFPGKTVKFVKNFMQGQSSIQAAVRAYVAEVKAKTFPAAEHIFAD"
     gene            complement(14872..14947)
                     /locus_tag="ACFOCN_000519"
     tRNA            complement(14872..14947)
                     /locus_tag="ACFOCN_000519"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14912..14914),aa:Thr,seq:tgt)
     gene            15113..15904
                     /locus_tag="ACFOCN_000520"
     CDS             15113..15904
                     /locus_tag="ACFOCN_000520"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HFC6969717.1"
                     /translation="MARHPYRRLRPAKSGFPEVGISEEGNIRSLHLGSDTVQSSMNLD
                     HPSELVLSYSRAMMGWLLFTDALPQHITQIGLGGGSFARWIDTYLPDTRQTAVDINPQ
                     VIAIARNLFELPFEGEKFEIIEADGAEYIKVFRHNTDVILVDGFDGEQIIDALVEEPF
                     FRDCRNALSSDGIFVTNWWSGDKRYQRFIERLLSVFEGRVLELPAESHGNVAVMAFQS
                     SPKEQNIDKLKKRADKLSNAYGLDFHRMLAGLKASNPNNGKHFHL"
     gene            15959..16600
                     /locus_tag="ACFOCN_000521"
     CDS             15959..16600
                     /locus_tag="ACFOCN_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6969718.1"
                     /translation="MLKPETIHISGPAGILETIHIPSEQVPARGVAVINHPNPLQGGT
                     NTNKVIQTAAKALSKLGFHCYLPNLRGVGGSEGTHDYGRGETQDCLAVIDYARAQHPE
                     APEFALSGFSFGGYVATFAAQARIPDLLLLIGAAVCHYTGRPEPSAVPNVAKTLMIHG
                     AEDEVVEIGKALKWAEPQDLPVITIAGSTHFFHGKLIVLRDTILRFAPVCLNG"
     gene            complement(16678..17601)
                     /locus_tag="ACFOCN_000522"
     CDS             complement(16678..17601)
                     /locus_tag="ACFOCN_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6969719.1"
                     /translation="MKKRNNPLPLLNGVKPSYLVLPHEKQFYGLPLLHFLCIRFPFVG
                     ADDWRRRLNSGFVVGSDGATLDEHTLFEPGKVMFYYRETSSEDEPRIPFEEKILHIDE
                     HLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDITPLHRLDKDTAGVMLL
                     SHNPATRGAYQTMFQNKTVWKTYEALAPTRTDLPYPLDVVSRLVRGEKFFTTQEAEGE
                     PNAHTTVELIENRGEFSLYRLTPHTGKKHQLRVHMMGLGMPLLNDALYPVPSEAGSED
                     YRKPLKLLAKKIAFADPLSGRERVFCSGFCL"
BASE COUNT         4323 a         5047 c         4173 g         4168 t
ORIGIN      
        1 ctataattga tgaaacgggt taaaaaagtg ttgccatcgc ctgttcttct tgtcggatac
       61 gcttaaataa gaccagcaaa taaatgggca ggccaatcaa taaaacatac cacgcttgac
      121 ataataaggc gatgccaatc agttcgggta tgatgtttaa aaaataattg gggtggcgga
      181 atgttttaaa caaccacgaa cgattaattt gatgatttgg taaaatatag attttaaccg
      241 tccaaatctc ccccaactgc ttaataatca atgacaatat cacaaatgaa gccatcaccg
      301 tcagcgtacc aatcaaggat atgccattaa aagcagtgtc agaaagccat acccaaacaa
      361 aacacgccaa ataataaagc gtatgaactg ccgcaagcac tgtggaattg gtttttccgt
      421 attgcgttgc ccctttggca atcaaggctt tttcatgttt aatagagacg gctaaaaata
      481 acagtctgat gataaaaaac aggcttaaaa tgcttaaaat cattgtcatt gatgtttttc
      541 cattgaaatt gaaataaata taaatcggat taatggtatt tttaattaat gatgtttcag
      601 accatcatgc tctataaaca attcccatta agtccgcgcc gcaacctgct ataataagtc
      661 tgcaatcggc gcaaatcaat gctttgcgtt tattgccatc ccaaaataat tgatgatgcc
      721 ttaattataa taccaagata agttttttat tcaataaaat acaaagggaa gcgttcagcc
      781 cattgcaaac agatgcaatc caccgattat ttaaaaaacg gcaaagcctt gccccccttg
      841 cggcaagcct gcaatgcctt taatgtccgc aggcgcaagc gtcgccgtgg tgcccgcaac
      901 cctgtgccgt ttcgagccat tcgtcgtcat cgccgtcaaa ctcttccact tcgtcaaact
      961 cgccgcgttc caccatgacg cacaactctt caaggctttc cgcgccttcc acccaaaaac
     1021 agggaatgcc cggcggcgta tcgggcgcaa gcagtgccgc tacgccttca tgccacgcaa
     1081 tccaatagcc gttgtccgta cggacgaatt gtgcgttttc gttgaccgac tcgccttccg
     1141 taccttccag catacgttcc gcaatgtccg gctgaaaaga taaaatctgc ataagtgttc
     1201 ctttatatga tggttttccg tcaaaacaag gcgttatagt ggattaaatt taaaccagta
     1261 cggcgttgcc tcgccttgcc gtactatttg tactgtctgc ggcttcgtcg ccttatcctg
     1321 atttaaattt aatccactat attttaaaac atcgcgcccg cttgagaaac tgccaaccgc
     1381 tttataacaa attcgtcttt gcaccaaact ttccattctt tccgtttttc ggacggcatc
     1441 gttaaagtag tccttccttt tccttatttt cagcattgtt ttatgttagc gctcaaaacg
     1501 cccggcgtac tgcccggctt caaactcagc cttggtctga ccgtattgtg cctgtcgctg
     1561 cttgtggtct tgccgtttgc gatgatggcg gcgaaggcgg cggaaatcgg ctggggcggc
     1621 ttttggaaca cgattgccga gccgaacgta ttggcggcgg tgtggctgag tttgcggatg
     1681 tcgttttatg cgatgctgac caatgtcgtg ttcggcacgc tggtggcgtg ggtattggtg
     1741 cgctatgaat ttccgggcaa gggtctggcg aacgcgctgg ttgatttgcc gtttgcgctg
     1801 ccgacggcgg ttacgggtat cgcgttggca accctgtatg cgcccaacgg ttggataggc
     1861 cgttttttcg agcctttggg catcaaaatc gcgtttacgc ccgtcggcat ttggattgcg
     1921 ctggtcgtcg tcagcctgcc ctttatcgtc cgcgccgtgc agccggtgtt ggaggaatta
     1981 tcgggcgaat atgaggaagc ggcggcgact ttgggcgcaa accgctttac gacgttccgc
     2041 cgcgtgctgc tgccggaaat cacgccggca ctcttgaccg gcgcgggaat gatgttcgcg
     2101 cgggcaacgg gggaatacgg ttcggtgatt tttatcgcgg gcaacattcc gatggtttcc
     2161 gaaatcctgc cgctgattat tacgggcaag ctggaacagt tcgacgtgca gggcgcgtcg
     2221 gcagtggcgt tgtttatgct gctggtttcg tttgtgattc tgtttgcact gaacgtgatg
     2281 cagtgggcgt tgggcaggcg ttcgggcgcg aaaggttgag gtcgtctgaa atacctgtta
     2341 ccgtcattcc cgcgcaggcg ggaatccatt ggtgaatttc ggctgcctta tttattttct
     2401 gttttcctgt tgccctgtgg tggattcccg cctgcgcggg aatgacggta gctagacgtt
     2461 tttattccct taatcaataa aaggttgtct gaaaacgaat ccgccccaca aaaaacggtt
     2521 tttcagacgg catccgaaca ccttaaaaca accaaccggg gaacaccacc gccatgaaac
     2581 cctattccgc caatcccaac ctgaccgaac cgcgccggct gcgcgtgttg ctgattgccg
     2641 ccgcgctggg ctttctgctg ctgatgctgg tcgtgccgct cgtcgccgtg ttttacgaag
     2701 ccttaaaagg cggttgggat ttgtacctga aatccttaaa cgatcccgaa gcgtggtctg
     2761 ccatcaaatt gacgctgatt accgcgctga ttgtcgtccc cgtcaatgcc gtcttgggcg
     2821 tggcgatggc gtggctgctg acccgttttg attttcgcgg caagcagttg ctgactaccc
     2881 tgctcgattt gccgttttcc gtatcgcccg tggtggccgg tttaatgttc gtcttattgt
     2941 tcggcgcgca cacggcattg ggcggccggc tcgaagcgca aggcatacag attatcttcg
     3001 ccatccccgg tattgttttg gcgacgctgt tcgttacctt cccctttgtc gcacgcgaaa
     3061 tcatcccgct gatgcaggca cagggcgaca gcgaagaaca ggcggcattg atactcggcg
     3121 caagcggctg gcagatgttt tggcgcgtta ccctgcccaa catcaaatgg gcattactct
     3181 acggcatcat cctcaccaac gcccgcgcga tgggcgagtt cggcgcggtc agcgtggtat
     3241 cgggacacat acgcggcgaa accaacaccg tcccgctttt ggtcgaaatc ttctacaacg
     3301 aatacaactt caccggcgca ttcgccctct ccggcgtatt ggcacttttg gcactggcga
     3361 cgctggcggt gcagaacatc atcaccaaat tacaagacaa aaaactcgcc gccgccgaaa
     3421 ggaacgcagt atgagtatca ccatccaaaa cttaaacaaa cacttcggca attttcacgc
     3481 gctgaaaaat atcaacctca acgtccccac cggcaaactc gtttccctgc tcggcccgtc
     3541 cggctgcggc aaaaccacac ttttacgcat tatcgccgga ctggaaaacg ccgacggcgg
     3601 caatatcctg tttgacgggc aagacgtaac cgccaaacat gtgcgcgagc gcaaagtcgg
     3661 cttcgtgttc caacactacg cccttttccg ccatatgaac gtgtttgaca acgtcgcttt
     3721 cggtttgacc gtattgccca agtccgaacg cccgtccaaa gaacaaatct gcactaaagt
     3781 cgaagaattg ctgaaactcg tacaactctc gcatttggca aaatcctatc cgcaccaact
     3841 ctccggcggg caacgccagc gcatcgccct cgcccgtgcg cttgcggtcg aaccgaagct
     3901 cctgcttttg gacgaaccct tcggcgcgtt ggacgccaaa gtacgcaaag aattacgcac
     3961 ctggctgcgc gatatccatc acaacctggg tgtaaccagc attctggtta cgcacgacca
     4021 agaagaagcc ctcgaagttt ccgacgaaat cgtcgtgatg aaccacggca aaatcgaaca
     4081 aaccggcagc gccgaagcta tttaccgcaa acccgaaaat gccttcgtta ccgagttctt
     4141 aggcgaaacc gacgcttttg aaggacgcat cgaaaaaggc ttctggcatt ataacggctt
     4201 cgcgtggaaa ttggacgcac aatacaaatg gcaggaacaa accgccaccg gctatatccg
     4261 cccgcacgaa tggcagatcg ccgccgaaca cgaaacaccg atgatttgtg ccgaaatcga
     4321 aaaagtccac gccgtcgggg cattgacgca tattttggtg aaacacggca aacaggacgt
     4381 gcatatcacg ctggctggca gcgatgccgc gcgttaccca atcgccgaag gcaaagaatt
     4441 gaagctgatt ccaaaacagg tttatgtctt ttctcaaaac gagctgattg aatattcgat
     4501 ttaaccatga aagcgcaatg ccgtctgaaa ggctttcaga cggcattgcg ctttcaagcg
     4561 tcaggcaaga aacagcttgt acgcggcatt ttgcgtttcc tcatgatagc tgtatcccag
     4621 actttccaag aaaccgtcaa atgcggcggc atcgtgcggc ggcacatcga taccgaccaa
     4681 aatccgcccg taatccgcac cgtggttgcg gtaatggaaa agcgtaatat tccaccctcc
     4741 ctgcatatgg ttcaaaaagc gtgccaatgc ccccggacgc tccggaaact caaaactgac
     4801 caaacgctcg ttttctactt tgtccgtccg ccctccaacc atataacgga tatggatttt
     4861 ggcaatctca tcatcagtca ggtcgacatt gggcaatccc gcctcatcca accggctgcc
     4921 gataaccgcc aaatcctgcg ggcctgccgc ttgaagtccg acaaagatat gcgctttttc
     4981 atcgtctccg tagcggtagt tgaactcggt aatattccta tttcccaata tattgacaaa
     5041 cttaaggaag ctgccgcgtt cttcggggat ggtaacggca aaaatacctt cgttgccctc
     5101 gcccaattca ctacgctccg acacatggcg caaacggtga aaattcatat tcgcaccgct
     5161 ggtaacggca atcagggttt ggttttccgc gccttctcgg gcgatatagg ctttcagacc
     5221 cgccaacgcc aacgcgcccg ccggctcggt aatgctgcgc gtgtcatcga aaatatcctt
     5281 gaccgcgccg caaaccgcat cggtatcgac tgtaatgatt tcatccaaaa gttctttgca
     5341 gaggcggaag gtttcgtttc cgacgacttt gaccgccgtg ccgtctgaaa acagcccgac
     5401 atctttcaaa tggacgattt cacccgcttc gaccgactgc ttcatacagc aggaatcgtt
     5461 ggtctgaacg ccgataactt tgatttcggg gcggacctgc ttgataaatg ccgccacgcc
     5521 cgccgccaaa ccgccaccgc ctatcggtac gaatacggcg cggattggat cgggatgctg
     5581 gctgacaatt tccatcccca ccgtcccctg tcccgcaatc acatcaggat catcaaacgg
     5641 cgcgatatag gttaaccctt ctttttccgc caactccatc gcataatcgt aggcatcgtt
     5701 gtatgaaacg ccccgcaaaa ccacctcgcc gccacggctt ttgaccgcat ccactttgat
     5761 tttcggcgta gtttccggca taacgataac ggcacggcag cccaaacgct gtgcggacaa
     5821 tgccacgcct tgagcatgat tgcccgcgct tgccgcaatc acgccgcaag cgagcgcatc
     5881 tttcggcaac ttggacattt tgttgtacgc gccgcgtatt ttgaacgaaa aaaccggctg
     5941 caaatcttcg cgtttcaaaa ggatgttgtt tttcaaacgt acagaaaggc tgcgtgccgg
     6001 ttccaaaggc gtttcgaccg cgacatcata gacagatgcc gtcaggatgc ggatgaggta
     6061 attggaataa ggaaggggcg tgttcataat tcaatatggg ataatcggtt tattaaaatc
     6121 gcaaaaccca aaaccatacg cccaagacgg cgcgaaagca agaaaaatcc gcccgatcag
     6181 acaccctaag cgtataatcg gcagactgaa acacgcacac aattagaata tttcatgaca
     6241 gcacataaaa tcctgcccgt cctgctttcc atcatcttag gcgtttctca cgcaacggcc
     6301 gcatcgcccg cgcccaacaa accggcggta cacgccgccc ccacgttcca aacacccgaa
     6361 accctcacag cggcacacat cgttatcgac cttcaaagca gacagacttt atccgccaaa
     6421 aacatcaata cccctgtcga accggcggca ctaacccaac tgatgaccgc atatttggtt
     6481 ttcaaaaaca tgaaatcggg aaatatccaa tctgaagaaa acttaaaaat acccgaatcc
     6541 gcatgggctt cagaaggaag cagaatgttt gtacgtcccg gcgatacggt cagcaccgac
     6601 aaactcttaa aaggcatgat tgcactatcc gcaaacgatg ccgccctaac ccttgccggc
     6661 cggctgggca acggctcgat tgaaaatttt gtgcaacaaa tgaacaaaga agcccgacgc
     6721 ttgggcatga agaacactgt attcaaaaac ccgacaggct tgagtagaga aggacaggtt
     6781 tccaccgcca aagacctcgc ccagctgtct gaagcattga tgcgcgactt tccggaatat
     6841 tacccgctgt tttccatcaa atctttcaaa ttcaaaaata tagagcaaaa caaccgcaat
     6901 atccttttat atagggacaa caatgtaaac ggtctgaaag ccggacacac agaaagcggc
     6961 ggctacaacc ttgccgtgtc atactccggc aacggcaggc acatccttgt catcacattg
     7021 ggttcggaat cggcggaaac acgcgcatca gacaacagca agctgctgaa ccgggcattg
     7081 caggccttcg atacgcccaa aatatatccg aaaggcaaaa ccgttgccca aatccaaatt
     7141 tccggaggca gcaaaaaaac cgtccgcgca ggcttcctca aagaagccta catcactctg
     7201 ccacataagg aagcgaaaat ggcagaacaa attctagaaa ccatacagcc gattcccgcc
     7261 ccggtaaaaa aagggcagat tttaggaaaa atcaaaatca ggcaaaacgg atacaccatt
     7321 gccgaaaaag aaatcgtcgc actggaaaat gtaaaaaaaa gaagccggtg gcaaaggctt
     7381 tgggcgtgtc tgacagggca gtaatctgcc gtttcaaata tcccgttttt ccaacaaata
     7441 aagaaatgcc gtctgaaaca cggttcagac ggcataaaac aacagggcgg tacgtattgc
     7501 atacgcgccg ccctgctgct gaaatcaatt agcgtttctt accggtaacg gtagcaacag
     7561 ccagattttc gttacgtttc agggaaacgc tttctacacc ttcaggcagt ttgatgtctg
     7621 acaagtgcag aatgtcgccg gcaaccactt cggcacaatc caaatccaag aaagcaggga
     7681 tgttggcagg caaagcaact acttcaacag aagtgtttaa cagagatacg cggccgcctt
     7741 gcagtttgac cgcttgggaa ttttcagcgt taacgatgtg caggggaacg cggatgcgta
     7801 cgggttggtc tgctttcaca gcttggaagt cgatgtgttg aacttcgcgg cggaacgggt
     7861 gcatttggaa atcgcggacg ataacgtctt tggtttcacc gttcagagac aacttaatca
     7921 acgcagtatg gaaagattct ttttccaatg cgtagaatac ggttttgtga tccacagcga
     7981 ttgcaacagg ctcttgacct tcaccgtaca gaatgccggg gatttggcct tcgcgacgca
     8041 ggcggcggct cgcaccagtg ccttgtgctt cacgaacaga ggcttgaatt tcataagtca
     8101 tgttaaatac tccaagttag gtaaaatcgc cgtcatcggc cgcgaccagc ttaagacggc
     8161 ttcgggctta tggcagcaac atgctgcctg tcatcacttc ttcattgaaa agatatgaga
     8221 cggattcttc attgctaatg cggcggacgg tttcggccaa cagaccggca atcgttacct
     8281 gacggatacg gtcgcagttt ttagccgctt cagacaaagg aatggtatcg gttacgacca
     8341 cctggtcgat ttcggatgag gcaatacggc tgactgcctc tccggagaat acggcgtggc
     8401 tggcatatgc caagacacgt tccgcccccc gctctttcag agcgacggcg gctttgcaca
     8461 gcgtatttgc agtgtcaatc atatcgtcca caatcagaca ggttctgcct tgaatatcgc
     8521 cgatgatgtt catgacttcc gccacattgg ctttcgggcg gcgtttgtcg atgattgcca
     8581 agtcggcatt cagggatttt gccacggcgc gggcgcggac gacaccgccg atgtccgggc
     8641 tgacgacggt cagattttca atccgctgtt gtttgatgtc gttcaacaga atcggggtgg
     8701 cataaatatt gtccaccgga atatcgaaga aaccttgaat ctggtcggca tgcaaatcga
     8761 cagtcaaaac acggtcgatc cctgccgaat acagcatatt tgccaccagt ttggcagaaa
     8821 tcggaacgcg gacggaacgc ggacggcggt cttggcgcgc atagccgaaa tacggaatgg
     8881 ctgtggtaat acgacctgcc gaagcacgct tcagtgcatc cgccatcgtc aggatttcca
     8941 tcaggttgtc attggtcggc gcacaggtcg gctgaaggat gaaaacatcg cgcccgcgta
     9001 cgttttccaa cagttcgacg gcaacttcgc cgtctgaaaa cttggatacg gaagcattgc
     9061 ccaaagaaat gtccaaatgc ctgacaacac gttgtgccaa ttcgggattg gcattgcctg
     9121 taaataccat caaactgtcg tacgcagcca tattctcacc tgattttatg tttaacttcc
     9181 gctcagaaaa cacaatgctt ccctctgctt gtaccaagcc cgacattata cctgcaacat
     9241 ccgacacaaa caaaggcatt tcaatatttt tatttctatg aaataaaagc gtgtaagcag
     9301 gcttacacgc ttttatttgg ctggggagga aggattcgaa ccttcgcatg ctggaatcaa
     9361 aatccagtgt cttaaccgct tgacgactcc ccaacaatgt ttatacggac aacaaaggat
     9421 gttttgaaag accctctgcc aaatatgcct cgtacaaatc tgaaacttgt cggtatatat
     9481 tgtatgcgct attcctatct tgacacgccg tgaatacaca cgcaccggaa cctgtcatta
     9541 aggcaaatcc atatcgggac aactcggaat aggctttcca aacttcaggg tattctttaa
     9601 atacaactgc ctgcatatca tttctaaacg gttgcagatt ttggaaagtc ggcattatgc
     9661 ttgaggcgga atttcgtgtc aagctttcgt gtgtgaaaat ttttgcagtg gaaacgtgga
     9721 cgggcggttt gatgatgaca taccactgtt tcggaatatc catttcgtcc agcctgtcgc
     9781 ctataccccg cgcaaacgca tttttgccga aaataaaaaa cggtacgtcc gcccccagag
     9841 ccgcgcccga atcaatgagc tgccgctgcg tcagaccgca ctgccaccaa cggttcaaca
     9901 ccagcaaaac ggttgccgca tccgagcttc cgccgcccaa acccgcccct gtcgggattt
     9961 ttttgtccag ccatatttcc acgccggcgg ggttgcgcgc atatttttgc agcaacgatg
    10021 cggcacggta gctcaaatct acttcctgcg gcatgccatc aaccggattg tgcaggatga
    10081 ttttgccgtc gtccctcggt ttcaaatata cggtatcctg caaatctatc aggcagaata
    10141 tgctttcgat attgtgataa ccgtcttccc gcctgccggt aatcctcaaa tcgagattca
    10201 gttttgcagg tgcgggaaac gcctgccgtc cgtccgcaat attcatctgt ccgccttatc
    10261 tcgtgcgcgc cgcacagcgt tccggggttt cggtttcaga cggcataccg atttcggtga
    10321 aaaccagcct gatgttcaaa tttccgttat tcagttgcaa cgttcggact tgccccccac
    10381 tgtcggcggt tctgccgaca gtccaaccgt attgttccaa tatgccgtcc ggcaggatgc
    10441 ggtaaggcgc gcccgccaca cgcctgccat ctgcccagat atgcagatat tggattggca
    10501 gtttgaaacc gaccagctgc ctgctcaatt cttccgcact ttccgcctga tagacatttc
    10561 ctttgccgtc cactgccaat gcgccgtccc tgtcttgaca caactgcccg agcgtactgc
    10621 ccaaaggggt attgatattg atggtttcca cgagcggttg gtatgtccaa tcgaaatttg
    10681 catacgaacc tttcccttcc gctttcactg ccaaccgccc ttctgctgca aaactgctga
    10741 tgtgttcgga cggctgccac aggttttcgt tattttgagg taattgcgca caagcggtca
    10801 aaagcaggat gaccgatgcg gatacggtgt gtttcatcag aatttcctta acgggtgcca
    10861 tcctgccggc cggcgggttc ggcgtgccgt gcaaaacgcg tgcgaactgc gtgcggtttg
    10921 cccgaatgcc gcagcttccc ggcaaacctt atgccgtctg aaaggatgga cctgcattat
    10981 ttccggggtt tgcgggaagg ttggggcaat gcgatgccgt gacgtttgag cgtttcccgc
    11041 catattttct tgtctcccgt aaggtgtgcc gcctgcgtcc atacgtcaac cgcctgatcg
    11101 cgttcgccca atgcccacaa cacttcgccc aaatgggcgg caacttcggg ctcggggtcg
    11161 ttttcaaacg aataccgcag atacggcagc gcgctttccg cgtcgccttt caggtaatac
    11221 gcccagccta tgctgtcgtt gacagcggta tcgtccgggt tgatttggta tgccgtctga
    11281 agcagggcga agccttcgtc caaacgtttg gaatcggaaa gcaggctgta gcccagatta
    11341 ttcataatct gagcgttatc gggtgcaagc ctgaacgccc tttcaagatc tgaaatcatt
    11401 tttttccgct tgccaagccg atcgtaaaca actgaccgct gtaccaatgc ctctgcctgt
    11461 aactctgtat tactgccggc aggcggtttt tcgataatct tgtccaaccc cctcaaagcc
    11521 tcccgtttgt cgggcagctt cgacagggcg aacatctgta ttttggacaa attgtctgcc
    11581 gtaaaatacc gcccctgctg ttcgggaagt ttccgcaccc tgccgatctg ccgcaaagcc
    11641 gccctgccgc cgtccaactc gacagccgcc gcagccgcca gcacaccttt gtcgaacagg
    11701 tattccggag cggacacttt tttcaaccac tgcctgactt tggtgtaatc ccttcggtcg
    11761 gcatatatca tcgccgccgt cattgccgcc ctgccccgct gttcccccgt ccccctgccg
    11821 tatgcctttt cggcgtagcc gtcgataacg gaagcacctt cttttcggtt tgccgccaat
    11881 atcgctgcct gaatatacag gtctgcattc ggattgcgtt ccaacagcac gttcaaacgc
    11941 gcataggcat catccagcct gtgcagggaa accagattca taatttccat ttcctgccag
    12001 acggccgaaa ggttttgggt gtctgtctgc tcgaaaaagc cgtcgagtat ttcgggatat
    12061 ttgcgtgcag tcagacgcaa cgtcattaaa gtggggggca atatttccgt atcgagcttc
    12121 gccaaacgct gcaaagctcc gattgccttt tccttttcgc gtccctgtac gctgaacacc
    12181 acatcggcaa ccgccgcttc gggcagatgt tcatatttca acgccgcacg gcgaaccgct
    12241 ttcgatgctt tttgcgccaa cccgtcctgt tgcacggcgg cttgtgccaa caataaaaac
    12301 accctgcggt tctgtccttc gtccgcctga gccagcactt cttccagtcc gtccagatgc
    12361 tgatttcctc tttccctcag cacgttccgc agccaccccg cccgtttttg cgccttaccc
    12421 ggtataggct caatctgccg ccatttctga taaatcattt ccgcctgttc aaacgcgttc
    12481 agcgacacgg ccatttccaa ggcgcgttcg gcgacttcgg gggattttgt gcgttccaac
    12541 atcagcatat aggttgccag agccgttccc gcctgcccct tttgcaaggc ggtttcccct
    12601 cccagcaacg taaatatctg attaacccgc tcgcccactg ccgcaagccg tgcgcgttcg
    12661 tttttgattt cttcctcgct gtaacgctgc tgctttctga aaacctttcc gacttccttc
    12721 ggcggcttcg catccgccgc gccggcggca tacgcctgcc cggcaagcag ggctgccgcg
    12781 agcacagata aaatggtgaa acgggcgggt aacataatct tcctttatcc gacagccgtc
    12841 cgaaccttca gacggcatat aatcaggcgt aactttatca caagcagaat cgtttgtaga
    12901 tttgcgaaac cccgttcaaa aaaataaatg ccgtctgaaa cgcaaatccg cttcagacgg
    12961 cattcccgac gcttgcggtt taagggagtt ttatttccaa attgtcaatc aggcgcgtcg
    13021 tccccagacg ggcggcggcc aagaccacca gtttcttatc tcccgcccgc gccacttcga
    13081 gcgtatcggc gcggcggatt tcgacataat cgaccaccca gcccgcagcg gtcaaatggt
    13141 cggcagcctg ccgctccaaa cctgcataat ccaaactgcc ctgcgccaag gattcggcaa
    13201 cagcctttaa ttcgcggtac aggcgcggtg cttcgtcgcg ttccgccgca ctcaaatact
    13261 ggttgcggct ggagagtgcc aaaccgtctt ccgcgcgccc cgtatcgaca ggcactattt
    13321 caacatcaaa attcaaatcc tcggtcaaac ctttaatcac ggcaagctgc tgatagtctt
    13381 ttttgccgaa acaggcaaca tccggcgcga caatattgaa cagcttggac accaccgtcg
    13441 ccaccccgcg gaaatgtccc ggacgaaact tgccgcacaa ctcattttgc agattgggcg
    13501 gttcgacgtt gtaacgctgt tccacgttcg gatagagttc tttctcatcg ggcgcgaaaa
    13561 caacggcaac accctcggct tccagcttgt ccgcatcctg ttgcaaagta cgcggatatt
    13621 tgtcgaaatc ctcgccctga ccgaattgca ggcggttgac gaatatgctg acaacaacgt
    13681 tgtcggcgcg ttttttggct tcgcgaacga gggcaagatg cccttcgtgc agattgccca
    13741 tggtcggcac aaatgccacc gttcccgcat ttttacgcca cgcgcgcagt tcttgaatgg
    13801 tatgtatgat ttgcataacg gtaatcctta tccttcgggc ttcctgcccg acaaaacgcg
    13861 ccgattatac gcgccgcgca cggcaaaaca aaatgccgtc tgaaacggct ttcagacggc
    13921 atcggcagca aaccttgttc agtctgcaaa aatatgttcc gcagcaggga aggttttggc
    13981 tttgacttcg gcaacatacg cccgaaccgc cgcctgaatg ctgctttgcc cctgcataaa
    14041 gtttttgacg aatttcaccg tcttacccgg gaaaatgccg agcatatcgt gcatcaccaa
    14101 aacctgcccg tcgcaatcga cacccgcgcc gatgccgatg gtcggacagg aaacggattc
    14161 agttaccttt tttgccagtt ccgcaggaac acactccatc agcacgaccg ccgcccccgc
    14221 atcatcatgc gccttggcat cgttaagcaa cgcctgcgcc ttgccgccgc gcccctgaac
    14281 cttgtatccg ccgaaggcaa acacggattg cggggtcaga ccgatgtggg cacagaccgg
    14341 aataccgcgc atttgcagaa attcggtcgt ttccgccatc cacacaccgc cttcgagttt
    14401 gaccatatgc gcgccggcag ccatcagttc ggcggcggcg gcaaacgcct gctccttact
    14461 ctgctgatat gcaccaaacg gcaaatcgct gacaatcatc gcattttttg caccgcgtgc
    14521 tacacattcg gtgtgataac acatatcgcg caggctgacg ggcagcgtcg actgccgccc
    14581 ttgaaccgcc attcccaaag aatccccaac cagcagcaca tccacgccgg catcgtccat
    14641 cagcgcggca aaactggatt cgtaagcggt cagcatagcg attttctcgc ccgccgcctt
    14701 cattttttgc agtgtgttca cagtaatcat cagatattgt taccccgccc ttttcagacg
    14761 gccttttcag tttgaaacgg gctattatag tgaaatgccc gcagccctgc caccgaccgt
    14821 gccgcaaatg caaaacagcc cgactgtttt acacaatcgg actgtcaaat ctggtgccgg
    14881 caccaagagt cgaactcggg accccctgat tacaagtcag gtgctctacc aactgagcta
    14941 taccggcaaa gaaggcgaat tatgcaggca acttcacact ttggcaagga atttatccga
    15001 aagccccggc aaatccgaat aagtaattta tttgaaaaga aattaatttg aagcaggaca
    15061 agcatcggca ttctgataaa atatccgcct ttcaaaccga ccgttcacac cgatggcaag
    15121 acatccctac cgccgcctgc gtcctgcaaa atccggcttt cccgaagtcg gcatttccga
    15181 agaaggcaat atccgttcgc ttcacttggg cagcgacacc gttcaaagct caatgaacct
    15241 cgaccacccg tccgagctgg tactctctta cagccgcgcg atgatgggct ggctgctgtt
    15301 taccgacgca cttccgcagc atatcaccca aatcggcttg ggcggcggct cgtttgcacg
    15361 ctggatagac acctacctgc ccgacacgcg ccaaaccgcc gtggacatca atcctcaggt
    15421 catcgccatt gcccgcaacc tgtttgagtt gcctttcgag ggcgagaaat ttgaaattat
    15481 tgaagcagac ggtgcagaat atatcaaagt cttccgccac aacaccgatg tgattttggt
    15541 ggacgggttc gacggcgaac aaatcatcga tgcgctggtt gaagaaccgt ttttccgaga
    15601 ctgccgaaac gcactctctt cagacggcat attcgtaacc aactggtgga gcggcgacaa
    15661 acgctaccaa cgcttcatcg aacggttgtt gagcgttttt gaagggcgcg tcttggaact
    15721 tcctgccgaa agccacggca atgtcgcggt aatggccttc caaagcagcc ccaaagagca
    15781 aaacatagac aaactcaaaa aacgtgccga caaactgagc aacgcatacg gattggactt
    15841 ccaccgtatg cttgccggcc tgaaagcgtc caaccccaac aacggcaagc atttccacct
    15901 ttaagcaact atcttcacgg ctgcattgga acatgcggaa aatcaagagg aaatcattat
    15961 gctgaaaccc gaaaccatac acatatccgg tcctgccggc attttagaaa ccatccatat
    16021 cccgtccgaa caagtaccgg cacgcggtgt tgccgtcatc aatcatccca accccctcca
    16081 gggcggaaca aacaccaaca aagttatcca aactgccgcc aaagccttaa gcaaactcgg
    16141 cttccactgc tacctaccca accttcgcgg cgtaggcggc agcgaaggca cacacgatta
    16201 cggacgcggc gaaacgcaag actgcctcgc cgtcatcgac tatgcccgtg cccaacatcc
    16261 cgaagccccc gaatttgcct tatccggctt ctccttcggc ggttatgtcg ccacatttgc
    16321 cgcacaagcg cgcatacccg atttattgct gctcatcggc gcggcagtct gccactatac
    16381 cggccgcccc gagccgtccg ccgttcccaa tgttgccaaa acgctgatga tacacggcgc
    16441 ggaagacgaa gtcgtcgaaa tcgggaaagc actgaaatgg gcggaaccgc aagatttgcc
    16501 cgtcattacc atcgccggtt ccacgcattt ctttcacggc aaactcatcg tcctgcgcga
    16561 caccatcctc cgcttcgcgc ccgtatgcct gaacggataa aacccctttc agacggcatc
    16621 gataatgtaa aacccgtatc ggcggcatcc gccgatacgg gtttgcgttc cctctcatta
    16681 taggcaaaat ccgctgcaaa acaccctttc ccgacccgac aaaggatctg caaacgcaat
    16741 cttttttgcc aatagcttca aaggtttccg ataatcctcg ctgcccgctt cagacggcac
    16801 gggatagagc gcgtcattca acagcggcat acccaaaccc atcatatgca cgcgcaactg
    16861 gtgtttcttg cccgtatgcg gcgtaaggcg gtaaaggctg aattcccccc tgttttcaat
    16921 cagttcgacc gtcgtatgtg cgtttggttc gccttccgcc tcttgcgtcg taaaaaattt
    16981 ctcacccctc accaaacgcg aaaccacatc gagcggatac ggcaaatccg tccttgtcgg
    17041 cgcaagcgcc tcatacgttt tccataccgt tttgttttga aacatcgtct gataggctcc
    17101 gcgcgtggca ggattatgcg acagcagcat cacgcctgcc gtatccttgt ccaagcggtg
    17161 cagcggcgta atgtcctcaa cattcaaatg ctgcaattca ggccgcaaac gcaggcgcgt
    17221 gagcagggtt tcccgcaaaa acctgccgct ggggatgacg ggcagaaaat gcggcttgtc
    17281 caccacaatc aaatgctcat caatatgcaa aatcttttct tcaaacggaa tacgcggctc
    17341 atcctcactg ctggtttccc gataataaaa catcacctta cccggctcga acaaagtatg
    17401 ttcgtccaac gtcgcaccat ccgaaccgac cacaaaaccg ctgttcaacc gcctgcgcca
    17461 atcgtccgcg cccacaaaag gaaagcggat gcacagaaaa tgcagcagcg gcagcccgta
    17521 aaactgcttt tcatgcggca gcaccaaata actgggtttg acaccgttca acagaggaag
    17581 aggattattg cgttttttca tgcggcggat tgtaaccgtt tttcacaaac ttttcagacg
    17641 gcatatcgaa acataattga caaaaacaaa catattgttt tttatgattt aaaaatttat
    17701 ttagacaaga t
//
LOCUS       DAXIFD010000020        16998 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.020, whole genome shotgun sequence.
ACCESSION   DAXIFD010000020 DAXIFD010000000
VERSION     DAXIFD010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16998
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.020"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(51..1220)
                     /gene="metK"
                     /locus_tag="ACFOCN_000523"
     CDS             complement(51..1220)
                     /gene="metK"
                     /locus_tag="ACFOCN_000523"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HFC6969720.1"
                     /translation="MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAET
                     LVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPD
                     IAQGVNEGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGLL
                     PWLRPDAKAQLTVVYDSESGKVKRIDTVVLSTQHDPEIGYEELKNAVIEQIIKPVLPS
                     ELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVD
                     RSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLV
                     REHFDLRPKGIVQMLDLLRPIYSKSAAYGHFGREEPEFTWERTDKAAALRAAAGL"
     regulatory      complement(1403..1513)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01725"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="SAM-I-IV-variant riboswitch; SAM riboswitches
                     modulate the expression of downstream genes in response to
                     levels of S-adenosylmethionine; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF01725"
     gene            1566..2462
                     /locus_tag="ACFOCN_000524"
     CDS             1566..2462
                     /locus_tag="ACFOCN_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6969721.1"
                     /translation="MFRLQFGLFPPLRTAMHILLTALLKCLSLLPLSCLHTLGNRLGH
                     LAFYLLKEDRARIVANMRQAGMNPDPKTVKAVFAETAKGGLELAPAFFRKPEDIETMF
                     KAVHGWEHVQQALDKHEGLLFITPHIGSYDLGGRYISQQLPFPLTAMYKPPKIKAIDK
                     IMQAGRVRGKGKTAPTSIQGVKQIIKALRSGEATIVLPDHVPSPQEGGEGVWVDFFGK
                     PAYTMTLAAKLAHVKGVKTLFFCCERLPGGQGFDLHIRPVQGELNGDKAHDAAVFNRN
                     AEYWIRRFPTQYLFMYNRYKMP"
     gene            complement(2506..3570)
                     /gene="tsaD"
                     /locus_tag="ACFOCN_000525"
     CDS             complement(2506..3570)
                     /gene="tsaD"
                     /locus_tag="ACFOCN_000525"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HFC6969722.1"
                     /translation="MLVLGIESSCDETGVALYDTERGLRAHCLHTQMAMHAEYGGVVP
                     ELASRDHIRRLVPLTEGCLAQAGASYGDIDAVAFTQGPGLGGALLAGSSYANALAFAL
                     DKPVIPVHHLEGHLLSPLLAEEKPDFPFVALLVSGGHTQIMAVRGIGDYALLGESVDD
                     AAGEAFDKTAKLLGLPYPGGAKLSELAESGRPEAFVFPRPMIHSDDLQMSFSGLKTAV
                     LTAVEKVRAENGADDIPEQTRNDICRAFQDAVVDVLAAKVKKALLQTGFRTVVVAGGV
                     GANRKLRETFGNMTVQIPTPKGKPKHPSEKVSVFFPPTAYCTDNGAMIAFAGAMHLKT
                     GREAGAFNVRPRWPLSEIVK"
     gene            complement(3686..4873)
                     /gene="ccsB"
                     /locus_tag="ACFOCN_000526"
     CDS             complement(3686..4873)
                     /gene="ccsB"
                     /locus_tag="ACFOCN_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HFC6969723.1"
                     /translation="MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTR
                     SGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGNIKSAEIF
                     LLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
                     FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVF
                     GFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAE
                     LVSLRAEEKGGKSWLPQSVLIEEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWD
                     PKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSY
                     GTL"
     gene            complement(4866..6818)
                     /locus_tag="ACFOCN_000527"
     CDS             complement(4866..6818)
                     /locus_tag="ACFOCN_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HFC6969724.1"
                     /translation="MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGPFWAQIFGF
                     LGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSL
                     LDVKIAPEVAKRYLEVQGFQGKTVSREGGSVLIAAKKGTMNKWGYIFAHVALIVICLG
                     GLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILSASNLSFRGNVNISEGQSADVV
                     FLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNH
                     PLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLE
                     FDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAV
                     EYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGEGR
                     KRLVADATKDAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYF
                     YEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGF
                     SEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSAR
                     SERDLQKEFPKHVESLQRLGKDLNHD"
     gene            complement(7095..7718)
                     /locus_tag="ACFOCN_000528"
     CDS             complement(7095..7718)
                     /locus_tag="ACFOCN_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6969725.1"
                     /translation="MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN
                     SGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAK
                     QQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLG
                     GQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR"
     gene            7924..8553
                     /gene="yihA"
                     /locus_tag="ACFOCN_000529"
     CDS             7924..8553
                     /gene="yihA"
                     /locus_tag="ACFOCN_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HFC6969726.1"
                     /translation="MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLT
                     NHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQ
                     RKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVK
                     KLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPKEN"
     gene            complement(8674..11070)
                     /locus_tag="ACFOCN_000530"
     CDS             complement(8674..11070)
                     /locus_tag="ACFOCN_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HFC6969727.1"
                     /translation="MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHY
                     QPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWG
                     VARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDK
                     ILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPE
                     RAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVQKIDQSALYVAEMVRQELYE
                     KYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVE
                     ETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEK
                     MGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFN
                     RAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRY
                     SGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETT
                     PLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLEAGQNAPQAIDPRNAYIM
                     YKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPK
                     SMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLT
                     LDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
                     "
     gene            11222..12337
                     /gene="pilM"
                     /locus_tag="ACFOCN_000531"
     CDS             11222..12337
                     /gene="pilM"
                     /locus_tag="ACFOCN_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HFC6969728.1"
                     /translation="MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQL
                     SGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQ
                     NLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVA
                     SRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAA
                     QTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVA
                     NYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQ
                     CVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL"
     gene            12340..12939
                     /locus_tag="ACFOCN_000532"
     CDS             12340..12939
                     /locus_tag="ACFOCN_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HFC6969729.1"
                     /translation="MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYL
                     FIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKVEELQLKRLQAA
                     KILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
                     SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN"
     gene            12940..13587
                     /locus_tag="ACFOCN_000533"
     CDS             12940..13587
                     /locus_tag="ACFOCN_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HFC6969730.1"
                     /translation="MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFK
                     SQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIP
                     NLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLS
                     RIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK"
     gene            13605..14150
                     /locus_tag="ACFOCN_000534"
     CDS             13605..14150
                     /locus_tag="ACFOCN_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HFC6969731.1"
                     /translation="MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAP
                     TLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILK
                     SGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
                     LLLNSSDKNTEQAAAPAAEQN"
     gene            14169..16454
                     /gene="pilQ"
                     /locus_tag="ACFOCN_000535"
     CDS             14169..16454
                     /gene="pilQ"
                     /locus_tag="ACFOCN_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HFC6969732.1"
                     /translation="MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKV
                     SFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLV
                     LNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQATAPSTKSAV
                     SVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQTAAPAKQQAAAPAKQT
                     NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKT
                     PVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKT
                     FTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQ
                     ARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRS
                     ILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQV
                     MIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGGETKINL
                     PITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIP
                     FTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTIL
                     CISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDR
                     RELLIFITPRIMGTAGNSLRY"
BASE COUNT         4587 a         4827 c         3877 g         3707 t
ORIGIN      
        1 aaaatgccgt ctgaactgtt cagacggcat ttttgatttt caaaccggaa ttacagcccc
       61 gctgccgccc tcaatgcagc agctttgtcg gtgcgctccc aagtgaactc aggttcttcg
      121 cggccgaaat gtccgtaagc ggcggattta ctgtaaatcg ggcgcaagag atcgagcatt
      181 tggacgatgc ctttggggcg caggtcgaaa tgttcgcgaa ctaaggtaat cagtttttcc
      241 tcgctgattt tgcctgtgcc gaaagtgtcg atggaaatcg aagtcggttc ggcaacgccg
      301 atggcgtagg aaacttggat ttggcattgg gttgccaaac cggcggcgac gatgtttttc
      361 gcaacgtagc ggcaggcgta agcggcggaa cgatccactt tggacgggtc tttgccggag
      421 aacgcgccgc cgccgtgcgg agccgcgccg ccgtaggtat caacgatgat tttacggccg
      481 gtcaaaccgc agtcgccttg cgggccgccg atgacgaagc ggccggtcgg gttgatcagg
      541 tatttggttt cgtcggtcag cagttcagac ggcaggacgg gcttgataat ctgctcaatg
      601 acggcgtttt tcaactcttc ataaccgatt tccgggtcgt gttgcgtaga gaggacgacg
      661 gtatcaatgc gttttacttt gccggattcg ctatcgtaaa ccacggtcag ttgggctttt
      721 gcgtcgggac gcagccaagg caggaggccg tctttgcgta attcgctttg acgctgcatc
      781 aggcggtggc tgtaatagat ggcaaacggc atcagggtcg gggtttcgtc gcaggcatag
      841 ccgaacatca aaccttggtc gccagcgcct tggttcaagt caatgccttc gccttcgttc
      901 acgccttggg cgatgtccgg agattgctgg tcgtagtaca cgccgaccgc gcagccgttg
      961 gcatcaaagc ccagctcgga ggagttgtag ccgatgcgtt tgatggtttc gcgtgcgact
     1021 ttgatgtagt ccacttgggc ggtggtggtg atttcgcctg ccaatacgca caagcctgtg
     1081 ttgaccaaag tttctgcggc gacacgcgct ttggggtctt gcgccaagat ggcatccaaa
     1141 atcgcgtcgg atacttggtc ggcaactttg tccggatggc cttcggatac cgattcggaa
     1201 gtaaacagat attcgctcat tgagattttc cttgaaaaac aaaccatctt cttcagacgg
     1261 catgttgtat gaacataatg tcgacagcgg gaaatatagc aaaatttccc tattcatacc
     1321 attcagttga gaaatattcc catttgaatg gcactttgga atctctgccc gtacgtttct
     1381 tacaggcaaa aaaattcccg catcaagcgg gtttggattg ctctggtgag ccacatcggc
     1441 ttttcaaccg tccaccttac ttttcctttt gaaaagcagg ttggcatgga attcccaact
     1501 cttaatgcag cgcggatggt agcagaaaag cctttccgcc gcaatacttc cctttttcag
     1561 acggcatgtt tcgtttacaa ttcgggctgt ttcccccttt gcgaaccgcc atgcacatcc
     1621 tgttgaccgc cctgctcaaa tgcctctccc tgctgccact ttcctgtctg cacacgctgg
     1681 gaaaccggct cggacatctg gcgttttacc ttttaaagga agaccgcgcg cgcatcgtcg
     1741 ccaatatgcg tcaggcaggc atgaatcccg accccaaaac agtcaaagcc gtttttgcgg
     1801 aaacggcaaa aggcggtttg gaacttgccc ccgcgttttt cagaaaaccg gaagacatag
     1861 aaacaatgtt caaagcggta cacggctggg aacatgtgca gcaggctttg gacaaacacg
     1921 aagggctgct attcatcacg ccgcacatcg gcagctacga tttgggcgga cgctacatca
     1981 gccagcagct tccgttcccg ctgaccgcca tgtacaaacc gccgaaaatc aaagcgatag
     2041 acaaaatcat gcaggcgggc agggttcgcg gcaaaggaaa aaccgcgcct accagcatac
     2101 aaggggtcaa acaaatcatc aaagccctgc gttcgggcga agcaaccatc gtcctgcccg
     2161 accacgtccc ctcccctcaa gaaggcgggg aaggcgtatg ggtggatttc ttcggcaaac
     2221 ctgcctatac catgacgctg gcggcaaaat tggcacacgt caaaggcgtg aaaaccctgt
     2281 ttttctgctg cgaacgcctg cctggcggac aaggtttcga tttgcacatc cgccccgtcc
     2341 aaggggaatt gaacggcgac aaagcccacg atgccgccgt gttcaaccgc aatgccgaat
     2401 attggatacg ccgttttccg acgcagtatc tgtttatgta caaccgctac aaaatgccgt
     2461 aacgaaaata aaaatgccgt ctgaacaatt tcagacggca ttttgtcatt tgacgatttc
     2521 cgacagcggc cagcgcgggc gtacattaaa tgcaccggct tccctacccg ttttcaaatg
     2581 catcgcgcct gcaaaggcaa tcatggcacc gttgtccgtg cagtatgccg tcggcgggaa
     2641 aaacacgctg actttttcgg acggatgttt cggcttgcct ttgggggtcg ggatttgcac
     2701 cgtcatgttg ccgaaagttt cacggagttt gcggtttgca ccgaccccgc cggcgaccac
     2761 tacggttctg aaccctgtct gcaacagggc ttttttcact ttcgccgcca acacatcgac
     2821 taccgcatct tgaaacgcac ggcagatgtc gttgcgtgtc tgctcaggaa tgtcatccgc
     2881 cccgttttcc gcgcgcactt tctcgacggc agtcaaaaca gcggttttca aacctgaaaa
     2941 actcatctgc aaatcgtcgg aatgaatcat cgggcgcgga aaaacaaacg cttcgggcct
     3001 gcccgattcc gcaagttccg acagtttcgc accgcccgga tacggcaagc ccagcagttt
     3061 cgccgttttg tcgaatgcct cgcccgccgc atcatcgacg ctctcgccca aaagcgcgta
     3121 gtcgcctatg cccctgaccg ccataatctg cgtatgcccg cccgaaacca acagcgcgac
     3181 aaaaggaaag tcgggttttt cctccgccaa cagcggcgac agcagatgcc cttccaaatg
     3241 atggacggga ataacaggct tatccagcgc aaaagccaag gcattggcgt aactcgaacc
     3301 cgccagcaac gcgccgccca aaccgggccc ctgcgtaaag gcaaccgcgt caatgtcgcc
     3361 atacgatgcg cctgcctgcg ccagacagcc ttccgtcaac ggaacaaggc ggcggatatg
     3421 gtcgcggctt gccagctccg gcacaacccc gccgtattcg gcgtgcattg ccatctgcgt
     3481 gtgcagacag tgcgcccgca atcctcgttc ggtgtcatac agcgcaacgc ctgtttcgtc
     3541 gcaagaagat tcgattccca ataccaacat ggtctgatgc cgttaaaaac tgaaaaacgt
     3601 attctagcgg atttcggcac gactgccgta tcccaaaaac ggaacatgcc gtctgaagcc
     3661 cttcagacgg catcgtcgca ccgtatcaaa gcgttccgta agaatgcagc ccgctcaaaa
     3721 acatattcac gccgataaag gcaaatgcgg ttacgaacaa accgataatc gcccaccacg
     3781 ccagcacttt gccgcgccaa ccggcaacca gccgcaagtg cagccaaacg gcgtaattga
     3841 gccagacgat gaacgcccac gtctctttcg ggtcccaact ccaatagcgt ccccaagcat
     3901 ccgccgccca cagcgcaccc aaaatggtgg caatggtaaa gaacagaaag ccgacggcaa
     3961 tcgccttata cataacttcc tcaatcaaca cggattgcgg cagccacgat ttcccgcctt
     4021 tttcttccgc acgcagggaa accagttcgg caataccgag catcgcggaa atgcaaaacg
     4081 cgccgtaacc gataaagttt gccggaacgt ggattttcat ccaccaagat tgcaatgccg
     4141 gaatcagcgg ctggatggta tgcgcctcgc gggacacgct gtaccacaag acaaatccaa
     4201 ccacgaccgc cataaagccg aacacgaagc cgcccaattt ctgtatggcg aacttacctt
     4261 cataataaag atacatcagc gcggtaatca ccaaaaacag gatgaacact tcatacaggt
     4321 tggaaaccgg aatatgcccc gcatcgggac ggagcagata gctttcgtgc caacgtacca
     4381 gcagaccggt aaagcctgct acggcagaca cccatgcaaa cacggttccc atacccaaca
     4441 gcgtgttggt cggcacattt tttacgcttg ccaaaaccgc gcccgaaata taggcgaaca
     4501 gggcgaagaa gacaaaggcg cactgccaca taatcgccga ctggctgctg aggaaatacc
     4561 gcaacaggaa aatctctgcc gatttgatgt tgccgccata caaaccgacg gcggcatagg
     4621 caagcaatac gcttaaagga acaaaccagc gcatcggttt gaaaaaccaa cccaaaaaca
     4681 cggcaatacc ggcacttgcc cacaacatga ccgtttcgta aatgtccata tgcataccgg
     4741 aacgggtctg tacgaaaacc gtagccgcaa aaaccagcac ggcaaatacc caatcccaaa
     4801 gattcagatt gctgatcaaa gacttctgaa tcagcagctc gtgttccgga agggttttat
     4861 agtgttcagt catgattcaa gtccttgccg agccgttgca gactctcgac gtgttttgga
     4921 aattccttct gcaaatcccg ttcgctgcgg gccgaagaca tggcaaaacg gattttgccg
     4981 tctgaaaaca atacccacgc ccgtttttcg cgcacataaa acatcaatac cgtacccaat
     5041 accaacagca ccgagccgag atagaccaaa agcgcacccg gggaacgggt catctgcaaa
     5101 cccgacgaac gcacctcgga aaacccatca agttgcagca gcataggcgc gggatattcg
     5161 gtcaaacccg tgtacgcatc catactgtgc agcaggaaac ggttccgcgc ttcatcctgc
     5221 tgccattcgg gcaagccgta ccggcgtatg gtttcatcca aagcagcgtt catcacgccg
     5281 taaagcattt cgtagaaata accctgcatc ttatcctgct gctctttcgg gatattggac
     5341 gtaataaatt cgtccaatcc caaatagcct ttttgtgcaa agatgttcag cgtgttttcc
     5401 gcagccagca tgaattgttc gcggatttcg gcaggtgcgt ctttggttgc gtcggcaacc
     5461 agacgtttgc gcccttcccc atctttcaaa aactcacgca atgccataaa ggtgtccgct
     5521 ttcaactgct tgtccaaggg gatacgcagc cagcggtatt gctgctgcaa gccgctgcgc
     5581 gtgccggtaa tccaaaaata atcctgttcc tgcaaaaccg gcagcatata gtttttatat
     5641 tcgaccgcct gccctgccgc atcacggata cggtaaacaa tggaagggcc gatattggtg
     5701 tattttttac cttcctgagt aacggcgcgg acatcgttca gcgtggattt caggcttttt
     5761 tcccgttccg cgccctcgct catgtcctcc acattcatag aagtgaactg atcgaactca
     5821 agacgatatt tgtgtttgcc aatttccaac ggaaactggt gtatggatgt tgccttcaac
     5881 acgacaggct cgcgcgaagc atcacccaaa ttccacgcct tgaatgtcaa atccgaaccg
     5941 ccgtcggcaa aactcgcctg ataaatcgtg atgccgtgca aggtcaaagg atggttcacg
     6001 cggatggtgc gctcgagttt ctcaccggtt gccttgtccg tcacttcaat atcgctggcg
     6061 aaatcacgcg gcatacccgt attgtaaaaa tcgatatgga attttttcag tttgacttca
     6121 aaaggcaagt cctgaaccaa tatcccgttg tcggcattca ggaaaaccac atccgcactc
     6181 tgcccctcgg aaatattgac gttgccccta aatgagagat tggacgcact caaaatactt
     6241 tcgggcttga aatccttggc ataaaccgcc tgattgtccg gaacaatccg accggtcagc
     6301 atacccagtt tcaacagcag gttactgtct atcaacccgc ccaggcaaat gacaatcaaa
     6361 gcaacatggg caaagatata gccccatttg ttcatcgtgc cttttttggc ggcaatcaga
     6421 accgacccgc cctcacggct gacggttttt ccctgaaaac cctgcacctc cagataacgt
     6481 ttggcaactt cgggggcaat ttttacatcc aacagcgaag aatggcgcat cgccgccaga
     6541 gatttttctt taaccttttc ccgaaaagac ttcatttcgc gccagaacgg cggcacattg
     6601 cgaatcaggc acaaactggt agaaaccacc aaaaacatca tgataacgac aaaccatgcc
     6661 gaagcataga cgtcatacag tcccagaaaa ccaaaaatct gcgcccaaaa aggtccgaat
     6721 ttgaccaaat aatccgtctg cggctggttt tgctgcaaca ccgtaccgat aaccgatgca
     6781 atacccagca gactgagcaa agcgaccgca aagcgcatgg agctgaaaaa agcgaaccac
     6841 ggacgggaaa gaagtggggg agatctacgg gatttactca ttgtgtgttt attccgccat
     6901 caggaatatg ggaaagcaga attgggcaaa cagaaaacaa cgtcccgatt ctactgtctt
     6961 gatgcttttt atttcaagac aatgaagaca gcctgcatcg attccaacgg ttgcgattga
     7021 aaaaacttat cgcagaattg cctgaagccg tctgaaaact tttcagacgg cctctaaaac
     7081 agactattgc ggaattaacg caaaccttgg ataaagttgg cgaccgcttt caaatcttct
     7141 tcagacatac ggtttgcaat atcttccatg atggtatttt tacgctgacc ggacttgtag
     7201 gcattcatct gttcaacaat atatgcctga tgctgaccgc ccaaacgcgg ataagcctga
     7261 atttcgcttc cgcctcccgg catacccgca ccgctcggac cgtggcagga catacacgcc
     7321 ggcacttttt tatcgctcaa accgccgcga tagattttcg cacccaattc gggattttcc
     7381 ttaggattgg cttcaccgga tttgggctgc tgtttggcat agaatgcgga tacgttcaaa
     7441 atatcctgat cgctcaaatt cattaccacc ggtttcatca cagctgccga accgtgggtg
     7501 cgtttaccgt cgcggatgcc gatagtttga tgatagatgt aagcagtatg ctgtgccgcc
     7561 aaacgcggat acatcgcaat gccgctgtta ccgtctgctg catggcaagc cgcacaaacc
     7621 gttgcggcaa cctgtttgcc tttttccacg tctgctttgg gagaggcgga aaccgcaccg
     7681 gcagccaaaa caaaggccaa taaagtcaat cgtttcatgg agtgctcctg attacagcat
     7741 tggataacgc aacaatgctc tttttatatt caaatacggg atttttgacc cgattaaaac
     7801 cgatgattct gtaaacgtgt tattctatac taaatttaca ttaaattacc actgtgtttc
     7861 acataaaacc aaccgcatat ttttgctgtc ggacaaacgg cggcggaaaa caaggatatg
     7921 cccatgaacc tttttcaaaa cgccaaattc ttcacgacgg tcaaccacct taaagacctg
     7981 cccgacaccc ctctcgaaat tgcctttgtc ggcaggagca atgccggaaa atccagtgcc
     8041 atcaataccc tgaccaacca tgtccgtctt gcctacgttt caaaaacacc cggacggacg
     8101 cagcatatca acttcttcga gctgcagaac ggcaatttta tggtcgattt gcccggctac
     8161 ggttatgccc aagtccccga agcagtacgc gcacattggg tcaatctgct cggcgactat
     8221 ctgcaacagc gcaaacagct tatcgggctg gttttgatta tggatgcccg ccatccttta
     8281 aaagaactcg acatccgtat gctggacttt ttccacacga ccggcagacc ggttcacatc
     8341 ctgctgtcaa aagccgacaa attatccaaa aacgaacaga taaaaaccct gtcccaagtc
     8401 aaaaaactgc tcaaacctta ttccgacagg caaaacatca gcgtacagct gttttccagc
     8461 ctgaaaaaac aaggtattga cgaggccaac cgaactgtcg gaagctggtt tgacgcagca
     8521 gatgccgccg cttcctctcc aaaggaaaac tgaccccaat tatacggaaa ccgtatttcc
     8581 cccacttgac cgaccgcaaa catttaaaaa attgccactg ccaaatctaa aatgccgtct
     8641 gaaagacttt tcagacggca ttttgcggag tctttaaaac agagaatcca actgctgctg
     8701 tttggaacca gtattactcg gaagcaccgg cgtttcctgc atatcttggc ggacttcgtc
     8761 atccgccgcc tgccgtccgc cttctgccgc gcccccgtca tcttcttttg cccgtcggga
     8821 aggttgcggc gcaataccgc tgttgtccag cgtcaagccc ggatcggtta ccatacgttc
     8881 cttcatatag tattcgccat tgctgctgac cacaccttca ggcattttca tccccttgcc
     8941 ctgctttcct ttcaacgcaa aacgcatata gtccacccaa accggcaccg caatcgtacc
     9001 gccgtagccg acacgcccca tactcttagg tttgtcgaag ccgatatata cggcagtaac
     9061 cacatcaggg ttaaaaccga caaaccacgc atccttattg tcattggtcg tacccgtttt
     9121 accggcaata tccgttcttc ccaacgcagc tgcccccctt gccgtaccga cacggaccac
     9181 atcctgcata atcttataca taatataggc attgcgcgga tcgattgcct gaggcgcatt
     9241 ttgcccggcc tccaaaggtt gcatttgggc gcgcaacctg ccgtctctgt cataaatctt
     9301 atcgattacg tgcgaagaaa ccctatatcc gccgttcgca aatacgctat atgcctccgc
     9361 cactttcaac ggcgttgtct cgcccgtacc taaagccata gacaggcttg ccggcagctc
     9421 ggacgacctg aagccgaaac gccggatata ctgttgcgcg taaccgacac cgatagacat
     9481 caaaatacgg atggaaacca tattcttgga agccgtcaga gcctgtctca aagtaatgta
     9541 gccggaatat ctgccgtctg aatttttagg tgtccaaacc gaaccgttcg gccctttccc
     9601 cggcagggaa atcggcgcat cgttaaccac tgtggacgcg gtcatcccct tagataatgc
     9661 cgccgaatag acaaacggct taaaggtcga acccggctgc cgcattgcct gaacggcacg
     9721 attgaatgtt ttgctgtgaa aatcataacc gccgaccagc gcgcgcacag ctccggtttt
     9781 tgcatccagc gaaaccaaag ccccctgcag caacggctct tgaaccaccg cccaacgccc
     9841 gccgttgttt ttgacacgga tgaccgcgcc cctgcggata cggtcctccc ccattttttc
     9901 attattgacc gcgcgggccg caaaacccaa ggcgcgcctg tcaagcgtaa cccgcctgcc
     9961 gccgggcagc tgtatgacga catttttctt tttagtcaca tccaacacaa cggcgggaac
    10021 cattttatcg acggtataga gtcccgacag atactggctg acagtctcct cgacatcttc
    10081 actcttactc aaatcgatat agttttccgc accgcggtag ctgctgccgc gatcgaaatt
    10141 ccgtagagcc ttgcgcaatg cctcggttgc caccttctga tgatcagcgc ggaccgtggt
    10201 ataaacctta aaaccctgcg tataggcatc ttcaccgtat ttctcataca gttcctgacg
    10261 caccatttcc gccacatata aagcactctg atcgattttc tgaacaaacc gctcgtaatg
    10321 cagttcctca ttcaacgcct gatcgcgctg ttgcacggta atcatcttct cctcgagcat
    10381 attgttcaaa atatacttct ggcgcaactt ggcacgttcc ggattaacaa tcggattata
    10441 ggcagacgga gccttgggca gtcccgcaag catggcggct tccgccaaag tcaaatctcg
    10501 gacattctta ttgaaataga tttgcgcggc agatgcaaaa ccataggcgc gctgaccgag
    10561 gtaaatctga ttgaaataca actcgaggat tttgtctttg cttaaagact gctcgatttt
    10621 ataggcaagc aacacctcat tgaatttgcg tgtgaacgtt ttttcactgc tcaaataaaa
    10681 atttttcgcc acctgctgcg taatcgtact cgcacccgac tgcacgctgc cggacacgac
    10741 attgccgacg gcagcgcggg caacacccca aacatccacc ccccaatgcc ggtaaaagcg
    10801 tttatcctcg gcggcgataa ccgcattccg caacacctct gggaaatcgc cgatttttgt
    10861 aaattcgcgc cgctgctccc catacatacc gatgacttcc ccatccgccg aataaatagt
    10921 caacggcatt ttaggctggt aatgctgcaa agaatccaaa gacggcagtt tcggatacgt
    10981 taccaaaata gcaatggcaa ccaaacccac tccaaataca caaaacccaa aaaccaaacc
    11041 aaaacaagtc gttaaaatct ttttaatcat agctgaataa taatttacca ttattggtat
    11101 taaataaagt aaaatagcaa ccgatttcta caaagcacgg tttcaatgtg caaagaacaa
    11161 ggaatccatt acggataccg aaacggttac tcactgtaca aataaagcag gaactttcat
    11221 catgcgcttg tttaaaagct tgaaaaaccc taaaaaaaca gatgccaagc tccctaaaaa
    11281 atcttcggga ctcaataacc gcgcggcaat cggcatcgat atcgaccagc attccatcaa
    11341 aatggtccaa ttgtcaggac gtagtttaaa ccaaattcaa ttggaaaaat acgtcattgc
    11401 caaattacca aagaatatca ttcaaggcaa taaagtccaa aattacgatc aacttgttac
    11461 atatttgcaa caagcctatg ccaaactggg tacgtcgtgc aaaaacatca tcgcgtccgt
    11521 cccgcaaaat ctggcaacca tcgaacaatt gacctacaca gacaaagatg cagaattaga
    11581 cctgcagggg ttcgtggagt cctccatctc cgaagtcagc tcgatatcgc tcgaagaagc
    11641 caattacgac tatcaggtct tgtcccaatc ggccgccggc gaagctgtgt tggccgtcgc
    11701 atcgagaaag gatgaaatcg aacccctgat tgacgcattc aacgccgccg gtatgaaatt
    11761 atccgcgctt gatgtggaca ttttcggaca atacaacgcc tacgcgctat ggataaacca
    11821 tttcgccccc gagcttgcag ccgaaaaagt cgccattttc ggcgtatatg ccgcacagac
    11881 ctacgccttg gtcatccaag acggaaaaat cctatacaaa caggaaacct ccgtcagcga
    11941 agaacagctc aaccaactca tccagcgcac ctatcaggta acagaagaaa aagcggaaga
    12001 aatcatcaac tccccgcaaa aaccttccga ttaccaagaa agcgtggcaa actatttcaa
    12061 ccagcagatt acccaagaaa tacaaagggt cttgcagttt tattacacca cgcagaccgc
    12121 agacgatatg accgacatca agcatatcct gctgaccggg gaagcggcgc gccaggaagg
    12181 catcgcccaa accgtcgcct cacaaaccaa tgcagatgta caatgcgtcc atcccgcgcg
    12241 ttattttgcg gacaacctca aaacagacaa acaacaattc gaacttgatg cgccgacact
    12301 gaccagggcg ttcggtttgg cggtacgggg attataatta tgaacaattt aatcaaaatc
    12361 aacctcctcc cctacaggga agagatgaac aagcgcaaac agcagcagtt taaaacgctg
    12421 atgtacggtg ccgtgctgac gggcgttgcc gccgttgcgg caacctacct gtttatcgac
    12481 aatatgatca ataaccagtc ggaaagaaac acgctgctgg aaacctccat cgcacacttg
    12541 gataccgagc tgtcggaaat acaaaagctc aaacaggaaa aagatgcctt cctgattaag
    12601 aaaaacaaag tcgaggagct ccagctcaaa cgcctccaag ccgcaaaaat cctcgacagc
    12661 ctgaatgagg ccgtccccgg aagcacctac ctgacctcgc tggatgccgt taccgccgac
    12721 tcttatcggc tcagcggcag gacatccagc gacaaccgcg ttgccgccat gatgagggcg
    12781 atgcccaata ccggcatatt caagcaaccc gaattgttaa gcatcaagaa aaacaattcg
    12841 catcaagaat ttacccttca ggcaacatta caacccatcg taaaggcggc cgaatccaaa
    12901 gagaatccgg cttcgggaaa cgcacaggag gcaaactgaa tggcttctaa atcatctaaa
    12961 accaacttgg atctcaacaa ccttcacctg ctcaaccttc ctgccaggct ttttatcgcc
    13021 ctgctggccg ttgccgccgt gctggggctc ggttatgccg gattgttcaa aagccagatg
    13081 gaatcccttg aggaatacga agcaaaagaa accgaactga aaaacaccta caaacagaaa
    13141 agtatcgacg cggccagcct gaacaacctg agggacgaac ttgcctcaat ccgctctgcc
    13201 ttcgatatca tgttgaaaca gctgccgaca gatgcagaaa ttcccaatct ggttcaagag
    13261 cttcatcagg caggttcgag caacggcctg cgcttggaca gcgttatgcc ccaacctccc
    13321 gtagatgacg gccccatcaa aagattaccc tattccattt ccattaccgg aaattacgaa
    13381 cagatcagcc aatttacccg cgatgtcggc agcctctccc gaatcattac ccttgagtcg
    13441 ctgaaaatcg cccaatctcc ggaaaacggc ggcaatcctg acggcaagag cagcatcctg
    13501 aacctcagtg ccattgccac cacctaccaa gcaaaatccg tagaagagct tgccgcagaa
    13561 gcggcacaaa atgccgagca aaaataactt acgttaggga aaccatgaaa cactatgcct
    13621 tactcatcag ctttctggct ctctccgcgt gttcccaagg ttctgaggac ctaaacgaat
    13681 ggatggcaca aacgcgacgc gaagccaaag cagaaatcat acctttccaa gcacctaccc
    13741 tgccggttgc gccggtatac agcccgccgc agcttacagg gccgaacgca ttcgacttcc
    13801 gccgcatgga aaccgacaaa aaaggggaaa atgcccccga caccaagcgt attaaagaaa
    13861 cgctggaaaa attcagtttg gaaaatatgc gttatgtcgg cattttgaag tctggacaga
    13921 aagtctccgg cttcatcgag gctgaaggtt atgtctacac tgtcggtgtc ggcaactatt
    13981 tgggacaaaa ctacggtaga atcgaaagca ttaccgacga cagcatcgtc ctgaacgagc
    14041 tgatagaaga cagcacgggc aactgggttt cccgtaaagc agaactgctg ttgaattctt
    14101 ccgacaaaaa caccgaacaa gcggcagcac ctgccgcaga acaaaattaa gaagaggatt
    14161 actccattat gaataccaaa ctgacaaaaa tcatttccgg tctctttgtc gcaaccgccg
    14221 cctttcagac agcatcggca ggaaacatta cagacatcaa agtttcctcc ctgcccaaca
    14281 aacagaaaat cgtcaaagtc agctttgaca aagagattgt caacccgacc ggcttcgtaa
    14341 cctcctcacc ggcccgcatc gccttggact ttgaacaaac cggcatttcc atggatcaac
    14401 aggtactcga atatgccgat cccctgttga gcaaaatcag tgccgcacaa aacagcagcc
    14461 gtgcgcgtct ggttctgaat ctgaacaaac cgggccaata caataccgaa gtacgcggga
    14521 acaaagtttg gatattcatt aacgaatcgg acgataccgt gtccgccccc gcacgccccg
    14581 ccgtaaaagc cgcgcctgcc gcaccggcaa aacaacaggc taccgcaccg tctaccaagt
    14641 ccgcagtatc cgtatccaaa ccctttaccc cggcaaaaca acaggctgcc gcaccgttta
    14701 ccgagtccgt agtatccgta tccgcaccgt tcagcccggc aaaacaacag gcggcggcat
    14761 cagcaaaaca acagacggca gcaccagcaa aacaacaggc ggcagcacca gcaaaacaaa
    14821 ccaatatcga tttccgcaaa gacggcaaaa atgccggcat tatcgaattg gctgcattgg
    14881 gctttgccgg gcagcccgac atcagccaac agcacgacca catcatcgtt acgctgaaaa
    14941 accataccct gccgaccacg ctccaacgca gtttggatgt ggcagacttt aaaacaccgg
    15001 ttcaaaaggt tacgctgaaa cgcctcaata acgacaccca gctgattatc acaacagccg
    15061 gcaactggga actcgtcaac aaatccgccg cgcccggata ctttaccttc caagtcctgc
    15121 cgaaaaaaca aaacctcgag tcaggcggcg tgaacaatgc gcccaaaacc ttcacaggcc
    15181 ggaaaatctc ccttgacttc caagatgtcg aaatccgcac catcctgcag attttggcaa
    15241 aagaatccgg gatgaacatt gttgccagcg actccgtcaa cggcaaaatg accctctccc
    15301 tcaaagacgt accttgggat caggctttgg atttggttat gcaggcacgc aacctcgata
    15361 tgcgccagca agggaacatc gtcaacatcg cgccccgcga cgagctgctt gccaaagaca
    15421 aagccttctt acaggcggaa aaagacattg ccgatctggg cgcgctgtat tcacaaaact
    15481 tccaattgaa atacaaaaat gtggaagaat tccgcagcat cctgcgtttg gacaatgccg
    15541 acacgaccgg aaaccgcaat acgcttgtca gcggcagggg cagcgtgctg atcgatcccg
    15601 ccaccaatac cctgattgtt accgataccc gcagcgtcat cgaaaaattc cgcaaactga
    15661 ttgacgaatt ggacgtaccc gcgcaacaag tgatgattga ggcgcgtatc gtcgaagcgg
    15721 cagacggctt ctcgcgcgat ttgggcgtta aattcggcgc gacaggcaag aaaaagctga
    15781 aaaatgatac aagcgcattc ggctgggggg taaactccgg cttcggcggc gacgataaat
    15841 gggggggcga aaccaaaatc aacctgccga ttaccgctgc cgcaaacagc atttcgctgg
    15901 tgcgcgcgat ttcctccggt gccttgaatt tggaattgtc cgcatccgaa tcgctttcaa
    15961 aaaccaaaac gcttgccaat ccgcgcgtgc tgacccaaaa ccgcaaagag gccaaaatcg
    16021 aatctggtta cgaaattcct ttcaccgtaa cctcaatcgc gaacggcggc agcagcacga
    16081 acacggaact caaaaaagcc gtcttggggc tgaccgttac gccgaacatc acgcccgacg
    16141 gccaaatcat tatgaccgtc aaaatcaaca aggactcgcc tgcgcaatgt gcctccggta
    16201 atcagacgat tctgtgtatt tcgaccaaaa acctgaatac gcaggctatg gttgaaaacg
    16261 gcggcacatt gattgtcggc ggtatttatg aagaagacaa cggtaatacg ctgaccaaag
    16321 tccccctgtt gggcgacatc cccgttatcg gcaacctctt taaaacacgc gggaaaaaaa
    16381 ccgaccgccg cgaactgctg attttcatta ccccgaggat tatgggtacg gccggcaaca
    16441 gcctgcgcta ttgatgcgtc aaaataaggg catatgtttt acggcatatg ccctttcttt
    16501 atgctttttg ccgcgaccga aatgccgtca ttcccgcgca ggcgggaatc cagtccgttc
    16561 agtttcggtc atttctgata aattcctgtt gcttttcatt tctggattcc cacttttgtg
    16621 ggaatgacgg cggaaggggt aaatcctcgc aatccaaagc ctcgtcattt ccacaaaaaa
    16681 cagcaacccg gaacagcaac ttaaaacccc gtcattcccg cgcaggcagg aatccaactt
    16741 gtccggttcc ggttgttttt cgtctcgtaa cttttgagcc gtcattcccg cgcaggcggg
    16801 aatctaggtc tgtcggttca ggaacttatc ggataaaacg gtttctccaa ccctgcgttc
    16861 tagattccca ctttcgtggg aatgacggga tatgggtttc cgtgcggacg tgttcggatt
    16921 tccgcctgcg cgggaatgac ggcgacagat gcccaacggt ctttatagtg gattaacaaa
    16981 aatcaggaca aggcgacg
//
LOCUS       DAXIFD010000021        16978 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.021, whole genome shotgun sequence.
ACCESSION   DAXIFD010000021 DAXIFD010000000
VERSION     DAXIFD010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16978
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.021"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..285)
                     /locus_tag="ACFOCN_000536"
     CDS             complement(<1..285)
                     /locus_tag="ACFOCN_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969733.1"
                     /translation="MRHKTGVAMAFEQMGQFVDDDVLSGADTRTAPLGGNTLMCRFLI
                     AFLRISTFRLPIFILSSVFRVPDNQLKHCINIQPFFINEQLKLDFKAFLLH"
     gene            247..354
                     /locus_tag="ACFOCN_000537"
     CDS             247..354
                     /locus_tag="ACFOCN_000537"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HFC6969734.1"
                     /translation="MLERHRNARFMAHMDNFLPNWQSIKQQLNALELGV"
     gene            complement(423..752)
                     /locus_tag="ACFOCN_000538"
     CDS             complement(423..752)
                     /locus_tag="ACFOCN_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969735.1"
                     /translation="MLSQSQWLDAVKGRLRVRSDYALSKRWAVTPSEVSQYRRNRLRF
                     PFAVVLDIADVMDIDPIEIIAGLEYRRCREKDMERVKGAYFKAHCAHFVYPNNPGFFR
                     RKKRFFG"
     gene            complement(834..1151)
                     /locus_tag="ACFOCN_000539"
     CDS             complement(834..1151)
                     /locus_tag="ACFOCN_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969736.1"
                     /translation="MKKALKWIAVFIAFSVWSFGIFLYGFNNGTEAGMQCAQIKGNGL
                     CAMSFDGSASKIEFSDLNEKNDKQTLCFQSLWEFNDECEKKESNSIYYIDLPENNPKD
                     IKQ"
     gene            complement(1153..1341)
                     /locus_tag="ACFOCN_000540"
     CDS             complement(1153..1341)
                     /locus_tag="ACFOCN_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969737.1"
                     /translation="MKALRIKEEQEESIRRLAINANKKLIQLGREPLRDSELAHILLN
                     EAIRCAKIDDDGKITIGN"
     gene            1798..2970
                     /locus_tag="ACFOCN_000541"
     CDS             1798..2970
                     /locus_tag="ACFOCN_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6969738.1"
                     /translation="MEFSRDTNSCIQPQEYERYEKVVMDAKGNLKVVPLRRGKGDSAF
                     IDTISFTFHESSVAKFFLITREFFPIKGVSDRDVLVRFSDILEWIFGFGISSHQPVGK
                     GRFYESRWQMERDGVLYGQVYIGGQQETILVEMTGKGCAVAEEGWEERLYRFLTADTT
                     YNAKITRCDVAKDFYENEISPDTAWEMYEQGKFDKRGKRPLVGKLGDDWLNPTEKGKT
                     LTIGSKHSSVFCRIYDKAKEQGDTSGVFWCRFEQQYMGRNCYLSLDILLSPGSFWGGA
                     FEICASLQQKGVTEHRCVSAKKRLELSIERSKQVASQQVGRAINMMVFMGMSDYEIVD
                     YLRRKDGAMPHRLNPASFMIKEKRACEYIHDYEKEIEIIKFDEYGMVLDSLGDLND"
     gene            2963..3247
                     /locus_tag="ACFOCN_000542"
     CDS             2963..3247
                     /locus_tag="ACFOCN_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969739.1"
                     /translation="MIRVREKQYPCLVLDDYFQSGLITRRMYFSLDKFHHIPVSGAVI
                     YKDDPIYFRRLEKVLKANAKELDCYAYRVLADGRLFLVDRLITDFFDERK"
     gene            3251..3553
                     /locus_tag="ACFOCN_000543"
     CDS             3251..3553
                     /locus_tag="ACFOCN_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969740.1"
                     /translation="MKMIARVTGMKRSKGITEKGQSYDSTKLFIEIQFPESQDMCGYA
                     SQEFAYGTYENYEKLLASGVKMPFKAEIDFDFVTNGKAVKQIVTNVVPVFEKPKNS"
     gene            3725..3952
                     /locus_tag="ACFOCN_000544"
     CDS             3725..3952
                     /locus_tag="ACFOCN_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HFC6969741.1"
                     /translation="MFKSIKTNVRKAGAVLALATLSAPTWADGIEGVANGIVTEINKV
                     VPVVSSVGVALLSVYVLVKAFRLVSGFVAGR"
     gene            3962..4264
                     /locus_tag="ACFOCN_000545"
     CDS             3962..4264
                     /locus_tag="ACFOCN_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969742.1"
                     /translation="MMGYRVGMQCFSKKEQAEDYSVSKIVPVISPDGKLYAPYKSGGN
                     WYFEGYRIDLSFPQCSQESQFAQGAMLASSFLILFVIVWAFKTVGNMIKGSFANDG"
     gene            4333..4617
                     /locus_tag="ACFOCN_000546"
     CDS             4333..4617
                     /locus_tag="ACFOCN_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020424404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969743.1"
                     /translation="MKFKRMAVAFVMSAFFVPAFSEDIEIHRVEEGFKKLNMTGKLYE
                     SVSNAPFGTVFPMRSRDGEIQYTMHKLGCFFNTCYFNVNKVPDNLKKKKT"
     gene            4614..5603
                     /locus_tag="ACFOCN_000547"
     CDS             4614..5603
                     /locus_tag="ACFOCN_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor TspB C-terminal domain-related
                     protein"
                     /protein_id="HFC6969744.1"
                     /translation="MTVFDISDLNLKDPDQQDADDLGMTLADYKKMIQEDNDYGRIWQ
                     KIQLKKAEQLQKEKEEAVKRKRKRKIFSDYRGHRFKSVKELCYDVYKGLTYGRGWNGS
                     YQHIEVKGVDSGLYENNAELGRCNAVWPDGKVAHTLDYSVLYEDIPEGEKPEEEKKEP
                     EKDHPKPVEKPDSSNPKPSENPNVGTLGGGASPAVGNAPGGGSLGASDGGGSTGAGNG
                     GNNGSTAQGSGKGKGDGEDSEKMPDVPKYGEPDWGSLKSDGRFGSYATATAFSTGGHC
                     INDIRLDMGQFGSHTLQMGFLCDVLKKLRYVFIAMAYLYSAILVFKTVNSLKG"
     gene            5606..5896
                     /locus_tag="ACFOCN_000548"
     CDS             5606..5896
                     /locus_tag="ACFOCN_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HFC6969745.1"
                     /translation="MPRLIVALFMALVPMLKDLFFKILAGLGASFVSYEALSLSTDAI
                     LKYFQNAYGNIPPDILNMFALAGIPEALNIIFGGFSFSFGIWSSYRVLKFLK"
     gene            5907..7010
                     /locus_tag="ACFOCN_000549"
     CDS             5907..7010
                     /locus_tag="ACFOCN_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zonular occludens toxin domain-containing
                     protein"
                     /protein_id="HFC6969746.1"
                     /translation="MITLITGVPGSGKTLSVVSDLAKKINNEWKDRKIFIEGIPELTI
                     ETTPIPEGHSINDMHVWLQYPENNGSVVIIDEAQNVFPPRSPAVKAPPLVEWLHVHRH
                     SGIDIILITQMPQRIDKHVRDLVGAHYHIHKTPLGIFMRYFWDYCANNPRSEFANARP
                     EVYKLDKKAFGLYKSAEIHTKVKTPKSRVLYIIPIALVLFALFFYLGYKLLLGLGNKD
                     GTEEGEAKTQTIVSEEQLEQVRGMAYKASGEAGRNIGNQLGSDKENQNLTKEMLEPTI
                     DGHPESKPIYNGVRQVRQMEFPVACVKSSNSCNCYSGQATILKEIDKKTCIDYVDNGM
                     PFNPYKEEQREIKIDTDEQKPLKKQVLVMDAAK"
     gene            complement(7491..7907)
                     /locus_tag="ACFOCN_000550"
     CDS             complement(7491..7907)
                     /locus_tag="ACFOCN_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969747.1"
                     /translation="MTEEMMKKQRHILCVGCLYIILKVNVFPNTGWMEASKGMQGMSF
                     STFGYADAPGYTFSRIGHTLIFLLGKTTGTRTTVSDSSHNDKLRLFLRILQVLAKVSV
                     ATRMSYFFRRISVRYHSVSGFPVLKNSSEKRKRGYS"
     gene            complement(7940..8455)
                     /locus_tag="ACFOCN_000551"
     CDS             complement(7940..8455)
                     /locus_tag="ACFOCN_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969748.1"
                     /translation="MKSKLPLILINFSLISSPLGANAAKIYTCTINGETVYTTKPSKS
                     CHSTDLPPIGNYSSERYIPPQTPEPVSSPSNGGQVVKYKAPVKTVSKPAKSNTPPPQQ
                     APSNNSRRSILETELSNERKALVEAQKMLSQARLAKGGNINHQEINALQSNVLDRQQN
                     IQALQRELGRM"
     gene            complement(8521..8934)
                     /locus_tag="ACFOCN_000552"
     CDS             complement(8521..8934)
                     /locus_tag="ACFOCN_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HFC6969749.1"
                     /translation="MPSDKEARAGCLSLPANNGIIRALSPPFTGINIRLFAALGLLSL
                     SGAAAQASVYHCNSNGKSVYTSAPAGSCADADLPKISSHQGGGYRLKIKKLSQEAKIH
                     IESKKKNKKPAGKKNRQAAKAPKENQKQPTEKKSP"
     gene            complement(8921..10843)
                     /locus_tag="ACFOCN_000553"
     CDS             complement(8921..10843)
                     /locus_tag="ACFOCN_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6969750.1"
                     /translation="MIEIKNLTLQRGLKVLLDKANATVNPGQRVGLIGKNGTGKSSLF
                     ALIKGKITQDGGDVSIPKNWRLASVSQETPDLDISALDYVLQGDAELQAFQTALRQAE
                     AQNDGMKQAEYHAKLEEIDAYTAPARAAKLLNGLGFSQEEHSRPVKSFSGGWRMRLNL
                     AQALICRADLLLLDEPTNHLDLETVLWLENHLASLPCTQIIISHDRDFLNAATTQTIE
                     LSQQKLTQYGGNYDFYQNERAQRLAQQQAAYVKQQAQIKHLQSFIDRFKAKATKAVQA
                     QSRMKALAKLERVAPAHLDSEFSFEFYHPDHLPNPLLKLEHADLGYEGKTVLHDITLS
                     LESGARYGLLGVNGSGKSTFIKALAGKIDLLSGSIVRSEKLNIGYFAQHQLDTIRADQ
                     NPVWHIQQLSPKVREQEIRNFLGGFNFVGDMALQKTEPFSGGEKARLALAMIIWQKPN
                     LLLLDEPTNHLDLDMRHALTLALQSFQGALIIVSHDRSLLEATTDSFLLIDKGRLKNF
                     DGDLNDYRQWRLAQENAAAAPAASAQSQSRKDTKRIEAQIRQEKARRGKPIQQKIDRA
                     EKEMAQLSEIQTACEAFLAQEDAYLEANKEKLQNTLSQLAKVKTQLAQIEEVWLACQE
                     ELERIETEIEKQFAER"
     gene            complement(10920..11291)
                     /locus_tag="ACFOCN_000554"
     CDS             complement(10920..11291)
                     /locus_tag="ACFOCN_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH938/NDUFAF3 family protein"
                     /protein_id="HFC6969751.1"
                     /translation="MLFEENPIDEHFAEYDRRTGEIRLSGRHFNKPVLLHRDSAGLSK
                     WQSLSELTPDNLLSDVKADDYPEILIIGTGAAQEFIHPKIMADFSRIGIGVECMNTDS
                     AFRTLVFLHSEGRRAWAWLQP"
     gene            11489..12796
                     /locus_tag="ACFOCN_000555"
     CDS             11489..12796
                     /locus_tag="ACFOCN_000555"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HFC6969752.1"
                     /translation="MKPVNIGLLGLGTVGGGTAAVLRDNAEEISRRLGREVRISAVCD
                     LSEEKARQICPSAAFVKDPFELVARKDVDVVVELFGGTGIAKDAVLKAIENGKHIVTA
                     NKKLLAEYGNEIFPLAEEKNVMVQFEAAVAGGIPIIKALREGLAANRIKSIAGIINGT
                     SNFILSEMREKGSAFADVLKEAQALGYAEADPTFDIEGHDAGHKITIMSALAFGTPMN
                     FSACYLEGISKLDSRDIKYAEELGYRIKLLGITRKTGKGIELRVHPTLIPESRLLANV
                     NGVMNAVRVNADMVGETLYYGAGAGALPTASAVVADIIDIARLVEADTAHRVPHLAFQ
                     PAQVQAQTILPMDEITSSYYLRVQAKDEPGTLGQIAALLAQENVSIEALIQKGVIDQT
                     TAEIVILTHSTVEKHIKSAIAAIEALDCVEKPITMIRMESLHD"
     gene            12789..13223
                     /locus_tag="ACFOCN_000556"
     CDS             12789..13223
                     /locus_tag="ACFOCN_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969753.1"
                     /translation="MTEPKHEMPTEEQVAARKKAKAKIRTIRIWAWVILALLASTALL
                     SQCAMSKPQAKQKIVESCVKNIPFAEKWQNDLRARGLDSNNTRLTVDYCKCMWEQPLD
                     RLSEKQIRSFGKLGAQEQLDLLGGANAFEARDKQCVADLKSE"
     gene            complement(13282..13551)
                     /locus_tag="ACFOCN_000557"
     CDS             complement(13282..13551)
                     /locus_tag="ACFOCN_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HFC6969754.1"
                     /translation="MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTL
                     VGFGTFYVGERAERQGRNPKTGEPLTIAAAKTPKFRAGKALKDAL"
     gene            complement(13733..16183)
                     /gene="lon"
                     /locus_tag="ACFOCN_000558"
     CDS             complement(13733..16183)
                     /gene="lon"
                     /locus_tag="ACFOCN_000558"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HFC6969755.1"
                     /translation="MTQKEKHFEEYAALATLPLRDVVVYPHMVLPLFVGRPKSIAALE
                     NAITREEPVFLLAQTDAALEEPVAADLYQTGTVAQVLQVLKLPDGTVKVLVEGLYRGR
                     VLSIEDTGGLFVSHIETVVEEDTGGNTDLEAVRRTLLAQFEQYAKLNKKIPAEIIGSI
                     NGIAENSRLTDTVAAHLQLKLAQRQQILEIPEIGKRMEFLLAQLESELDIMQAEKRIR
                     GRVKRQMEKSQREYYLNEQIKAIHKELGEEDENGELDALEAGIKKAGMSKEAEEKCLS
                     ELKKLKMMPPMSAESTVVRNYIDTLLELPWKKKSRVSKDIAKAGLVLDTDHYGLEKVK
                     ERILEYLAVQKRMDKLKGPILCLVGPPGVGKTSLGESIAKATGRKYVRMALGGVRDES
                     EIRGHRRTYIGSMPGKILQNMAKAGVKNPLFLLDEIDKLGSDFRGDPASALLEVLDPE
                     QNNKFADHYAEVDYDLSDVMFIATSNSLNIPTPLLDRMEIIRLSGYTEDEKINIAMQY
                     LVPKQMKRNGVKEGELAIEESAVRDIIRYYTREAGVRSLDREIAKICRKVVMQITLDE
                     DSKTKKTGKAKPRAVKVNEKNLHDYLGVRRFDYGVAESENRIGQVTGLAWTEVGGELL
                     TVEAAALPGKGVIQCTGQLGDVMKESVSAAWSVVRSRAESVGLAPDFYEKKDIHIHVP
                     EGATPKDGPSAGIAMTLAAVSAFTKIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAL
                     RGGIKHVLIPKDNLKDLEEIPENVKTGLTIHPVKWIDEVLALGLESQPEPWAEPSGAE
                     AAAESASKPKPRSRATKH"
     gene            16434..>16978
                     /locus_tag="ACFOCN_000559"
     CDS             16434..>16978
                     /locus_tag="ACFOCN_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6969756.1"
                     /translation="MSSFIFPDNGFEWRNESLQKPPKGWHYVRESGANGILKAAYQNI
                     ATVWQGDFHNAKQVLSAMKKKVRKPAAVRSDADIAALFHAHRMKQAQQSRILNMLAVE
                     IRPGFVLDNKRAPDIRAALLDVYGEADGKPFFLPLNLLLGFMGAHEWHKKGVAVPQLG
                     GSIHVPFGVFSPLRGEYLDLLA"
BASE COUNT         4290 a         3811 c         4238 g         4639 t
ORIGIN      
        1 atgaagcaaa aacgccttaa agtccaactt aagctgctca ttgatgaaaa agggctggat
       61 attgatgcag tgtttgagct gattatcagg cacgcggaat acggagctta atatgaaaat
      121 cggcaatcta aatgtagaaa tccgcaggaa agcgattaaa aacctgcaca tcagcgtgtt
      181 gccgccaagt ggcgcggttc gggtgtccgc accgcttaat acgtcgtcgt ccacgaactg
      241 acccatttgc tcgaacgcca tcgcaacgcc cgttttatgg cgcatatgga caactttctc
      301 ccaaactggc aaagcatcaa acaacagctt aatgccttgg agttaggggt gtaacgcaag
      361 gacgaatccg aagcagaccg tttgcacaaa tatataattt aacataatat acattatgcg
      421 aactagccga aaaaccgttt tttacggcgg aaaaagcccg gattgttcgg atagacaaaa
      481 tgcgcgcaat gggctttgaa atacgcccct ttgacgcgct ccatgtcctt ttccctgcac
      541 cgcctatatt ccaaacctgc aataatttca atcggatcta tatccatcac gtcggcaata
      601 tccaagacga cggcaaaagg aaaccgcaac cggttgcgcc gatattggga cacctcggac
      661 ggcgtaaccg cccatctttt ggaaagcgcg taatcggaac gcacccgtaa ccgccctttg
      721 acggcatcca gccattggga ttgtgaaagc ataataaaat caaagccttt gcgaaaacct
      781 gtaatttaat gatacagatt tttgcaaagg ctctctattt gagcatatgc tccttattgt
      841 tttatgtctt tgggattgtt ttcgggtagg tctatataat atatagaatt agattctttt
      901 ttttcgcatt catcgttaaa ttcccataat gattgaaagc aaagggtttg tttatcattt
      961 ttctcattaa ggtctgaaaa ttcgattttt gaagccgaac catcaaagga cattgcacaa
     1021 agtccattac ctttgatttg ggcgcattgc attcctgctt cagtcccgtt attgaatccg
     1081 tacagaaata tgccgaatga ccaaacggaa aaagcgataa agacggcaat ccatttcagg
     1141 gcttttttca tatcagttac ctatagtgat ttttccgtcg tcgtcgattt tggcgcatcg
     1201 gattgcctcg tttaaaagta tgtgtgcaag ctcgctgtcc ctaagcggtt cgcggccaag
     1261 ctgaatgagc ttcttgttgg cattgatggc aagccttctg atgctctctt cttgctcttc
     1321 tttgattcgt agtgccttca ttttttcaat ttcctttcat atttcaaatt taaaacatta
     1381 caagcagtgt taacaagtaa tttgtgattg acttaacaag ttaactggtt aataattact
     1441 caaaatgtta acgcattaac tcattaactc gaatctgttg taaaagtgca aatgggtcta
     1501 aaaatgaaca aacgacgagc agaaataata tttgtaaacg gcaaatggct ggttaattgt
     1561 tattcatacg gaatttttgt aacagaagcc gaatttgata cgcttttttt ggctttgggt
     1621 tctgcccgcc aatatatcga atcgggcgaa attgtttctt tgtccgtttg cgatgttttt
     1681 ttagctttgg gcagtcgaga atcacgccgc tcgttcggct tgtgtaactg atgtttttat
     1741 gccccccctt atctaacagg gggggtcgaa aatcgaaggg cgacgggaat ctaaaacatg
     1801 gaattttcaa gagacacaaa ttcatgcatt caacctcaag agtacgagcg ttatgaaaag
     1861 gttgttatgg atgcaaaggg aaatttaaag gttgttccct taaggcgtgg caaaggcgat
     1921 tccgcattta tagacacaat cagctttacg tttcatgaaa gttctgttgc aaagtttttt
     1981 ttaataacaa gggaattttt tccgattaaa ggcgtatcag atagggatgt attagttcgt
     2041 ttttcagaca ttcttgaatg gatattcggt ttcggaattt cgtcgcatca acctgtcggc
     2101 aaaggtcggt tttatgagtc gcgctggcag atggaaagag acggagtttt gtacggtcag
     2161 gtttacatcg gtggacaaca ggaaaccata cttgtagaga tgacgggtaa aggttgtgca
     2221 gttgcggagg aaggctggga agaacgtttg tataggtttt taacggcgga tacgacttat
     2281 aacgcaaaaa taacccgttg cgacgttgca aaagactttt acgaaaatga aatctcgcct
     2341 gataccgctt gggaaatgta cgaacagggc aagtttgata aacgcgggaa acgtccgctt
     2401 gtcggcaagc tcggggatga ctggcttaac cctactgaaa aaggcaaaac ccttaccatc
     2461 ggttctaaac attcttcggt tttttgccgt atctatgaca aagcaaaaga acagggagat
     2521 acaagcggcg ttttttggtg ccgttttgaa cagcagtata tgggcagaaa ctgttatttg
     2581 agtttagata ttttgttatc gccggggtct ttttggggcg gcgcgtttga gatttgcgct
     2641 tcattgcaac aaaaaggcgt gacggagcat aggtgtgtaa gtgccaaaaa aagattggaa
     2701 ttgagcattg aacgctctaa gcaggttgca tcgcaacagg tcgggcgcgc cataaatatg
     2761 atggttttta tgggtatgtc tgattacgaa atcgttgatt atctgcgccg gaaagatggt
     2821 gcaatgcccc atcgtttaaa tcccgcatca ttcatgatta aagaaaaacg cgcttgcgaa
     2881 tatatccatg attatgaaaa agaaattgaa attattaaat ttgatgagta cggaatggtt
     2941 ttagacagtt tgggagattt aaatgattag ggtaagagaa aagcaatatc cttgtttggt
     3001 tttagatgat tattttcaaa gcggcttaat tactcggcgt atgtatttct ctttggacaa
     3061 attccatcat ataccagtat ctggagcggt tatttataag gatgacccta tatatttcag
     3121 acgcttggaa aaagttttaa aagctaatgc taaagaactt gattgttatg cgtatagggt
     3181 tttagcagat ggaaggttgt ttttagtaga taggttaata accgattttt ttgacgaaag
     3241 gaaatagcaa atgaagatga ttgcacgtgt aaccggtatg aaacgaagca aaggcattac
     3301 ggaaaagggt caatcttatg attctacgaa gctctttatt gagattcagt ttcctgaaag
     3361 ccaagatatg tgcggatatg ctagccaaga gttcgcatac ggcacatatg aaaactatga
     3421 aaaactgctt gcttcaggcg taaaaatgcc gttcaaggca gaaattgatt ttgatttcgt
     3481 caccaacggc aaagcagtaa aacagattgt aactaacgtt gtccctgttt ttgagaaacc
     3541 taaaaactca tgaaatatca cgtaagtgcg tggcttccgg ctgcttcaac aggcggatcg
     3601 ccgataattc agtaatttca ttttgacgat gaatcggaag attatgaaga actctactcc
     3661 gatgttccat tttaaggctg tgcggtttgc ctccgaaaac cgtaattttt aaaaaggaaa
     3721 ttttatgttt aaaagcatca aaacaaatgt tcgtaaagcg ggtgcggttt tagcactggc
     3781 taccctttcc gctccgactt gggcggacgg catcgaaggc gttgcaaacg gcatcgtaac
     3841 cgaaatcaat aaagttgttc cggtcgtttc aagcgtcggc gtcgccctgc tctccgttta
     3901 tgtgctggtt aaagcattcc gcctcgtctc cggctttgtt gctggtcgtt aaaaaggtgt
     3961 gatgatggga tacagggtag gaatgcagtg tttttccaaa aaagaacagg cagaggatta
     4021 ttctgtatcc aaaatcgtgc ccgttatatc tcccgatggg aaactgtacg cgccatataa
     4081 atcaggcgga aattggtatt ttgaaggcta tcggatagat ttgtctttcc cgcaatgctc
     4141 ccaagaatca cagtttgcac aaggggcaat gcttgcctct tcgttcctga ttttattcgt
     4201 gatcgtatgg gcatttaaaa cggtaggaaa catgattaaa ggaagttttg caaatgatgg
     4261 ttgatttcta ttttcttatt ggattttttg cagtgatttc attggtttat tttttcaaat
     4321 agggggtatt agatgaaatt taaaagaatg gcggtcgctt ttgtgatgtc cgcttttttt
     4381 gttcctgctt tttcggaaga tattgagatt catcgtgttg aagaaggttt taaaaagtta
     4441 aatatgactg ggaaattgta tgaatctgtt tcaaatgctc cttttggcac tgttttcccg
     4501 atgagaagta gggacggcga aatacaatac acaatgcata agttaggatg tttttttaat
     4561 acatgttatt ttaatgtgaa taaagtacct gataatttaa aaaaaaagaa gacatgacgg
     4621 tttttgacat atcagattta aatttaaaag accctgacca acaggatgcc gatgatttgg
     4681 gtatgacgct ggcggattat aagaagatga ttcaggagga taacgattac ggcaggattt
     4741 ggcagaaaat ccaattaaaa aaggcagaac aattacaaaa agaaaaagag gaagcggtaa
     4801 agaggaagcg gaaaaggaag attttttcag attatagggg gcatagattc aagtctgtca
     4861 aagaactctg ttatgacgtt tacaagggtt tgacttatgg acgtgggtgg aacggcagtt
     4921 accagcatat cgaagtaaaa ggcgttgatt ccggtttgta tgagaataat gcggaattgg
     4981 ggagatgtaa cgctgtttgg ccagatggca aagttgccca tactttagat tattccgtct
     5041 tgtatgaaga tatacccgaa ggggaaaagc ccgaagaaga aaaaaaagaa cccgaaaaag
     5101 accatccgaa gcccgtagaa aagcccgatt cgtccaatcc caagccgtct gaaaacccga
     5161 acgttgggac actggggggc ggtgcttccc ccgctgtcgg aaatgcgccg ggtggcggaa
     5221 gcctcggagc atccgacggc ggaggaagca caggcgcggg gaacggcggt aataacggtt
     5281 caacggcaca aggaagcggc aaaggcaaag gggacggcga agacagtgaa aaaatgcccg
     5341 atgttcccaa gtatggcgag cctgattggg gaagccttaa aagtgacgga cggtttggaa
     5401 gttatgcaac tgcaaccgcg ttctcaacgg gagggcattg cataaatgat ataaggttgg
     5461 atatgggaca gttcggcagc cacacgcttc aaatgggctt tctgtgcgat gtattgaaaa
     5521 agctgagata tgtttttata gccatggctt acctctattc cgcaatcttg gtttttaaaa
     5581 ccgtaaacag tttgaaaggt taaaaatgcc aagattgatt gtcgcattgt tcatggcatt
     5641 ggtgccgatg cttaaagact tgttttttaa aattctcgca ggtcttggcg cgtcgtttgt
     5701 ctcatatgag gcgttaagcc tttcaaccga tgccattttg aaatattttc aaaacgccta
     5761 tgggaatata ccgcccgata ttttaaatat gtttgcactg gcaggcattc ccgaagcatt
     5821 aaacatcata ttcggcggtt tctcgttctc gttcggcata tggtcttcct accgcgtttt
     5881 aaaattccta aaatgaaagg caaagaatga ttacattaat tacaggcgtt cccggttcgg
     5941 gcaaaacttt atccgtcgtt tcggacttgg cgaaaaagat aaataatgag tggaaagaca
     6001 ggaagatttt tattgaaggc attccggaat taacgataga aacaacgccc attcccgaag
     6061 gtcattccat taatgatatg cacgtttggc ttcaatatcc cgaaaataac ggctctgtcg
     6121 tcatcataga cgaagcgcaa aatgttttcc cgccgcgctc ccctgccgta aaagcaccgc
     6181 ctcttgtcga atggttgcac gttcacaggc attcgggcat agatattatc ctgataacgc
     6241 agatgcccca acgcatagat aagcacgtcc gcgatttggt aggggcgcat tatcatatcc
     6301 ataaaacccc gctgggcatt tttatgcgtt atttttggga ctattgtgcg aataatccaa
     6361 ggtcagagtt cgccaatgca cgccccgaag tctataagtt ggataaaaag gcgttcgggc
     6421 tttataaatc agcggaaatc catactaagg taaaaacccc gaaaagccgc gttttatata
     6481 tcatccccat cgcattggta ttgttcgccc tattctttta tttgggctac aagctattat
     6541 tggggctggg taataaggac ggaacagagg aaggagaagc taaaacgcaa acaatcgttt
     6601 cggaggaaca attagaacaa gtcaggggca tggcgtataa ggcatcgggc gaagccggaa
     6661 gaaatatagg caatcagttg ggctcggaca aagaaaatca gaatttgacg aaagagatgt
     6721 tagaacccac aatagacggt catcccgaat caaaaccgat ttataacggg gtcaggcagg
     6781 tcagacaaat ggagttcccc gttgcctgtg tcaaatcgtc aaattcatgc aactgctatt
     6841 cagggcaggc aaccatttta aaagagatag acaaaaaaac ctgtatcgat tacgtcgata
     6901 acggaatgcc gttcaatccg tataaagaag aacaaagaga aattaagata gataccgacg
     6961 aacagaaacc tttaaaaaaa caagtattag tgatggatgc ggcaaaatag aaaaccgccc
     7021 ttaatcgggc ggttatagtc gtgggttatt gacttatcag tatgataacg gctagaataa
     7081 gccgtatatc aatcgttata gtcaaaagca gtttaccaat tcgcaaagtg atctgcattt
     7141 tgatttatcc tgtaaagttt aaaaactagg caggaatgca aaaatcccct tgttgtcagc
     7201 ttggggattt ttgtttgtcc ccaccgctct tttaggtttc tcgcctctcg cgcctgaatc
     7261 tatgtcataa agttcctttc attcaaaata aaaatctttc ggtttcagcc cccgccctct
     7321 caggatggct tgagcggagt gaagggggtt aactgctaga atggctgttt tttttaaagt
     7381 gtctcagtct ggtatcgctt cgttcggggg ttgtaggtgc aggaaaatag ggcagaaaaa
     7441 aggaaaaggg ggaagctttg taaagattgg gcgcgctttt tgcccaatct ttacgaatac
     7501 ccccttttcc ttttttctga actgtttttc aataccggaa acccactaac ggagtgatac
     7561 cggactgaga tacgcctaaa aaaataagac attcgggtcg caacagaaac ctttgccaaa
     7621 acctgtaata ttcttagaaa aagacgtaac ttgtcattat gcgaactatc ggaaacagtt
     7681 gtacgtgtcc ctgtggtctt tccaagtagg aaaattaaag tatggccaat gcggctgaat
     7741 gtatagcccg gagcatccgc gtatccgaag gtactgaacg acatgccctg catccctttc
     7801 gacgcttcca tccagccggt attgggaaat acgttgacct tcaatataat atacaggcag
     7861 ccgacacaca ggatatgccg ctgctttttc atcatttctt ctgtcaaatc cttggaacgg
     7921 tcgatttgaa aacacggctt tacatacgcc ccagttccct ttgcagggct tgaatatttt
     7981 gctgcctgtc caatacattg ctttgtaatg catttatttc ttgatggttg atgttgccgc
     8041 cctttgccag acgtgcttgt gataacattt tttgggcttc aaccaatgct ttgcgttcgt
     8101 tgctcaattc tgtttcgaga atggagcgtc tgctgttgtt tgagggtgct tgttgcggcg
     8161 gcggcgtatt ggattttgcc ggcttggata ctgttttgac cggggcttta tatttgacaa
     8221 cctgtccgcc gtttgacggt gatgataccg gttcgggcgt ttggggcggg atatagcgtt
     8281 cgctgctgta gttgccgatt gggggcaaat cggttgagtg gcagcttttg gacggcttgg
     8341 tggtgtaaac ggtttctccg ttgattgtgc aggtgtagat tttggccgca ttcgcaccca
     8401 atgggcttga aatcagggaa aagttgatta ggattaaggg gagttttgat ttcataatgt
     8461 gcttgatttt cggataatca tttgattttt tggtattttt tataatgctt tcttggcgtt
     8521 ttacgggctt ttcttttcgg ttggttgctt ttgattttct ttcggggctt tggcagcctg
     8581 cctgttcttt ttcccggcag gttttttgtt tttcttttta ctttctatgt gtattttggc
     8641 ttcttgactg agttttttaa ttttcaggcg gtatccgcct ccctgatggc tgctgatttt
     8701 aggtaaatcc gcatcggcgc acgatcctgc tggggctgat gtatatacgc ttttgccatt
     8761 tgagttgcaa tggtatacgg aggcttgcgc cgccgcgccg gaaagggaca ggagacccaa
     8821 ggcggcaaaa agtctgatgt ttataccggt aaaaggcggt gataacgccc gaattatacc
     8881 gttattggca ggcaaagata agcaccctgc ccgcgcttct ttatcgctcg gcaaactgtt
     8941 tctcgatttc agtttcaatc cgttccaatt cttcttgaca agccagccaa acctcttcga
     9001 tttgggcaag ttgtgttttg acttttgcca gctgggataa ggtattttgc aatttttctt
     9061 tgtttgcttc aaggtaagcg tcttcttgtg ctaaaaatgc ttcacatgcc gtctgaattt
     9121 cggaaagctg cgccatttct ttttcggcac ggtctatttt ctgctgtatc ggcttgccgc
     9181 gtcgggcttt ttcctgacgg atttgcgctt cgatgcgctt ggtgtctttg cggctttggc
     9241 tttgtgcgga tgctgcgggt gcggcggcgg cgttttcctg tgccaaacgc cattggcggt
     9301 aatcgttcaa atcgccgtcg aagttcttca gacggccttt gtcgatcagg aggaagctgt
     9361 cggtagtcgc ttcaagcagg ctgcggtcgt gcgatacgat gattaaggcg ccttggaaac
     9421 tttgcagagc gagcgtcagg gcgtggcgca tatccaagtc cagatggttg gttggttcgt
     9481 caagcagcaa caggttcggc ttttgccaga taatcatggc aagggcaagg cgggcttttt
     9541 ctccgccgga aaaaggttcg gttttctgta acgccatatc gccaacaaaa ttgaagccgc
     9601 cgaggaaatt tcggatttct tgttcgcgta ctttgggaga aagctgctga atatgccaaa
     9661 cagggttttg gtcggcgcgg atggtgtcga gttggtgttg ggcaaaatag ccgatattga
     9721 gtttttcgga acggacgatg ctgccggaaa gcaaatcgat tttgcccgcc aaggctttga
     9781 taaaggtaga tttaccgctg ccgttgacac ccaatagccc gtagcgtgcg ccgctttcca
     9841 gcgacagggt aatgtcatgc agaacggttt tgccttcgta acccaaatca gcgtgttcta
     9901 gctttaacaa aggattgggc agatggtcgg gatggtaaaa ctcaaaggaa aactcgctgt
     9961 ccagatgcgc gggcgcaacg cgttctagct ttgccaaagc cttcatgcgg ctttgcgctt
    10021 gaacggcttt ggtggctttg gctttgaagc ggtcgataaa ggattgcaga tgtttgattt
    10081 gcgcctgctg tttgacatag gcagcttgtt gttgcgcgag acgctgcgcg cgttcgtttt
    10141 ggtaaaaatc gtaattgccg ccgtattgcg tgagtttttg ctgcgataat tcaatggttt
    10201 gggtagttgc cgcgttgaga aaatcgcggt cgtgggaaat gatgatttgc gtgcagggta
    10261 aagaggcaag gtggttttcc agccacaaga cggtttctaa atccaagtgg ttggtcggtt
    10321 cgtcaagcaa gagcaaatcg gcgcggcaaa tcagggcttg cgcaagattc aagcgcatac
    10381 gccagccgcc ggaaaaggat ttgacggggc ggctgtgttc ttcttgcgaa aaacccagcc
    10441 cgttcaacaa ttttgccgcg cgggccggcg cggtataagc gtcgatttct tccaatttgg
    10501 catgatattc cgcctgcttc atgccgtcat tttgcgcttc cgcctgcctc aatgccgtct
    10561 gaaaagcctg caactcggca tcgccctgca aaacgtaatc caaagcggaa atatccaaat
    10621 cgggcgtttc ttgggaaacg gaagcgagcc gccagttttt cggaatcgag acatcgccgc
    10681 cgtcctgagt gattttaccc ttgattaagg caaacaggct cgatttgccc gttccgtttt
    10741 tgccgatcaa accgacgcgc tgaccgggat tgacggtagc gttggctttg tcgagcagga
    10801 ctttcaaacc gcgttgcagg gtgaggtttt tgatttcaat cataacggaa acatcgtcgg
    10861 gcgggaaaag cccgtatttt acctgaaagt cagtgccgat gccgtctgaa acgggaaatt
    10921 tacggctgaa gccaagccca agccctgcgc ccttccgagt gcaggaaaac caatgtcctg
    10981 aatgccgaat cggtattcat acattccacg ccgattccga ttcgggaaaa atccgccatg
    11041 attttgggat ggataaactc ctgagccgcg cccgtcccga taatcaatat ttccggatag
    11101 tcatccgctt tgacatcaga caacagatta tccggagtca gttctgacaa tgactgccat
    11161 ttcgagaggc cggcagaatc cctatgcagc agcacaggct tattgaaatg tctgccggac
    11221 agccggattt cacccgtgcg gcggtcatac tctgcaaaat gttcgtctat cggattttct
    11281 tcaaataaca tttttttatc ctgttgccgc ttcatctgta tcaggagggg tgcaaaatca
    11341 gacaaattca tgtaggatta gcggatttca tctgacctct cctgctgatt tcagacggca
    11401 tttgattcaa agtgcggcac aattatatcg gcagcggata ttttcgtctt tcaatattta
    11461 catttcagtc ggcttacaag gagacacaat gaagccagta aacatcggtc ttttaggttt
    11521 gggtacggtc ggcggcggta cggctgccgt gttgcgggac aacgcggagg aaatttcccg
    11581 ccgcttgggg cgcgaagtgc gcatcagtgc cgtatgcgac ttgagcgaag aaaaagcccg
    11641 ccaaatctgc ccgtccgcag cctttgtcaa agatccgttc gaactggtcg cgcgtaaaga
    11701 cgtcgatgtc gtcgtcgaat tgttcggcgg cacgggcatt gccaaagatg cggtgttgaa
    11761 agccattgaa aacggcaaac acatcgttac cgccaacaaa aaactgctcg ccgaatacgg
    11821 caacgaaatc ttcccgctgg cggaagaaaa aaatgtcatg gtgcaatttg aagcggcagt
    11881 agcgggcggt atcccaatca tcaaagccct gcgcgaaggt ttggcggcaa acaggattaa
    11941 atccatcgcc ggcattatta acggcaccag caacttcatc ctctccgaaa tgcgtgaaaa
    12001 aggcagcgcg tttgccgatg tactgaaaga agcgcaggca ctgggctatg ccgaagccga
    12061 cccgaccttc gacatcgaag gacatgacgc gggccataaa atcaccatca tgagcgcgct
    12121 ggcattcggc acgccgatga acttttccgc ctgctacctc gaaggcatca gcaaactcga
    12181 cagccgcgac atcaaatacg ccgaagaact tggctaccgc atcaaactgt tgggcatcac
    12241 ccgcaaaacc ggcaaaggca tcgagctgcg cgtccaccct accctgattc ccgaaagccg
    12301 cctcttggca aacgtcaacg gcgtgatgaa cgccgtgcgc gtcaacgccg atatggttgg
    12361 cgaaacctta tattacggcg cgggcgcggg cgcattgccg accgcttccg ccgtggttgc
    12421 cgatatcatc gacatcgccc gcctggttga agccgatacc gcccaccgcg taccgcatct
    12481 ggcgttccaa cccgcgcaag tccaagcgca aaccatcctg cctatggacg aaattaccag
    12541 cagctactac ctgcgcgtcc aagccaaaga cgaaccgggc acgctggggc aaatcgccgc
    12601 gctgttggca caagaaaacg tgtccatcga agcactgatt caaaaaggcg tgattgatca
    12661 gaccactgcc gaaatcgtga ttctgaccca cagcacggtc gaaaaacaca tcaagtcggc
    12721 aatcgcagcc atcgaagcac tggattgcgt ggaaaaaccg attaccatga tccgcatgga
    12781 aagcctgcat gactgagccg aaacacgaaa tgccgacgga agagcaggtt gccgcgcgca
    12841 aaaaagcaaa agccaaaatc cgcaccatcc gcatttgggc atgggtcatt ttggcgttgc
    12901 tcgcttcaac cgccctgctc tcccaatgcg cgatgtccaa accgcaggca aaacagaaaa
    12961 ttgtcgagtc ttgcgtgaag aatattccgt ttgccgaaaa atggcaaaac gatttacggg
    13021 cccgcggttt agattcaaac aatacccgcc ttaccgtcga ctactgcaaa tgtatgtggg
    13081 agcagccttt ggacagattg agcgagaaac agattagatc cttcggcaaa ctcggcgcac
    13141 aagaacagct tgacctgctc ggcggcgcaa atgcctttga agcacgtgac aagcagtgtg
    13201 ttgccgattt gaaatcagaa taatgtggac cgataaaaaa gccgattctt taaagaatcg
    13261 gcttttttca taaaaaacgg cttacagtgc gtctttcaaa gctttgccgg cgcggaattt
    13321 aggcgttttg gcggcggcaa tggtcagagg ctcgccggtt ttggggttgc ggccttggcg
    13381 ttccgcacgt tcgcccacgt agaaagtacc gaaaccgacc aaagtaacgg tgtcgccttg
    13441 tttcagggcg gtggttactg cattggtagt ggcatccaaa gctttttgtg cggcggcttt
    13501 ggaaatgtcg gcttcttgag caatcgcttc gatcaattca gacttgttca caatcagtcc
    13561 cttcctgtct taaaaaatga tgaaatgccc gaatactcgg ggtttgtact gcttgagcaa
    13621 ctttcgcttt atagcaattc tgaaattgcc gtgtcaagca aaaaatacgg aatcacccta
    13681 tttgacaggc tttcaggacg aaaccgcatt tttacaacac atttcctgcg tttcaatgtt
    13741 tggttgccct gctgcggggt tttggttttg aagcggattc cgccgccgct tccgcaccag
    13801 aaggttctgc ccaaggctca ggctggcttt ccaaacccag agccaatacc tcgtctatcc
    13861 atttgaccgg atggatggtc aggccggttt tcacgttttc agggatttct tccaagtctt
    13921 tgaggttgtc ttttggaatt aaaacgtgtt tgatgccgcc gcgaagcgca gccaacagtt
    13981 tttccttcag accgccaatc ggcaggactt cgccgcgcag ggtaatttcg cccgtcatcg
    14041 ccacatcggc gcgtaccggg attttggtaa aggcagatac cgccgccaag gtcatcgcaa
    14101 tacccgcact agggccgtct ttcggcgtcg cgccttcggg aacgtggatg tggatgtctt
    14161 ttttctcgta aaaatcagga gccaaaccca ctgattccgc acgggagcgg acaaccgacc
    14221 acgctgcgga cacggattcc ttcatcacat cgcccaactg gccggtgcac tgaatcacgc
    14281 ccttacccgg caatgctgcg gcttcgacgg tcagcaattc gccgccgact tccgtccacg
    14341 ccaaaccggt tacttgtccg atacggtttt cgctttcggc aacgccgtaa tcgaagcggc
    14401 gcacacccaa atagtcgtgc agatttttct catttacttt aaccgccctg ggcttggctt
    14461 ttccggtttt tttggttttt gagtcttcgt ccaaggtaat ctgcatcacc accttgcggc
    14521 agattttggc aatctcgcgg tcgagcgaac gcacgcccgc ctcgcgggtg tagtaacgga
    14581 taatatcgcg caccgcgctt tcttcgattg ccaattcccc ttcttttacg ccgttgcgct
    14641 tcatttgctt cggcacgagg tactgcatcg cgatattgat tttttcgtct tcggtatagc
    14701 cggacagacg gatgatttcc atacggtcga gcagcggtgt cgggatattc aggctgtttg
    14761 aagtcgcaat aaacatcaca tcgctcaaat cgtaatccac ttcggcataa tgatcggcga
    14821 acttgttgtt ttgctcggga tcaagcactt cgagcaacgc gctggcggga tcgccccgga
    14881 agtcgctacc caatttgtcg atttcgtcga gcaggaacaa tgggtttttt acgccggctt
    14941 ttgccatatt ctgcaaaatc ttaccgggca tggagccgat ataggtgcgg cggtgtcccc
    15001 ggatttcgct ttcgtcgcgc acgccgccca aagccatgcg gacatatttc cgccccgttg
    15061 ctttggcgat ggattcgccc aaagaggttt tgcccacgcc tggagggccg accaggcaca
    15121 gaatcgggcc tttgagtttg tccatacgtt tttggacggc gaggtattcc aaaatccgtt
    15181 ctttgacttt ttccaggccg tagtggtcgg tatccagcac caatccggct ttggcgatgt
    15241 ctttgctgac gcgggatttt ttcttccacg gcagttcgag cagggtgtcg atgtagttgc
    15301 gtacgacggt ggattcggca gacatcggcg gcatcatttt gagttttttc agttcggaca
    15361 ggcatttttc ttccgcttct ttactcatac ccgccttttt gatgcctgct tccaaggcat
    15421 ccagttcgcc gttttcgtct tcttcgccca attctttgtg tatcgcttta atctgttcgt
    15481 tcagataata ttcgcgctgg gatttttcca tttggcgttt gacgcgtccg cgtatgcgtt
    15541 tttcggcctg cataatgtcg agttcggatt ccagctgtgc cagcaggaat tccatccgtt
    15601 tgccgatttc gggaatttcc aaaatctgtt ggcgttgcgc cagtttcaac tgcaaatgcg
    15661 ctgcgaccgt atcggttagc cggctgtttt cggcaatgcc gttaatgctg ccgataattt
    15721 cggcggggat ttttttattg agtttggcgt attgttcaaa ctgcgccaac agggtgcggc
    15781 gcacggcttc gaggtcggta ttgccgcccg tgtcttcttc cacgaccgtc tctatatggg
    15841 aaacgaacag accgcccgtg tcttcaatgc tcagaacacg tccgcgatac agcccttcga
    15901 ccaatacttt taccgtgccg tcgggcagtt tcaacacttg caggacttgt gcgaccgtac
    15961 cggtctgata caggtcggcg gcaaccggtt cttctagcgc cgcatcggtt tgcgccaaca
    16021 ggaaaaccgg ctcctcgcgg gtaatggcgt tttccagtgc ggcgatggat ttcggcctgc
    16081 cgacaaacag cggcagaacc atatgcgggt aaacgacgac atcccgcaaa ggaagggttg
    16141 ccaaggcggc atattcctca aaatgctttt ctttttgtgt cataggtact ctcttgtgtc
    16201 tgacagattg ccgattttcg cgtacattgg ggttgaaggt attatttcaa gcatatgtgg
    16261 tttatttatg gagtttgatg cgatgccgtc tgaaacattc cggcttcaga cggcatgggc
    16321 ttggaaagac aaggcgggaa caaaaaactg ttctgtgttg ccgctccttg ctgtaccatc
    16381 cgtatggttt gcggttctgc cgccctattt tcaaaacatg acgcaggtat tccatgtctt
    16441 cttttatttt tcccgataac gggttcgaat ggcgcaacga aagtctgcaa aagccgccca
    16501 aaggttggca ttatgtccgc gaaagtggtg caaacggcat tttgaaggct gcctatcaaa
    16561 atattgcaac tgtctggcag ggcgatttcc acaatgccaa acaggtgctt tccgcaatga
    16621 agaagaaggt ccgcaaacct gccgccgtcc gttccgatgc ggatattgcc gcccttttcc
    16681 acgcccaccg tatgaagcag gcgcagcaga gccgtattct gaatatgctt gccgttgaaa
    16741 tccgccccgg ttttgtgttg gacaacaaac gcgcgcccga tatacgcgcc gccctgctcg
    16801 acgtgtacgg agaggcggac ggcaaaccgt ttttcctgcc gctcaatctg ctgctggggt
    16861 ttatgggtgc gcacgagtgg cataagaaag gggttgccgt tccgcagctg ggcggcagca
    16921 tacacgttcc tttcggcgta ttctcgccgt tgcgcggcga atacctcgac ctgctcgc
//
LOCUS       DAXIFD010000022        16785 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.022, whole genome shotgun sequence.
ACCESSION   DAXIFD010000022 DAXIFD010000000
VERSION     DAXIFD010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16785
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.022"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            857..2305
                     /gene="gnd"
                     /locus_tag="ACFOCN_000560"
     CDS             857..2305
                     /gene="gnd"
                     /locus_tag="ACFOCN_000560"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019269816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HFC6969757.1"
                     /translation="MKGDIGVIGLAVMGQNLILNMNDCGFKVVAYNRTIGKVDEFLNG
                     AAKGTGIIGAYSLQDLVDKLEKPRKIMMMVRAGSVVDDFIEQLLPLLEKGDIIIDGGN
                     ANYPDTTRRTHYLAEKGILFVGMGVSGGEEGARHGPSIMPGGDERAWEAVKPIFQAIA
                     AKTPQGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFMKDGLGLSYDEMHRV
                     FAEWNKTELDSYLIEITAAILGYKDEGGEPLVEKILDTAGQKGTGKWTGINALDLGIP
                     LTLISEAVFARCVSSFKEQRVQTGKLFARTVTPVEGGKQEWVEALRQALLASKIISYA
                     QGFMLIREAGESYGWDLDYGNTALLWREGCIIRSAFLSNIRDAYENNPDLVFLGADPY
                     FKNILENCLPAWRKVVAKAVECGIPMPCMASAITFLDGYTTERLPANLLQAQRDYFGA
                     HTYERTDKPRGEFFHTNWTGKGGDTASTTYDI"
     gene            2368..3639
                     /gene="waaA"
                     /locus_tag="ACFOCN_000561"
     CDS             2368..3639
                     /gene="waaA"
                     /locus_tag="ACFOCN_000561"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HFC6969758.1"
                     /translation="MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRGERFGKPYP
                     NPVTGAVWIHAVSVGETRAAQPLIRELRQRFPDAPLLMTQMTPTGRETAQVLFPDAQC
                     RYLPYDKKTWVRQFLREHRPMFGVLMETEIWPNLMKECRRAGVPLFLANARLSEKSLN
                     GYLKVRSLIRPAVASLTGCLVQTEADAARLAKLGAASVQVCGNTKYDLMPSEQMKTLA
                     GQFEKRIGDRPVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTAFE
                     TAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNII
                     EPLSCGVPTIFGFSTYNFSEACRHALASGAAVQVESADAWREAVEKTLSYEGGGMQMQ
                     ARVDGFIAQHRGAGARIAEAVREAVCGHRGR"
     gene            3680..4129
                     /locus_tag="ACFOCN_000562"
     CDS             3680..4129
                     /locus_tag="ACFOCN_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family copper resistance protein"
                     /protein_id="HFC6969759.1"
                     /translation="MSIYALAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSCEARRE
                     VEKAMSYRAVRVMPFVVGLLFASGVVMAANRYLPILGEPFATSFGTMLTLKILLAFSV
                     LAHFAIAVVKMARSTLTVGWSKYIHAVVFTHMLLIVFLAKAMFYISW"
     gene            4162..5136
                     /locus_tag="ACFOCN_000563"
     CDS             4162..5136
                     /locus_tag="ACFOCN_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HFC6969760.1"
                     /translation="MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNGSHKVGVKEA
                     LAWSGLWVAVSCLFAGWLYFELAGNLGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVF
                     LMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVRQFEWILYLFGAFLLYTG
                     IHMMKPEGDEEEDLANSRLLNAVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMI
                     ELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLA
                     FVLGFIGVKMLVMHWVHIPISVSLSVVFGALGASILTSLIYTKKQPDK"
     gene            5205..5280
                     /locus_tag="ACFOCN_000564"
     tRNA            5205..5280
                     /locus_tag="ACFOCN_000564"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5238..5240,aa:Lys,seq:ttt)
     gene            5500..6753
                     /gene="murA"
                     /locus_tag="ACFOCN_000565"
     CDS             5500..6753
                     /gene="murA"
                     /locus_tag="ACFOCN_000565"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HFC6969761.1"
                     /translation="MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNV
                     PMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPT
                     LARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGVEIVIEHGYVKAKGKLKGTRVAMDV
                     VTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMIVEGV
                     DELHGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAG
                     DDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHV
                     PELNRMRANITTEGNTAFVQGVERLSGAVVKATDLRASASLVIAGLAARGETVVEQIY
                     HLDRGYENIEKKLGSVGAKIERVSG"
     gene            6834..8012
                     /locus_tag="ACFOCN_000566"
     CDS             6834..8012
                     /locus_tag="ACFOCN_000566"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HFC6969762.1"
                     /translation="MAFLKLTEQNVQGKTVLIRADMNVPFKDGKISDDTRIRASLASI
                     QYCMDNGASVIVMTHLGRPTEGEFHPEDDVAPVAAHLGGLLGKNVKVLNDWRENKPAL
                     NAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAP
                     VACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGI
                     ANTFLLAEGKAIGKSLAEHDLVEESKKIMAKMAAKGGSVPLPTDVVVAKAFTADAEAV
                     VKDIADVAEDDMILDIGPKSAAELADLLKAAGTVVWNGPVGVFEFDQFAGGTKALAEA
                     IAQSKAFSIAGGGDTLAAIAKFGVTDQIGYISTGGGAFLEFLEGKELPAVAALEKRGA
                     "
     gene            complement(8079..8327)
                     /locus_tag="ACFOCN_000567"
     CDS             complement(8079..8327)
                     /locus_tag="ACFOCN_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6969763.1"
                     /translation="MLTSEQVKAMIEGVAKCEHIEVEGDGHHFFAVIVSSEFEGKARL
                     ARHRLIKDGLKAQLESNELHALSISVAATPAEWAAKAQ"
     gene            complement(8418..9335)
                     /gene="ftsX"
                     /locus_tag="ACFOCN_000568"
     CDS             complement(8418..9335)
                     /gene="ftsX"
                     /locus_tag="ACFOCN_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HFC6969764.1"
                     /translation="MSIIHYASLHIESARTALKELLRQPFGTLLTLLMLAVAMTLPLF
                     MYLGIQSGQSVLGKLNESPQITVYMETAAAQSDSDTVRSLLARDKRIANVRFIGKEDG
                     LAELQSNLDQNLVSMLDGNPLPDAFIVTPDPATTPAQMQAIYRDITKLPMVESASMDT
                     EWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPAS
                     FIRRPFLYQAMWQSILSAAVSLGLCGWLLSTVRPLVDAIFKPYGLNIGWRFFYPEEIA
                     LVFGFVIALGVFGAWLATTQHLLGFKAKK"
     gene            complement(9332..9982)
                     /gene="ftsE"
                     /locus_tag="ACFOCN_000569"
     CDS             complement(9332..9982)
                     /gene="ftsE"
                     /locus_tag="ACFOCN_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HFC6969765.1"
                     /translation="MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTV
                     LKLISGITKPSRGKVHFNNQDLGTLTDNQIGFMRQHIGIVFQDHKILYDRNVLQNVIL
                     PLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLI
                     ADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLA"
     gene            complement(10176..10658)
                     /locus_tag="ACFOCN_000570"
     CDS             complement(10176..10658)
                     /locus_tag="ACFOCN_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HFC6969766.1"
                     /translation="MKYLNLAAIALAATFAAHTASADELAGWKDGTAQSLQSLKAPVR
                     IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW
                     RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTEAVKLAHSKCR
                     "
     gene            10782..11135
                     /gene="arsC"
                     /locus_tag="ACFOCN_000571"
     CDS             10782..11135
                     /gene="arsC"
                     /locus_tag="ACFOCN_000571"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271974.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA];
                     GO_process: GO:0046685 - response to arsenic-containing
                     substance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HFC6969767.1"
                     /translation="MPEIKIFHNPRCSKSRAALSLLEERGIAAEVVKYLDTPPDLSEL
                     KDIFNKLGLASARGMMRVKDDLYKELGLDNPDLDNDALLRAIAEHPALLERPIVLANG
                     KAAVGRPLENIEAIL"
     gene            11132..11788
                     /locus_tag="ACFOCN_000572"
     CDS             11132..11788
                     /locus_tag="ACFOCN_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HFC6969768.1"
                     /translation="MNKRLFCSRNGLRYYLLGGFCLSVFPLLLVFASSVWAVYRTGGQ
                     VLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYM
                     TEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIDSVVIVSDPYHLA
                     RAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGSRFLGWLSD
                     "
     gene            11904..13298
                     /gene="gltX"
                     /locus_tag="ACFOCN_000573"
     CDS             11904..13298
                     /gene="gltX"
                     /locus_tag="ACFOCN_000573"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFC6969769.1"
                     /translation="MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDT
                     DLARSTAESVNIILDGMKWVGLNYDNADNVVYQTRRFDRYKEVIAELLEKGHAYYCYC
                     SKEELEAMREKAEKEGTATYDRRWRPEAGKTLPEIPAGVQPVVRFKTPLDGVTKWADL
                     VKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINI
                     LKAIGANLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWA
                     HGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITTNEKLAEMVKPRLA
                     LRDIHETSKPALEDVLALVKDRAQDLNALADECLYFYKKQVPAEADVAKHWDDEASAR
                     MLRFAERLEGLEDWNTEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVL
                     ALIGKEEVLKRIRA"
     gene            13319..13714
                     /locus_tag="ACFOCN_000574"
     CDS             13319..13714
                     /locus_tag="ACFOCN_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969770.1"
                     /translation="MPSDVGIRLQTAFKRKLKMKKIFYFLMVVFSTSVWAGDAEDNLL
                     SIQSGYHALLQKQNNLDGKIIGMQSDLEDARRRLQAAQADIARLEAEIPAAMAQKARQ
                     AEELRQIGVRLDHAWNAVYGAGGTKASGN"
     gene            13718..14209
                     /locus_tag="ACFOCN_000575"
     CDS             13718..14209
                     /locus_tag="ACFOCN_000575"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6969771.1"
                     /translation="MNSLFVDNTVFITRLKAGHIGRLVQALFEEWHGFEPWSSVDKIH
                     AYYGRCLKDDELPLAFAAVDDSGILLGSATVKRHDMESFPQYEYWLGDVFVLPEYRGK
                     GIGRRLVAHCIGAARSLGIKFLYLYTPDVQIFYESFGWAVVGRHFHNGEWVTVMRLDM
                     DKV"
     gene            complement(14332..>16785)
                     /gene="mutS"
                     /locus_tag="ACFOCN_000576"
     CDS             complement(14332..>16785)
                     /gene="mutS"
                     /locus_tag="ACFOCN_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HFC6969772.1"
                     /translation="DITLTTRGQVDGEPVKMAGVPFHAAEQYLARLVKLGKSVAICEQ
                     VGEVGAGKGPVERKVVRIVTPGTLTDSALLEDKETNRIVAVSPDKKYIGLAWASLQSG
                     EFKTKLTTVDKLDDELARLQAAEILLPDSKNAPQLQTASGVTRLNAWQFAADAGEKLL
                     TEYFGCQDLRGFGLDGKEHAVAIGAAGALLNYIRLTQNLMPQHLDGLSLETDSQYIGM
                     DAATRRNLEITQTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEA
                     VAALESQYKPLQCRLKNIADIERIAARIAVGNARPRDLASLRDSLFELAQIDLSANGS
                     SLLETLKAVFPENLSTAEQLRQAILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDE
                     FLLDLEAKERERTGLSTLKVEFNRVHGFYIELSKTQAEQAPADYQRRQTLKNAERFIT
                     PELKAFEDKVLTAQEQALALEKQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSAL
                     AKERNFVRPEFADYPVIHIENGRHPVVEQQVRHFTANHTDLDHKHRLMLLTGPNMGGK
                     STYMRQVALIVLLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETA
                     YILHHATEQSLVLMDEVGRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLP
                     EAHAAAVNMHLSALEQGQDIVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLN
                     GLENQAAANRPQLDIFSTMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLT
                     PREALSELYRLKDLCKSVS"
BASE COUNT         3757 a         4087 c         4939 g         4002 t
ORIGIN      
        1 aaaccgtgct gtaaacggca gactgatgcc gtcattccca cgaaagtggg aatccagaac
       61 gtaaaatcta aagaaaccgt tttcccgata agtttccgta ccgacaaggc tggattcccg
      121 cctgcgcggg aatgacggca gagcggtttc tgttttttcc gataaatgcc gcaatctcaa
      181 atcccgtcat tcccactttc gtgggaatga cggaatgtag gttcgtggga atgacgcggt
      241 acaggtttcc gttacgtatc cccatccgaa agtttattta tacacaagca atccaaagtt
      301 atctgactga aatattgtga gatttacccg caaatctcat tttttccacc acttaataca
      361 caaattcgga tgcgtactct gccaatatgc agaaaaaaga tatttgtatc gacacattct
      421 cattcctaca agttccaaac acacttccct ctcaaatctc cacaacattc ccgttcttaa
      481 aggcatcggc agccattcgg taaagaaaag cggaatgcca tctgcacaac aagcaaactg
      541 tccacaaaaa ctattcttca tgaaaaacaa tccacaggta tgcacaaaag ggaatccgcc
      601 ttaccgacac ccttttaaaa cggaaatccc aatgattttt aaaataaaaa aaagttaccc
      661 acagaaaatt tctcctatca atataatcat cgttttttta tttaattttt atattttatt
      721 tataagcctt cagggaaacg cacggtaaag cgtaaaggca tcttttcaaa aaattaaaaa
      781 gttaaggatt gttaaacaag tgtaaatcag gtagagttgc ggtcgataaa ttaaatctat
      841 aacggagctt cctgcaatga aaggcgatat tggcgtaatc ggtttggcgg ttatggggca
      901 aaacctgatt ttgaatatga acgattgcgg atttaaggtt gtcgcctaca accgaacaat
      961 cggtaaggtg gacgaatttt taaacggcgc ggcaaaaggg acgggcatta tcggcgcgta
     1021 ttccctgcaa gacttggtcg ataagctgga aaaaccgaga aaaatcatga tgatggttcg
     1081 cgcaggttcg gtggttgacg actttatcga acaactgctt ccgttgttgg aaaaaggcga
     1141 catcattatc gacggtggca atgccaatta ccccgacacg acacggcgga cacattacct
     1201 tgccgaaaaa gggattttgt ttgtcggcat gggggtctcc ggcggagagg aaggtgcgcg
     1261 gcacggcccg tctatcatgc cgggcggaga tgagcgcgca tgggaagctg ttaaaccgat
     1321 tttccaggcg attgctgcga aaacccctca aggtgagccg tgttgcgatt gggtcggcag
     1381 ggatggtgcg ggacatttcg tcaaaatggt gcataacggc atcgaatacg gcgatatgca
     1441 gttgatttgc gaagcgtacc agttcatgaa agacggtttg ggactgtcct acgacgaaat
     1501 gcaccgcgtg tttgccgagt ggaacaaaac cgagctggat tcttatctga ttgaaatcac
     1561 agcggcaatt ttgggctata aggacgaagg cggcgaaccg ctggtcgaga aaatcctcga
     1621 tacggcaggg caaaaaggca cgggcaaatg gacgggcatc aatgctttgg atttgggtat
     1681 tccgttgacg ctgatttccg aagcggtatt cgcccgctgc gtttcgtcgt tcaaagaaca
     1741 gcgcgtgcag accggcaagc tgttcgcccg aaccgttacg cccgtcgaag gcggcaaaca
     1801 agaatgggtt gaggcgttga gacaggccct gcttgcatcc aaaatcattt cctacgcaca
     1861 aggctttatg ctgatccgcg aagcgggcga aagctacggc tgggatttgg actacggcaa
     1921 cactgcgctg ctgtggcgcg aggggtgcat cattcgcagc gcattcttaa gcaatatccg
     1981 cgacgcgtat gaaaacaatc ccgatttggt gttcttgggt gcggatccgt atttcaaaaa
     2041 tattttggaa aactgcctgc cggcgtggcg caaggtggtt gctaaggcgg tcgaatgcgg
     2101 catccctatg ccttgcatgg cttcggcgat tacgttcttg gacggctaca cgaccgaacg
     2161 tctgcctgcc aatctcttgc aggcacagcg cgactacttc ggcgcgcaca cttacgaacg
     2221 caccgacaaa ccgcgcggcg agtttttcca taccaactgg acgggcaagg gcggagatac
     2281 cgcttcgaca acctacgata tttgattccg ttgccgaaat gccgtccgaa ccgttcggac
     2341 ggcatttgtt ttgcaggaaa tagaaagatg ttccaatggc tttatgatgt attgtggctg
     2401 cttgcgccga tatggatacg gcgttatttg gacaaacgct ccggaagtgc cccggcatat
     2461 cgggcgcatc ggggcgagcg tttcggcaag ccgtatccga atcccgttac cggcgcggtt
     2521 tggatacacg ccgtttcggt cggggaaacg cgtgccgccc aacctttgat acgcgagttg
     2581 cggcagcgtt ttcccgatgc gccgctgctg atgacgcaga tgaccccgac gggacgggaa
     2641 accgcgcaag ttctgtttcc cgatgcgcaa tgccgctatc ttccgtatga caaaaaaacg
     2701 tgggtacggc agtttttgcg cgaacaccgc ccgatgttcg gcgtattgat ggaaacggaa
     2761 atctggccca acctaatgaa ggaatgccgg cgcgcgggtg tgccgctgtt tttggcgaat
     2821 gcgcggctgt cggaaaaatc gttgaacggt tatctgaaag tccgcagcct gatccgtcct
     2881 gctgtcgctt cgctgacggg ctgtctggta cagacggagg cggatgcggc gcggttggcg
     2941 aaattgggcg cggcatccgt gcaggtgtgc ggcaatacca aatacgacct gatgccgtcg
     3001 gaacagatga aaacgctggc ggggcagttt gaaaaacgca tcggagaccg gccggttgcc
     3061 gtgtgcggca gcacgcgcgt ttatcggggt gaagacgagg cggagaaact gctggcggcg
     3121 tggcaacaat atcgcggcga tgccctgctg gtcgtcgtgc cgcgccatcc cgagcatttt
     3181 cagacggcat ttgaaacggc aaaacgcttc gggtttaagg ttcagcggcg cagcgacggt
     3241 ttgccggtcg aacccgatac gcaggtgtgg ataggcgaca gtatgggcga gctgtatgcg
     3301 tattacctgt gcgccgatgt tgcttttgtc ggcggcagtc tggtcgattc gggctgtcag
     3361 aacatcatcg aaccgctttc ctgcggcgtt ccgacgatat tcggcttttc gacctacaat
     3421 ttttccgaag cctgccggca cgccttggca tcgggtgcgg cggttcaagt cgaatcggcg
     3481 gacgcgtggc gggaagccgt tgaaaaaacc ttatcgtacg aggggggcgg aatgcagatg
     3541 caggcgcgcg tggacggctt tatcgcacaa catcgcggag cgggcgcgag aatcgccgag
     3601 gcggtgcggg aagcggtatg cggacatcgg gggcgatagt gatacaatcc gcatccgagt
     3661 tttccggttg gagtaccgta tgagtattta cgcacttgca cacatcgtcc atctgtattg
     3721 cgccattgcc tttgtcggcg gcgtgttttt tgaagtgctg gttttgtccg tcctgcatac
     3781 gggacgggtg tcgtgcgagg cgcggcgcga agtggaaaag gcaatgtctt accgcgccgt
     3841 cagggtgatg ccgtttgtgg tcggactgct gttcgccagc ggcgtcgtga tggcggcaaa
     3901 ccgctacctt cctatattgg gcgaaccgtt tgccacttcc ttcggtacga tgctgacgct
     3961 gaaaatcctg ttggcgttca gcgtgttggc gcacttcgcc atcgccgtcg tcaaaatggc
     4021 gcgttccaca ctgacggtcg gctggtcgaa atacatacac gccgtcgtct ttacccatat
     4081 gctgctgatt gtctttttgg caaaagcgat gttttatatc agctggtaac acaactacat
     4141 ttcaaatcag gagattgaac catgacagaa tatcccggca tcgggtcgcc gttgttttac
     4201 ggcgtttttt ttgcggcagt gctggtcatg attgccttgg atatgttttc gctgaagaaa
     4261 aacggcagcc ataaagtcgg cgtcaaagaa gccttggcat ggagcggctt gtgggttgcc
     4321 gtatcctgcc tgttcgcggg ctggctgtat ttcgaactcg ccggcaatct cggctacggc
     4381 gcggcagtcg caaaagaaaa agtattggaa ttctttaccg gctacatttt ggaaaaatcg
     4441 ttggcagtcg acaatatttt cgtgttcctg atgatattcg gctacttcaa agtcgcacca
     4501 cagtttcagc accgcgtgct gctgtacggc gtattgggcg cattggtatt gcgcactgtc
     4561 atgattttcg tcggcgcggc actggttcgg cagttcgagt ggattctgta tctgttcggc
     4621 gcgttcctgc tctataccgg catacacatg atgaagcccg aaggcgatga ggaagaggat
     4681 ttggcaaaca gcaggctgct gaatgccgtc aagaaagtcg ttccggtcgg cacggaattt
     4741 cacggcgaga aattttttac cgtcgaaaac ggcaaaaaaa tcgccacgcc gctgtttttg
     4801 gtgctagtca tgattgaatt gagcgatgtc gtgtttgccg tggacagcat ccccgccgtc
     4861 tttgccgtta ccaccgatcc gtttatcgtg ctgacctcca atattttcgc cattttgggt
     4921 ttgcgggcga tgtatttcct gctggcggat gtggcggaac gctttatctt cctgaaatac
     4981 ggcttggcat tcgtgttggg ttttatcggt gtgaaaatgc tggtaatgca ttgggtgcat
     5041 atcccgattt ccgtttcact gtcggtcgtg ttcggcgcgt tgggtgcatc gatactgacc
     5101 tcgttaattt atacgaaaaa acagcctgat aaataaaatg ccgtctcaac gccgacaaaa
     5161 tggttgacag catcaggctt gatgtataga atttcgagct tgtcgggtcg ttagctcagt
     5221 cggtagagca gcggactttt aatccgttgg tcgagcgttc gaatcgctca cgacccacca
     5281 gataaaacaa aaaaagctga gttttcaaaa ctcggctttt tttgttttcc gacaatcctt
     5341 gttcggaaag cgcggcattt cgtcaaattc tttggtgcgg cttccgtatt tttcccgaaa
     5401 atcccttata attccgcctc tgcaaccttc atcgggtgat gctttatgcg ttgtcccgag
     5461 aattgaaata ttacaagtac ccaccaggaa agaacaaacg tggacaaact gaaaatctcc
     5521 gcaaacggcc cactcaacgg ggaaataacg gtctcgggcg cgaaaaacgc ggcattgccg
     5581 ctgatgtgcg cgggtttgct gacatcgggt acgttgcgcc tgaaaaacgt ccctatgctg
     5641 gcagatgtga aaaccacgca aaagctgctt caggggatgg gcgcgcgcgt cctgaccgac
     5701 aatatcagcg aatttgaaat taacggcggc acggtaaaca atacctgcgc cccttacgaa
     5761 ttggtacgga cgatgcgcgc ctcgattttg gtgctgggcc cgacgctggc gcgtttcggc
     5821 gaggcgcaag tcagcctgcc gggcggctgc gccatcggtt cgcgccccgt cgatcagcat
     5881 ttgaagggct tggaagcgat gggggtggaa atcgtcatcg aacacggtta cgtcaaggcc
     5941 aaaggcaaac tcaaaggtac gcgcgtggcg atggatgtcg ttaccgtcgg cggcacggaa
     6001 aacctgctga tggcggcgac tctggcggaa ggtacgacgg ttttggaaaa ctgcgccatc
     6061 gagcccgagg tggtcgattt ggcggaatgc ctggttaaaa tgggcgcgaa aatcagcggc
     6121 atcggaacat cgaccatgat cgtggaaggt gtggacgagc tgcacggctg cgaacacagc
     6181 gtcgtccccg accggatcga ggcggggacg ttcctgtgcg cggtggcgat aaccggtggc
     6241 agggtggttt tgcggaatgc cgcgccgaaa acgatggaag tggtgttgga caaactggtt
     6301 gaggcaggtg cggtgattga ggcgggcgac gattggatcg ccatcgatat gcggcagcgt
     6361 ccgaaggcgg tggacatccg cacggtcgtc caccccggct tccccacgga tatgcaggcg
     6421 cagtttatgg cattgaatgc cgtggcggag ggaagctgcc gcgtggtgga aacgattttt
     6481 gaaaaccgct ttatgcacgt ccccgagttg aaccggatga gggcgaacat tacaaccgag
     6541 ggcaatacgg catttgtgca gggtgtggaa cggctttccg gcgcagtcgt caaggcgacg
     6601 gatttgcgtg cgtccgcaag cctcgttatc gccggtttgg cggcgcgcgg cgaaaccgtg
     6661 gtcgaacaga tttaccactt ggatcgcggt tatgaaaata ttgaaaaaaa actcggcagc
     6721 gtcggcgcga aaatcgagcg cgtatccggc tgatcgggtt gcgatgccgt ctgaagcctt
     6781 cagacggcat caattgtttc tgtatcgcaa acactgattg aaaaggactg attatggcat
     6841 ttttaaaact gaccgaacaa aacgtgcagg gcaaaaccgt cctcatccgc gccgatatga
     6901 acgtgccgtt caaagacggc aaaatcagcg acgacacccg tatccgcgcc tcgctcgcgt
     6961 ccatccaata ctgcatggac aacggcgcat ccgttatcgt gatgacccac ttgggccgcc
     7021 cgaccgaagg cgagttccac cccgaagacg acgttgcgcc cgttgccgcg catttgggcg
     7081 gcctgttggg caaaaacgtg aaagtattga acgactggcg cgaaaacaaa ccggctttga
     7141 acgcgggcga tgtcgtgatg ctgcaaaacg tgcgtatcaa caaaggcgag aagaaaaacg
     7201 atttggaact gggcaaagcc tacgcttctt tgtgcgacgt gttcgtcaat gacgcgttcg
     7261 gcaccgcgca ccgcgcccaa gcctcgaccg aagccgtcgc ccaagccgct cccgttgcct
     7321 gcgccggcgt attgatggcg ggcgaactcg acgctttggg caaagccttg aaacagcccg
     7381 cgcgcccgat ggttgccatc gttgccggca gcaaagtgtc caccaagctg accatcctcg
     7441 aatcgctggc ggacaaagtc gaccaactca tcgtcggcgg cggcattgcc aacaccttcc
     7501 tgttggcgga aggcaaagcc atcggcaaat ctttggcgga acacgatttg gtggaagaat
     7561 ccaaaaaaat tatggcaaaa atggcggcca aaggcggttc tgtgccgctg ccgaccgatg
     7621 tcgtcgttgc caaagccttt accgccgatg ccgaagcggt cgtgaaagac attgccgacg
     7681 ttgccgaaga cgatatgatt ttggacatcg gcccgaaatc cgccgccgag cttgccgatt
     7741 tgctcaaagc tgccggtacg gttgtatgga acggccctgt cggcgtgttt gagttcgatc
     7801 aattcgcagg cggcacgaaa gctcttgccg aagccattgc tcaaagcaaa gcattctcga
     7861 ttgcaggcgg tggcgacacg ctggcggcga ttgctaaatt cggcgttacc gaccaaatcg
     7921 gctatatttc taccggcgga ggcgcgtttc ttgagttctt ggaaggtaaa gagttgcctg
     7981 ccgtagccgc tttggaaaaa cgcggcgcgt aagcggtttg atataaaaaa tgccgtctga
     8041 aacgttgtgc tgtttctgac ggcatttttg tgtggcgatt attgtgcttt ggctgcccat
     8101 tccgccggag tggcggcaac cgaaatggaa agtgcgtgca gttcgttact ttccagttgg
     8161 gctttgagtc cgtctttaat caggcggtgg cgcgcgaggc gtgccttgcc ttcaaattct
     8221 gatgaaacga tgacggcgaa aaaatggtgt ccgtcgcctt ctacttcgat atgttcgcat
     8281 tttgccacgc cttcaatcat ggcttttact tgttccgagg tcagcatggt aggttccttg
     8341 ttggaaaaat gcgccattat actggcaaat tgaaatgccg tctgaaaacg ggttcggacg
     8401 gcatttttga cggtgtttta ttttttggct ttgaagccga gcaggtgctg ggtggtggca
     8461 agccacgcgc cgaatacgcc caacgcgatg acgaagccga acaccagcgc gatttcttca
     8521 ggataaaaga aacgccagcc gatattgagc ccgtagggtt tgaagatggc atcgaccaag
     8581 gggcgcactg tggaaagcag ccaaccgcaa agccccaggc tgacggcggc ggaaaggatg
     8641 ctctgccaca ttgcctgata aaggaagggg cggcggatga acgatgcggg cgcgcccaag
     8701 agtttggtga tttcgatttc ttctttgcgg ctgaggattt gcaggcggat ggtgttgtgt
     8761 gcgacaagga cgaacgccat acccagcgtc agggaaagaa accataaaat tttacggata
     8821 aattcgttga tttggtacag cgtttgcacc cattcggtat ccatagacgc ggattcgacc
     8881 ataggcagtt tggtaatgtc ccggtagatt gcctgcattt gcgcgggcgt tgtcgcgggg
     8941 tcgggggtaa cgataaatgc gtcgggcagc gggttgccgt cgagcatcga aaccaaattt
     9001 tggtcgaggt tggactgtaa ttccgccaag ccgtcttcct tgccgatgaa gcggacgttg
     9061 gcgatccgtt tgtcgcgcgc cagcaggctg cggacggtat cgctgtcgct ttgtgcggcg
     9121 gcggtttcca tatagacggt gatttgcggc gactcgttga gtttgcccaa cacgctttgc
     9181 ccgctttgaa tgcccaaata cataaacagc ggcagggtca tcgcgacggc gagcatcagg
     9241 agggtgagca gcgtgccgaa gggttggcgc agaagctctt tgagcgcggt gcgggcggat
     9301 tcgatgtgca gcgaggcgta gtggatgatg ctcatgcgag tcgtcctttc gagaggcgca
     9361 ggatgcggtg tccgtagtcc gccatcaggg tttcgtcatg ggcggcaacg atgacggttg
     9421 ttcccgcttc gtggaaggtt ttgaacaatt ccatgatgtc gagcgcgtag gcgcggtcga
     9481 ggttggcgga gggttcgtcg gcaatcagca ggccgggctg gtgaacgacg gcgcgggcga
     9541 tgcacaggcg ttgttgttca ccgccggaga gggttacggg atcgtccaat tctcgtcctt
     9601 tcaggccgac tttttcgatg gcgatgcggg cgcgttcttc ggctttgcgc ggcggatagc
     9661 cgataatccg aagcggcagg atgacgtttt gcaggacgtt gcggtcgtag aggattttgt
     9721 ggtcttggaa cacgatgccg atgtgttggc gcataaagcc gatttggttg tcggtcagtg
     9781 tgccgaggtc ttggttgttg aagtggactt tgcccctgct tggtttggta atgcccgaaa
     9841 tcagcttgag gacggtggat ttgcctgaac cggagtgtcc tgcgataaaa atcatctcgc
     9901 ctttgttgat ttggaagctg acgtttttca gggcttcaaa accgccggga taggttttgg
     9961 aaacttgttc gaaacggatc ataggaggtc ctgtaaggaa gggcggcata tcgtttcggg
    10021 cggttgcgtc cgcagggata tgccgtctga acaataggta agacagtgcc gattataaag
    10081 attccgcctg cttttagata gtggataagt ttggcggata tgaaggtcgg gcgggaaaaa
    10141 tgccgtctga agcggcttca gacggcattc ggcgtttaac ggcattttga atgggcgagt
    10201 ttgacggctt cggtcaggct tttttcgttc acttccccgg taatggtctg cctgtatccg
    10261 catttcggtg cttcgacgac ggtaaagggc agtacgccga cagtgtttcc gtaggttttc
    10321 ataaagtttc ggctgttcgc cccggtgtaa cgccaaatcg ggtaggaaac aggagtttgt
    10381 ttgaggaagt tgccgatatt gtcggatgtg tcgagcgcga tgccgaccat atcgacgctg
    10441 ccttttttct gcgctttgta ccatttggac atggcgggca tctcttttcg gcacgggccg
    10501 caccaagtcg cccacaggtt gacgatgcgt acgggggctt tgagcgattg caggctttgc
    10561 gcggtaccgt ctttccatcc ggcaagttcg tctgccgagg cggtatgtgc ggcaaatgtg
    10621 gcggcaaggg cgattgcggc aagattcaag tatttcatcg ttttgtcctt tgtatgttga
    10681 ttcgggtatt gtaaaccgtt tggtacggtt gggggcggga tattgagtaa aaccctgcgt
    10741 aagccgataa taaggggatt gttgagaagc aaggaaatgt catgcctgaa atcaaaattt
    10801 tccacaatcc gcgttgcagc aaatcgcgtg ccgccttgtc cctattggaa gaacgcggca
    10861 ttgctgccga agtggtcaaa tatttggata cgccgcccga cttgtccgaa ttgaaggata
    10921 ttttcaacaa attgggcttg gcatcggcgc gcgggatgat gcgtgtgaaa gatgatttgt
    10981 acaaggaatt gggtttggac aaccccgatt tggacaatga cgcgctgctg cgtgccatcg
    11041 ccgagcatcc cgccctgttg gagcgtccga ttgttttggc gaacggtaag gcggctgtcg
    11101 gcaggcctct ggaaaatatc gaagcgatat tgtgaacaaa cggctgtttt gcagccgcaa
    11161 cggcttgcgc tattacctgt tgggcggttt ctgtttgagt gtttttccgc ttttgctggt
    11221 gtttgcctca tccgtttggg cggtttatcg gacgggcggg caggttttgc cgccgtatgt
    11281 ccgggcggat gccgcgctgg tgttgggcgc cgccgcgtgg gacaaacgcc cttccccggt
    11341 tttccgcgaa cgcatcaacc acgccatcgc gctttatcag agccgcaggg taggcaaaat
    11401 cgtgtttacg ggagggcgaa ccaaaaaagg ctatatgacc gaagccgagg tcgggcggcg
    11461 gtacgcgctc aaacaggggg ttccggcgcg caacatcctg tttgaaaaca cttcgcgcaa
    11521 cacttatgaa aacctgaaca acatccgtcc ggttttgcgt gccaacggta ttgacagcgt
    11581 ggtgattgtc agcgatccct accatttggc gcgggcggcg gaaatggcgg aggatttggg
    11641 tgtccgcgtt tatatgtctg ccaccccgac cacgcggttt gatgcgggaa ataagaaaaa
    11701 aatctttatg ctgcaagagg gatatgcgtt atccctctac cgtttggaaa aatggggcag
    11761 ccgctttttg ggatggctgt ctgattgaag cggtagaaaa tgccgtctga aacttatccg
    11821 caggcagggt tcggacggca tttttgatgc ccaagcacgg taaaaccagt aaaataaacg
    11881 ctttcaaaga tttcggagcc atcatgaccg tcaaaacccg tttcgccccc agccccaccg
    11941 gctacctgca cattggcggc gttcgcaccg ccttgttttc gtgggcgttt gcccgccatc
    12001 ataaaggcga atttttattg cgcatcgaag acaccgactt ggcgcgttct accgccgaat
    12061 ccgtcaacat catcctcgac ggcatgaaat gggtcggcct gaactacgac aacgccgaca
    12121 atgtcgtgta ccaaacccgc cgtttcgacc gctacaaaga agtcattgcc gaacttttag
    12181 aaaaaggcca tgcctactac tgctattgca gcaaagaaga gctggaagcc atgcgcgaga
    12241 aagccgaaaa agaaggcacg gcgacttacg accgccgctg gcggccggaa gcgggcaaaa
    12301 ccctgcccga aatccctgcc ggcgtgcaac ccgtcgtccg cttcaaaacg cctttggatg
    12361 gcgtaaccaa gtgggcggac ttggtcaaag gcgaaatttc catccccaac gaagccctcg
    12421 acgacctgat tatcgcacgc gccgacggca caccgaccta caacttctgc gtcgtggtgg
    12481 acgactacga catgggcgtt acccacgtta tccggggcga cgaccatgtg aacaacaccc
    12541 cgaaacaaat caacatctta aaagccatcg gcgcaaacct gcccgaatac ggacacctgc
    12601 ccatgattct caacgaacaa ggcaaaaaaa tctccaaacg cagcggcgat accgtcgcca
    12661 ttaccgattt cggcgcaatg ggcatcctgc ccgaagccat gctcaactat ctggcgcgct
    12721 tgggctgggc gcacggcgac gacgagttct ttacgatgga acaattcatc gaatggtttg
    12781 atttgaaaga cgtttccccg tctccaagcc gtatggactt gaaaaaactc tactggatca
    12841 acggcgaaca catcaaaatc accaccaacg aaaaactggc cgaaatggtg aaaccgcgcc
    12901 tcgccctgcg cgatatccat gaaacaagca agcctgcttt ggaagacgtg ttggcattgg
    12961 tcaaagaccg cgcccaagat ttgaacgcct tggcagacga atgcctgtat ttctacaaaa
    13021 aacaagtccc tgccgaagcc gatgttgcca aacactggga cgacgaagcc tccgcccgta
    13081 tgctgcgctt tgccgaacgc ctcgagggtt tggaagactg gaataccgaa gccatccacg
    13141 acctgttcaa acctttctgt gacgaagaag gtattaaaat gggcaaactc ggcatgcctt
    13201 tgcgcctcgc tgtctgcggc acggcgaaga ccccaagcgt cgatgccgtg ttggcattaa
    13261 tcggcaaaga agaagtgttg aaacgcatcc gcgcttaagt tatccacagg cgtgggtgat
    13321 gccgtctgat gttggaatac ggcttcagac ggcatttaaa cggaagttaa aaatgaaaaa
    13381 aatattttat tttctgatgg ttgttttttc tacaagcgta tgggccgggg atgcggaaga
    13441 caatctgctc agcatccaat ccggttatca tgccttactg caaaaacaaa acaatctgga
    13501 cggaaaaatc atcgggatgc agtcggattt ggaagatgcg cgcagacggt tgcaggcggc
    13561 tcaggcagac atcgcccgtt tggaagcgga aattcctgca gcaatggcgc aaaaagcccg
    13621 gcaggctgaa gagctgaggc aaatcggagt gcgtttggac catgcttgga atgcggttta
    13681 cggcgcaggg ggaacgaaag cgtcggggaa ttgaccgatg aattccctct ttgtggacaa
    13741 tactgttttc attacacggc tgaaagccgg gcatatcggc aggttggttc aggcgttgtt
    13801 tgaggagtgg cacggatttg aaccgtggtc ttctgtggat aagattcatg cctattacgg
    13861 caggtgtttg aaggatgacg aactgccgct ggcatttgcg gctgtggatg attccggaat
    13921 cctgttgggt tcggctacgg tcaagcggca tgatatggaa agttttccac agtatgaata
    13981 ttggttgggt gatgtctttg ttttacctga atatcgcgga aaaggcattg gcaggaggct
    14041 ggtcgcccat tgcataggcg cagcgcgttc gctggggata aagttcttgt atctttatac
    14101 gcctgatgtg caaatatttt atgaatcatt cggctgggcg gttgtcgggc gacatttcca
    14161 taacggtgaa tgggttacgg ttatgcgttt ggatatggat aaggtttaag ccgaatggac
    14221 aaatgccgtc tgagctgttc ggacggcatt tttatgtttg gaaacttctt gtcagataat
    14281 gtttatccac agatttttcc atatggtttg atgctgttcc gccaacggaa attaagatac
    14341 ggatttgcac aaatctttca gacggtatag ttctgacaat gcttcgcgcg gggtcaggct
    14401 gtcgggatcg agtttttcca aggctgctgc caatatacct tcaaaatgtt tttcctctgc
    14461 tttgtccaca aagttgccca cattcggttc atctcctttt tcagacggca tggtactgaa
    14521 aatatccagt tggggacggt ttgcggcggc ttggttttcc agtccgttca aatgcttttg
    14581 ggcggatttc aatgcgcgta caggcaggcc ggcgagtttg gcaacggcga tgccgtagct
    14641 tttgccggcg ggacccggtt ggatttggtg caggaaaacg atgtcctgtc cctgttcgag
    14701 cgcggaaagg tgcatattga cggcggcggc gtgggcttcg ggcaggtagg tcagctcgaa
    14761 atagtgggta gcaaacaggc tgaaggattt gtttttttgc agcaggtgtt cggcaacggc
    14821 gtgcgcgagg gcgaggccgt cgaaagtgga agtaccacgt ccgacttcgt ccattaaaac
    14881 aaggctttgt tcggtggcgt gatgcaggat gtaggcggtt tcgctcattt cgaccatgaa
    14941 agtggagcgg ttggaggcga ggtcgtccga tgcgccgatg cgggtgaaga tttgatcgat
    15001 gggcccgatt gtggcggcat cggcaggcac aaaacagccg gtgtgtgcca ataaaacaat
    15061 cagcgcgact tggcgcatgt aggtggattt gccgcccata ttggggccgg tgagcagcat
    15121 gaggcggtgt ttgtggtcaa ggtcggtgtg gttggcggtg aagtggcgta cctgctgttc
    15181 gacaacggga tggcggccgt tttcgatgtg gataaccgga tagtcggcaa actcggggcg
    15241 gacgaagttc cgctcttttg ccaaggctga aaatgtggac aacacgtcca gcgcggcggc
    15301 ggctttggcg gctttttgaa gctgcggcaa tgccgtctga aggtttttca atacgccgtc
    15361 aaagagttgt ttttctaagg cgagggcttg ctcttgagca gtcagcactt tgtcttcaaa
    15421 ggctttcaac tccggcgtga tgaagcgttc ggcgtttttg agggtttgcc ggcgttggta
    15481 gtcggcaggt gcttgttcgg cttgggtttt ggacaattca atgtaaaagc cgtgaacgcg
    15541 gttgaactcg actttgagtg tggacaaacc ggtacgttcg cgttccttgg cttccaaatc
    15601 cagcaaaaat tcgtcgccat ggttttgaat gcggcgcaat tcgtccagtt cgggatgaaa
    15661 accgtggttg atgacattgc cgtctttcag ccagacggaa ggttcgggca aaatggcttg
    15721 gcggagctgt tcggctgtgg ataggttttc agggaaaacg gctttgaggg tttccaacag
    15781 gctgctgccg tttgcggaca agtcgatttg tgccaactcg aacagactgt cgcgtaaaga
    15841 tgccaaatcg cgcgggcggg cgttgccgac ggcgatgcgg gcagcaatgc gttcaatgtc
    15901 cgcaatgttt ttcagacggc attggagggg tttgtattgg ctttccagcg cggcaacggc
    15961 ttcttggcgc gctcggatgt gggcgcggtt gcgtaaaggg tggtgcagcc agagagccaa
    16021 gaggcggctg cccatatggg tagcgcaaag gtcgagcgtg gacatcaggg tcggcgattt
    16081 tttgccggag agggtttgcg tgatttcgag attgcggcgc gtggcggcat ccataccgat
    16141 atattggctg tcggtttcga gcgacaggcc gtccaaatgt tgcggcatca ggttttgcgt
    16201 cagacggata tagttcaaca gtgcacctgc cgcgccaatc gcaacggcgt gttctttgcc
    16261 gtccaaaccg aagccgcgca aatcctggca gccgaaatat tccgtcagca gtttttcccc
    16321 cgcgtcggcg gcaaactgcc acgcgttcag gcgcgtaaca cccgatgccg tctgaagttg
    16381 cggtgcgttt ttactgtcag gcaacagaat ttccgccgcc tgcaggcgcg ccagttcgtc
    16441 gtccaattta tccacagttg tcagcttggt tttgaattcg ccgctttgca gcgatgccca
    16501 cgccaaaccg atgtattttt tgtcggggga cacggcaacg atgcggttgg tttccttgtc
    16561 ttccagcaat gcggaatcgg tcagcgtgcc gggcgttacg atgcgcacga ctttgcgctc
    16621 caccggtcct ttgcctgcgc cgacttcgcc gacctgttcg caaatcgcca cgcttttgcc
    16681 caacttgacc aggcgcgcca gatattgttc ggcggcgtga aacggcacgc ctgccatttt
    16741 gaccggctcg ccatccacct gtccgcgcgt ggtcagggta atatc
//
LOCUS       DAXIFD010000023        16661 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.023, whole genome shotgun sequence.
ACCESSION   DAXIFD010000023 DAXIFD010000000
VERSION     DAXIFD010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16661
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.023"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            119..1294
                     /locus_tag="ACFOCN_000577"
     CDS             119..1294
                     /locus_tag="ACFOCN_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HFC6969773.1"
                     /translation="MLNTSLSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEF
                     AAFAGTRYAVALSNGTLALDVALKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFA
                     DVDLNSQNISAETVKAVLTPNTKAIIVVHLAGMPAEMDGIMALAKEHDLWVIEDCAQA
                     HGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYD
                     AVYHREHAPGFRWLHESFGTNWRMMEMQAVIGRIQLKRLPEWTARRQENAAKLAESLG
                     KFASIRLVEVADYIEHAQYKFYTFVKPEHLKDGWMRDRIVNELNARKVPCYQGSCSEV
                     YLEKAFDNTPWRPKERLKNAVELGDTSLMFLVHPTLTDGEIAFCKEHIEAVLTEATR"
     gene            1342..3252
                     /gene="pglD"
                     /locus_tag="ACFOCN_000578"
     CDS             1342..3252
                     /gene="pglD"
                     /locus_tag="ACFOCN_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent dehydratase PglD"
                     /protein_id="HFC6969774.1"
                     /translation="MTLETLLALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSNEW
                     FDPANWQSFLLTAPLTIGLFVRMGLYRAVTRFISFRILSTALAGSLASAVLFFLNTLI
                     FEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEA
                     VKQMREYSAAAFVDDDPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQ
                     RRRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMSAD
                     IEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELRETCIQKRLD
                     TEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLEC
                     ALAATTSGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGN
                     VLGSSGSVVPLFEKQIAEGGPLTLTHPEITRYFMTIPEAAQLVIQAGAMGTGGDVFVL
                     DMGESVKIIDLARQMITLSGLKPNTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRK
                     TAHPRIMTADEAMLPWHELSVLLDRIRSACDRYDQQAIRTLLINAPTGFAPSDGICDL
                     LWVRETHRKNAV"
     gene            3308..4600
                     /locus_tag="ACFOCN_000579"
     CDS             3308..4600
                     /locus_tag="ACFOCN_000579"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HFC6969775.1"
                     /translation="MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARI
                     PEIDRAFADIFSKLAAEHAVENIGNYSNPQGDAALIDALTAFLNREYGWNLTADNIAL
                     TNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPK
                     IENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDSEMARLD
                     ALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAA
                     PEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQVIRPFYRNQAQTAVSLL
                     KRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTR
                     DYPHAGECIRMSIAQDAQTLEKGIAAIGKTVRKLYDNV"
     gene            complement(4652..5488)
                     /locus_tag="ACFOCN_000580"
     CDS             complement(4652..5488)
                     /locus_tag="ACFOCN_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HFC6969776.1"
                     /translation="MIDLHCHSIVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIA
                     EARAEADRLGLRLINGVEISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRLE
                     AIAAKLEKRGISGAYDGALALAANKEMVSRTHVAEFLIRVGHVKNKQQAFTKYLGDGK
                     SCAVRHEWATLEDCVSAVNGAGGLAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVH
                     SGNCCKNDRLNYALLAERFGMLASAGSDFHRLNDFSGGILGACPELPENCRPVWAHFS
                     RY"
     gene            complement(5798..6199)
                     /locus_tag="ACFOCN_000581"
     CDS             complement(5798..6199)
                     /locus_tag="ACFOCN_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969777.1"
                     /translation="MAIYDLNEIVTSAALGMYKGKWQNMDFEQVLQDIVQETDFTYSW
                     EYGENWAIFCLNEKSVGMLCKQIPFAIIENEKLSQKIYQEYPWILTQQVYHFDTDKIL
                     LNKYVCKLTIGIMSAISQEPISLQDLYVDTV"
     gene            complement(6304..6507)
                     /locus_tag="ACFOCN_000582"
     CDS             complement(6304..6507)
                     /locus_tag="ACFOCN_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase-like domain-containing protein"
                     /protein_id="HFC6969778.1"
                     /translation="MDTTLKNKAEAILGEPLLDEPIRPESWECCGSDCGEACIQTIYW
                     ADKARYDAQRRKLKEAGWSDDAV"
     gene            complement(6485..6718)
                     /locus_tag="ACFOCN_000583"
     CDS             complement(6485..6718)
                     /locus_tag="ACFOCN_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6969779.1"
                     /translation="MEATVYLEDNEYIALCDLLKLAGLAESGGQAKAFIAEGLVLRNG
                     ETETRKTAKIRGGEVIEFDGARLEIADGYDPEE"
     gene            6884..10318
                     /gene="dnaE"
                     /locus_tag="ACFOCN_000584"
     CDS             6884..10318
                     /gene="dnaE"
                     /locus_tag="ACFOCN_000584"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HFC6969780.1"
                     /translation="MTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDL
                     MNEFGLVKFYKACRSAGIKPVGAADVWIGNPDAPDKPFRAMLIIRNDAGYLRLSELLT
                     AAYVGKDRNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKY
                     AAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEA
                     RVCIAGGWVLTDKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITL
                     GKNFLPLFPTPDGLSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELN
                     IIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLF
                     ERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVG
                     RVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEAEEADELITLAKKLED
                     LTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRN
                     LTIIEMAQNNIKNTTGDIIDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTA
                     HTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQ
                     VMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNY
                     MEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCR
                     ANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLL
                     DFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMDNADQKAANANQGGL
                     FDMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSK
                     LKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVEIMVGGQTLENCADCLKADQ
                     VLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLSLALAPHHDIGGLVQLLA
                     AHQLPDTPRIPLQLSYANEKASGRLQVPPKWTVTPSSALFGELETLLGSRSVRVNW"
     gene            10361..10615
                     /locus_tag="ACFOCN_000585"
                     /pseudo
     CDS             10361..10615
                     /locus_tag="ACFOCN_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742773.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(10752..11684)
                     /locus_tag="ACFOCN_000586"
     CDS             complement(10752..11684)
                     /locus_tag="ACFOCN_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6969781.1"
                     /translation="MLSQLEYGIAKENRPNRQADRFAGSVLPLAASLTHKPNIMKPIP
                     TDTFQPAILPQAFETEIKSTCTGRIYRIQTATLGEMPSEGYPVLFVLDGEAFFPALFN
                     IMQSLMPNPVTRSNAPCLIVGIGYTTGSVRDLAQRAADYTPPLGDNATADERQQFGQA
                     DRFAAFIDSELTAFLESRYTLNRNETAVFGHSFGALFGLYSLLSHRRFRRHWLVSPSI
                     WWHNRRILDFMPSENRLNGIDVCLNIGALERGSDCKRREERDMAGQAEQMAAELDRHG
                     AAVFFREYPNADHGNVPFYSLTDCVEYLRKAWQR"
     gene            complement(11754..13910)
                     /locus_tag="ACFOCN_000587"
     CDS             complement(11754..13910)
                     /locus_tag="ACFOCN_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HFC6969782.1"
                     /translation="MSVFRINMTAATVLAALSSSVFAAQTADLETVHIKGQRSYNAIA
                     TEKNGDYSSFAATVGTKIPASLREIPQSVSIITNQQVKDRNVDTFDQLARKTPGLRVL
                     SNDDGRSSVYARGYEYSEYNIDGLPAQMQSINGTLPNLFAFDRVEVMRGPSGLFDSSG
                     EMGGIVNLVCKRPAKAFQGHAAAGFGTHKQYKAEADVSGSLNSDGSVRGRVMAQTVGA
                     SPRPAEKNNRHETFYAAADWDINPDTVLGAGYLYQQRHLAPYNGLPADANNKLPSLPQ
                     HVFVGADWNKFKMNSHDVFADLKHYFGNGGYGKVGMRYSDRDADSNYAFAGSKLGMKT
                     LAGRPGCNTADDKACAVGLGTEIKQKALAFDASYSRPFRLGNTANEFVIGADYNRFRS
                     TNEQGRTTLYARGGLALNEFRSIPQVDLIANARKGVRGYSHTVATENLDEFGIYGKST
                     FHPADGLSLIGGGRLGHYKIELGEGKTLHKASKTKFTGYAGAVYDLNDNNSLYLSLSQ
                     LYTPQTNLDADGKLLKPRQGNQFEVGYKGSYMDDRLNARVSFYRMKDKNAAAPLNPNN
                     KKTRYAALGKRVMEGVETEISGAVTPKWQIHAGYSYLHSQIKTASNSRDDGIFLLMPK
                     HSANLWTTYQVTPELTIGGGVNAMSGITSSAGMHAGGYATFDAMAAYRFTPKLKLQIN
                     ADNIFNRHYYARVGGANTFNIPGSERSLTANLRYSF"
     gene            14070..14729
                     /locus_tag="ACFOCN_000588"
     CDS             14070..14729
                     /locus_tag="ACFOCN_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HFC6969783.1"
                     /translation="MTTPKLIIFDWDGTLADTTQPIIDTMRRSFAECGFPPPEAERVR
                     SLIGYSLPEIIRDLLEMPSETAVADIARTYSAHYLNPNNRNMTLFPDALPCLDKLKAQ
                     GFRLAVATGKGRAGLDNAISQTATGGYWLATACAGEYPSKPSPEMVFGICGELGFDPK
                     EALVVGDTAHDLHMAANAGAAAVGVATGAHSREQLLSAPHLAVLDGLSELPGFLARHY
                     A"
     gene            complement(14816..15784)
                     /gene="ispH"
                     /locus_tag="ACFOCN_000589"
                     /gene_synonym="lytB"
     CDS             complement(14816..15784)
                     /gene="ispH"
                     /locus_tag="ACFOCN_000589"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HFC6969784.1"
                     /translation="MNEKTIILANPRGFCAGVDRAISIVERALEEFGAPIYVRHEVVH
                     NKFVVDNLREKGAVFIEDLAEVPPGATLVYSAHGVSKAVRQEAAERGFRVFDATCPLV
                     TKVHKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGKMLLVETVGDVAKLEVRNPD
                     KLAYVSQTTLSVDETKDIIAALNARFPNIRNPHKEDICYATTNRQTAVKELAEQCDIV
                     IVVGSPNSSNSNRLREVAASRGIDAYMVDNAGYLQRAWFEGKNKVGVTAGASAPEVLV
                     REVLATIRGWGHETVREGEGAEESIVFVLPKELRREGETKPDLCKR"
     gene            complement(15813..16340)
                     /gene="lspA"
                     /locus_tag="ACFOCN_000590"
     CDS             complement(15813..16340)
                     /gene="lspA"
                     /locus_tag="ACFOCN_000590"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFC6969785.1"
                     /translation="MVLFYRLLKNMSSSVSSKTRYWVLALAAIVLDQWSKWAVLSSFQ
                     YRERVNVIPSFFDLTLVYNPGAAFSFLADQGGWQKYFFLVLAVAVSAYLVRAILRDEF
                     ATLGKTGAAMIIGGALGNVIDRLIHGHVVDFLLFYWQNWFYPAFNIADSFICVGAVLA
                     VLDNIVHRKTQEEKY"
BASE COUNT         3825 a         4817 c         4333 g         3686 t
ORIGIN      
        1 acccccgtac agaccgattt tgacaacacc tgcggcgcgc gcccgattct tcggaacacg
       61 ccccccttca gacggcatag ggtcggaaat gccgtctgaa cccgacggac aaaccatcat
      121 gctgaacacc tccctttccc cgtggccctg cttcacccaa gaagaagccg atgccgtttc
      181 caaagtcctg ctgtccaaca aagtcaacta ctggacggga aacgaatgcc gcgaatttga
      241 aaaagaattt gccgcctttg ccggcacgcg gtacgccgtc gccctttcca acggcacgct
      301 ggcactcgat gtcgcgctca aagcaatggg cataggcgcg ggcgacgatg tgattgttac
      361 ttcgcgcacc ttcctcgcct ccgcctcctg catcgtgaac gcaggcgcaa accccgtgtt
      421 tgccgacgtg gatttgaaca gccaaaacat cagcgcggaa accgtcaagg ctgtgctgac
      481 cccgaatacc aaagcgatta tcgtggttca ccttgccggt atgcctgccg aaatggacgg
      541 cattatggct ttggcaaaag aacatgattt gtgggtgatt gaagactgcg cccaagcgca
      601 cggcgcaaaa tacaaaggca aatccgtcgg ctctatcgga cacgtcggcg cgtggtcgtt
      661 ctgccaagac aaaatcatga ccaccggtgg cgaaggcggt atggttacga ccaacgacaa
      721 aaccctgtgg gaaaaaatgt ggtcgtacaa agaccacggc aaaagctacg atgccgtgta
      781 ccaccgcgaa cacgcgcccg gtttccgctg gctgcacgaa agtttcggca caaactggcg
      841 tatgatggaa atgcaggcgg tcattggccg catccagctc aaacgcctgc ccgaatggac
      901 agcacgccgc caagaaaacg ctgccaaact ggctgaaagc ttgggcaagt ttgccagcat
      961 ccgcttggtt gaagtcgccg actacatcga acacgcgcaa tacaagttct acaccttcgt
     1021 caaacccgaa cacctcaaag acggctggat gcgcgaccgc atcgtgaacg aactgaacgc
     1081 gcgcaaagtc ccctgctatc aaggcagctg ctccgaagtc tatttggaaa aagccttcga
     1141 caacacacct tggcggccga aagagcgttt gaaaaacgcc gtcgaactgg gcgacaccag
     1201 cctgatgttc ttagtacatc cgacgctgac cgacggcgaa atcgcgttct gcaaagaaca
     1261 catcgaagcc gtattgaccg aagccacacg ataacccttc agacggcata tgccgcctga
     1321 aagcacatac cgccccacga tatgactctg gaaaccctgc ttgccctacc gcgcaacatc
     1381 aagaaaatct gtttcctcat acacgatttt ctgatgattt tcattgcctt ttggtttacc
     1441 caaagcctga aggccgacta ctcgaacgaa tggttcgacc ctgccaactg gcagtctttc
     1501 ctattgaccg cgccgttgac catcggcctg ttcgtcagaa tggggctcta ccgtgccgtt
     1561 acacgcttca tcagcttccg catcctctcc accgcgctgg caggcagcct cgcctccgcc
     1621 gtattgttct tcctcaacac attgattttt gaagaaaggc tgcgcctcgc cctgccgatt
     1681 gtctatttct tactgctgtt tgtttccgtg accggctcgc gtatggtttt gcgcggactg
     1741 ttgtccgaac accccaaaaa acagatgatc cctgtcatca tttacggcgc gggacggtcg
     1801 ggcagacaac tgcttgaggc cgtcaaacaa atgcgcgaat attccgccgc cgcctttgta
     1861 gacgacgacc ccaaactgtg gcacaccgtc atctacgacc ttgccgttta ccagcccgat
     1921 gccatcgcct tcctcatcga acgctacggc gtggaaaaaa tcctgctcgc catccccggc
     1981 gcgacccagg aacaacgccg ccgaatcatc aacaaactgg aagcctatcc gtgcgaagtg
     2041 ttgaccattc ccggaatgaa agacctgatg gacggaaaaa tcagcatcgg cacgctcaaa
     2101 aaaatctctg tgtccgacct gctcgggcgt gattccgtcg cgcccgacga ccgcctgatg
     2161 agtgccgaca tcgaaggcaa aaccgtcatg gtaaccggcg cgggcggctc catcggttcg
     2221 gaactctgcc gccagattat ccgccgccgc cccgaaaagc tgctgctgtt cgagttatcc
     2281 gaattcgccc tgtacgccat cgaaaaagaa ttgcgcgaaa cctgcatcca aaaacgcctc
     2341 gacaccgaaa tcctgccctt tctcggttcg gtgcaaaacc gcacgctgct cgaacacgtc
     2401 atgaccgcct tttccgttgc gaccgtctat cacgccgctg cctacaaaca cgtccccatg
     2461 gtcgagttca acaccgtcga aggcatacgc aacaacatct tcggcacact cgagtgcgcg
     2521 cttgccgcca cgacatcggg cgtaagaact ttcgtcctca tctccaccga caaagccgtc
     2581 cgccccacca acaccatggg tgccagcaaa cgcatggcgg aactctgcct tcaggcactc
     2641 gccgccgaac ccggacaaaa aacccgcttc agcatggtac gtttcggcaa tgttttaggt
     2701 tcgtccggct ccgttgtccc gctgtttgaa aaacagattg cagaaggcgg cccgcttacc
     2761 ctgacccacc ccgaaatcac acgttatttc atgaccatac ccgaagccgc ccaactcgtc
     2821 atacaggcag gcgcgatggg tacgggcggc gacgtattcg tcctcgacat gggtgaatcc
     2881 gtcaaaatca tcgaccttgc ccgccaaatg attaccctaa gcggcctcaa acccaacaca
     2941 cccgaacaac ccgacggcga catcgaaatc ctcattaccg gactgcgtcc cggcgaaaaa
     3001 ctctacgaag agctgctcat cggcgacaac gtccgcaaaa ccgcccatcc gcgcattatg
     3061 acggctgacg aggcgatgct gccgtggcac gagctctctg tcctgctcga ccgcatccgt
     3121 tcggcctgcg accgttacga ccagcaggca atccgcaccc tgctcatcaa cgccccgacc
     3181 ggctttgccc cgagcgacgg catctgcgac ctgctttggg tacgagaaac acacagaaaa
     3241 aatgccgtct gaaccttcag acggcataac gtacaaacca acctacctta cacacacgga
     3301 gtttgacatg cagttctcag cattcggcga aaaattcacg caacacagcg gcatcctcca
     3361 actgatggac gacctcggcg acgcgctcaa aagcgacaag cccgtcaata tgctcggcgg
     3421 cggcaatccg gcgcgcattc cggaaatcga tcgggcgttc gccgacatat tctccaaact
     3481 ggcggcggaa cacgctgtcg agaacatcgg caactactcc aatccccaag gcgatgccgc
     3541 gctgattgac gcgctgaccg ccttcctcaa ccgcgaatac ggctggaacc tgaccgccga
     3601 caatatcgcg ctgaccaacg gttcgcaaaa cgcgtttttc tatttattca acctcttcgg
     3661 cggcaaattc aacctttcag acggcacatc cgcagaaaaa gccattttgt tgccgctcgc
     3721 gcccgaatac atcggctatg ccgacgtgca tgtcgaaggg cagcacttcg tttccgtcaa
     3781 gcccaaaatc gaaaacgtcg aacacgaagg cgaagcaggc ttcttcaaat accgcgtgga
     3841 ctttgacgca ctggaaaacc tgcccgaact caaagcgggc aaaatcggcg cgatttgctg
     3901 ttcgcgcccg accaacccga ccggcaacgt gctgaccgac agcgaaatgg cgcggctgga
     3961 cgctttggcg cgtgaacacg ggattccgct gattatcgac aacgcctacg gaatgccgtt
     4021 ccccaacatc atttacagcg acgtaacgct gaattggcac gaaaacatca tcctctgctt
     4081 cagcctttcc aaagtcggcc tgccgggcgt tcgcaccggc atcatcgtcg ccgcgcccga
     4141 agtcgtcaaa gccgtcagca gcctgaacgc gattgtgaac cttgccccca cgcgcttcgg
     4201 cgcggccatc gccgccccgc tgctggaaag cggcgagatg aaacggcttg ccgaccaagt
     4261 catccggccg ttttaccgca atcaggcgca aaccgccgtc tcgctgctca agcgcgagct
     4321 gggcgcgtac ccgatgaaaa tccacaaacc cgaaggcgcg attttcctgt ggctctggtt
     4381 tgaaaacctg cccgtttctt cgcaaaccct gtacgaaatg ctcaaagccg aaggtacgct
     4441 gattattccg ggcgagcatt tcttcgtcgg catcgacacg cgggattacc cgcacgcggg
     4501 cgagtgcatc cgcatgagca tcgcgcagga cgctcaaacg ctggaaaaag gcatcgccgc
     4561 catcggcaaa accgtccgaa aactgtacga caacgtttaa accgcaaaaa atgccgtctg
     4621 aaaggttttc agacggcatt tttatctgca ttcaatatcg ggaaaaatgc gcccacaccg
     4681 gcctgcagtt ttccggcagt tcgggacacg cgccgagaat gccgccgcta aagtcgttta
     4741 aacggtggaa gtcgctgccc gcgctggcga gcataccgaa gcgttctgcc aaaagcgcgt
     4801 agttgaggcg gtcgtttttg cagcagttgc cgctgtggac ttcgatgcct gcgccgccga
     4861 ggtttttaaa ttcttcaaac agattgcgct tggcggtggc ggacaaatca taacgcatcg
     4921 gatgggcgat gaccgccaac ccgcccgcgc cgttgacggc ggagacgcag tcttccagcg
     4981 tcgcccattc gtggcggacg gcgcaggatt tgccgtcgcc caagtatttg gtgaacgcct
     5041 gctgcttgtt tttgacgtgt cccacccgaa tgaggaactc ggcgacgtgt gtgcggctga
     5101 ccatttcttt gtttgccgcc agcgcgagcg cgccgtcgta tgcgcccgaa atgccgcgtt
     5161 tttccagctt ggcggcgatg gcttcgaggc gtttcagacg gccttgccgc acttgcgcca
     5221 acaggttttg caggttttcg tcttgttcgt caaagtctaa gccgacaacg tgtatggtac
     5281 gcccgcgcca cgttacggag atttccacgc cgttaatcag gcgcaaaccg agcctgtcgg
     5341 cttcggcacg cgcttcggcg atgccgccgg tgtggtcgtg gtcggtcaac gccagcagcg
     5401 tgcagccgtt ttgatgcgcg aggcgcacga cttcggcggg ggaaagcata ccgtcggaaa
     5461 cgatggaatg gcagtgcagg tctatcatgg ggtgttatgt gtgtggtgaa tgaaggtcgg
     5521 gatgtttcaa tgttgttggg cagtgtggcg gcggcggtca ttttaaaaaa caggtgtatg
     5581 gcaaatgcaa aggaaaagcc gctatgccgt cattcccaac ccccaaatgt acggatagag
     5641 ccagtaggga tgggtacatt atttgtttgc attattagtt atcctgctgt atccattaaa
     5701 tcatatgctt caattaattg ttgttctagc tcttgtacca attttggatt gcgaattcct
     5761 aacgcaattt caaacagcga gttctcacta tgtacatcta cacagtatct acataaagat
     5821 cttgtaaaga tataggttct tggctgatgg cactcattat tccaatagtt aatttgcata
     5881 catatttgtt taataaaatt ttatctgtat caaaatgata aacttgttga gttagtatcc
     5941 aagggtattc ttggtatatt ttctgtgata atttttcatt ctctataatc gcgaaaggta
     6001 tctgtttaca taacatacca acagactttt cgtttagaca gaaaatagcc caattttccc
     6061 catattccca agagtatgta aaatctgttt cctgaacaat atcttgtaaa acttgctcaa
     6121 aatccatgtt ttgccattta cctttataca tacctaatgc ggcactggtt actatttcgt
     6181 ttaagtcata aatagccatt tatgttcctt gctaatttct aggtgagaca tgtataggac
     6241 tgagaccagt atgcccatta ggttcccctc tatacacatt aatagtagat gttggttccg
     6301 ttttcagacg gcatcgtccg accaacccgc ttctttcaat ttccgccgtt gcgcgtcgta
     6361 gcgggcctta tccgcccaat aaatcgtctg aatgcacgcc tcgccgcagt cgctgccgca
     6421 acattcccac gactcggggc ggataggttc gtctaaaagc ggttcgccca agatggcttc
     6481 ggctttattc ttcagggtcg tatccatcgg caatttccaa gcgtgcgccg tcaaattcaa
     6541 tcacttcgcc gccgcgtatt ttggcggttt tacgggtttc ggtttcgccg ttgcgcaaca
     6601 ccagcccttc ggcgataaac gcttttgcct gtccgccgct ttcagcaaga ccggccagtt
     6661 tcaacaggtc gcataaagcg atgtattcat tatcttcaag atagactgtt gcttccatca
     6721 ttcaatcctt ttcaataagg gcgatatttt aacatggccg tctgaaagaa agcccccttc
     6781 tgtttgattt gctttatcca accccattac atttgatttt cagacggcct ttagctgcca
     6841 accctgctac aatacgcctt ttattgttca cgccgatttt gccatgaccg agccgaccta
     6901 catccccctg cgcctgcata ccgaattttc gattaccgac ggtatggtgc ggattaaaaa
     6961 actgattgcc aaagcgcagg aatacggttt gcctgctttg ggcatcagcg atttgatgaa
     7021 cgaattcggt ttggtgaaat tttataaagc ctgccgcagc gcggggatta agcccgtcgg
     7081 cgcggcggac gtatggatag gcaatccgga tgcgcccgac aagccgttcc gtgctatgct
     7141 gattatccgc aacgatgcgg gctatctgcg cttgagcgag cttttgacgg cggcttatgt
     7201 cggcaaagac cgcaatgtcc atcatgcgga actcaatccc gaatggctgg aaaacggcga
     7261 caacagcggc ttgatttgtt tgagcggcgc gcattacggc gaagtgggcg tgaatctctt
     7321 gaacggcaac gaagacgcgg cgcgggcggc ggcgttgaaa tatgcggcgt ggtttcccga
     7381 tgcgttttat ctggagttgc aacgcctgcc cgagcgtccc gaatgggagg cttgcgtttc
     7441 gggcagcgtg aagctggcgg aggaactggg tttgccggtg gtggcgacgc atccgacgca
     7501 gtttatgagc cgcgacgatt tcaacgcgca cgaggcgcgg gtgtgtatcg caggcggctg
     7561 ggtattgacg gacaagaaac gtccgcgcga tttcacaccg agccagtttt tcattccgcc
     7621 ggaaacgatg gccgaacgtt tcgccgattt acccgaagcc ctcgaaaaca cggtggaaat
     7681 tgccaaacgc tgcaatctgc acatcacatt gggcaaaaac ttcctgcccc ttttccccac
     7741 gcccgacggt ttatcactcg atgactatct catcaaactc tccaatgagg gcttgcagga
     7801 acgcatggtt cagctttatc ccgacgaggc ggagcgtgcg gaaaaaatgc cggaatatca
     7861 ggaacgtttg gattttgagc tgaacatcat catccagatg aaattccccg gctatttcct
     7921 tatcgtacaa gactttatca actgggcgaa aacacacggc tgcccggtcg ggccgggacg
     7981 cggttcgggc gcgggttcgc tggtggcgta ttcgctgaag attaccgacc tcgatccgct
     8041 gaaatacgcg ctgctgttcg agcgtttcct aaaccccgaa cgcgtttcta tgcccgactt
     8101 cgacgtggac ttctgtcagg caaaccgcgg ccgcgtgatt gaatatgtac gcgaaaaata
     8161 cggtgcggaa gcagtcagcc agattgttac cttcggcacg atgtcgtcca aagcagtgat
     8221 tcgcgacgtg gggcgcgtac tggaactgcc gtttatgctg tgcgacaaac tgtccaagct
     8281 gattccgttg gaagccaaca aacctttggg tttggacgac gcgatgaagg cggagccgca
     8341 gattcaggaa ttaatcgaag cggaagaagc ggacgaactg attacgctgg cgaaaaagct
     8401 ggaagatttg acgcgcggtt tgggtatgca cgcgggcggc gtgttgattg cgccgggcaa
     8461 gatttccgat tacagccccg tgtatcaggc ggacgaatcc gcctcgcccg tatccatgta
     8521 cgacaagggc gacgtggaag acgtgggttt ggtgaaattc gactttttag gtctgcgcaa
     8581 cctgaccatc atcgaaatgg cgcagaacaa catcaaaaac accaccggcg acatcatcga
     8641 tgtcggcaaa attccgcttg acgaccaggt tgcctaccaa atcttccgcg atgcgaacac
     8701 caccgccgtg ttccagttcg agtcgacagg catgaagaaa atgctgaaaa cggcgcatac
     8761 gaccaagttt gaagaactga ttgccttcgt atcgctctac cgacccggcc cgatggacaa
     8821 tattcccgac ttcgtcgcgc gtatgaaagg tcaggaattc caatacatcc acccgctact
     8881 cgaaggcatc ctcgcaccaa cctacgggat tatggtgtat caggaacaag tgatgcaggc
     8941 ggcgcagatt atcggcggct actcgctcgg cggcgcggac ctgctgcgcc gcgccatggg
     9001 taagaaaaag cccgaagaaa tggtgaaaca ccgcgaaatc ttcgccgaag gcgcggcaaa
     9061 acaaggcatt tcgcgcgaaa aatccgacga aatcttcaac tacatggaaa aattcgccgg
     9121 ctacggtttc aacaaatccc acgctgccgc ctacgccctg atttcctacc agaccgcatg
     9181 gctcaaagcc cactaccccg ccgaatttat ggcggcgacc atgtcgtctg aattggacaa
     9241 caccgaccag ctcaagcatt tctacgacga ctgccgtgcc aacggcatcg agttcctgcc
     9301 gcccgacatc aacgaatcag actaccgctt cacgccgtat ccgaacatga aaatccgcta
     9361 cgcgctcggc gcgattaaag gcacgggcga agccgccgtc gaatccatca ccgccgcgcg
     9421 gcaaagcggc ggcaagttta ccggcctctt ggacttctgt gagcgcgtcg gcaaagaaca
     9481 catgaaccgc cgcaccctcg aagctctgat acgcggcggc gcattcgaca gcatcgaacc
     9541 caaccgcgcc atgctcttgg cgaacatcga cctcgctatg gacaacgccg accaaaaagc
     9601 cgccaacgcc aatcagggcg ggcttttcga catgatggaa gacgccatcg aaccggtgcg
     9661 gctcatcgac gcgccgatgt ggagcgaatc ggaaaaactc gccgaagaaa aaaccgtcat
     9721 cggcttttac ctgtccggcc acccgttcgg cccgtatgcc caagaagtcc gccaaatcgc
     9781 cccgcagaaa ctgtcgaaac tcaaaccgca agacagcgtg cgcctcgccg gattcgttac
     9841 cgccgtacgc accatgatgg gcaagcgcgg caaaatcgcc ttcgtcagcc ttgaagattt
     9901 gagcggacag gttgaaatca tggtcggcgg tcagacgttg gaaaactgcg ccgactgcct
     9961 caaagccgac caagtgctga ttatcgaatc caaagtcagc cgcgacgact acggcggcgg
    10021 cgacggactg cgtattctgg caaaccaagt catgaccctg caaacggcac gcgaacgcta
    10081 cgcccgcagc ctcagcctcg ccctcgcccc gcatcacgac atcggcggac tggtacaact
    10141 gctcgccgcc caccaactgc ccgacacgcc gcgcatcccg ctgcaactgt cgtatgccaa
    10201 cgaaaaagcg tcgggcaggc ttcaagtgcc gccgaaatgg acggttacac cgagctccgc
    10261 attgttcggc gaactggaaa cattgctcgg cagccggtcg gtgcgcgtca actggtaacc
    10321 aaaaatagaa atgccgtctg aagcccaaaa accggtttca ttcgtacttt attcgaatga
    10381 ttgaataaaa gtaactgcca agaaaaacgt attttttggt tatttcgcca gtctaaatag
    10441 agcaaccggg acgattgata tccgtgtgca tgacacagac agcaccaaag ggaaaaacgg
    10501 cattttccaa agtatcggta tcaaaaccgc cctttcactc caaaaatacc aaatcgacaa
    10561 accgggcaaa gaaatcagac cgtgccgcct gaaaaaacgc ccacccgtcc gttaaattaa
    10621 cctatccctg tttcagacgg cctgaagcag ggatttttat atcaaaataa aatgagaaag
    10681 ggagcaataa cccttaggta gctcttgtta ttttccgatg caaaacaaag cagtcatata
    10741 tttaattccc cctacctctg ccaagccttc ctcaaatatt cgacgcaatc ggtcagcgag
    10801 tagaacggga cattgccgtg gtcggcattc ggatattccc ggaaaaagac ggcggccccg
    10861 tgcctgtcta actctgccgc catttgttcg gcctgccctg ccatatcgcg ttcttccctg
    10921 cgtttacaat cgctaccccg ttctagcgcg ccgatgttga ggcagacatc gatgccgttt
    10981 agccggtttt cagacggcat aaagtcgagt atccgcctgt tgtgccacca aatcgatggg
    11041 gatacgagcc aatgccgtct gaaacggcgg tgggaaagca gggaatacag tccgaacagt
    11101 gcgccgaacg agtgtccgaa tacggcggtt tcattgcggt tgagggtgta gcggctttct
    11161 aaaaaggcgg tcagctcgct gtcgataaag gcggcgaagc ggtctgcctg tccgaactgc
    11221 tgccgttcgt ctgctgtggc gttgtctcca agcggcggcg tgtagtcggc ggcacgttgt
    11281 gccaaatcgc gcacactgcc tgtcgtgtag ccgataccga caatcaggca gggggcgttg
    11341 cttcgggtaa cggggttggg catcagcgac tgcatgatgt tgaaaagtgc ggggaaaaag
    11401 gcttcgccgt ccaaaacgaa gaggacggga tagccttcag acggcatttc gccgagtgtc
    11461 gccgtctgaa tccgatagat tcgccccgtg caggtggatt tgatttcggt ttcaaaggct
    11521 tggggcagta tggcaggttg gaatgtgtcg gtcggtatgg gtttcatgat gttcggcttg
    11581 tgggtcagac tggcggcaag cggtaaaacc gaaccggcaa agcggtctgc ctgccggttc
    11641 ggtctgtttt ccttcgcaat gccatactcc agttgtgaga gcatagggta tgcagcgcag
    11701 cttgttgtgg tttgatgatg ctgcggctgc cgtttcagac ggcatattgg tctttaaaaa
    11761 ctgtaacgca ggtttgccgt caggctgcgc tccgaaccgg gaatgttaaa ggtgttcgcg
    11821 ccgccgacgc gggcgtagta atggcggttg aagatgttgt cggcgttgat ttgcagcttc
    11881 agcttgggcg tgaagcggta tgccgccatc gcatcgaacg tggcataacc gcctgcatgc
    11941 atccctgcag atgaagtaat gccgctcatc gcgttcacgc cgccgccgat ggtcagctcg
    12001 ggcgtaactt ggtaagtcgt ccacaggttt gcgctgtgtt tgggcatcaa taggaagatg
    12061 ccgtcgtcgc gtgaattgga ggcggttttg atttggctgt gcagatagct gtaacctgca
    12121 tggatttgcc atttcggtgt aaccgcgccg ctgatttcgg tctcaacgcc ttccatcacg
    12181 cgtttgccca atgcggcgta acgggttttt ttgttgttcg ggttcaacgg tgcggcggcg
    12241 tttttgtctt tcatgcggta gaacgaaact cgggcattga ggcggtcgtc catgtagctg
    12301 cctttgtaac cgacttcaaa ctggttgcct tggcgcggtt tgagcagctt gccgtcggca
    12361 tcgaggttgg tttgcggtgt gtagagctgg gacaggctca ggtagaggct gttgttgtcg
    12421 ttcaagtcgt aaaccgcgcc tgcgtagccg gtgaacttgg ttttgctggc tttgtgcagg
    12481 gttttgcctt cgcccaactc gattttatag tgtcccaaac gtccgccgcc gataagcgac
    12541 agcccgtcgg caggatggaa ggtggatttg ccgtaaatgc cgaattcgtc gaggttttcg
    12601 gtagcgacgg tatggctgta accgcgcacg cctttgcgcg cgttggcaat caaatcaacc
    12661 tgcggtatgc tgcggaactc gtttaaagcc aggccgccgc gtgcatataa agtagtacgg
    12721 ccttgttcgt tggtgctgcg gaagcggttg taatcggcgc cgatgacaaa ttcgttggcc
    12781 gtattgccca agcggaaagg cctgctgtag ctggcgtcaa acgcgagggc tttttgtttg
    12841 atttctgtac ccaaacccac cgcgcaggct ttgtcgtcag ccgtattgca gcccgggcgg
    12901 cctgccaggg ttttcatgcc cagcttgctg ccggcaaagg catagttgga gtcggcatcg
    12961 cggtcggaat agcgcatacc gactttgccg tagccgccgt tgccgaagta atgtttcaaa
    13021 tcggcaaaca cgtcgtggct gttcatttta aatttgttcc aatccgcgcc gacaaatacg
    13081 tgttgcggca gggacggtaa tttgttattg gcatcggctg gcaagccgtt gtacggcgcg
    13141 aggtggcgtt gctggtaaag atagcccgcg cccaaaaccg tatcggggtt gatgtcccaa
    13201 tccgccgccg cgtagaaggt ttcgtgccgg ttgtttttct cggcgggacg cggagacgcg
    13261 ccgacggtct gcgccatcac gcggccgcgc acgctgccgt ctgaattgag gctgcccgat
    13321 acgtccgcct cggctttata ttgtttgtgc gtaccgaacc ctgccgcagc atgaccttgg
    13381 aacgctttgg ccgggcgttt gcacaccaga tttacgatgc cgcccatctc gccgctgctg
    13441 tcgaacaagc cgctcggccc gcgcatcact tccacacggt cgaaggcaaa cagattgggc
    13501 agcgtgccgt tgatactctg catctgcgcg ggcaggccgt cgatgttgta ttcgctgtat
    13561 tcgtaaccgc gcgcgtaaac cgaagagcgt ccgtcgtcgt tgctcaacac gcgcaggccg
    13621 ggcgttttgc gtgccaactg gtcaaacgta tcaacattgc ggtctttgac ctgttgattg
    13681 gtgatgatgc tgacagattg cggaatttcg cgcaaagaag cggggatttt tgtgccgacg
    13741 gtggcggcaa acgagctgta atcgccgttt ttctcggtgg caatcgcgtt gtacgaacgc
    13801 tgacccttaa tatggacggt ttccaaatcc gccgtttgtg cggcaaaaac cgaagacgaa
    13861 agtgctgcca aaaccgtggc ggcggtcata ttgatgcgga aaactgacat aaactgtccc
    13921 attcacataa atgataatgg ttctatttta ataaagcaca acgcggcttg ttcggaaaaa
    13981 catatcgcgc agccgacaaa ttttgtcgaa aatgcgacac gtctgcgttt tccgcataaa
    14041 atctgacttt tcaccgtaaa caacctgcca tgaccacgcc caaactcatc atcttcgact
    14101 gggacggcac gcttgccgat acgacccaac ccatcatcga caccatgcgc cgcagcttcg
    14161 ccgaatgcgg ttttccgccg cccgaagcgg aacgcgtccg cagcctgatt ggctacagcc
    14221 tgcccgaaat catccgcgac ctgctcgaaa tgccgtctga aaccgccgtt gccgacatcg
    14281 cgcgcactta ttccgcgcat tacctcaatc ccaacaaccg caatatgacg ctctttcccg
    14341 atgccctgcc ctgtctggac aagctcaaag cacaaggctt ccggcttgcc gtcgccacgg
    14401 gcaaagggcg ggcgggtttg gacaacgcca tcagccaaac cgccaccggc ggctattggc
    14461 tcgccaccgc ctgcgcgggg gaatatccct ccaaaccctc gcccgaaatg gtattcggaa
    14521 tctgcggcga actggggttc gacccgaaag aggcattggt cgtcggcgat acggcgcatg
    14581 acctgcatat ggcggcaaac gcaggcgcgg cggcagtcgg cgtggccacc ggcgcacatt
    14641 cgcgcgaaca gctccttagc gcaccgcatc tcgccgtatt ggacggtttg tccgaactgc
    14701 ccggttttct tgcacgacat tacgcctgat tggtttccgc atccggcacg cggcaaaaat
    14761 gccgtctgaa gcctgttcag acggcatttg tgttgcccaa acattcaacg cttgctcaac
    14821 gtttgcacaa atcgggtttg gtttcgccct cgcggcgcag ctctttgggc aggacgaaca
    14881 caatgctttc ttccgcaccc tcgccttcgc gtacggtttc gtgcccccat ccgcgtatgg
    14941 ttgccagtac ttcccgcacc aacacttcgg gcgcggacgc gcctgccgtt acgccgactt
    15001 tgtttttgcc ctcaaaccat gcgcgttgca ggtagcctgc attatccacc atatacgcat
    15061 cgattccgcg cgatgccgcc acttcgcgca agcggttgct gttggacgaa ttgggcgaac
    15121 cgaccacaat cacgatgtcg cactgttccg ccagctcttt gacggcggtt tgccggttgg
    15181 tcgtcgcata gcagatgtct tccttgtgcg gattgcggat attggggaaa cgcgcgttca
    15241 gcgcggcgat gatgtctttg gtttcatcga ccgagagcgt ggtttggctg acataggcga
    15301 gtttgtcggg gtttctgact tcgagttttg ccacatctcc gaccgtttcg accaaaagca
    15361 ttttgcccgg cgcaagctgc cccatcgttc cttcaacctc gacgtgcccc ttatgcccga
    15421 tcatgatgat ttcacagtct tgggcatcca gtcgggcgac ttccttatgc actttcgtca
    15481 ccagcgggca agtcgcatca aacacgcgga aaccgcgctc cgccgcttct tgccgcaccg
    15541 ccttcgatac gccgtgtgcc gaataaacca gtgtcgcgcc cggcggcact tccgccaagt
    15601 cttcaataaa caccgcacct ttttcacgca ggttgtccac gacgaatttg ttgtgaacga
    15661 cttcgtggcg cacataaatc ggcgcgccga actcttccaa agcacgttcg acaatactga
    15721 ttgcccgatc cacaccagcg cagaagccgc gcggattggc aaggatgatg gttttctcgt
    15781 tcataagccc ggtatttcgt tttcagacgg catcaatatt tttcttcttg ggttttacgg
    15841 tggacgatgt tgtccaacac cgccaacacc gcaccgacgc agataaagct gtcggcaata
    15901 ttaaaggcgg gataaaacca attttgccaa taaaacaata agaaatcgac gacatgaccg
    15961 tgtatcaggc ggtcgatgac attgcctaac gcaccgccga taatcattgc cgcacccgtt
    16021 ttgccgaggg ttgcaaactc atcgcgcaag atggcgcgta ccaaatacgc gctcaccgcc
    16081 accgccagca ccaaaaaaaa gtatttttgc cagccgccct gatcggcaag gaagctgaac
    16141 gccgcacccg ggttgtacac cagcgtcaga tcgaaaaagg aaggaatgac attgacgcgt
    16201 tcccgatact gaaacgacga cagcaccgcc cacttcgacc actggtccag cacgatggcg
    16261 gcaagtgcca atacccaata gcgcgtttta cttgaaacag atgaagacat atttttcaac
    16321 agccggtaaa agagtaccat tttacccgaa aacccccttt cctgtacccg aaacggcaaa
    16381 tgccgtaatc ttaaaacccg tcattcccga caacaccgta atctcgaaac ccgtcattcc
    16441 cgcgtaggcg ggaatccaga cctgtccgca cagaaactta tcggataaaa acagttgccc
    16501 aaaccccgcg ttctatagtg gattaaattc aaaccagtac ggcattgcct cgccttagct
    16561 caaagagaac gattctctaa ggtgctgaag caccgagtga atcggttccg tactatttgt
    16621 actgtctgcg gcttcgttgc cttgtcctga tttaaattta a
//
LOCUS       DAXIFD010000024        16604 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.024, whole genome shotgun sequence.
ACCESSION   DAXIFD010000024 DAXIFD010000000
VERSION     DAXIFD010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16604
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.024"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(151..573)
                     /locus_tag="ACFOCN_000591"
     CDS             complement(151..573)
                     /locus_tag="ACFOCN_000591"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HFC6969786.1"
                     /translation="MSIMQVEVVSSEQNIYSGEASFVVVPTVQGELGIYPRHEPIMSL
                     VRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDQARAEEAKKAA
                     EAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK"
     gene            complement(584..1981)
                     /gene="atpD"
                     /locus_tag="ACFOCN_000592"
     CDS             complement(584..1981)
                     /gene="atpD"
                     /locus_tag="ACFOCN_000592"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HFC6969787.1"
                     /translation="MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQL
                     LGDGVVRTIAMGSSDGLKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDT
                     DKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
                     LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRV
                     ALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTL
                     AEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLG
                     IYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDK
                     LTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYM
                     VGSIEEAVEKAKTLN"
     gene            complement(2019..2894)
                     /gene="atpG"
                     /locus_tag="ACFOCN_000593"
     CDS             complement(2019..2894)
                     /gene="atpG"
                     /locus_tag="ACFOCN_000593"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HFC6969788.1"
                     /translation="MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARP
                     YAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLA
                     QVQEYRNQGIEEEIVCLGSKGLMACQSIGLNVVASAVNLGDTPKMEMLLGPLTELFQR
                     YEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALA
                     VLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAA
                     ITTELSEIVAGAAAV"
     gene            complement(2919..4466)
                     /gene="atpA"
                     /locus_tag="ACFOCN_000594"
     CDS             complement(2919..4466)
                     /gene="atpA"
                     /locus_tag="ACFOCN_000594"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HFC6969789.1"
                     /translation="MQLNPAEISDLIKAKIENLSVNAEVRTRGTVISVTDGIVRIHGL
                     SDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRE
                     LVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVG
                     RGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAM
                     EHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGG
                     IRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWA
                     INNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFK
                     SSYAYQA"
     gene            complement(4477..5010)
                     /locus_tag="ACFOCN_000595"
     CDS             complement(4477..5010)
                     /locus_tag="ACFOCN_000595"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HFC6969790.1"
                     /translation="MAEFATIARPYAKALFGLAQEKSQIESWLGGLEKLAAVVQEGKV
                     ASLIDRPETNASEKADILIDLVGLKDKELKNFVIVLAGQKRLSILPEVYAQYQDLTLS
                     FNHIKSAVIYSAYPLTDKQVGELAQMLNKRFDSELKISVEIEPELIGGIKVEVGDQVL
                     DLSVQGKLSALYTTMTN"
     gene            complement(5015..5485)
                     /locus_tag="ACFOCN_000596"
     CDS             complement(5015..5485)
                     /locus_tag="ACFOCN_000596"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HFC6969791.1"
                     /translation="MNINATLFAQIIVFFGLVWFTMKFVWPPIAKALDERAAKVAEGL
                     AAAERGKSDFEQAEKKVAELLAEGRNQVSEMVANAEKRAAKIVEEAKEQASSEAARIA
                     AQAKADVEQELFRARESLREQVAVLAVKGAESILRSEVDASKHAKLLDTLKQEL"
     gene            complement(5556..5792)
                     /gene="atpE"
                     /locus_tag="ACFOCN_000597"
     CDS             complement(5556..5792)
                     /gene="atpE"
                     /locus_tag="ACFOCN_000597"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HFC6969792.1"
                     /translation="MGLIAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPL
                     QTKLFLIAGLIDAAFLIGVAIALLFAFVNPFAGA"
     gene            complement(5849..6715)
                     /gene="atpB"
                     /locus_tag="ACFOCN_000598"
     CDS             complement(5849..6715)
                     /gene="atpB"
                     /locus_tag="ACFOCN_000598"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HFC6969793.1"
                     /translation="MAGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDA
                     VFFAVLLGVIGSFLLWRGAKKATAGVPGRFQAAVEILFEFVDDMCKSIIHNEKSRKAV
                     APLGLTLFVWIFLMNAMDMLPVDLLPMVWQGITGNHHALLRVVPTADLNTTLALAVGV
                     LLICIYYNIKIKGLGGWFHELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMY
                     AGELVFLLIALLGGAWAASGSVEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMAL
                     AFVYIGQAHDAH"
     gene            complement(6705..7058)
                     /locus_tag="ACFOCN_000599"
     CDS             complement(6705..7058)
                     /locus_tag="ACFOCN_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HFC6969794.1"
                     /translation="MKQIIILQSAVLSICAAVAFAVWGFAGFLSAVGGGLSYLLPTFV
                     AVLLLKLFRGNPFLQSRMFVFGEILKVVLSLLSMLAVFAIWHQSLVFAPFLMGLLGVS
                     HLVFLVLLRVKDYGR"
     gene            complement(7426..7764)
                     /locus_tag="ACFOCN_000600"
     CDS             complement(7426..7764)
                     /locus_tag="ACFOCN_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969795.1"
                     /translation="MNTRIIVSAAFVALALAGCGSINNVTVSDQKLQERAAFALGVSP
                     NAVKISNRNNEGIRINFTATVGKRVSQCYVTSVISTIGVTTSDAICLGGGTHKGKSQC
                     NALLKAAGRC"
     gene            complement(7899..8759)
                     /locus_tag="ACFOCN_000601"
     CDS             complement(7899..8759)
                     /locus_tag="ACFOCN_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HFC6969796.1"
                     /translation="MAKVKGGLGRGLDSLLANGADNSSGDRLTTVAVKDIRPGRYQAR
                     VQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGERRWRAAQIAGLTEIPAVI
                     KTISDETALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISN
                     SLRLLSLPEPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQ
                     VALQNKRPEPKKTAAADIGRLNDLLTEKLGVNAEIKTANHKKGRIILHFDTPETFDHI
                     LKQLGIDYRP"
     gene            8918..9487
                     /locus_tag="ACFOCN_000602"
     CDS             8918..9487
                     /locus_tag="ACFOCN_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HFC6969797.1"
                     /translation="MVRRLIIGISGASGFQYGVKALELLRAQDIETHLVVSKGAEMAR
                     ASETAYARDEVYALADFVHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVAHGFGDN
                     LLTRAADVVLKERRRLVLMVRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTAD
                     DIVAHSVAHALSLFGIDTPDSAEWQGMAD"
     gene            complement(9549..10412)
                     /locus_tag="ACFOCN_000603"
     CDS             complement(9549..10412)
                     /locus_tag="ACFOCN_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6969798.1"
                     /translation="MKTFFKTLSAAALALILAACGGQKDSAPAASASAAADNGAEKKE
                     IVFGTTVGDFGDMVKEQIQAELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKP
                     YLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM
                     LDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAI
                     SSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYK
                     SPAAWNEGAAK"
     gene            complement(10571..11257)
                     /locus_tag="ACFOCN_000604"
     CDS             complement(10571..11257)
                     /locus_tag="ACFOCN_000604"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HFC6969799.1"
                     /translation="MADLTFQQAVSNIIGMKGEIVRALGETFVMVGLSTTFAVVFGTL
                     LGVLLFVTSSRQLHYNKPVNFLLDNLVNLMRAFPFVILMIAMIPATRAIVGSTIGPVA
                     ASLVLSVSGLFYFARLVEQNLREVPKGVIEAAAAMGAPPVAIVRKVLLNEARTGMVSS
                     ITVLAIGLLSYSAAAGMIGGGGLGDLAIRYGYYRYQTEVIVFIVALLVLLVILIQSTG
                     NALARKLDKR"
     gene            complement(11259..11996)
                     /locus_tag="ACFOCN_000605"
     CDS             complement(11259..11996)
                     /locus_tag="ACFOCN_000605"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HFC6969800.1"
                     /translation="MIILDKVSKHYQTRDKTRFAAVEPTSLEIRDGEIFGLMGYSGAG
                     KSTLLRLINLLERPDSGKVNVCGQELTALDAAALRQARQNIGMVFQQFNLLNNRTVAG
                     NVAFPLEIAGWPSEKIKARVAECLEIVGLTERAGHYPAQLSGGQKQRVGIARALAPKP
                     QVILADEPTSALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKG
                     KVVEIVEVRGNQIHARSDIGRELIRED"
     gene            12373..14220
                     /gene="ltgA"
                     /locus_tag="ACFOCN_000606"
     CDS             12373..14220
                     /gene="ltgA"
                     /locus_tag="ACFOCN_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase LtgA"
                     /protein_id="HFC6969801.1"
                     /translation="MYLPSMKHSLPLLAALVLAACSSTHAPSSKTLADNIETAGLSAS
                     VPTRPAEPERKTLADYGGYPSALDAVKQKNDAAVAAYLENAGDSAMAENVRNEWLKSL
                     GARRQWTLFAQEYAKLEPAGRAQEVECYADSSRNDYTRAAELVKNTGKLPSGCTKLLE
                     QAAASGLLDGNDAWRRVRGLLAGRQTTDARNLAAALGSPFDGGTQGSREYALLNVIGK
                     EARKSPNAAALLSEMESGLSLEQRSFAWGVLGHYQSQSLNVPAALDYYGKVADRRQLT
                     DDQIEWYARAALRARRWDELASVISHMPEKLQKSPTWLYWLARSRAATGNTQEAEKLY
                     KQAAATGRNFYAVLAGEELGRKIDTRNNVPDAGKNSVLRMAEDGAIKRALVLFRNSRT
                     AGDAKMRRQAQAEWRFATRGFDEDKLLTAAQTAFDHGFYDMAVNSAERTDRKLNYTLR
                     YISPFKDTVIRHAQNVNVDPAWVYGLIRQESRFVMGAQSRVGAQGLMQVMPATAHEIA
                     GKIGMDAAQLYTADGNIRMGTWYMADTKRRLQNNEVLATAGYNAGPGRARRWQADTPL
                     EGAVYAETIPFSETRDYVKKVMTNAAYYAALFGAPHIPLKQRMGIVPAR"
     gene            14509..14721
                     /gene="rpsU"
                     /locus_tag="ACFOCN_000607"
     CDS             14509..14721
                     /gene="rpsU"
                     /locus_tag="ACFOCN_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HFC6969802.1"
                     /translation="MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTE
                     RKRKKAAAVKRLQKRLRSQQLPPKMY"
     gene            14853..15299
                     /locus_tag="ACFOCN_000608"
     CDS             14853..15299
                     /locus_tag="ACFOCN_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HFC6969803.1"
                     /translation="MSLKIRLTEDMKTAMRAKDQVSLGTIRLINAAVKQFEVDERTEA
                     DDAKITAILTKMVKQRKDSAKIYTEAGRQDLADKENAEIEVLHRYLPQMLSAGEIRTA
                     VDAAVAETGAAGMADMGKVMGVLKTRLAGKADMGEVNKILKAVLTA"
     gene            15320..15469
                     /locus_tag="ACFOCN_000609"
     CDS             15320..15469
                     /locus_tag="ACFOCN_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969804.1"
                     /translation="MPSEARIAGSDSIFNVPISNRQGQHGFDTPKRVLPINGFRLRPI
                     GQNAV"
     gene            complement(15498..15890)
                     /locus_tag="ACFOCN_000610"
     CDS             complement(15498..15890)
                     /locus_tag="ACFOCN_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HFC6969805.1"
                     /translation="MPTSTKPYVLRALCEWCSDNSLTPHILVWVNEHTRVPMQYVRDN
                     EIMLNIGATATQNLQIDNDWISFSARFSGQAHDIWIPVGHVLSLFARETSEGMGFELE
                     EYRPDTPPENTPAETAPRPAKKGLKLVK"
     gene            complement(15962..16567)
                     /locus_tag="ACFOCN_000611"
     CDS             complement(15962..16567)
                     /locus_tag="ACFOCN_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HFC6969806.1"
                     /translation="MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDVDIYNKPEDLAVM
                     NPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDPVMRGRGRLVLYRMEKELF
                     NYVQVLENPAATNKEQAKAREAIGNGLTMLAPSFSKSKYILGEDFSMIDVALAPLLWR
                     LDHYDVKLGKSAAPLLKYAERIFQREAFIEALTPAEKAMRK"
BASE COUNT         3992 a         4390 c         4350 g         3872 t
ORIGIN      
        1 ctatatgttt cggttaggcg gcaggctgcc ctattgaata ccttaaagca ggctatgcct
       61 gccaacgcca tatccaaaca cagtctttaa tttaaatccg gaaaataaaa agcacgacca
      121 aacggtcgtg cttttccaaa ccaaacaagt ttatttcttg tgcgaacgga tatagtccaa
      181 agttttgagc tgtgcaatcg cagcagccaa tgctttatgt gcttccgcca aagccttatc
      241 gtctttagct tgggaaatgc ccgcttctgc ggcttttttc gcctcttccg cacgtgcctg
      301 atccatctcc gcactgcgga cggcaacatc cgccaagaca gttactttat caggctgtac
      361 ttccaaaaca ccgccggaaa cagcaaccaa aacctcttta tcctcgcccg gaacggtcaa
      421 acgcaaagcc cccggccgca ccaaactcat aatcggctcg tgtcgcgggt aaataccaag
      481 ctcaccttga acggtcggaa ccactacaaa gctggcttcg cccgaataga tgttttgctc
      541 gctactgacc acctcaactt gcatgatgct catgccgacc tcctcagttt aaggttttcg
      601 ctttctcaac cgcttcttcg atgctgccga ccatgtagaa tgcctgttcg ggcagatggt
      661 cgtattcgcc gttcaagatg gctttgaagc cggcaatggt atcgcgcagg gcgacatatt
      721 tgcccggaga acctgtaaac acttcggcaa cgtggaacgg ttgggacagg aagcgttgga
      781 ttttacgcgc acgcattacg gtcagtttgt cttcgtcaga caattcgtcc atacccaaga
      841 tggcgatgat gtcgcgcaat tctttgtatt tctgcagggt ggactgtacg ccgcgcgcca
      901 cgtcgtagtg ctcttgaccc aagaccatcg gatccagttg gcgcgaagtg gaatcaagcg
      961 gatcgactgc cgggtaaata cccaaagagg caatatcgcg gctcaatacg acggttgcgt
     1021 ccaagtgggc gaacgttgtt gccggagacg ggtcggtcaa gtcgtccgca ggtacatata
     1081 cggcttggat agaagtaata gaaccggttt gggtagaggt aatacgctcc tgcaaacgac
     1141 ccatttcttc tgccaatgtc ggttggtagc ccactgcaga cggcatacgg cccaacaatg
     1201 cggatacttc ggtaccggcc agagtgtaac ggtagatgtt gtccacgaag aacaatacgt
     1261 cgcggccttt gccgttttcg tctttttcgt cacggaagta ttccgccatg gtcaaaccgg
     1321 tcaatgcgac gcgcaaacgg ttgcccggag gttcgttcat ctgaccgtaa accattgcca
     1381 ctttatccaa tacgttggaa tctttcatct cgtggtagaa gtcgttacct tcgcgggtac
     1441 gctcacccac gcctgcgaac acggacaagc cgctgtgcgc tttggcgatg ttgttgatca
     1501 attccatcat gttcacggtt ttacccacac cggcaccgcc gaacagacct actttaccgc
     1561 ctttggcaaa cggacacagc aagtcaatca ctttaatgcc cgtttcgagc aattcggttg
     1621 tggaagacag ttcgtcaaac ttaggagcgg cttggtggat ggcacgactc ttgtcggtat
     1681 cgatcggacc tgcctcgtca acaggcgttc ccaatacatc gacaatgcgt cccaacgtac
     1741 ctttacctac cggcacagta atgggcgcac cggtattgct cacagtcatg ccgcgtttca
     1801 aaccgtccga gctgcccatc gcaatggtac ggactacgcc gtcgcccaaa agctgttgga
     1861 cttccaaagt cagaccgttt tcgtctaatt tcaaagcgtc gtaaacgcgc ggaatcatgt
     1921 cgcgtggaaa ttccacgtca acaaccgcac cgataatttg tacgattttg ccttggctca
     1981 ttatcgtatc ctaatttccg tacaggattc agacggcatc agacagccgc cgcacctgct
     2041 acaatttctg acaattccgt ggtaatcgca gcttgacgcg atttgttata taccaaacgc
     2101 aactctttga tggcattgcc tgcattgtct gttgcagctt tcatggcaac catgcgggct
     2161 gcctgttcgg atgccatatt gtcgctcaac gcctgataaa ccacagactc taaatagcgg
     2221 cgaaccagat attccaacac tgcaagtgca gtcggttcgt agcggtattc ccagctgaac
     2281 ggtgatttgg gagctgaatc gccaatcacg ttctcaccga taggcagcaa tacttccatt
     2341 ctcggttcct gacgcatggt attgacaaaa cccgaataca ccagatggat tctgtcaatt
     2401 tcatgtttct cataccgttg gaagagttct gtcaaaggtc cgagcagcat ttccattttt
     2461 ggggtatcgc ccaaatttac ggcactggca accacattca gaccaatgct ctgacacgcc
     2521 atcagacctt tactgccaag gcatacgatt tcctcttcaa taccttgatt ccgatactct
     2581 tgaacttgtg ccaaaaactt tttcagcacg ttggcgttca aaccgccaca caaaccctta
     2641 tcagacgtaa tcaaaataaa accgacacgt ctgatttccc gatgagattc cagcaacgga
     2701 ataccatgat cggtattggt ttgcgcaaga tggctcatca ccatacgcac tttttcggca
     2761 tacggacgcg ccaaacgcat ccgttcctga gtcttccgca ttttagaggt tgacaccatc
     2821 tgcatcgctt tagtgatctt ttgggtattc tgaacactgc ggattttggt gagaatctct
     2881 tttcctactg ccatttcaga ctcctttcac ttcaagcctt atgcctgata ggcgtaagaa
     2941 gatttgaagg atttcatggc tgcttcaagc gttttctcgc tctcgtcgga cattgcacct
     3001 gaagcattga cggcttccaa aacttccgga tgttgggtac ggacaaagct caaaaattca
     3061 gattcaaaag ccagagcttt ggcaaccgga acatcagaat acgaaccgtt gttgattgcc
     3121 caaagggtca aagccatttc agccgtattc aacgtactga actgtttctg tttcatcagt
     3181 tcggttacga cttcgccatg ctccaattgt ttgcgcgtag cttcatccaa atcggatgca
     3241 aattgcgaga acgccgccaa ttcacgatat tgcgccaacg ccaaacggat accgccaccc
     3301 agctttttaa tcactttggt ttgtgcagca ccgcctacgc gggatacgga aataccggca
     3361 ttgattgcag gacggatacc ggcgttgaag aggtcggttt ccaagaaaat ctgaccgtcg
     3421 gtaatcgaaa tgacgttagt cggaacgaaa gcagatacgt cgcccgcttg ggtttcgata
     3481 atcggcaaag cagtcagaga accggttttg ccttttactt cgccgttggt caatttctcc
     3541 acttcgtgtt cattgacacg tgctgcacgt tccaacagac gggagtgcag gtagaacaca
     3601 tcgccgggat aggcttcgcg gccgggcgga cggcgcaaaa gcagggaaat ttgacggtaa
     3661 gccacagcct gtttggacaa atcgtcataa acaatcaagg catcttcgcc gcggtcgcgg
     3721 aagaattcac ccatcgtaca accggagtaa ggtgcgatat attgcaatgc cgccgcttca
     3781 gatgcagttg cagcaaccac aatcgtgtgt tccatcgcgc catgctcttc caatttgcgg
     3841 accacgttgg caatagaaga tgctttttga ccgatagcga cataaataca gataacgccc
     3901 gtaccttttt ggttgacgat ggcatccaat gctacggccg ttttaccggt ttgacggtcg
     3961 ccaataatca actcacgctg accgcgaccg acaggaacca tagagtcaat cgccttcaga
     4021 ccggtttgca tcggctggtc aaccgatttg cgcgcaatca cgcccggtgc gattttttcg
     4081 ataggggcgg tcaaagttgt attaatcggg cctttgccgt caatcggacg acccaatgca
     4141 tcaacgacgc gtccgaccag ttcgcgtccg accggcactt ccaagatacg accggtacaa
     4201 gtaaccgtgt cgccttcttt aatatgttcg tactcgccca acactacggc gccgacggag
     4261 tcgcgctcca ggttcatcgc caagccgaaa gtgttacccg ggaattcgag catctcacct
     4321 tgcattgcat ctgacaaacc atggatgcga acgataccgt cagttaccga aatcaccgta
     4381 ccacgggtac gcacttcggc atttacagac agattttcga tcttggcttt aatcaaatcg
     4441 ctaatttcag caggattaag ctgcatgaaa actctcctaa ttcgtcatag tcgtgtacaa
     4501 ggcactcaat ttgccttgta cagacaaatc caaaacctga tcacccactt caacttttat
     4561 gccgccaatc agctccggtt cgatttcgac agagattttc agctcgctgt cgaaacgctt
     4621 attcagcatt tgcgccaact cgccgacctg tttgtcggtc aacggatagg cactgtaaat
     4681 gacggcagat ttgatatggt tgaatgataa ggtcaagtct tgatattgag catatacttc
     4741 cggcaatatc gacaaacgtt tctgcccggc caagacgata acaaagtttt tcaactcctt
     4801 gtctttcaaa ccgaccaaat cgatgaggat atctgctttt tctgaagcat tcgtttcagg
     4861 acggtcaatc aatgaagcca ccttcccttc ctgaacaacc gccgcaagtt tttccagtcc
     4921 gcccaaccaa gactcaattt ggcttttttc ctgagccaga ccgaacaatg cctttgcata
     4981 aggtctggca atcgttgcga actctgccat aagattacag ctcctgtttc agggtatcga
     5041 gcagttttgc gtgtttggaa gcatcgactt cgctgcgcaa aatagattcg gcacctttga
     5101 cagccaacac ggcaacctgc tcgcgcaggg attcgcgtgc gcggaacaat tcctgctcca
     5161 catcggcctt tgcctgagct gcaatgcgcg ccgcctcgga agaagcctgt tctttggctt
     5221 cttcgacaat tttggcggca cgtttttcgg cgttggcaac catttcggaa acctgattac
     5281 gcccttctgc caagagttct gcaacctttt tttcagcctg ctcgaaatcg cttttaccac
     5341 gctcggcggc agccaagcct tcggcgactt ttgcggcacg ctcatccaaa gcttttgcaa
     5401 tcggcggcca cacgaatttc atggtaaacc ataccaaacc gaaaaagacg atgatttgag
     5461 cgaataatgt tgcattgata ttcacgttac ttaaccttcg tactggggtt aatcaaacag
     5521 gctgcgcctg tacggaacgg acgaatccgt cctgattatg cacctgcaaa cgggttaacg
     5581 aaggcgaaca gcagtgcaat ggcgacacca atcaagaatg cggcatcaat caaaccggca
     5641 atcaggaaca gtttggtttg cagcggaccg atcagttcgg gctgacgggc agaagactcc
     5701 aaatatttag aaccgaccat tgcgataccg atagaggcac ccaatgcacc caatgcaacg
     5761 atcaaaccac atgcgatagc aatcaaaccc attttaaact ccttaaagaa acaaaggtta
     5821 aactacaaaa acaaactact taggaaaatc agtgcgcatc atgtgcctgt ccgatataga
     5881 cgaacgccaa cgccatgaaa ataaacgcct gcagggtaat caccaaaata tggaaaatcg
     5941 cccatgccaa accggcaata atgtggaata caaacagaat cggatccatg acttcgacgc
     6001 tgccggaagc cgcccaagca ccgccaagca aggctatcaa caagaatacc aattcgcccg
     6061 catacatatt gccgaacaac cgcataccgt gggatacggt tttagaaaga aactcgacca
     6121 aattcaacag aaagttcgca ggtgcgagtt ttgcaccgaa cggcgcgctg aacaactcgt
     6181 gaaaccagcc acccaatcct ttgattttga tgttgtaata gatacaaatc agcaacacgc
     6241 cgacagcgag tgccaaagtg gtgttcaaat cggcagtcgg tacgacacgc agcagggcgt
     6301 gatggttgcc ggtaatgccc tgccatacca tcggcagcaa atcgaccggc agcatatcca
     6361 tcgcgttcat cagaaaaatc cagacaaaca gcgtcagacc caacggcgcg acggcttttc
     6421 tagacttttc gttgtgaatg atgctcttac acatatcgtc cacaaactca aacaagattt
     6481 ccactgcggc ctggaaacgt ccgggaacgc ctgccgtcgc tttttttgca ccgcgccaca
     6541 acagaaagct gccgattacg cccaacagga cggcaaaaaa gacggcatca aggttaataa
     6601 acgaaaaatc agcaatgttt ttcagtccct gaccctgagt aacatccgac aaactggtca
     6661 agctctgcaa gtggtgcttg atgtagtcgg cagcggtaat ggtttcacct gccataatct
     6721 ttcactctca acaatactaa aaaaaccaaa tggctgacac cgagcagccc catcagaaac
     6781 ggggcgaaca ccagcgattg atgccatatt gcaaatacgg caagcatgga caacagcgac
     6841 agcactactt ttaaaatctc tccgaagacg aacatcctgc tttgcaggaa ggggtttccc
     6901 ctgaaaagtt ttaaaagtaa aactgcaaca aacgtgggaa gcaggtagga caaaccgcca
     6961 ccgaccgccg aaaggaatcc ggcaaaaccc catacagcaa aggcaactgc ggcgcatatg
     7021 gacaatacgg cggattgtag gatgataatc tgcttcataa agggaatgtt tccgcctcgg
     7081 atttggggcg cggctaatat aatttagaag ccttattacg tcaagcgaca gttaatcttt
     7141 gtgaaacaac gtatcccaat ccgccgcgct cgccgcctga ataacggcga caggtgtcat
     7201 tctaacacac attacatata attacaggat attaaggagt ttgtccgcaa tttctttaca
     7261 tttttaatgt tcttacgtga tttgtttgct ttacgtggaa ataataaaaa atcaacgcga
     7321 aattgtagca gtttatcggt cggattgtcg gcagtttggg gaatttgctc aataaataaa
     7381 aggtcgtctg aaaatatttt cagacgacct tttccgaata aaggattagc aacggcctgc
     7441 cgctttaagc aaagcattgc attgactttt gcctttgtgc gttccgcctc ccaaacaaat
     7501 tgcatcggaa gtggtaacgc cgattgtgct gattacactg gtaacatagc attggctcac
     7561 gcgcttaccc acagttgcgg taaagttgat gcgtatgcct tcattgttgc ggttgctgat
     7621 ttttacggca tttgggctga cgcccaaggc aaacgcggca cgttcctgaa gtttctggtc
     7681 ggaaacggtt acattattga ttgagccgca acctgctaat gccaacgcaa cgaacgcagc
     7741 cgaaacgatg atgcgtgtgt tcataatttc ctcgaaaatt aaaaatgaaa acaggaaaac
     7801 gattcttacg tgaagcagaa aaatgtcaat agaattatat ttcccactta aaatctggaa
     7861 agctgttctc tatatttcag acggtatatc ccgcaaaatt aaggtcggta atctatgccc
     7921 aactgcttca agatatggtc gaaggtttcg ggcgtgtcga aatgcaggat gattctgcct
     7981 tttttatgat tggcggtttt gatttcggcg ttgacaccca gtttttcagt cagcaaatca
     8041 ttcaggcggc cgatgtcggc ggcggcagtc tttttgggct cgggacgttt gttttgaagg
     8101 gcgacctggc tgcggcgttc gacttcgcgc accgaccagc cgtttttgac ggccttttgc
     8161 gccaattcga gctgttcgac gacgggcagg gtcagcaatg cgcgggcgtg ccccatttcg
     8221 aggcggcgtt ggtaaagcat ttcctgcacg ggttcgggca ggcttaaaag gcgcaggctg
     8281 ttggaaatcg cgcttcggct tttaccgacg gcttgggcga tggtttcgtg ggtcagcccg
     8341 aactcgtcgg caaggcgttt caagccttgt gcttcttcga tggggttgag gttttcgcgc
     8401 tggaggtttt cgatcaaacc cattgccaac gcggtttcgt cgctgatggt tttgataacg
     8461 gcggggattt cggtcaggcc ggcaatctgt gcggcacgcc aacgccgctc ccccgcaatc
     8521 agttcgtatc gggacagtcc gtgttcgcgc acgatgacgg gctgtatcac gccttgcgcc
     8581 ttaatcgaat ccgccagctc ctgcaaggct tcgtcatcga tttgaacacg cgcctgatag
     8641 cggccgggcc ggatatcttt aaccgcaacc gtggtcaatc ggtcgccgct gctgttgtct
     8701 gcgccgttgg cgagcagcga atccaaaccg cgccccaatc cgccttttac ttttgccata
     8761 ccgccctccc gtgcctattt cagataggat gttaaatcgg atattttatc ggatattggg
     8821 tgttgccgac aatttgtatc cgtgtttatc ggatttctgt tttttcacta taatagccga
     8881 tttgccgttg caggcggttt tatgggaaag gcggatgatg gtacggcgtt tgataatcgg
     8941 catcagtggg gcgagcggtt tccaatacgg cgtgaaggct ttggaacttt tacgcgcgca
     9001 agatatcgaa acgcaccttg tggtatcgaa aggtgcggag atggcgcgcg cttcggaaac
     9061 ggcttatgcg agagatgagg tatatgcctt ggcggacttc gtgcatccga tcggcaatat
     9121 cggggcgtgc attgccagcg gtacgtttaa aacggacggg atgctggtcg ccccctgttc
     9181 gatgcggacg cttgcctcgg tcgcgcacgg cttcggcgac aacctcttga cgcgtgcggc
     9241 ggatgtggtt ttgaaggaaa ggcggcggct ggtgctgatg gtgcgcgaaa cgccgctgaa
     9301 ccttgcccat ttggacaata tgaagcgggt aacggaaatg ggcggcgtgg tgtttccccc
     9361 tgttcctgcg atgtaccgca aaccgcagac ggcggacgac atagtggcgc acagtgttgc
     9421 acacgctttg tcgctgttcg gaatcgatac gccggattcg gcggaatggc agggaatggc
     9481 ggattaaagg acaaaaatgc cgtctgaaca cggatacggt tcagacggca tcattttata
     9541 cgactgcctt atttggctgc gccttcattc catgcggcag gggatttgta gccctcgaag
     9601 cgtttgtgcg cgtaggcttt gaacgcgtcg gagttatagg cctcggttac gtctttaagc
     9661 cattggctgt ctttgtcggc ggttttgacg gcagaccagt tgacataggc aaagctcggt
     9721 tcttggaaca gggcttcggt cagcttcatg ccgctgctta tggcgtagtt gccgttgacg
     9781 acggcaaaat ccacgtcggc gcggctacgc ggcagttgcg cggcttcaag ctcgacgatt
     9841 ttgatgtttt tcaggttctc ggcgatgtcc gctttggatg cggtcagcgg attgatgccg
     9901 tctttgagtt tgatccaacc cagttcgtcg agcatcacca agacgcgggc gaagttggac
     9961 gggtcgttgg gcgcggatac ggtgctgccg tctttgactt cttccagcga tttcagcttg
    10021 cccgggtaca gtcccaaagg cgcggtcggc acttggaaga cttcggtgat gtccagattg
    10081 tgttcttttt tgaagtcgtc aagatagggt ttgtgttgga agacgttgat gtccaactcg
    10141 ccctcagcca atgccagatt cgggcgtaca tagtcggtaa actcgaccag tttgacggtg
    10201 tagccttttt tctccagctc ggcttggatt tgttctttga ccatatcgcc gaagtcgccg
    10261 acggtcgtgc cgaagacgat ttcttttttc tccgcgccgt tgtcggcggc ggcagaagcg
    10321 gatgcggcgg gcgcgctgtc tttttgaccg ccgcaggcgg cgaggatgag cgcgagtgcg
    10381 gcggcggaaa gggttttgaa gaaggttttc atattttctc ctgatgttgt ggcagtttca
    10441 aacaaaaatg acgggcaggg agtcctgccg tccggattcg gcgttcagac ggcatttgcc
    10501 gcgaacaggg ggattttata gcatttttcg gatagcggtg ggggttttgg cgttcagacg
    10561 gcattcgggt ttaacgtttg tcgagtttcc gcgccaacgc gttgccggtg ctttgaatca
    10621 ggatgaccag cagcacgagg agggcgacga tgaagacgat gacttcggtt tggtagcggt
    10681 agtagccgta gcggatggcg aggtcgccca agccgccgcc gcctatcatc cctgccgccg
    10741 cgctgtatga caaaagcccg atggcaagca cggtaatgct ggaaaccatg cccgtgcgcg
    10801 cttcgtttaa gaggactttg cggacgatgg caaccggcgg cgcacccatc gcggcggcgg
    10861 cttcaatcac gcctttgggg acttcgcgca ggttttgttc caccagtcgg gcgaagtaaa
    10921 acagaccgga cacgctcaat accagcgagg cggcaactgg accgatggtg ctgccgacaa
    10981 tggcgcgtgt ggcgggtatc atcgcaatca tcaaaatgac gaaggggaag gcgcgcatga
    11041 ggttgacgag gttgtcgagc aggaaattta ccggcttgtt gtaatgcagt tggcggctgg
    11101 aggttacgaa gagcaacacg cccagcaacg tgccgaaaac gacggcgaat gtggtggaca
    11161 aaccgaccat tacgaaggtt tcgcccaatg cgcggacgat ttcgcctttc ataccgatga
    11221 tgttggaaac ggcttgttgg aaggtcaggt ctgccatttc agtcctctct gatgagttcg
    11281 cgcccgatgt cggatcgggc gtggatttgg ttgccgcgta cttcgacgat ttcgacgact
    11341 ttgcctttat ccaacagggc ggcgcggtcg cacagtcgtc tgataacgct catttcgtgg
    11401 gttacgatga cgatggttac gttgaatcgt ttgttgatgt cttccaaaca ttccaagacg
    11461 ctgcgcgtgg tggcggggtc gagggcggaa gtgggttcgt cggcgaggat gacttggggt
    11521 ttgggcgcga gtgcgcgggc gatgccgaca cgctgtttct gcccgcctga aagctgggcg
    11581 ggatagtggc cggcgcgttc ggtcagtccg acgatttcga gacattcggc aacgcgcgct
    11641 ttgatttttt cagacggcca tccggcgatt tccaatggga aggcgacgtt gccggcgacg
    11701 gtgcggttgt tcaacaggtt gaactgctga aacaccatgc cgatattctg ccgagcctga
    11761 cgcaatgcgg cggcatcgag cgcggtcagc tcttgtccgc agacgttgac cttgccgctg
    11821 tcgggacgtt ccaacaggtt aatcaggcgc aacagggtgg atttgcctgc acccgaataa
    11881 cccatcagcc cgaagatttc accgtcgcgg atttcgaggc tggtcggctc gacggcggca
    11941 aaacgggtct tgtcgcgcgt ttggtaatgc ttggaaacct tgtccaaaat aatcattgtc
    12001 tttcccatac aacaaagccc gatgtcggac acaacgggcg cggaagataa agctgaaatt
    12061 gtcggaacgc tttagctgtt atgcccgcaa gctgtgtcaa atcggcaggt taattttcgt
    12121 aggatattat cgggaaagcg tttttttgtc aataaggcag gaagcgggca accatttcgg
    12181 acaatgccgt ctgaaacagg caaaggcagc agttcgcacc aaaacggcaa atgattgaaa
    12241 aatataaatt atgtcagaaa cattccaaag ccggtgcagt ttcggcatat aattcatgca
    12301 aacgcctgtt cagacggcat tttgtctttt ccaaccctga ccgttcaggg ttccgattct
    12361 taaggaaatc cgatgtacct accctctatg aagcattccc tgccgctgct ggcggccctg
    12421 gtgcttgccg cgtgttcttc gacacacgcg cccagcagca agaccctggc agacaatata
    12481 gaaactgccg gtctttcggc aagcgttccc acccgccctg ccgaacccga aagaaaaacg
    12541 ctggcagatt acggcggcta cccgtccgca ctggatgcag tgaaacagaa aaacgatgcc
    12601 gccgtcgccg cctatttgga aaacgccggc gacagtgcga tggcggaaaa tgtccgcaac
    12661 gagtggctga agtctttggg cgcacgcaga cagtggacgc tgtttgcaca ggaatacgcc
    12721 aaactcgaac cggcagggcg cgcccaagaa gtcgaatgct acgccgattc gagccgcaac
    12781 gactatacgc gtgccgctga actggttaaa aatacgggca aactgccttc gggctgcacc
    12841 aaactgttgg aacaggcagc cgcatccggc ttgttggacg gcaacgacgc ctggaggcgc
    12901 gtgcgcggac tgctggccgg ccgccaaacc acagacgcac gcaaccttgc cgccgcattg
    12961 ggcagcccgt ttgacggcgg tacacaaggt tcgcgcgaat atgccctgtt gaacgtcatc
    13021 ggcaaagagg cgcgtaaatc gccgaatgcc gccgccctgc tgtccgaaat ggaaagcggt
    13081 ttaagcctcg aacaacgcag tttcgcgtgg ggcgtattgg ggcattatca gtcgcaaagc
    13141 ctcaatgtgc ctgccgcctt ggactattac ggcaaggttg ccgaccgccg ccaactgacc
    13201 gacgaccaaa tcgagtggta cgcccgcgcc gccttgcgcg cccgacgttg ggacgagctg
    13261 gcctccgtta tctcgcatat gcccgaaaaa ctgcaaaaaa gcccgacctg gctctactgg
    13321 ctggcacgca gtcgcgccgc aacgggcaac acgcaagagg cggaaaaact ttacaaacag
    13381 gcagcagcga cgggcaggaa tttttatgcg gtgctggcgg gggaagagtt ggggcgcaaa
    13441 atcgatacgc gcaacaatgt gcccgatgcc ggcaaaaaca gcgtcctccg tatggcggaa
    13501 gacggcgcga ttaagcgcgc gctggtgctg ttccgaaaca gccgaaccgc cggcgatgcg
    13561 aaaatgcgcc gtcaggctca ggcggaatgg cgttttgcca cacgcggctt tgacgaagac
    13621 aagctgctga ccgccgcgca aaccgcgttc gaccacggtt tttacgatat ggcggtcaac
    13681 agcgcggaac gtaccgaccg caaactcaac tacacattgc gctatatttc gccgtttaaa
    13741 gacacggtaa tccgccacgc gcaaaatgtt aatgtcgatc cggcgtgggt ttacgggctg
    13801 attcgtcagg aaagccgctt cgttatgggc gcgcaatccc gcgtaggcgc gcaggggctg
    13861 atgcaggtta tgcctgccac cgcgcacgaa atcgccggca aaatcggtat ggatgccgca
    13921 caactttaca ccgccgacgg caatatccgt atggggacgt ggtatatggc ggacaccaaa
    13981 cgccgcctgc aaaacaacga agtcctcgcc accgcaggct ataacgccgg tcccggcagg
    14041 gcgcgccgat ggcaggcgga cacgcccctc gaaggcgcgg tatatgccga aaccatcccg
    14101 ttttccgaaa cgcgcgacta tgtcaaaaaa gtgatgacca acgccgccta ctacgccgcc
    14161 ctcttcggcg cgccgcacat cccgctcaaa cagcgtatgg gcattgttcc tgcacgctga
    14221 cgtaccgatg ccgtctgaaa cccgcccggt ctttcagacg gcatttttat cccgaacggc
    14281 attgacggcg aaccataaat ataagacaat ccgaaaattg tttttcctgc tttttcaagc
    14341 agcttgacac ggcacaagcc gacccgttag gaggtgatgt ttccgtcacg gcgcgtatcc
    14401 cgccgccgca aggcacagcg atacggtaaa ccttcaacac cgtctgccct accctttcca
    14461 ccgatatgat gggcagatga aacaaccgaa tttattaaag gaaataaaat gcctgcaatc
    14521 cgcgtaaaag agaatgaacc ctttgaagtc gctatgcgcc gtttcaaacg cgccgtagaa
    14581 aaaaccggcc tgctgaccga gctgcgcgcc cgcgaagcct acgaaaaacc gactaccgaa
    14641 cgcaaacgca aaaaagcggc agccgtaaaa cgcctgcaaa aacgcctgcg cagccaacaa
    14701 ctgccgccca aaatgtacta aacgttcaag tacagattac aggtcagccc tgtgatatga
    14761 ggacacaccg caagacctgc tctgcggtgt gttttgcttt tcagacggca tcgaaacccg
    14821 ccgtttccat ccgacatccc agcgaggaca ttatgagcct gaaaatccgc cttaccgaag
    14881 acatgaaaac cgcgatgcgc gccaaagacc aagtttccct cggcaccatc cgcctcatca
    14941 acgccgccgt caaacagttt gaagtggacg aacgcaccga agccgacgat gccaaaatca
    15001 ccgccatcct gaccaaaatg gtcaaacagc gaaaagacag cgcgaaaatc tacactgaag
    15061 ccggccgtca ggatttggca gacaaagaaa acgccgaaat cgaggtactg caccgctacc
    15121 ttccccaaat gctctccgcc ggggaaatcc gtactgcggt cgatgccgcc gttgccgaaa
    15181 ccggcgcggc aggtatggcg gatatgggca aagtgatggg cgtattgaaa acccgacttg
    15241 ccggcaaagc cgatatgggc gaagtcaaca aaatcctgaa agccgtgctg accgcctgat
    15301 tgcccgaata tcggacaaaa tgccgtctga agcccgtatc gcaggttcag acagcatttt
    15361 caatgtccca atatcgaatc ggcaggggca acacggtttc gatacaccga aacgggtttt
    15421 gccgataaac ggattccgtt tgcgccccat cggacaaaat gccgtctgaa acacgattcc
    15481 gttcagacgg catagattta tttgaccaat ttcaagcctt ttttggcggg tcggggcgcg
    15541 gtttcggcag gggtgttttc aggcggcgta tcggggcggt actcctccaa ttcaaacccc
    15601 ataccttcgc tggtctcccg tgcgaaaagg ctgaggacgt gtccgacagg tatccatata
    15661 tcgtgcgcct gtccgctgaa acgggcggaa aagctgatcc aatcgttgtc gatttgaagg
    15721 ttttgcgtgg cggttgcgcc gatattgagc ataatttcgt tgtcgcggac gtactgcatg
    15781 gggacgcgcg tgtgttcgtt gacccaaaca aggatgtgcg gtgtgaggct gttgtcgctg
    15841 caccattcgc agagagcgcg gaggacgtag ggtttggtgg aagtgggcat aatgggttcc
    15901 gtgttgtacg ccaaaatagg aaaatgcctg caaaacggtg ggttttgcaa gcatttcgga
    15961 cttatttgcg catggctttt tcggcgggtg tcagtgcttc gataaaggct tcgcgctgga
    16021 agatgcgctc ggcgtatttg agcagcggcg cggcactttt gcccagtttg acatcgtagt
    16081 ggtcgagccg ccacagcagc ggagcaaggg cgacatcaat catagaaaaa tcttcgccga
    16141 ggatgtattt gcttttgctg aacgaagggg cgagcatcgt caggccgttg ccgatggctt
    16201 cgcgcgcttt tgcctgttcc ttgttggtgg cggcggggtt ttccaaaact tggacgtagt
    16261 tgaacaattc tttttccata cggtacagca ccagccggcc cctgccgcgc ataacgggat
    16321 caccgggcat aagctgcgga tgggggaagc gttcgtcgat gtattcgttg atgatgttgg
    16381 actcgtgcag caccaaatcg cgctcgacca gtacggggac ctggttgtac gggttcatga
    16441 cggcgaggtc ttcgggtttg ttgtaaatat cgacgtcttt gatttcaaaa tccatacctt
    16501 tttcgtacaa aacgaagcgg cagcggtggc tgaaggggca ggtaatgccg gaatagaggg
    16561 tcatcataat aattgtcgct cctgtgtgat gcctacaaaa cggc
//
LOCUS       DAXIFD010000025        16511 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.025, whole genome shotgun sequence.
ACCESSION   DAXIFD010000025 DAXIFD010000000
VERSION     DAXIFD010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16511
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.025"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(143..233)
                     /locus_tag="ACFOCN_000612"
     tRNA            complement(143..233)
                     /locus_tag="ACFOCN_000612"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(197..199),aa:Ser,seq:gga)
     gene            complement(269..355)
                     /locus_tag="ACFOCN_000613"
     tRNA            complement(269..355)
                     /locus_tag="ACFOCN_000613"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(319..321),aa:Leu,seq:cag)
     gene            444..2819
                     /gene="rnr"
                     /locus_tag="ACFOCN_000614"
     CDS             444..2819
                     /gene="rnr"
                     /locus_tag="ACFOCN_000614"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HFC6969807.1"
                     /translation="MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVP
                     SKIESLARELSITEDEYVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHK
                     DGFGFAVPLTPAKDGDFVLYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERAQ
                     SKVVGRFYMDRGVAILEPEDKRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRP
                     AVAKIIEVLGDYADSGMEIEIAVRKHHLPHQFSEACAKAVKKIPDHVRKSDLKGRVDL
                     RDLPLVTIDGETARDFDDAVFAEKIGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTS
                     VYFPRRVIPMLPENLSNGICSLNPNVERLCMVCDMVITYAGNIKEYRFYPAVMRSHAR
                     LTYNQVWKWLSGGIGHPFKAQIDTLYKLFKILQKKRFERGAVEFDSIETQMLFDDNGK
                     IEKIVPVVRNDAHKLIEECMLAANVCAADFLLKNKHTALFRNHLGPTPEKLAALREQF
                     GLLGLQLGGGDNPSPKDYAALAGQFKGRPDAELLQVMMLRSMQQAVYEPHCDGHFGLA
                     YEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTPKKSWQALGVHTSFCERRADDASRD
                     VENWLKTYYMRDKVGEIFEGKISGVANFGIFVTLDDIHIDGLVHISDLGEDYFNFRPE
                     IMAIEGERSGIRFNMGDRVAIKVARADLDDGKIDFVLIAEGSGRGRKVKSSASAKPAG
                     TAGKGKPKTAAGKKTARGGKVRGRGESAAAESGKKAKKPVPIKVKKRKGKS"
     gene            complement(3158..4621)
                     /gene="guaB"
                     /locus_tag="ACFOCN_000615"
     CDS             complement(3158..4621)
                     /gene="guaB"
                     /locus_tag="ACFOCN_000615"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003767939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HFC6969808.1"
                     /translation="MRIVEKAYTFDDVLLVPAHSTVLPRDVKLQTKLTREITLNLPLL
                     SAAMDTVTEARLAISMAQEGGIGIIHKNMPPEMQARAVSKVKRHESGVVKDPVTVAPT
                     TLIREVLEMRAQRKRKMSGLPVVENGKVVGIVTNRDLRFENRVDLPVSAIMTPRERLV
                     TVPEGTSIDEARELMHTHKVERVLVLNEKDELKGLITVKDILKTTEFPNANKDSEGRL
                     RVGAAVGTGGDTEERVKALVEAGVDVIVVDTAHGHSQGVIDRVKWVKETYPHIQVIGG
                     NIATAKAALDLVAAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIHNVAEALKGTGVP
                     LIADGGIRFSGDIAKALAAGAYSVMLGGMFAGTEEAPGEIELYQGRSYKSYRGMGSLG
                     AMSQGSADRYFQDKTDSADKYVPEGIEGRVPYKGPIVNIIHQLTGGLRSSMGYLGCAN
                     IAEMHEKAEFVEITSAGMSESHVHDVQITKEAPNYHR"
     gene            complement(4768..7326)
                     /gene="glnD"
                     /locus_tag="ACFOCN_000616"
     CDS             complement(4768..7326)
                     /gene="glnD"
                     /locus_tag="ACFOCN_000616"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HFC6969809.1"
                     /translation="MPANLSSALETFKQQRDAAEAHYLKTNRVSVFFREYTAAVETLL
                     AALWVEHFQNSALCLMAVGGFGRGELYPCSDVDLAVVSPAPLSDGIQEQIARFVQTLW
                     DCKLMPSVKSGGIDELCESVRNDITGDTAFLEARFLFGNRQTADELAEKMNAQRNVAA
                     FIEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATNLPALVK
                     QGILTRTEAGMLSHGYRRLAHIRIHLHLNAKRAEDRLLFDLQPQVAESMGYQGLNLRR
                     QSEELMRVFYRAIKTVKQLSGILTPMLQSRVSSTPLRVTLRIDDDYIQVNNQIAARHT
                     DIFFRRPEHIFKIVEIMQQRNDITALEPQTLRAWWGATRKINRSFYQNSENRHRFAGF
                     FRNGNGLTQTLRFLNLYGVLGRYLPAWEKIVGLLQHDLFHIYPVDDHILTVVRNVRRL
                     ALDMHSHELPYASALMQSFERQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHF
                     LTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDI
                     RGTNPKLWNAWRASLLESLFHAAGRYLAGNGGNPHALFGRRQQEAADLLTRAAVPEKQ
                     QKKLWNALGSAYFARHQSREILWHAANLVHDFETPIVRSRILPQSDSFQVMVFMPNGP
                     RLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAEL
                     NSFIHGHTVAEISSHSRRISRRSRYMPIAPSITITPEEDYPDWYSVEITAVNRPFLLA
                     DMAEIFFAHNVSLRYAKISTLDERAEDSFTVFSPDLKNPKIQSSLKQALLEQLA"
     gene            complement(7375..7695)
                     /locus_tag="ACFOCN_000617"
     CDS             complement(7375..7695)
                     /locus_tag="ACFOCN_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6969810.1"
                     /translation="MMGNKLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQC
                     GLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLNLMTNSADTRQMPS
                     ESGI"
     gene            complement(8019..8492)
                     /gene="bfr"
                     /locus_tag="ACFOCN_000618"
     CDS             complement(8019..8492)
                     /gene="bfr"
                     /locus_tag="ACFOCN_000618"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6969811.1"
                     /translation="MKGDRLVIRELNKNLGLLLVTINQYFLHARILKNWGFEELGEHF
                     FKQSIVEMKAADDLIERILFLEGLPNLQELGKLLIGESTEEIIACDLEKEKEKHEALI
                     AAISVAEAQQDYVSRDLLEKQKDTNEEHIDWLETQQELIGKIGLPNYLQTAAQED"
     gene            complement(8520..8984)
                     /gene="bfr"
                     /locus_tag="ACFOCN_000619"
     CDS             complement(8520..8984)
                     /gene="bfr"
                     /locus_tag="ACFOCN_000619"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6969812.1"
                     /translation="MQGNQAVLDYMNELLSGELAARDQYFIHSRLYSEWGYTKLFERL
                     NHEMEEETTHAEDFIRRILMLGGTPKMARAELNIGTDVVSCLKADLQTEYEVRDALKK
                     GIKLCEEAQDYVTRDLMVAQLKDTEEDHAHWLEQQLRLIELIGEGNYYQSQL"
     gene            complement(9447..10430)
                     /gene="lipA"
                     /locus_tag="ACFOCN_000620"
     CDS             complement(9447..10430)
                     /gene="lipA"
                     /locus_tag="ACFOCN_000620"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HFC6969813.1"
                     /translation="MSEIKTDDPKRGIKLRGADKTARIPIKVVPLQEKLKKPEWIRAK
                     LPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMIMGDICTRRCPFCDVG
                     HGRPNMLDPDEPKNLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPN
                     TKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARPGANYQHSLDLLKR
                     YKEMMPHIPTKSGIMVGLGETDEDVREIMRDMRAHNIEMITIGQYLQPSDGHLPVLRY
                     VTPEQFKIFEKEAYELGFSNAAIGAMVRSSYHADEQAAEALRESHGGCGHH"
     gene            complement(10423..11046)
                     /gene="lipB"
                     /locus_tag="ACFOCN_000621"
     CDS             complement(10423..11046)
                     /gene="lipB"
                     /locus_tag="ACFOCN_000621"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HFC6969814.1"
                     /translation="MKIIHKGLVEYLPTFEAMKTFNANRTASTEDELWVVEHPPVFTQ
                     GLAGKPEHLLIRDDIPIVQIDRGGQITYHGPGQLVVYTMIDFKRRKTSVRNIVSALEN
                     SIIATLAEYGIEAAADPKRPGVYVGERKIASLGLRIKGGSVYHGLALNVNMDLSPFTH
                     INPCGYAGMEMTQIADFVQPCPTPDEVAAKLTAHLETQFTPKADNNE"
     gene            complement(11048..11323)
                     /locus_tag="ACFOCN_000622"
     CDS             complement(11048..11323)
                     /locus_tag="ACFOCN_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HFC6969815.1"
                     /translation="MTEQKNKTSLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDT
                     QAHHITTRPSSKGNYTGATVQVKVENQEQLDNIYRALTSHKLVKVVL"
     gene            11508..12578
                     /locus_tag="ACFOCN_000623"
     CDS             11508..12578
                     /locus_tag="ACFOCN_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HFC6969816.1"
                     /translation="MYRRKGRGIKPWMGAGAAFAALVWLVFALGDTLTPFAVAAVLAY
                     VLDPLVEWLQKKGLNRASASMSVMVFSLILLLALLLIIVPMLVGQFNNLASRLPQLIG
                     FMQNTLLPWLKNTIGGYVEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSI
                     GNLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVM
                     LIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVPYLGAFTGLLLATVAALLQFGSWNGI
                     LAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAA
                     VTLVLLREGVQKYFAGSFYRGR"
     gene            complement(12825..13772)
                     /locus_tag="ACFOCN_000624"
     CDS             complement(12825..13772)
                     /locus_tag="ACFOCN_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stomatin-like protein"
                     /protein_id="HFC6969817.1"
                     /translation="MEFFIILLVAVAVFGFKSFVVIPQQEVHVVERLGRFHRALTAGL
                     NILIPFIDRVAYRHSLKEIPLDVPSQVCITRDNTQLTVDGIIYFQVTDPKLASYGSSN
                     YIMAITQLAQTTLRSVIGRMELDKTFEERDEINSTVVSALDEAAGAWGVKVLRYEIKD
                     LVPPQEILRSMQAQITAEREKRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAV
                     NASNAEKIARINRAKGEAESLRLVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVA
                     AFNNLAKESNTLIMPANVADIGSLISAGMKIIDSSKTAK"
     gene            complement(13787..14194)
                     /locus_tag="ACFOCN_000625"
     CDS             complement(13787..14194)
                     /locus_tag="ACFOCN_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HFC6969818.1"
                     /translation="MTVWFVAAVAVLIMELLTGTVYLLVVSAALAGSGIAYGLTGSTP
                     AAVLTAALLSALGIWFVHAKTAVGKVETDSYQDLDAGQYVEILRHTGGNRYEVFYRGT
                     HWQAQNTGQEELEPGTRALIVRKEGNLLIIANP"
     gene            14275..14934
                     /gene="ung"
                     /locus_tag="ACFOCN_000626"
     CDS             14275..14934
                     /gene="ung"
                     /locus_tag="ACFOCN_000626"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HFC6969819.1"
                     /translation="MDTWHDALGGEKQQPYFQEILNAVRQERLSGQIIYPPAADVFNA
                     FRLTAFDRVKAVILGQDPYHGAGQAHGLAFSVRQGIRIPPSLLNIYKELETDIEGFSI
                     PAHGCLTAWAEQGVLLLNTVLTVRAGQAHSHALLGWERFTDTVIRQLATHRKHLVFML
                     WGGYAQQKGRLIDSQNHLILTAPHPSPLSAYRGFFGCRHFSQANSYLSRHGIDPINWK
                     L"
     gene            14954..15526
                     /locus_tag="ACFOCN_000627"
     CDS             14954..15526
                     /locus_tag="ACFOCN_000627"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFC6969820.1"
                     /translation="MLKLHLWNQSIYGVDAVIVTHTHEDHWGETAARSIPKNLPVYVQ
                     HQADAAKIRSQGFTDVRVLNGSTVFNGVTISKTGGVHGTEAMYANPQLAEILGDAMGV
                     VFQSSGHKTAYIMGDTVWTADVNKALNRYKPDYLIMNTGYALISGITVHMDTVNHTAV
                     SRTDMRKFIRGQGIESRVNVPEDGEILKLD"
     gene            complement(15641..16051)
                     /locus_tag="ACFOCN_000628"
     CDS             complement(15641..16051)
                     /locus_tag="ACFOCN_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HFC6969821.1"
                     /translation="MNHIARQFAILLGEGLKPLGIAPAQFPILLELWQKDGLSQQELV
                     ERADLKQATIANTLARMERDGLITREPNPDDARSRLIMLTEQARALQQQSTEIAQAIN
                     QTALSDLSANEQKLFLEMAAKIVARQQEMITGEK"
     gene            16321..>16511
                     /locus_tag="ACFOCN_000629"
     CDS             16321..>16511
                     /locus_tag="ACFOCN_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HFC6969822.1"
                     /translation="MKPDTLQSYGSTTRFLHWTIAACYLFMFATVIAWNIDENLKFLI
                     NSHKAVGILLLILSVWRVAT"
BASE COUNT         3665 a         3971 c         4662 g         4213 t
ORIGIN      
        1 ataccgcaaa acataccaca aaaaacggta acggatagtt gtaagcggtt gatgacgatt
       61 atagacaata acgggttttc ccaatgaaat tattgtttga ataataaaaa atcccaaacc
      121 gtaaaagttt gggatttgta tttggcagag aggaagggat tcgaaccctc gatacgctat
      181 tcacgtatac acgctttcca ggcgtgcgac ttaaaccact catccacctc tctaatggcg
      241 gaaattatcc caatcggaat aatttatttg gtgcccggga gaagactcga acttccacac
      301 ccgtgaggat actagcacct gaagctagcg cgtctaccaa ttccgccacc cgggctttgc
      361 tttatttgct gttttgcggt acagtgtcct gccgcaaaga agtcgctatt atatagttca
      421 taaagagaat gtcaacagtc caaatgaata aaaatattaa atctttaaat ttacgggaaa
      481 aagacccgtt tttaagtcgt gaaaaacagc gttatgaaca tcctttgccc agtcgggaat
      541 ggataatcga attgttggag cgcaaaggtg tgccttcaaa aatcgaatcg cttgcgcgcg
      601 agctgtcgat tacggaagac gagtatgtct ttttcgaacg ccgtctgaag gcgatggcgc
      661 gggacggtca ggttttaatc aaccgccggg gcgcggtttg cgcggcggac aaattggatt
      721 tggtcaaatg ccgtgtcgag gcgcacaaag acggtttcgg ttttgccgtg ccgctcacgc
      781 ccgccaaaga cggtgatttt gttttgtatg aacgccagat gcgcggcatt atgcacggcg
      841 atattgtcac tgttcgtcct gccggcatgg accgtagggg ccgccgcgaa gggacagttc
      901 tggatattgt cgaacgcgcg caaagcaaag tggtcggccg tttctatatg gataggggcg
      961 tggcgatttt ggagccggaa gacaagcgtc tgaaccaaag catcgtattg gaaccggacg
     1021 gcgtggcgcg tttcaaacct gaatccggtc aggtcatcgt cggcgaaatt gaggtttatc
     1081 ctgagcaaaa ccggccggca gtggcaaaaa tcatcgaagt tttgggcgat tatgccgaca
     1141 gcggcatgga gattgaaatt gccgtgcgca agcatcattt gccgcaccaa ttcagtgaag
     1201 cgtgtgccaa agccgtgaaa aaaattcccg accatgtacg caaaagcgat ttgaaaggcc
     1261 gcgtcgattt gcgcgacctg cctttggtaa cgattgacgg cgaaacggct cgagattttg
     1321 acgatgcggt gtttgccgaa aaaatcggac gcaattaccg tctggtcgtg gcgattgccg
     1381 atgtcagcca ttatgtccgc cccgatgacg ctatcgacac ggacgctcag gaacgcagca
     1441 ccagtgttta cttcccgcgc cgcgtgattc ccatgttgcc ggaaaacctg tccaacggca
     1501 tctgctcgct caatcctaat gtcgagcgtt tgtgtatggt gtgcgatatg gttatcactt
     1561 acgcgggcaa tattaaagaa taccgcttct accccgccgt gatgcgctct catgcccgcc
     1621 tgacctacaa ccaagtttgg aaatggcttt caggcggcat cgggcatccg ttcaaagccc
     1681 aaatcgacac gctttacaaa ctcttcaaaa tccttcagaa aaagcgtttc gaacgcgggg
     1741 cggtggagtt tgacagcatc gaaacccaaa tgcttttcga cgacaacggt aaaattgaaa
     1801 aaatcgtccc cgttgtccgc aacgatgccc acaagctgat tgaagaatgt atgttggcgg
     1861 caaacgtttg cgcagcggat tttctgttga aaaacaagca taccgcattg ttccgcaacc
     1921 atttggggcc cacgcccgaa aaactcgccg ccttgcgcga gcagttcggt ctgttggggc
     1981 ttcaacttgg cggcggcgac aacccgtcgc cgaaagacta tgccgcgctt gccggacagt
     2041 tcaaaggcag gccggatgcc gaattgctgc aagtcatgat gttgcgctcc atgcaacagg
     2101 cggtttacga accgcattgc gacggacact ttggtcttgc ctacgaagca tacgcccact
     2161 tcacctcgcc catccgccgc tatcccgacc tgaccgtaca ccgcgccatc aaagccgtgt
     2221 tgaatcagca aacctacacg ccaaaaaaaa gctggcaggc tttgggcgtg catacctcgt
     2281 tctgtgagcg ccgtgccgac gacgccagcc gcgacgtgga aaactggctg aaaacctact
     2341 atatgcgtga caaagtcggc gaaatatttg aaggcaaaat ttccggggtg gcaaattttg
     2401 gaatatttgt cactttggac gatatccata tcgacggtct ggtgcatatc agcgatttgg
     2461 gcgaagacta tttcaacttc cgccccgaaa tcatggcaat cgaaggtgaa cgcagtggca
     2521 tccgtttcaa tatgggcgac agggttgcca ttaaagtggc ccgtgccgat ttggatgatg
     2581 gaaaaatcga ttttgtcctg attgccgagg ggagcggcag agggcggaaa gttaaatcat
     2641 ccgcgtctgc caaaccggca gggacggcgg ggaaagggaa gccgaaaacc gccgccggga
     2701 aaaaaacagc ccgaggcggc aaagtaaggg gaaggggcga gtctgccgcc gcagaatcgg
     2761 ggaaaaaggc aaagaaaccg gttccgatta aggtaaaaaa acggaaaggc aaatcataat
     2821 gctgacgggg cggcttgggg agggaggggc atactttccc gaagccgccg cccgattttt
     2881 tgatatggcg gccggcgcat catttcaggc caatcgaaac gcccgtattg aaagattgcg
     2941 tttatttcca ccgccgtttt aaaggccagc ggtattcggc agacggggcg caaacggcgt
     3001 tcagacggca ttttcattct ttcggcgtgt ccgtccgaat ggctttgccc gtccgcgcaa
     3061 tcagcccgtg cggcttgcct tgaacggaca aaaaatgccg tctgaaaccc gaaaatcagg
     3121 tttcagacgg cattttgcct tgaaaaggct gttcaaatca gcggtggtag ttcggtgctt
     3181 ctttagtgat ttgaacgtcg tgaacgtgcg attcgctcat acctgcggaa gtgatttcca
     3241 caaattcggc tttttcgtgc atttcggcaa tattggcgca acccaagtaa cccatactgg
     3301 aacgcagacc gccggtcagc tggtggatga tgttcacaat cgggcctttg taaggaacgc
     3361 ggccttcgat gccttcgggg acgtatttgt ctgcgctgtc ggttttgtct tggaagtagc
     3421 ggtcggcaga accttggctc atcgcgccca aggaacccat accgcgatag gatttgtacg
     3481 agcggccttg gtagagttcg atttcgcccg gcgcttcttc cgtgcctgca aacataccgc
     3541 cgagcatgac gctgtacgcg cctgcggcga gggctttggc gatgtcgccg gagaagcgga
     3601 tgccgccgtc ggcaatcagc ggaacgcccg tgcctttgag ggcttcggca acgttgtgaa
     3661 tggcggtcag ttgcggcacg ccgacacctg ccacgatacg ggtggtgcaa atcgatcccg
     3721 gaccgatacc gactttgacg gcatccgcgc cggcggcgac caaatccaat gcggctttgg
     3781 cagtggcgat gttgccgccg atgacttgga tgtgtggata ggtttctttc acccatttca
     3841 cgcggtcaat cacgccttgg ctgtgcccgt gggcagtatc gacgacaatc acgtccacgc
     3901 cggcttcgac caaggctttg acgcgctctt cggtatcgcc gccggtgccg actgccgcac
     3961 cgacgcgcag acggccctcg gagtctttgt tggcgttggg aaactcggtg gtttttaaaa
     4021 tatctttaac ggtaatcaga cctttgagtt cgtctttttc gttcagaacc aaaacgcgct
     4081 cgactttgtg cgtgtgcatc agttcgcgcg cttcgtctat gcttgtgcct tcggggacgg
     4141 taaccagacg ttcgcgcggg gtcataatgg cggaaacggg caaatcgacg cggttttcaa
     4201 aacgcaggtc gcggttggtt acgatgccga cgactttgcc gttttcaacg acgggcaggc
     4261 cggacatttt gcgtttgcgc tgcgcgcgca tttccaagac ttcgcggatg agcgtcgtcg
     4321 gtgcaacggt tacggggtct ttgaccacgc cgctttcgtg gcgtttcact ttggaaacgg
     4381 cgcgcgcctg catttcgggc ggcatgtttt tatggatgat gccgatgccg ccttcctgtg
     4441 ccatcgaaat ggcgaggcgc gcctcggtaa cagtgtccat cgcggcggaa agcaggggga
     4501 ggttaagtgt gatttcgcgg gtgagcttgg tttgaagttt aacgtctcgc ggcagcacgg
     4561 tcgaatgtgc gggaaccaac aaaacatcgt cgaaagtata ggctttttct acgatacgca
     4621 taatgctcgg tctttcagtt tgtgcaagat gcacggcatt atagcacgtt accggcggct
     4681 tgacagtcta tattgtttgc aatatccccc gccttcagac ggcatacggc gcggcggcgg
     4741 aatgccgtct gaaaaccggc agggtgctta tgccaactgt tccagcaaag cctgtttcaa
     4801 tgaggactgg atttttgggt ttttcaggtc ggggctaaaa acggtaaaac tgtcttcggc
     4861 gcgttcatcc agtgtggaga ttttggcata gcgcaggctg acgttgtggg cgaaaaagat
     4921 ttccgccata tcggcgagca ggaaggggcg gttgacggcg gtaatttcga cggagtacca
     4981 gtcggggtag tcttcttcgg gggtaatggt gatgcttggc gcgatcggca tgtagcggct
     5041 gcggcggctg atgcggcggc tatggctgga gatttcggca acggtgtgtc cgtggataaa
     5101 gctgttgagt tcggcttcga gcgcgctttg gatgtcgggg tagtcttcgg gagcgtgctg
     5161 cgaggggatt tgcacgatga aggtgtcgag gatgtagtcg tgttcggtga taaaggcgcg
     5221 ggcggcgaga atgtcgaagc cgtggcggct gaagatacgg cagaggcggg cgaacaggcg
     5281 cgggccgttg ggcataaaga ccatcacttg gaagctgtcg ctttggggca ggatgcggct
     5341 gcggacgatg ggggtttcaa aatcgtgtac gaggttggcg gcgtgccaca ggatttcgcg
     5401 ggactggtgg cgggcgaagt aggcggaacc gagcgcgttc caaagctttt tctgctgttt
     5461 ttcggggacg gcggcgcggg tgagcaagtc ggcggcttct tgttggcggc ggccgaagag
     5521 ggcgtgcggg ttgccaccgt tgcctgcgag gtagcgtccg gcggcatgga agaggctttc
     5581 cagcaggctg gcgcgccatg cgttccacag cttgggattg gtaccgcgta tgtcggaaat
     5641 ggtcagaagg tagagcgcgc tgaggcgttc gtgggtttgg acgcgtttgc agaaggcatc
     5701 gagtacgctg gggtcttgga tgtcttcttt ttgggcgacg gtggacataa gaagatggtt
     5761 ttcaaccagc caggcgagca ggtcgctttc ttcttcggtc aggaagtggt cggcggcaaa
     5821 ttggcgcgcg tctgcgatgc cttgtatggc atggtcgccg ccgcgtcctt tggcgatgtc
     5881 atggaaaaag gcggcaaggt agaggatgtc ttgtctttca aaggactgca tcagtgcaga
     5941 ggcgtagggc agctcgtggc tgtgcatatc caaggcaagg cggcggacgt tgcggacgac
     6001 ggtgaggatg tggtcgtcca cgggatagat gtggaacagg tcgtgctgga gcaggccgac
     6061 gattttttcc cacgcgggca ggtagcgtcc caatacgccg tagaggttga ggaagcgcag
     6121 ggtttgggtc agtccgttgc cgttgcggaa aaagccggcg aagcggtggc ggttttcaga
     6181 attttggtag aagctgcggt tgattttgcg cgtcgcgccc caccatgcgc gcagggtttg
     6241 cggttcgagc gcggtaatat cgttgcgctg ctgcatgatt tcgacgattt tgaaaatgtg
     6301 ttcgggccgt ctgaaaaaaa tatcggtgtg ccgcgcggcg atttggttgt tgacttggat
     6361 gtagtcgtcg tcaatccgca gggtaacgcg caacggggtg gaggaaacgc ggctttgcag
     6421 cataggcgtg aggatgccgc tcagttgttt gacggtttta atcgcgcggt aaaacacgcg
     6481 catcagttct tcgctttgac ggcggaggtt caagccttga taacccatac tttcggcgac
     6541 ttgcggctgc aaatcgaaca gcaggcggtc ttcggcgcgc ttggcgttta aatgcagatg
     6601 gatgcggatg tgggcgaggc ggcggtagcc gtgtgaaagc ataccggctt cagtgcgcgt
     6661 cagaatgcct tgtttgacca gcgcaggcag gttggtcgcc aagccttgtg ctttcgctat
     6721 ccaaagcagg gtatggatgt cgcgtagacc gccgggacag cttttgatgt ttggttccaa
     6781 caccgctccc gaaccttgcg atttggcatg gcggtgttcc atctccacca attttgcttc
     6841 gataaatgcc gctacattgc gttgcgcgtt cattttttcc gccagttcat ccgccgtttg
     6901 gcggttgcca aacaaaaaac gggcctctaa aaacgctgtg tcccccgtaa tatcattgcg
     6961 cacgctttcg cacagttcgt caatgccgcc gctttttaca gacggcatca gtttgcagtc
     7021 ccacagggtt tggacaaacc gggcaatctg ttcctgaatg ccgtctgaaa gcggggcagg
     7081 ggagacaacc gccaaatcca catccgaaca gggatacagt tcgccgcgcc cgaagccgcc
     7141 caccgccatc agacataacg cgctgttttg aaaatgttct acccacaatg ctgccagtaa
     7201 ggtttcgact gccgccgtgt attccctgaa aaataccgac acgcggttgg ttttcaaata
     7261 atgcgcttcg gcggcatcgc gctgctgttt gaaggtttcc agtgctgaag acaggtttgc
     7321 aggcattttt attctttcga ttggcgggaa aaagggaggc ggatggttca gcggtcaaat
     7381 accgctttca gacggcattt gtcgggtatc ggcggaattg gtcatcaggt tcaaccgttc
     7441 ctgcggcggc agcagcaact gatacgccgc cacgcccaag gccgccgcca ttttttcgat
     7501 attcgacagg gcgatgttcc agcgtttgcg ctcgactgcc gacacataag tcctgtccaa
     7561 accgcattgc cgcgccaatt cttcttgcga ccaacccttg ttcacgcgga aaagccgcat
     7621 attgtatgcc aataccgccc gcaaatcctg ctcgtcaggc agttcggcag gcagagtcaa
     7681 tttgttgccc atcatttgtt tccggataaa tgttaaagtt aagcatttgc tgttacggat
     7741 tttacttcac ataaaagcta aaaaaaaggg gtggcggcag ccacacccaa acacacacac
     7801 atcaagagga aagaggtaaa atcaagacag attgggaaac agcaaacaaa caatctagat
     7861 ttcatgtcgg tattatcaaa caaaaaccgt tatcgagtat tgattcaaat caatttcgat
     7921 tttattcgca atccgataaa gaaaaacggc atatccgttt atatggatat gccgtctgat
     7981 ggtgcagggg actgctatat ttggcagtga tttgtgtttt agtcctcttg cgccgctgtt
     8041 tgcaggtagt tcggcaaacc gattttgccg atcagttcct gctgggtttc gagccagtcg
     8101 atgtgttctt cgttggtgtc tttttgtttt tccaacaaat cacggctgac ataatcctgt
     8161 tgcgcttctg ccacggaaat tgccgcaatc aatgcctcat gtttttcttt ctctttttcc
     8221 aaatcgcagg cgatgatttc ttcggtggac tcgccaatca gaagcttgcc cagttcttgc
     8281 aggttcggca gaccttcgag gaacagaatg cgctcgatca aatcgtcggc agctttcatt
     8341 tcaacgatgg actgtttgaa gaaatgttcg cccagttctt caaagcccca gtttttcaaa
     8401 atacgggcgt gaaggaaata ttggttgatg gttaccagca gcaagcctaa gtttttgttt
     8461 agctcgcgga taaccagacg gtcgcctttc atacggactc cttttattcc gaatacggat
     8521 tacagttggc tttggtagta gttgccttcg ccaattaact cgatcaggcg aagctgctgt
     8581 tccagccagt gggcgtggtc ttcttcggta tctttcagtt gggcaaccat caggtcgcgc
     8641 gtaacatagt cttgagcctc ttcgcacagt ttgatgcctt ttttcaacgc atcacgtact
     8701 tcatattcgg tttgcaggtc ggctttgagg caggaaacca cgtccgtgcc gatattcagt
     8761 tcggcgcgtg ccattttcgg cgtgccgccc agcatcagga tgcggcggat gaagtcttcg
     8821 gcgtgtgtgg tttcttcttc catctcgtgg ttgagacgtt caaaaagttt ggtgtagccc
     8881 cattcggagt agaggcggga gtggataaag tattggtcgc gtgccgccag ctcgccagac
     8941 agcaattcgt tcatgtaatc taaaactgct tgattgcctt gcataatatt tctcttttct
     9001 taatttgggt ttcgtgtagt taaacagtgg atgtagcact gttcggaatg cgtgcattgt
     9061 atgcaaaagc tgtcggcatg acaaattttc tatttaaaat acaaacaatt atcaaaagaa
     9121 atagggcgta ttccccgatg ccttccaaat cagtatgctg ttttttatcg gttttttgtg
     9181 ctgttaaaac taataatcca tattatccat aaagaacatt tacacttgtt aaccatagct
     9241 aaaagcaaat acggtacggt tttttatcaa aatttataat gaatcgttct cattaaccga
     9301 cagattcttt tgagattatc ggattttggg aataaattat gccgtctgag gggctttcag
     9361 acggcataga caattaaagc tgattaaaca acgcggcaga cagcagcgta ggaaattatt
     9421 ttttacttcg gaacggtatt ttgggtttaa tgatgcccgc aaccgccgtg gctttcgcgt
     9481 aaggcttcgg cagcctgttc gtcggcgtgg tagctggaac gtaccatcgc gccgatggcg
     9541 gcattgctga agcccagttc gtatgcttct ttttcaaaga ttttgaactg ctcgggcgta
     9601 acgtagcgca ggacgggcag gtgtccgtct gaaggctgga ggtactgtcc gatggtaatc
     9661 atttcgatat tgtgcgcccg catatcgcgc ataatttcac gcacgtcttc gtctgtttcg
     9721 cccaagccga ccatgatgcc ggatttggtc gggatgtgcg gcatcatttc tttataacgt
     9781 tttaataagt ctaaagaatg ttgataattg gcaccgggac gggcttttct gtacaggctc
     9841 ggatgggttt ctaggttgtg gttcatcacg tcgggcgggg tttcggcaag gattttgagt
     9901 gcgatgtcca agcgtcctcg gaagtcgggg acgaggattt cgattttggt gttcgggctg
     9961 gtttcgcgga tggctttgat gcagtcggcg aaatgctgtg cgccgccgtc gcgcaggtcg
    10021 tcgcggtcga cggaggtgat gacgacgtaa cgcaggttca tggctttgac ggattcggcg
    10081 aggtttttcg gttcgtcggg gtcgagcata ttgggccgac cgtgtcccac gtcgcagaac
    10141 gggcagcggc gggtgcagat atcgcccata atcatgaagg tcgccgtgcc tttgctgaag
    10201 cattcgccga tgttggggca ggaggcttcc tcgcaaacgg tgtgcatctt ttgttcgcgc
    10261 aaaatgtctt tgatttcaaa gaatttgcgc gatgggagtt tggcgcgtat ccattcgggc
    10321 tttttcagtt tttcctgaag ggggacgact ttgatgggga tgcgcgcggt tttgtccgcg
    10381 cctctgagtt tgatgccgcg tttggggtcg tcggttttga tttcactcat tgttatctgc
    10441 tttcggtgtg aattgtgttt caaggtgtgc ggtaagtttg gcggcgactt cgtccggcgt
    10501 ggggcagggt tggacaaaat ccgcgatttg cgtcatttcc ataccggcgt agccgcaggg
    10561 gttgatgtgg gtaaacgggc ttaaatccat attgacgttg agcgcaaggc cgtgatagac
    10621 ggaacctcct ttgatacgca gccccagtga ggcgattttg cgttcgccga cgtaaacgcc
    10681 ggggcgtttg ggatctgccg ccgcttcgat gccgtattcc gccaatgtgg cgatgatgct
    10741 gttttcaagc gcggaaacaa tgttgcggac gctggttttg cgccgtttga aatcaatcat
    10801 cgtataaacg accaattgcc cgggtccgtg ataggtaatc tgcccgcccc ggtcgatttg
    10861 gacgatggga atgtcgtcgc ggatcagcag gtgttcgggt ttgccggcca gcccctgtgt
    10921 gaacacgggg ggatgttcta ccacccacaa ttcatcttcg gtagaggcgg tacggttggc
    10981 gttgaaagtt ttcattgcct caaaagtcgg cagatattca accaaacctt tatgtatgat
    11041 tttcatctca aagtaccact ttgaccaatt tgtgcgaagt cagcgcgcgg tagatattgt
    11101 caagttgttc ttggttttca acctttactt gtacggtggc gccggtatag ttgcctttgc
    11161 tgctcggacg cgtggtgatg tggtgcgcct gcgtgtcggg ggcgtggagg cggacggtgt
    11221 ccaataccgc ctgctcgaac tcgggatgca ccgcgcccat tactttcaat gggaaggtgc
    11281 agggaaattc gatgagggat gttttgtttt tttgttcggt catgatgtgc tgccttgtcg
    11341 tgtacggtat gccgtctgaa ggcgggtttg cctttcagac ggcatcggat gtgcgttatt
    11401 ttagcctaaa ccgcgataac aggctatcgg gaaggcggag gcttttttga cggcgcggcg
    11461 gttctgctat actggcgcac aatattattt ttagaagggt ggtttttatg tatcggagga
    11521 aagggcgggg catcaagccg tggatgggtg ccggtgcggc gtttgccgcc ttggtctggc
    11581 tggttttcgc gctcggcgat actttgactc cgtttgcggt tgcggcggtg ctggcgtatg
    11641 tattggaccc tttggtcgaa tggttgcaga aaaagggttt gaaccgtgca tccgcttcga
    11701 tgtctgtgat ggtgttttcc ttgattttgt tgttggcatt attgttgatt attgtcccta
    11761 tgctggtcgg gcagttcaac aatttggcat cgcgcctgcc ccaattaatc ggttttatgc
    11821 agaacacgct gctgccgtgg ttgaaaaata caatcggcgg atatgtggaa atcgatcagg
    11881 catctattat tgcgtggctt caggcgcata cgggcgagtt gagcaacgcg cttaaggcgt
    11941 ggtttcccgt tttgatgagg cagggcggca atattgtcag cagtatcggc aacctgctgc
    12001 tgcttccctt gctgctttac tatttcctgc tggattggca gcggtggtcg tgcggcattg
    12061 ccaaactggt tccgaggcgt tttgccggtg cttatacgcg cattacaggc aatttgaacg
    12121 aggtattggg cgaatttttg cgcgggcagc ttctggtgat gctgattatg ggtttggttt
    12181 acggcttggg gttggtgctg gtcgggctgg attcggggtt tgcaatcggt atggttgccg
    12241 gtattttggt ttttgttccc tatttgggcg cgtttacagg actgctgctg gcaaccgtcg
    12301 ccgccttgct ccagttcggt tcgtggaacg gcatcttggc tgtttgggcg gtttttgccg
    12361 taggacagtt tctcgaaagt tttttcatta cgccgaaaat cgtgggagac cgtatcgggc
    12421 tgtcgccgtt ttgggttatc ttttcgctga tggcgttcgg gcagctgatg ggctttgtcg
    12481 gaatgttggc aggattgcct ttggccgccg taaccttggt cttgcttcgc gagggcgtgc
    12541 agaaatattt tgccggcagt ttttaccggg gcaggtaggc ggttccgaaa catatttgaa
    12601 gcggaataca accctgcccg agtttaaata tagtggatta acaaaaatca ggacaaggcg
    12661 acgaagccgc agacagtaca gatagtacgg caaggcgagg caacgccgta ctggtttttg
    12721 ttaattcact ataatttgaa gcggaataca accttgcccg ggtttaaata aaaatgccgt
    12781 ctgaaccccg aaaacagagc ttcagacggc attttcatca cggcttattt ggcggttttg
    12841 ctgctgtcga taattttcat accggcagaa atcaggctgc cgatgtcggc aacattggcg
    12901 ggcataatca gcgtattgct ttctttggca agattgttga acgcagcgac gtattgttcc
    12961 gcaatcttca gattgaccgc atccgcgccg ccttgggttt gaagggcggc ggcaatttga
    13021 cggatggctt cggcattggc ttcggcaaca aggcgcaagg attccgcttc acctttggcg
    13081 cggttgatgc gggcgatttt ttcggcattt gacgcattga ccgcagcctg agcctcgcct
    13141 tcggattgtt ggatttcggc ttcgcgctga ccactggcaa ggttgatttg ttcgatttta
    13201 cgaccttcgg attcggcgat acgggcgcgt ttttcgcgtt cggcagtaat ttgcgcctgc
    13261 attgagcgaa ggatttcttg cggcggaacc aagtctttaa tctcataacg caaaaccttc
    13321 acgccccaag ctccggcggc ttcatcgagg gcggagacga cggtgctgtt gatttcgtcg
    13381 cgttcttcaa acgttttgtc caactccata cgcccgataa cggaacgcag cgtcgtttgg
    13441 gcaagctggg taatcgccat aatgtagttg ctcgaaccgt atgaggcgag tttgggatcg
    13501 gttacttgga aatagatgat gccgtcaacc gtcagctggg tgttgtcgcg cgtgatgcag
    13561 acctggctgg gtacgtctaa agggatttct ttcagcgaat gacggtaggc gacgcggtcg
    13621 ataaagggaa tcaaaatatt caaaccggcc gtcaaggcgc gatggaaacg tccaagcctt
    13681 tcgacaacgt ggacttcctg ctgtgggatg acgacaaagg atttgaagcc gaaaacggca
    13741 acggctacca acaagataat gaaaaattcc ataattcctc cgagtgttaa gggtttgcga
    13801 tgataagaag gttgccttcc ttgcggacga ttagggcgcg agttcctggt tcaagctctt
    13861 cttgccccgt attttgagcc tgccagtgcg taccgcgata aaaaacttcg taacggttgc
    13921 cgcctgtgtg tcggaggatt tcgacatatt gtccggcatc caaatcctga tatgaatccg
    13981 tttcaacttt tcccacggcg gttttggcgt gtacgaacca aatacccagc gcggaaagca
    14041 gagcggcggt caagacggcg gcaggcgtac taccggtcag cccgtaagca atgcccgaac
    14101 ccgccaaagc cgcgctgaca accaaaagat aaaccgttcc cgtcaataat tccatgatta
    14161 agacggcaac agcggcaaca aaccatacag tcatacattt ccccacaaag cgcgtcgttt
    14221 gacaaaataa cgcaatatca gcagtatagc cgaatttgaa aggatagggc agatatggac
    14281 acttggcacg atgcactcgg cggcgaaaaa cagcagccgt attttcagga aattttaaat
    14341 gcagtcaggc aggaacgttt gtcgggacaa atcatctatc cgccggcggc ggatgtgttc
    14401 aacgcattcc gcctgacagc gttcgaccgg gtcaaagccg tcattctcgg acaagatccg
    14461 tatcacgggg cagggcaggc gcacggtttg gcattttccg tccggcaggg tatccgcata
    14521 ccgccgtctt tactcaatat ctacaaggag ttggaaaccg acatcgaagg cttttccatt
    14581 cccgcgcacg gctgtctgac agcgtgggcg gagcagggcg tattgcttct gaacacggtt
    14641 ttgacggtgc gtgcaggaca ggcgcattcg cacgcccttt taggctggga acgctttacc
    14701 gataccgtca tcaggcagct tgcgacacac cgcaagcacc ttgtcttcat gttgtggggt
    14761 gggtatgcac aacaaaaagg gaggctgata gacagtcaaa atcatttgat attgaccgca
    14821 ccgcatccgt ctcctctgtc ggcatatcgc ggttttttcg gctgccgcca tttttcacag
    14881 gcaaacagct atttgagccg gcacggtatc gatccgataa actggaagct gtgaatgccg
    14941 tctgaatgcc aagttgctta aactgcactt atggaaccag tcaatctacg gtgtggatgc
    15001 agttatcgtt acccataccc acgaagacca ttggggcgaa accgccgcac gttccattcc
    15061 gaaaaacctg cccgtatatg tgcagcacca agccgacgcg gcaaaaatcc gcagccaagg
    15121 atttactgat gtacgcgtgt tgaacggcag cactgtcttc aacggcgtaa ccatcagcaa
    15181 aaccggcggc gtacatggta cagaagccat gtatgccaac ccgcagctag ccgaaatctt
    15241 aggtgatgca atgggtgtag tattccaaag cagcggacac aaaaccgctt atattatggg
    15301 tgatactgtg tggacggcag atgtaaacaa agcattgaac cgctacaaac ccgattatct
    15361 gattatgaac acgggctacg cgctgatttc aggcattacc gtacacatgg ataccgtgaa
    15421 tcataccgcc gtcagccgca ccgatatgcg taaatttata cgcggtcaag gcattgaaag
    15481 ccgtgtgaac gttccagaag acggagaaat cctgaaactg gattgataaa cgacacatta
    15541 ccctaagcag cctgcacctt gttttcaaag cgcaggctgc tttcagacga cctcaaaagc
    15601 agcctgcact ttaaaattcc aagttgcgcc atcggccccc tcacttctcg cccgtaatca
    15661 tctcttgctg tcgcgccaca atttttgccg ccatttccaa aaacaacttt tgttcgtttg
    15721 ccgacaaatc cgacaaagcc gtttggttga tggcttgggc aatttccgtg gactgctgct
    15781 gcaaggcgcg agcttgctcc gtcagcataa tcaggcggct gcgcgcatcg tcgggattcg
    15841 gttcgcgcgt aatcagtccg tcgcgctcca tccgcgccaa agtgttggca atcgttgcct
    15901 gcttcaaatc ggcgcgttcc accaattcct gctggctcaa accgtctttt tgccacagtt
    15961 ccagcaatat cggaaattgc gcgggggcga tgcccaaagg ctttaaacct tcgcccaata
    16021 aaatggcaaa ttggcgggca atgtggttca tcaaatagcc tgccgattca gttttgaaaa
    16081 cttcgtccac tttgttttct ttcaaatcaa attgttgcgg attatatcac aaatatagct
    16141 tgctatctta atacatagca cgctatactt attgcagctt aatagcttgc tatctaaaca
    16201 ctttcagacg acctatctta aatgttcaag aacacttatg aacttcaata ctttaaagaa
    16261 ggttttccta tctgtaagcc ataccgaaat ccgactaacc ctttatcaag agaaagcatc
    16321 atgaaacccg acactttgca aagctacggc tcaacaaccc gcttcctgca ttggacaata
    16381 gcagcttgct acctgtttat gttcgctacc gtcattgcgt ggaatatcga cgaaaacctg
    16441 aaatttctaa tcaattcgca caaagcagtc ggaatcctgc tgctgatatt gtctgtttgg
    16501 cgcgtagcaa c
//
LOCUS       DAXIFD010000026        16464 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.026, whole genome shotgun sequence.
ACCESSION   DAXIFD010000026 DAXIFD010000000
VERSION     DAXIFD010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16464
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.026"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..92
                     /locus_tag="ACFOCN_000630"
     CDS             <1..92
                     /locus_tag="ACFOCN_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Imm8 family immunity protein"
                     /protein_id="HFC6969823.1"
                     /translation="YCSKETWDLTLSNLLRFFSWEFEDYNPNT"
     gene            216..431
                     /locus_tag="ACFOCN_000631"
     CDS             216..431
                     /locus_tag="ACFOCN_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969824.1"
                     /translation="MNIINYTGDDIIISLTREELQLLRSLVIEIYAGVCIDAEEFEIV
                     SGIRNSKLVQELEQQLIEAYDLMDTKG"
     gene            complement(621..1160)
                     /locus_tag="ACFOCN_000632"
     CDS             complement(621..1160)
                     /locus_tag="ACFOCN_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6969825.1"
                     /translation="MSQVFKDFDLSSVWESDSWADENYKEAPFTPEILAAVESELGYK
                     LPQSFIELMAVQNGGIFVKNCFPTTQRNSWAKDHVQICEVSGIGFEKEGSLCGETGQK
                     LWMEEWEYPPIGVYFANDPSGGHAMFALDYRECGKDGEPKVVFVEQESDFEIVELAPD
                     FETFIRSLRHEDEFIDEEI"
     gene            complement(1395..3602)
                     /gene="uvrD"
                     /locus_tag="ACFOCN_000633"
     CDS             complement(1395..3602)
                     /gene="uvrD"
                     /locus_tag="ACFOCN_000633"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HFC6969826.1"
                     /translation="MFPDQSAPNLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLT
                     TRIAWLLQTGQASVHSIMAVTFTNKAAKEMQTRLGAMIPVDVRAMWLGTFHGLCHRFL
                     RLHHRDAGLPSSFQILDGGDQLSLIKRLLKSLNIAEEIIAPRSLQGFINAQKESGLRA
                     SVLSAPDPHTSRMIECYAEYDKICQREGVVDFAELMLRSYEMLQSNEILRQHYQNRFN
                     HILVDEFQDTNKLQYAWLKLMAGGNAAVFAVGDDDQSIYRFRGANVGNMTALMEEFHI
                     DAPVKLEQNYRSVGNILAAANAVIENNDERLGKNLRTDAEAGDKIRYYSAFTDLEEAR
                     FILDETKALEREGWDLDEIAVLYRSNAQSRVIEQSLFRSGIPYKIYGGLRFYERQEIK
                     HALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAK
                     AAKIAAFVRLIEALRNQVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELV
                     NAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHA
                     AKGLEFNAVFLTGMEEGRFPSEMSLAERGGLEEERRLMYVAITRARKRLYITMAQQRM
                     LHGQTQFGIVSRFVEEIPPEVLHYLSIKKTAYDSYGNTRQTATFKDKIIDDYKQPQTY
                     AGFRIGQNVRHAKFGTGVIIDAADKGESARLTINFGKQGVKELDTKFAKLEEM"
     gene            3786..4433
                     /gene="pxpB"
                     /locus_tag="ACFOCN_000634"
     CDS             3786..4433
                     /gene="pxpB"
                     /locus_tag="ACFOCN_000634"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HFC6969827.1"
                     /translation="MRIEITPISESALVCRLNAPSELGKQQKLWAFAAALGQHDRIEE
                     VVVGMNNLTVFTRFDTDLATLADELQYVWEHTAVTDHQGKLVEIPVCYGGEYGPDLAE
                     VAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGS
                     VGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLNPPTLLAAGDQVRFVAERIEP"
     gene            4430..5359
                     /locus_tag="ACFOCN_000635"
     CDS             4430..5359
                     /locus_tag="ACFOCN_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HFC6969828.1"
                     /translation="MIHVSAVQAPAHIQDTGRYGHRRYGIGHAGAMDTVALAAGNILL
                     GNDEGTAAIEIALGGIMLVFERDTPFCLTGAVYQAELDGEPVYSYWRYTARKGQTLKM
                     VRAVQGMYGYVCVAGGFDVPEVMGSRSTDLKAGFGGHQGRMLQKGDYLPIGKGAQELS
                     KVGIAPIPFTDTVHLVPSSEYAAFSEKGRLNLERETWTLQSDSNRMGYRFDGQPLTLS
                     QPLEMLSHAVQAGTVQVPPGGKPIILLADAQTTGGYPKIATVAAADLGRLAQVRFGSK
                     VKFKIIGLKEATALRRKNQAYLNQIRRITHEAG"
     gene            5346..6083
                     /gene="pxpA"
                     /locus_tag="ACFOCN_000636"
     CDS             5346..6083
                     /gene="pxpA"
                     /locus_tag="ACFOCN_000636"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HFC6969829.1"
                     /translation="MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAA
                     LAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMA
                     YVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
                     FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGQVKAVDGSLVAVQADSICL
                     HGDGPHAVVFAEKIRQELLAAGIKVSA"
     gene            6212..7405
                     /locus_tag="ACFOCN_000637"
     CDS             6212..7405
                     /locus_tag="ACFOCN_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6969830.1"
                     /translation="MSDQKNRRNALIGAAFLMATSAIGPGFLTQTATFTQALAASFGF
                     VILLSILLDIGAQLNIWRIVAVSEKQAQDIANQVLPGAGYFLAVLIVMGGLAFNIGNV
                     GGAGLGLNLLTGLSPETGAVISGVIAIGVFLFKEAGKVMDKFAQVMGFVMIALTVYVA
                     WQANPPLADAAVHTFMPEKLDAMAIVTLVGGTVGGYITFAGAHRLLDAGIKGKSALPE
                     VSQSSVRAILIASIMRIVLFLAVLGVVSQGVQLNPDNPASTPFEYAAGYIGLLIFGVV
                     IWAASITSVIGAAYTSVSFFSGLSPSIERNKNKWIIAFIAVSTAVFSTIGKPAQVLVF
                     VGALNGLILPISLGLILIAAYKTKIVGDYKHPLWLTVSGVIVVGLMAVLSAITISKYI
                     GGLFG"
     gene            7513..8205
                     /locus_tag="ACFOCN_000638"
     CDS             7513..8205
                     /locus_tag="ACFOCN_000638"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6969831.1"
                     /translation="MKRFTYTLSDGLCIEIELKRSAKKNLILRPVNMQTVSINVPPFF
                     QDHALANWLAANETILRNTLAKTPVHPVSHPNLPEWIWYRGIKTKLDTHSQSHIRITS
                     SEILLPRKETAAQIDHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGV
                     CRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSW
                     LKAHGRELFVLG"
     gene            complement(8505..11195)
                     /gene="glnE"
                     /locus_tag="ACFOCN_000639"
     CDS             complement(8505..11195)
                     /gene="glnE"
                     /locus_tag="ACFOCN_000639"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HFC6969832.1"
                     /translation="MSDNRLDTARRHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQ
                     AFADWDKIRAEENEEELARQLRGLRRYVVSQIIVRDINRISDLNEVTRTITLFADFAV
                     NTALDFAYAYYRDMYGTPIGRDTKSPQHLSVVAMGKAGGYELNVSSDIDLIFIYPESG
                     DTDGRRERGNQEFFTKVGQKLIALLNDITADGQVFRVDMRLRPDGDSGALVLSETALE
                     QYLITQGREWERYAWCKGRVLTPYPNGIKSLVRPFVFRKYLDYGAYEAMRKLHRQIRS
                     EVGKKGMADNIKLGAGGIREVEFIAQIFQMIRGGQMRALQLKGTQETLEKLAESGIMP
                     SENVETLLAAYRFLRDVEHRLQYWDDRQTQTLPASPEQRQRLAESMGFDDYADFLNAL
                     NQHRNQVNRLFNEILSEPGEQTQSSGEWQWVWQEKPDEEGRQCRLKEHGFDAETIAAR
                     LDQIRNGHKYRRLSAHAQPRFDALVPLLVQAAAAQTNPTDTLMRLLDFLENISRRSAY
                     LAFLNEHPQTLAQLAQIMSQSSWVAAYLNKYPILLDELISAQLLDTAFDWDKLAAELS
                     DGIKACGGDTEAQMDTLRHFQHAQVFRLTVQDLAGLWTVESLSDQLSALADTVIAAAL
                     SCAWADMPKKHRDTPQFAIVGYGKLGGKELGYASDLDLVYLYDDPHPDAGDVYSRLAR
                     RLTNWLSAATGAGSLYETDLRLRPNGDAGFLAHSIAAFEKYQRENAWTWEHQSLTRAR
                     FICGTPEIQTAFDRIRTEILTAERDQTALSGEIIEMREKMFPTHPPADSNVKYARGGV
                     VDVEFIVQYLILAHARKYPQLLANYGNIALLNIAADCSLIDKNLAEQSRTAYRFYRRQ
                     QHNTKLRDAEKTEVSGELLAHYGNVRKLWREVFGEEAATA"
     gene            complement(11375..11710)
                     /locus_tag="ACFOCN_000640"
     CDS             complement(11375..11710)
                     /locus_tag="ACFOCN_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969833.1"
                     /translation="MTVDKEQVEKMIYSENKQSVIDGMLGMTFSSEEDEIPWISEKLT
                     ELSKHKDLDIARLSLTCFGHLARMHENIGDCDKVIALLLSKQGDPDFQGFAEDALDEI
                     SLFIFKKRP"
     gene            complement(11964..12437)
                     /locus_tag="ACFOCN_000641"
     CDS             complement(11964..12437)
                     /locus_tag="ACFOCN_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2247 family protein"
                     /protein_id="HFC6969834.1"
                     /translation="MNLDLTAQKVRLSWKDILWGYGNKYLGWADVAAYARKMTLSDHD
                     ERVFKLSLINKSNILELKPVLEDLASEMRDYSPKNWLYVLLSDVFHRKEEFEDPLGEV
                     EKIYADFDYPEEIESFVRYMPPKDGYIPSAHTYEENIARLYSHWEHYLNNGGGQG"
     gene            complement(12490..12771)
                     /locus_tag="ACFOCN_000642"
     CDS             complement(12490..12771)
                     /locus_tag="ACFOCN_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969835.1"
                     /translation="MENGQRNNRFPLEKRIFYLEHSGRYLMICALSDYSQNKHTVVMA
                     NFIYPDEKTDWRNLDDLFNELVLEELQASFMDWHPTVEEAISRHLEDFS"
     gene            complement(12858..13181)
                     /locus_tag="ACFOCN_000643"
     CDS             complement(12858..13181)
                     /locus_tag="ACFOCN_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969836.1"
                     /translation="MFKDELNEFIRLISDPESELDEWYLSDFKDEHIWEMQSYEAFSC
                     LREAVPYLFAYPRYGYELLEIISALKETSDTTELFYEPGIVPLLIDLYKEDSYLVNMV
                     KRIFK"
     gene            complement(13320..13499)
                     /locus_tag="ACFOCN_000644"
     CDS             complement(13320..13499)
                     /locus_tag="ACFOCN_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969837.1"
                     /translation="MPSERTFCRSDGIFISFSCLPPFENPLRAALFETKQTPAANRTI
                     LIRSQSKSGGKLLNI"
     gene            complement(13515..14522)
                     /locus_tag="ACFOCN_000645"
     CDS             complement(13515..14522)
                     /locus_tag="ACFOCN_000645"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HFC6969838.1"
                     /translation="MYPLARRILFALDAEKAHHFTLDALNMVYKLGLIPVTGNRTKPV
                     KLMGLDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPNPQPGNPQPRLFRVPE
                     YQGIINRMGFNNHGIDAMIQNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAY
                     AHASYITVNISSPNTKNLRALQGGDELSALLEALKNKQAQLASVHGKYVPLAVKIAPD
                     LDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVL
                     KLLADHIDGKLPIIGVGGIMEGRDAAEKIRLGATAVQVYSGLIYKGPALVKECLKALA
                     Q"
     gene            14754..14990
                     /gene="acpP"
                     /locus_tag="ACFOCN_000646"
     CDS             14754..14990
                     /gene="acpP"
                     /locus_tag="ACFOCN_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFC6969839.1"
                     /translation="MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELV
                     MALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG"
     gene            15146..16393
                     /gene="fabF"
                     /locus_tag="ACFOCN_000647"
     CDS             15146..16393
                     /gene="fabF"
                     /locus_tag="ACFOCN_000647"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HFC6969840.1"
                     /translation="MSQRRVVITGLGQVSPVGNTVAEAWDTLLAGKSGIGAITRFDAS
                     DINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRI
                     GVNIGSGIGGLPSIEVTGKAVIEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYG
                     MVSACTTGAHAIGNSARLIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPA
                     TASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIVGFGMSSDAYHITAPNE
                     EGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTVVSST
                     KSMTGHLLGAAGGVEAVYSILAIHDGKIPPTINIFEQDVEAGCDLDYCANEARDAEID
                     VAISNSFGFGGTNGTLVFKRFKG"
BASE COUNT         3728 a         4261 c         4419 g         4056 t
ORIGIN      
        1 aatattgctc aaaagaaact tgggatttga cactttcaaa cttattacga tttttttctt
       61 gggaattcga agattacaat ccaaacacat aagagcaatt tgggatgata agtctggagc
      121 aattgtaatc agagacccaa attcaaaaga tggtggaact gcatttagac caaccttagg
      181 caaaacttac tttgacaaac aaaaataaaa ttattatgaa tataatcaat tacacaggtg
      241 atgacattat tatttcttta acaagagaag agcttcaatt attgcgttcc cttgttattg
      301 aaatttatgc aggtgtttgc atagatgcag aagaatttga gattgtgtca ggaattcgca
      361 attcaaaatt ggtacaagag ctagaacaac aattaattga agcatatgat ttaatggata
      421 caaaaggata accgaattat atttgagata gctccaaact tgataagttc tgttaataat
      481 gtcaatgctg tcggagacag tttttctttg caaaggtctt ggatggcgcg ttccaccaaa
      541 ccgttttcct tacggattca agcgattatc cgttatttcg cccgttttcc cttgatgatt
      601 ccggtttttc aaccgccgtt ttatatttcc tcgtcaataa actcatcttc atgccgcaag
      661 ctgcggataa aggtttcaaa atcgggggca agttcgacga tttcaaaatc cgattcttgc
      721 tcgacaaaca ccactttcgg ctcgccgtct tttccacact cccgatagtc caaggcaaac
      781 atggcatgac cgcctgacgg gtcgttggca aaatacacgc cgatgggcgg atattcccat
      841 tcttccatcc aaagtttttg ccctgtttcg ccgcacaaac tcccttcttt ttcaaagccg
      901 atgcccgata cctcgcaaat ttgcacatga tctttcgccc acgaatttct ctgtgtggtc
      961 ggaaaacagt ttttgacaaa tattccgccg ttttgtaccg ccatcaattc aataaaactt
     1021 tgcggcaatt tatagcccag ttcactttct acggcagcca aaatttcagg ggtaaacggg
     1081 gcttctttgt agttttcatc tgcccaactg tcggattccc atacggagga caaatcaaaa
     1141 tctttaaaaa cttgggacat aatgttcttc cttattgatt ttcagctata aacaagggtt
     1201 aggtatctat acccggcttt taccgtccgt cattcccgcg caggcgggaa tctagaacgt
     1261 ggaatctaaa gaaacctttt atccgataag ttcccgtgcc gaaaggtctg gattcccgcc
     1321 tgcgcgggaa tgacggcgga ggtttgggca aaaattgttg ttcccgtttt cagacggcct
     1381 ctgccatctc ccttctacat ctcttccaat ttcgcaaact tggtgtccaa ctctttcacg
     1441 ccctgtttgc cgaaattgat ggtcagtcgg gcggattcgc ctttatctgc ggcatcgata
     1501 atcacgccgg tgccaaattt ggcgtggcgg acgttttgtc cgatgcggaa gcctgcgtag
     1561 gtttgcggct gtttgtagtc gtcgatgatt ttgtctttga acgtggcagt ttgacgcgtg
     1621 ttgccatagc tgtcgtaggc ggtttttttg atggacaggt agtgcaatac ttcgggcggg
     1681 atttcttcga cgaagcggga gacgatgccg aattgggttt gcccgtgcag cattctttgt
     1741 tgcgccatgg tgatgtagag gcgtttgcgg gcgcgggtga tggcgacgta catgaggcgg
     1801 cgttcttctt cgaggccgcc gcgctcggca aggctcattt cgctggggaa acggccttct
     1861 tccatgccgg tgaggaagac ggcgttaaat tccaagcctt tggcggcgtg gacggtcatg
     1921 agttggacgg ctttttcgcc cgcgcctgct tggttttcgc cggattcgag ggcggcattg
     1981 cttaggaagg cgaggatggg gaaggctggg tcgtctgaaa tgttttcagg caggatttcg
     2041 aagttgctgt cttcgggttt gaactcgatg gcggcattga cgagttcgtc aaggttgtcg
     2101 agacggtctt ggttgtcgcc tttttgggtg cggtagtgtt cggtcaggcc gctgtctttg
     2161 aggatgccga cgatgatttc ggacaggggc agttgtccga cttggttgcg cagtgcttca
     2221 atcaggcgga cgaaggcggc gattttggcg gctttcgcgc cggcgttgca ggctgcctgc
     2281 caaagggtga tgccttgttc gtttgaggcc gtctgaaggt tctcgacggt gcgtgcgccg
     2341 atgccgcgcg gtgggaagtt gatgacgcgc aaaagggcgt tgtcgtcgtc gggattgacg
     2401 gcgaggcgta ggtaggcgag cgcgtgtttg atttcttggc gttcgtaaaa gcgcaagccg
     2461 ccgtagattt tgtaggggat gccgctgcgg aacaggcttt gttcgataac gcgggattgg
     2521 gcgttgctac ggtagaggac ggcgatttcg tccaaatccc agccttcgcg ttcgagggct
     2581 ttggtttcgt ccaagatgaa ccgggcttct tcgaggtcgg taaaggcgga gtagtagcgg
     2641 attttgtcgc ctgcttcggc gtcggtgcgc aggtttttgc cgagtcgttc gtcgttgttt
     2701 tcaatcacgg cattggcggc ggcaaggatg ttgccgacgg agcggtagtt ttgttcgagt
     2761 ttgacgggcg cgtcgatgtg gaattcttcc atcagcgcgg tcatgttgcc gacgtttgcg
     2821 ccacggaaac ggtaaatgct ttggtcgtcg tcgccgacgg caaataccgc tgcgtttccg
     2881 cccgccatga gtttgagcca ggcgtattgc agtttgttgg tgtcttggaa ctcgtcgacg
     2941 agaatgtggt tgaagcggtt ttggtaatgc tggcgcagga tttcgttgct ttgcagcatt
     3001 tcgtagctgc ggagcatgag ttcggcaaaa tcgaccacgc cttcgcgttg gcagattttg
     3061 tcgtattcgg cgtagcattc aatcatgcgg cttgtgtgcg gatcgggcgc actcaagacg
     3121 gaagcgcgca aaccggattc tttttgcgcg ttgataaagc cttgcagcga acgcggcgcg
     3181 atgatttctt cggcgatgtt gaggcttttg agcaggcgtt tgatgaggga aagctggtcg
     3241 ccgccgtcga ggatttgaaa ggaagacggc aaaccggcat cgcggtggtg cagccgtaga
     3301 aagcggtggc agaggccgtg gaacgtgccg agccacatag cgcggacgtc gacgggaatc
     3361 atcgcgccga gtcgggtttg catttctttg gcggctttgt tggtaaacgt taccgccata
     3421 atgctgtgca cgcttgcctg accggtttgc aaaagccatg cgatacgcgt ggtcagcacg
     3481 cgcgttttgc cgctgcccgc gcctgccagc acaagggcgg attgcggcgg ccaggttacg
     3541 gcggaaagtt gttcagggtt caagccttgc agcaggttgg gggcggattg gtcgggaaac
     3601 atagagatgc cgtctgaaaa gtggaatgcg ctattttaat agaaacggtt taaggtcgtc
     3661 tgaaaaagtg cagcggcagg gcagcacttt tccaatcgac ggtttgatga tgcagcacag
     3721 aagatattga caaaccgccg cccctgcata tagattcatt aaaacataac caaaatgaac
     3781 aacaaatgag aatagagatc acaccaatca gcgaatccgc tttggtctgc cgactgaatg
     3841 caccttccga actgggcaaa cagcaaaagt tgtgggcgtt tgccgctgcg ctcgggcagc
     3901 acgacaggat tgaggaagtg gtggtcggca tgaacaatct gaccgtgttc acccgtttcg
     3961 ataccgattt ggcgacgctt gccgatgaat tgcaatatgt gtgggaacac accgccgtta
     4021 cagaccatca gggcaaactg gtggaaattc ccgtctgcta cggcggcgaa tacggcccgg
     4081 atttggcgga agtcgctgct ttccatcaga cggttatttc cgaaatcgtc cgccgccata
     4141 cggcgcaaac ttataccgta tttatgatgg gcttccagcc tggtttccct tatctgggcg
     4201 gcttgcccga agcattgcac acgccccgcc gtgccgtgcc gagaacgtcc gttcctgccg
     4261 gttcggtcgg tatcggcggc agtcagaccg gtgtgtatcc gttcgcttcg cccggcggct
     4321 ggcagattat cggcagaacc gaattaccct tgttccgagc cgatttgaat ccgccgaccc
     4381 tgctggcggc gggtgaccaa gtccgctttg ttgcagaaag gattgagcca tgattcacgt
     4441 ttcggcagtg caggcaccgg cgcatattca ggataccgga cgctacggac accggcgtta
     4501 cggcatcggt catgccggtg cgatggacac ggttgctttg gcggcgggta atattttatt
     4561 gggcaacgac gaaggcacgg ccgcaatcga aatcgctttg ggcgggataa tgctggtgtt
     4621 tgaacgggat acgccgtttt gtctcaccgg tgccgtgtat caggcggaat tggacggcga
     4681 accggtctat tcgtattggc gttataccgc ccgcaaaggg cagaccttga aaatggtgcg
     4741 tgccgtgcag ggcatgtacg gctatgtgtg cgtggcgggc ggatttgatg tgccggaagt
     4801 gatgggttcg agaagtaccg acctgaaagc cggtttcggc ggccatcagg gcagaatgct
     4861 gcaaaaaggc gattatctcc ccatcggcaa aggtgcgcag gaattgtcca aagtcggcat
     4921 tgccccgata ccgtttaccg ataccgtcca ccttgttcct tcgtcggaat atgccgcttt
     4981 cagtgaaaaa gggcgtctga atctggaacg ggaaacgtgg acgctgcaaa gcgatagcaa
     5041 ccgcatgggc taccgcttcg acggacagcc gctgaccctg tcgcaacctt tggaaatgct
     5101 gtcccacgct gttcaggcag gaaccgtgca ggtgccgccc ggcggcaaac cgattatcct
     5161 gctggccgat gcgcaaacca ccggcggtta tccgaaaatc gctaccgttg ccgccgccga
     5221 tttgggcagg ctggcacagg tgcgcttcgg cagcaaagtc aaattcaaaa taatcggctt
     5281 gaaagaagcc accgccctgc ggcgcaaaaa ccaagcctat ctgaaccaaa tacggagaat
     5341 cacccatgaa gcaggttgat ttaaacgccg atctcgccga aggctgcggc agcgacgaag
     5401 ccttgttgca gctgattact tcggccaaca tcgcctgcgc ccaacacgcc ggcagcattg
     5461 ccgatattcg ggcggcattg gcgtatgccc aacaaaacgg cgtgcgcatc ggagcacacc
     5521 ccggctatcc cgatcgggaa aacttcggcc gtaccgaaat gaatctgtcc gaagccgatt
     5581 tgcgggcgtg tctgaattac cagttgggcg cattgcaggc cttgtgccgt gatcagggtt
     5641 tggaaatggc ttatgtcaaa ccgcacggcg caatgtacaa tcaagcggcg aaaaaccgtg
     5701 cgctggcgga taccgttgcc cgaattgtgg cggatttcga cccgaaattg aaattgatgg
     5761 cactttccgg cagcctgctc ttggaagccg gaaaagccgc aggcttgggt gtgatttccg
     5821 aagtattcgc cgaccgccgc tatatgcccg acggtacgct ggttccccgc agccgccccg
     5881 atgcgcaggt ggacagcgac gaagaagcca tcgcccaagt attgcagatg gtgcgggacg
     5941 ggcaggtcaa agcagtggac ggcagcctgg ttgccgtgca agccgacagc atctgtctgc
     6001 acggagacgg gccgcacgcc gtggtgtttg ccgaaaaaat ccggcaggaa ctactggcgg
     6061 caggcatcaa agtttctgct tgaaaaacag ttcataggcc gtctgaaaac cgcaggtttc
     6121 gccaaaacga gcaaagcgag tttctgcgta gctaaaaccg caggtttcgc ccaaacacag
     6181 caacaaccaa ttttatagag gataagcgat tatgtctgat caaaaaaacc gcagaaatgc
     6241 cttaatcggc gctgcattcc tgatggcgac ttccgccatc ggcccgggct ttctgaccca
     6301 aaccgccacc ttcacccaag cactggcggc aagtttcggc tttgtgattc tgctctcgat
     6361 tctgctcgac atcggggcgc agctcaatat ttggcggatt gtcgccgttt ccgaaaaaca
     6421 ggcgcaggat attgccaatc aggtcttgcc cggcgcaggc tatttcttgg ctgtgctgat
     6481 tgtgatgggc ggtttggcgt tcaatattgg caacgtcggc ggcgcaggct tgggtctgaa
     6541 cctgctgacc ggactgtcac cggaaaccgg tgccgtgatc agcggcgtga ttgccatcgg
     6601 tgtgtttctg tttaaagaag caggcaaagt gatggacaaa ttcgcccaag tgatgggttt
     6661 cgtaatgatt gcgctgacgg tttatgtggc atggcaggcg aatccgccgc tggcagatgc
     6721 cgccgtgcat acctttatgc cggaaaaact cgatgcaatg gcgattgtta cactggtggg
     6781 cggcacggtc ggcggctaca tcaccttcgc cggtgcgcac cgtctgctgg acgcaggtat
     6841 caaaggcaaa tcggcgttgc cggaagtgag ccaaagctcg gtgcgggcga tcctgattgc
     6901 ctcgattatg cggattgtat tgtttttggc ggttttgggc gtggtcagcc aaggcgtaca
     6961 gctcaatccc gacaaccctg cttccacacc gtttgaatat gcggcgggat acatcggcct
     7021 gctgattttc ggcgtggtga tttgggcggc ttcgattact tcggtgattg gtgcggctta
     7081 tacttcggtg tcgttcttct ccggtctcag cccgtctatc gaacgcaata aaaacaaatg
     7141 gattattgcc tttatcgccg tgtccaccgc cgtattttcc accatcggca aaccggcgca
     7201 ggtgctggtg ttcgtaggcg cattaaacgg cctgatttta ccgatttccc tcggtctgat
     7261 tctgattgcc gcctacaaaa ccaaaattgt cggcgactac aaacacccgc tgtggctcac
     7321 cgtttccggc gtgattgtgg tcggtttgat ggcagtactc agcgccatca ccatcagcaa
     7381 atatatcggc ggcttgttcg gctgaacctt gtagcgcaga tgtttgattt tgtatattat
     7441 ccgaagtttg ccgcctgata tggaaaattc ctgtttcaga cgatgtatcc ggtctgaaac
     7501 ctattcacaa ctatgaaacg cttcacctat actctttccg acggtttgtg catcgaaatc
     7561 gaactcaaac gcagtgccaa gaaaaatctg attctgcgcc ccgtcaatat gcagacggtc
     7621 agcatcaacg tcccaccctt ttttcaagac cacgcgttag caaactggct ggcggcaaac
     7681 gaaacgattt tgcggaacac gcttgccaaa acgcccgtgc atcctgtttc ccacccaaac
     7741 ttacccgagt ggatttggta tcggggaata aagaccaagc tggataccca cagccaaagc
     7801 catatccgta tcacgtcgtc tgaaatcctg cttccccgaa aagaaaccgc cgcacaaatc
     7861 gaccacctgc gccgcctgtt gaacgaacgc gcccgcgaat acctgctgcc ccgccttgaa
     7921 aaacacgcag ccgaaacagg actgacgccc accgccacag acctgagcaa cgccaaaacc
     7981 ttttggggcg tatgccgccc gcacaccggc atccgcctca actggcggct gatcggcacg
     8041 cccgaatacg tcgccgacta tgtctgcatc cacgaactct gccacctccg ccaccccgac
     8101 cacagtccgc gcttttggca tttggtgaac acgctgacgc cgcataccga caatgctaaa
     8161 agttggctga aggcgcacgg gcgggaattg tttgtgctgg ggtaaaggct aaccgtagcg
     8221 tgggcttcgc ccgcgagaat ccaccccctc ccgtacggag ggagagggtt ggagagaggg
     8281 tggctcttgt cccttgttct gtatatttgc aagccaccct atcctagcct tcccccgttg
     8341 gataagggaa agggatcaag ctgctgtaac tgaaagagga atccggtttt tgggtttcag
     8401 ccattcccga taaatcgctt tagctctgcc gcaaccttaa aacggcacgg tacgaaaata
     8461 ccgtctgaaa cccagattgt caggcttcag acggcatttt ttgttcaggc ggttgccgct
     8521 tcttcgccga acacttcccg ccacaatttc ctgacattgc cgtaatgtgc cagcaattcg
     8581 ccgcttactt cggttttttc tgcgtcgcgc agtttggtgt tgtgttgctg ccggcggtag
     8641 aagcggtagg cggtgcggct ttgttcggcg aggtttttgt cgataaggct gcagtcggcg
     8701 gcgatattca agagggcgat gttgccgtag ttggcgagaa gttgcggata ttttcgggca
     8761 tgggcaagga tgaggtattg gacgataaat tcgacgtcga ccacgccgcc gcgtgcgtat
     8821 ttgacgttgc tgtcggcagg cggatgggtg gggaacattt tttcgcgcat ttcgatgatt
     8881 tcgcctgaca aggcggtttg gtcgcgttcg gcggtgagga tttcggtgcg gatgcggtcg
     8941 aaggccgtct gaatttcggg tgtgccgcag atgaagcggg cgcgggtaag ggattggtgt
     9001 tcccacgtcc aggcgttttc gcgctggtat ttttcaaagg cggcgatgct gtgggcgagg
     9061 aaaccggcgt cgccattagg gcgcaggcgc aggtcggttt cgtagaggct gcctgcgccg
     9121 gtggcggcgg aaagccagtt ggtcaggcgg cgggcaaggc ggctgtacac gtcgcctgca
     9181 tcgggatgcg ggtcgtcata aagatagacc aagtcgaggt cggaggcgta gccgagttct
     9241 ttgccgccaa gtttgccgta gccgacgatg gcgaattgcg gtgtgtcgcg gtgttttttg
     9301 ggcatatccg cccacgcgca cgaaagggcg gcggcaatga cggtgtcggc aagggcggag
     9361 agttggtcgg agagggattc taccgtccac aatccggcga ggtcttggac ggtgaggcgg
     9421 aagacttggg cgtgttggaa atggcgcagg gtgtccattt gcgcttcggt gtcgccgccg
     9481 caggctttga tgccgtctga aagttcggcg gcgagtttgt cccaatcaaa cgccgtatct
     9541 aataattgcg cactgatgag ttcgtccaac aaaatcggat atttgttcag atacgccgcc
     9601 acccatgagc tttggctcat aatctgagcg agttgcgcca gggtttgcgg atgctcgttg
     9661 aggaaggcga gataggcgga acggcggctg atattttcga ggaaatccaa cagccgcatc
     9721 aatgtatcgg tcgggttggt ttgcgctgcc gccgcctgta ccagcaacgg cacaagcgcg
     9781 tcgaaacgcg gctgggcgtg ggcggaaagg cggcggtatt tatgcccgtt gcggatttgg
     9841 tcgagccgcg cggcgatggt ttcggcatcg aacccgtgtt ccttcagacg gcattgccgc
     9901 ccttcttcat cgggcttctc ctgccaaacc cactgccatt cgccgctgct ttgcgtttgt
     9961 tctccgggtt cgctcaaaat ttcgttgaac aaccggttga cttggtttcg atgttgattt
    10021 aaagcgttca aaaaatcggc gtaatcatca aatcccatac tttcggcaag ccgttgccgc
    10081 tgttcgggcg aagccggcag ggtttgggtt tgccggtcgt cccaatattg caaacgatgt
    10141 tcgacatcgc gcaaaaagcg gtaggcggcg agcagggttt cgacgttttc agacggcata
    10201 atgcccgatt cggcgagttt ttccagcgtt tcctgcgtgc ctttcagttg cagcgcgcgc
    10261 atttgtccgc cgcgtatcat ctggaaaatc tgggcgataa attcgacttc gcggatgccg
    10321 cccgcgccga gtttgatgtt gtccgccatc ccttttttgc cgacttcgct gcggatttgg
    10381 cggtgcagct tacgcatcgc ctcatacgcg ccgtaatcca gatattttcg gaacacgaag
    10441 gggcgcacca gcgatttgat gccgttcgga tacggcgtaa gcacgcggcc tttgcaccac
    10501 gcataacgtt cccattcgcg cccctgcgta atcaggtatt gctccagcgc ggtttcgctc
    10561 aataccagcg cgcccgaatc gccgtccggc cgcagccgca tatcgacgcg gaacacctgc
    10621 ccgtcggcgg taatgtcatt cagcaacgca atcagtttct gcccgacttt ggtgaaaaat
    10681 tcctgattgc cgcgttcgcg cctaccgtcg gtatcgcccg attcgggata gatgaaaatc
    10741 aaatcgatgt cggaagacac gttcaactca tagccgcccg ccttgcccat cgccaccaca
    10801 ctcaaatgct gcggcgattt cgtatcacgc ccgatcggcg tgccgtacat atcccgataa
    10861 taggcgtagg caaaatccag cgcggtattg acggcaaaat cggcaaacag cgtaatcgtg
    10921 cgggttactt cgttcaaatc gctgatgcgg ttgatatcgc gcacgataat ctgcgacacc
    10981 acataacggc gcaacccgcg caactgccgc gccaattctt cctcgttttc ttccgcacgg
    11041 attttgtccc agtcggcaaa ggcttggaaa tccgcttcgg tcaaaacctt gtccaacatg
    11101 ggcaggaaaa tttcaggctt gagtttgccg ttgtcgagct ggcgggcaag gaacagggaa
    11161 tggcggcggg cagtgtcgag gcggttgtcg gacatttcgg attccgtttg aaaaaatggc
    11221 aggaagatga tggcggattc acttcaaatc aggacagggc gaggggatgc cgtactggtt
    11281 taaagtcaag ccactatatc atagcaacct tcgatgtcgt ctgaaagccg gataacgctt
    11341 cagacggcat cggattgaca ggtttaatcc gcgcttacgg acgcttttta aatataaata
    11401 aagaaatctc gtctaacgca tcttcggcaa aaccttgaaa atccggatca ccttgttttg
    11461 agagcaataa agcaatcact ttatcgcaat cgccgatatt ttcatgcatc ctggcgagat
    11521 gtccgaaaca ggttaatgac aatctggcaa tatccaagtc tttatgtttc gacaactccg
    11581 tcaacttctc ggaaatccag gggatttcat cctcctccga gctgaaggtc ataccgagca
    11641 taccgtcaat aacactctgt ttattttcag aataaatcat cttttctact tgttccttat
    11701 caaccgtcat tttttaattt ttccttttaa attaaccaat cctgctttct ttaaagcatt
    11761 tttgccgggc ggcaggattg ttatcaaaca tttgcacccg gtccggcaaa acgatttcct
    11821 tatcggttta tcggcaacga tgcgggcggt tcgggttttg ccgcttccgg aatgcagccc
    11881 gcccccgctt tcaaatcttc cgctctaatc cgtttgccgt ctgaaggccg gataatgctt
    11941 cagacggcat cggattgccg gttttaaccc tgccctccgc cgttgttcaa atagtgttcc
    12001 cagtgagaat ataaccgggc aatattttct tcataggtgt gggcagaagg aatataaccg
    12061 tctttgggcg gcatatacct gacaaatgat tctatttctt ccggataatc aaaatctgca
    12121 taaatttttt caacttcccc caaaggatcc tcaaattctt cttttctatg gaatacatcg
    12181 cttaagagga cgtacagcca atttttaggg gaataatccc tcatttccga agccaaatct
    12241 tccagaacag gctttaattc aagaatattg gatttgttga ttaaagatag tttgaacaca
    12301 cgttcatcat gatctgaaag cgtcattttt cgggcataag ctgccacatc agcccaaccc
    12361 aagtatttat tcccataccc ccacagaata tccttccaag aaagacggac tttttgcgcg
    12421 gttaaatcaa ggttcatttt ttactccgat tgcctgcccc gtcattccgc cccttccgat
    12481 tgacgcctgt tacgaaaagt cttccaaatg acggctgatt gcctcttcaa cagtcggatg
    12541 ccaatccata aatgaagcct gcaattcctc taaaaccaac tcattgaata aatcatccaa
    12601 attccgccaa tccgtttttt catccggata gatgaaattt gccataacga cagtatgttt
    12661 gttttgggaa taatccgata aggcgcaaat catcagatac cgccccgaat gctccagata
    12721 aaaaattcgt ttttccaaag gaaaccggtt attccgttgc ccgttttcca tttttcatcc
    12781 tttttaacgt atcggcttcc gcgtccttca aattgagtta cctgccttcc gccaagcaaa
    12841 cgcccgcgcc cctttcatca tttgaatatc cgtttgacca tatttaccag ataactatct
    12901 tctttatata aatcaatcag caaaggcacg atacccggct cataaaataa ttctgtcgta
    12961 tcagatgttt cttttaacgc ggaaattatc tccaacagtt catacccgta tcggggataa
    13021 gcaaacaaat aggggactgc ttcccgcaaa catgaaaatg cttcgtaact ttgcatttcc
    13081 catatatgtt catctttaaa atcactcaaa taccattcat ccaattcact ttccggatcg
    13141 gatatcaatc ggataaattc atttagttcg tccttaaaca tatcaaatcc ttaaatataa
    13201 aatcttttga ttatccgccg tatccttatt ttccacatca tgaatttcaa cgccgttcat
    13261 attttgcgtt ttctcaaacc gtccaccacg gcataaaatt attttttcat atcaattatt
    13321 tatatgttta acaacttacc gccggacttg ctttggctgc gtatcaagat tgtccggttc
    13381 gcggcgggcg tttgctttgt ttcaaacagg gcggcgcgta agggattttc aaagggcggc
    13441 aggcaggaaa aggaaataaa aatgccgtct gaacggcaaa acgtgcgttc agacggcatt
    13501 ttgtgcggga cgcgtcattg cgccaaagcc ttcaaacatt ctttgaccaa tgccggacct
    13561 ttgtatatca atccgctgta cacctggacg gcagttgcgc ccaagcggat tttctctgcc
    13621 gcgtccctgc cttccataat gccgcctacg ccgataatcg gcagcttgcc gtcgatgtgg
    13681 tctgccaaca gcttcaacac ccgattactt ttttcatgaa cgggcagccc gctcaaaccg
    13741 ccctgctcgc ctgcgagcgg atggctgccg agacttgatt tgtcgatggt ggtattggta
    13801 gcgatgatgc cgtccatttc gacggatttg acaacgtggg cgatgtcttc gatttgtgct
    13861 tcatccaaat cgggggcgat tttgacggcg agcgggacgt atttcccgtg tacagaggca
    13921 agctgtgcct gtttgttttt caaagcctca agcaatgcgc tcaactcgtc gccaccttgc
    13981 agcgcgcgga ggtttttagt gttgggcgag gaaatattga cggtaatgta acttgcgtgt
    14041 gcgtaggctt tttcgaggca gattaaataa tcatcggcag cgttttcaat cggtgttaca
    14101 gcgtttttgc cgatgttgat gcccaatacg ccgctgaatt tacttttttc gatgttttga
    14161 atcatggcat cgatgccgtg gttgttgaag cccatgcggt tgatgatgcc ttgatattcg
    14221 ggaacgcgga agaggcgcgg ctgcgggttg ccgggctgcg ggttgggcgt taccgtgccg
    14281 atttcgatga aaccgaagcc gagcgcgccc aatgcgtcta tatattcgcc gtttttatcg
    14341 agtccggcgg caagcccgac agggttgggc aaatccaaac ccatcagttt tacaggtttg
    14401 gtacggttgc cggttacggg aatcagaccc aatttataaa ccatgttgag cgcgtcgagc
    14461 gtgaagtggt gggctttctc ggcatcgagt gcaaacagga tgcggcgggc aagtggatac
    14521 atgacagggc tttctgcttc agatggaaat gccgtcattt taaccgaaat cccgtcaaac
    14581 atacggcaca caggtcaaac ttgaacgaca aaacccgccg cacccaaaaa tgtacaaatc
    14641 ggcaaatatt gatataatag tcattagata gaaaactcta ttaaaagtcg gtacaatacc
    14701 accgatttat ttcccttaaa caacctgccg caaggcataa aggaacgact gatatgtcaa
    14761 acatcgaaca acaagttaaa aaaattgttg ctgaacaact gggcgtaaac gaagccgacg
    14821 tgaaaaacga atcttctttc caagacgact tgggcgcgga ttctttggac accgtggagc
    14881 tggttatggc tttggaagaa gcattcggct gcgaaatccc cgacgaagat gccgaaaaaa
    14941 tcaccaccgt ccaactggct atcgactaca tcaatgccca caacggctaa ccggtcgtcg
    15001 cccgacacaa cagcctctgc tgcaccgcgc aatagaggct tttcccttat atggcaaact
    15061 gtttgaaccc ctgccgcaaa ttacagacgg catctgcacg acagccgcat atgcccccat
    15121 tccgacaacc aacagcgagg ttatcatgag tcagagaaga gtagtcatta caggcttagg
    15181 tcaggtttcc cctgtcggca acactgtcgc agaggcttgg gacaccctgc tcgccggcaa
    15241 aagcggcatc ggcgcgatta cccgctttga cgcatccgac atcaacagcc gtgtcgccgg
    15301 cgaagtgcgc ggtttcgaca tcggacaata catcagcgcg aaagaagcgc gccggatgga
    15361 cgtattcatc cactacggca ttgccgccgc attgcaggca atcgccgatt cgggcttgga
    15421 cgatgtggaa aacctcgaca aagaccgcat cggcgtgaac atcggttccg gcatcggcgg
    15481 actgcccagc atcgaggtca ccggcaaagc cgtaatcgaa ggcggcgcgc gcaaaatcaa
    15541 ccctttcttt atccccggtt cgctgatcaa cctgatttcc ggacacgtta ccatcctcaa
    15601 aggctaccgc ggcccgagct acgggatggt ttccgcctgt accaccggcg cgcacgccat
    15661 cggcaattcc gcccgactga tcaaatacgg cgacgcggac ataatggttg ccggcggcgc
    15721 ggaaggcgca atcagcactt tgggcgtggg cggttttgcc gcgatgaaag ccctctccac
    15781 ccgcaacgac gaccccgcca ccgcttcccg tccgtgggac aaaggccgcg acggcttcgt
    15841 tatcggcgaa ggcgcgggca tattggtgtt ggaagaattg gaacacgcca aaaaacgcgg
    15901 cgcgaaaatc tacgccgaaa tcgtcggctt cggcatgagt tccgatgctt accatatcac
    15961 cgcgccgaac gaagaaggcc ccgcccttgc cgttacccgc gcgctgaaag atgccggcat
    16021 caatcccgaa gacgtggatt acgtcaacgc gcacggcacg tccaccccct tgggcgatgc
    16081 caacgaaacc aaagccctca aacgcgcgtt cggcgaacac gcctacaaaa ccgtcgtcag
    16141 ctcgaccaaa tccatgaccg gccacctgct cggcgcggcg ggcggcgtgg aggccgtgta
    16201 cagcattttg gcgatacacg acggcaaaat cccgccgacc atcaacattt ttgaacaaga
    16261 cgttgaagcc ggctgcgatt tggactactg cgccaacgaa gcgcgcgacg cggaaatcga
    16321 cgttgccatt tccaactcct tcggcttcgg cggcaccaac ggcacgctgg tcttcaaacg
    16381 cttcaaaggc tgattccgca aagccgccgc cgacatcgaa atgccgtctg aaaccgtttc
    16441 agacggcatt tttatagtga ttaa
//
LOCUS       DAXIFD010000027        16068 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.027, whole genome shotgun sequence.
ACCESSION   DAXIFD010000027 DAXIFD010000000
VERSION     DAXIFD010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16068
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.027"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(308..730)
                     /locus_tag="ACFOCN_000648"
     CDS             complement(308..730)
                     /locus_tag="ACFOCN_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HFC6969841.1"
                     /translation="MQVTSKWIDGMCFVGTTESGHSVVMEGSAAEGAAKRGPSPLEML
                     LLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKE
                     SAIERAVQMSAEKYCSASIMLGKAAKITHSFEIAGADK"
     gene            complement(848..1519)
                     /locus_tag="ACFOCN_000649"
     CDS             complement(848..1519)
                     /locus_tag="ACFOCN_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HFC6969842.1"
                     /translation="MMKTFKNIFSAAILSAALPCAYAAGLPQSAVLHYSGSYGIPATM
                     TFERSGNAYKIVSTIKVPLYNIRFESGGTVVGNTLHPTYYRDIRRGKLYAEAKFADGS
                     VTYGKAGESKTEQSPKAMDLFTLAWQLAANDAKLPPGLKITNGKKLYSVGGLNKAGTG
                     KYSIGGVETEVVKYRVRRGDDTVMYFFAPSLNNIPAQIGYTDDGKTYTLKLKSVQING
                     QSAKP"
     gene            complement(1535..2161)
                     /gene="purN"
                     /locus_tag="ACFOCN_000650"
     CDS             complement(1535..2161)
                     /gene="purN"
                     /locus_tag="ACFOCN_000650"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HFC6969843.1"
                     /translation="MKNIVILISGRGSNMQAIVNAAIPNVRIAAVLSNSETAAGLQWA
                     AERGIPTDSLHHKNFESRLAFDTAMMEKIDAYQPDLVVLAGFMRILTPEFCAHYEGRL
                     MNIHPSILPSFTGLHTHERALEAGCRVAGCTIHFVTAELDCGPIVSQGVVPILDGDTA
                     DDVAARVLAVEHKLYPKAVADFAAGRLIIEGNRVRNSENADAARFLTA"
     gene            complement(2268..3074)
                     /locus_tag="ACFOCN_000651"
     CDS             complement(2268..3074)
                     /locus_tag="ACFOCN_000651"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6969844.1"
                     /translation="MNTIFKISALTLSAALALSACGKKEAASEPAAASAAQGDTSSIG
                     STMQQASYAMGVDIGRSLKQMKEQGAEIDLKVFTEAMQAVYDGKEIKMTEEQAQEVMM
                     KFLQEQQAKAVEKHKADAKANKEKGEAFLKENAAKDGVKTTASGLQYKITKQGEGKQP
                     SKDDIVTVEYEGRLIDGTVFDSSKANGGPVTFPLSQVIPGWTEGVQLLKEGGEATFYI
                     PSNLAYREQGAGDKIGPNATLVFDVKLVKIGAPENAPAKQPAQVDIKKVN"
     gene            complement(3333..3773)
                     /locus_tag="ACFOCN_000652"
     CDS             complement(3333..3773)
                     /locus_tag="ACFOCN_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HFC6969845.1"
                     /translation="MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGRLQEL
                     DKMLWQYEAESFIPHEIWEMEEAMPSETSVLLACGGNPPRIPEGMTVLNLSDGFWNTA
                     PVLPARVLEIVGNSLEDLADARERFTAYRRSGFAIEHHGMEGKA"
     gene            complement(3836..5242)
                     /locus_tag="ACFOCN_000653"
     CDS             complement(3836..5242)
                     /locus_tag="ACFOCN_000653"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HFC6969846.1"
                     /translation="MEFSTKTEILQEQQAGAQLFVCTEEAQLNHPTALALLSSLEEGQ
                     NFADTKIPTGNGLQAVAVCCLKSTGRAALNKAAAEAAKWAQNQETVNVDIHAFDEAQA
                     AAVAEAFAIAFGNAAYRFDRYKKEAKPAKFETAVFHSAHEAVVKEALRVAEAQVYGQS
                     LCRDLGNAAPNECTPEFLARTAKAEAEKLGAHAKIIEKDYIKENMGSFWSVAKGSVED
                     PYLVELSYFGAADKEAAPVVLVGKGITFDTGGISLKPGLNMDEMKFDMCGAATVISTF
                     CAAVKLQLPINLIAVVATCENMPSGAANKPGDVVKSMKGLTIEVLNTDAEGRLILCDA
                     LTYAEQFKPKAVIDVATLTGACIVALGHDVSGVMGNNQDLVDSLLAASYNVDDKAWQL
                     PLFETYKDQLKSNFADIPNIGTPGAGTITAATFLSYFTEGYPWAHLDIAGTAWKSGAE
                     KGATGRPVPLLLNYLRNL"
     gene            5412..6527
                     /gene="lptF"
                     /locus_tag="ACFOCN_000654"
     CDS             5412..6527
                     /gene="lptF"
                     /locus_tag="ACFOCN_000654"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HFC6969847.1"
                     /translation="MIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVA
                     IDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPV
                     MQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY
                     FVETFDTESGIMKNLFLREQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPG
                     RADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVS
                     VLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLP
                     MHIIMFVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK"
     gene            6524..7594
                     /gene="lptG"
                     /locus_tag="ACFOCN_000655"
     CDS             6524..7594
                     /gene="lptG"
                     /locus_tag="ACFOCN_000655"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HFC6969848.1"
                     /translation="MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSY
                     GIWEMLGYTALKMPARAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLI
                     LSQFGFIFAIATVALGEWVAPTLSQKAENIKAAAINGKISTGNTGIWLKEKNSIINVR
                     EMLPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSI
                     AAEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNSQNTRIYAIAWWRKLVYP
                     AAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLA
                     GALPTIAFALLAVWLIRKQEKR"
     gene            7905..10490
                     /gene="acnB"
                     /locus_tag="ACFOCN_000656"
     CDS             7905..10490
                     /gene="acnB"
                     /locus_tag="ACFOCN_000656"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HFC6969849.1"
                     /translation="MLEAYRKAAAERAALGIPALPLNAQQTADLVELLKSPPAGEGEF
                     LVELLAHRVPPGVDDAAKVKASFLAAVAEGSASSPLISPEYATELLGTMLGGYNIHTL
                     IELLDDDKLAPIAAKGLKHTLLMFDSFHDVQEKAEKGNKYAQEVLQSWADAEWFTSRA
                     KVPEKITVTVFKVDGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRDGITPDKPGEVG
                     PIKLLEELKAKGHPVAYVGDVVGTGSSRKSATNSVIWHTGEDIPFVPNKRFGGVCLGG
                     KIAPIFFNTQEDSGALPIEVDVSALKMGDVVDILPYEGKIVKNGETVAEFELKSQVLL
                     DEVQAGGRINLIIGRGLTAKAREALKLPASTAFRLPQAPAESKAGFTLAQKMVGRACG
                     LPEGQGVRPGTYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAAYP
                     KPVDVKTHKELPAFISTRGGVSLRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIGIS
                     FPAGSGLVAFAAATGVMPLDMPESVLVRFSGKLQPGVTLRDLVNAIPLYAIKQGLLTV
                     AKAGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTVKLNKEPIIEYMKSN
                     VVLMKNMIADGYQDPRTLERRIKAMEKWLANPELLEADKDAEYAAVIEINMDDIKEPI
                     IACPNDPDDVCFMSERSGTKIDEVFIGSCMTNIGHFRAASKLLEGKADTPVRLWIAPP
                     TKMDAKQLSDEGHYGVLGRAGARMEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLG
                     KNTFVYLGSAELAAICSKLGKIPTVEEYQANIGIINEQGDKIYRYMNFNEIDSYNEVA
                     ETVNV"
     gene            10632..11627
                     /locus_tag="ACFOCN_000657"
     CDS             10632..11627
                     /locus_tag="ACFOCN_000657"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006591 - ornithine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HFC6969850.1"
                     /translation="MNLKNRHFLKLLDFTPEEITAYLDLAAELKAAKKAGREIQRMKG
                     KNIALIFEKTSTRTRCAFEVAARDQGAGVTYLEPSASQIGHKESIKDTARVLGRMYDG
                     IEYRGFAQETVEELTKYAGVPVFNGLTNEFHPTQMLADALTMREHSGKPLNQTAFAYV
                     GDARYNMGNSLLILGAKLGMDVRIGAPQSLWPSEGIIAAAHAAAKETGAKITLTENAH
                     EAVKNVDFIHTDVWVSMGEPKEVWQERIDLLKDYRVTPELMAASGNPQVKFMHCLPAF
                     HNRETKVGEWIYETFGLNGVEVTEEVFESPASIVFDQAENRMHTIKAVMVAALGD"
     gene            complement(11851..12864)
                     /gene="ilvC"
                     /locus_tag="ACFOCN_000658"
     CDS             complement(11851..12864)
                     /gene="ilvC"
                     /locus_tag="ACFOCN_000658"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HFC6969851.1"
                     /translation="MQVYYDKDADLSLIKGKTVAIIGYGSQGHAHAANLKDSGVNVVI
                     GLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVYHAEVTANLKEGATL
                     AFAHGFNVHYNQIVPRADLDVIMVAPKGPGHTVRSEYKRGGGVPSLIAVYQDNSGKAK
                     DIALSYAAANGGTKGGVIETTFREETETDLFGEQAVLCGGVVELIKAGFETLTEAGYA
                     PEMAYFECLHEMKLIVDLIFEGGIANMNYSISNNAEYGEYVTGPEVVNASSKEAMRNA
                     LKRIQTGEYAKMFIQEGNVNYASMTARRRLNADHQVEKVGAQLRAMMPWITANKLVDQ
                     DKN"
     gene            complement(12944..13237)
                     /locus_tag="ACFOCN_000659"
     CDS             complement(12944..13237)
                     /locus_tag="ACFOCN_000659"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HFC6969852.1"
                     /translation="MSNIKIVALVTVKPEYTETLVAQFKELVKASRAEEGNISYDLHQ
                     EIGKPNRFVFVENWKSQAAIDEHNASAHFQAFVQSVDGKTEALEIVLMNEVAA"
     gene            complement(13304..13795)
                     /gene="ilvN"
                     /locus_tag="ACFOCN_000660"
     CDS             complement(13304..13795)
                     /gene="ilvN"
                     /locus_tag="ACFOCN_000660"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HFC6969853.1"
                     /translation="MRHILSVLIENESGAMSRVVGLFSARDYNIDSLAVAPTEDKTLS
                     RMTIVTHGDEQVIEQITKQLNKLIEVIKVVDLNESRFVERELMLVKVRAAGKDRDEFL
                     RLTEIYRGSIIDVTDRSYTIEITGSTDKLDSFLETVGRAQILETVRTGAAGIGRGERI
                     LKI"
     gene            complement(13806..15533)
                     /gene="ilvB"
                     /locus_tag="ACFOCN_000661"
     CDS             complement(13806..15533)
                     /gene="ilvB"
                     /locus_tag="ACFOCN_000661"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HFC6969854.1"
                     /translation="MQLSGAQIIVQSLKAEGVEYVFGYPGGAVIEIYDALFQLNKFKH
                     ILTRHEQAAVHAADAYARVSGKVGVALVTSGPGVTNALTGIATAYTDSIPMVVISGQV
                     GNSLIGTDAFQEVDTVGITRPCVKHNFLVTDINELAETIKKAFQIAASGRPGPVVVDV
                     PKDVTQAMAKFSYPQEDIFIRSYQPVVQGHIGQIKKAVQMLASAKRPVVYFGGGVVLG
                     NASEELTRFVRMTGAPCTGTLMGLGAYPSGDRQFLGMLGMHGTYEANLAMQNADVVLA
                     VGARFDDRVVSVPSKFFEKAKKVIHIDVDPSSIAKRVKVDIPIVGDVKNVLSEMVALW
                     QKQEFMPSEDALGKWWKTIEEWRSQDCLWFDNGSEIIKPQYVIQKLAEITGNSAIITS
                     DVGQHQMFAAQYYPFERPRQWLNSGGLGTMGVGLPYAIGAKLAAPDQDVFCITGDGSI
                     QMNIQELSTCFQYRIPVNVITLNNGYLGMVRQWQEIYYGGRESETYFDSLPDFVKLAE
                     AYGHIGIRVDKKSDVEGALLEALNQKDRLVFIDFLTDQKQNVMPMVGNGKGLDEMVLP
                     PHMRADEKA"
BASE COUNT         3777 a         4366 c         4067 g         3858 t
ORIGIN      
        1 aataaattaa tatatggctt aaaataacgg gatgcccgcc ttccgcccgc ccgcagaagc
       61 aggcgggtat cattttaaaa cgcggcattt aaaatttgac cgaaaattgt tgacaatccg
      121 gaatcaagtc tgcacaatac cccgacaagt ccaagtatta taaaggctga ataaagagga
      181 aacagcaggc agatatattc gggaggtgca gtccgaatat atctgctttt ttatgcgcct
      241 ccggattgcc tgccgcacct ttcccttcag acggcatcag ccgtttcccc ataatgccgc
      301 ccgatgccta tttatctgcc ccggcaattt caaaactgtg ggtaatcttt gccgctttgc
      361 ccaacataat cgaagccgaa cagtattttt cggcagacat ctgaacggcg cgctcaatgg
      421 ccgattcttt caaatcatgc ccgaatactt tgaaatggat gtggatttcg gtaaacacgc
      481 gcggcgcatc gtccgcccgt ttcgccgtaa ccgtcgcacg gcagtcagtc actttctgac
      541 gctgtttttc ggcaatcatc accacatcga tgctcgaaca gcccgccacg cccaacagca
      601 gcatttccaa agggctgggc ccgcgcttgg ccgcaccttc tgccgccgaa ccctccataa
      661 cgacgctgtg cccgctttcc gtcgtgccga caaagcacat tccgtctatc cattttgatg
      721 taacctgcat ggtgtcattc ctgaaaatag cgttaaaacc gctttgcata tggcgttatt
      781 gtaaacaatt tcaagcggct tatgcagaaa tatggacaaa acggcaaaaa aacgcctgaa
      841 aaccgattta cggtttggcg gactggccat tgatctgcac cgatttgagt ttcagcgtat
      901 aggttttgcc gtcgtcggta tagccgattt gtgccggaat attgttcagg gacggtgcga
      961 agaaatacat taccgtatcg tcgccgcgcc gcacccgata tttgacgact tcggtttcca
     1021 cgccgcctat gctgtatttt cctgtacccg ccttattcaa accgccgacg gaataaagtt
     1081 ttttgccgtt ggtgattttc agccccgggg ggagtttcgc gtcatttgcc gccaactgcc
     1141 aggcaagcgt gaacaaatcc atagccttgg ggctttgctc ggttttgctc tcgcccgctt
     1201 tgccgtaggt tacgctgccg tcggcgaatt tggcttccgc atacagtttg cccctgcgta
     1261 tgtctctata gtaggtaggg tgcagggtat tgccgacaac cgtaccgccg gactcgaaac
     1321 ggatattgta tagcggcact ttaatcgtcg aaacgatttt gtaagcattg ccgctgcgtt
     1381 caaatgtcat cgtggcggga atgccgtagc tgccggaata gtgcagcacg gcggattggg
     1441 gcagccctgc cgcatacgcg cacggcaggg cggcggacaa aatggcggcg gaaaatatat
     1501 ttttaaaagt cttcatcatt tgctcccgcc cggtttacgc cgtcagaaaa cgggcggcat
     1561 cggcgttttc cgaatttctg acgcggtttc cctcgataat caggcggccg gcggcaaaat
     1621 cggcaacggc tttcggatag agtttatgct cgacagccaa aacccgggcg gcaacatcgt
     1681 ctgccgtatc gccgtcgagt atcggcacaa ccccttgcga tacaatcggg ccgcaatcca
     1741 gttcggcagt aacgaaatgg atggtgcagc cggcaacgcg acaacctgcc tccaaagcgc
     1801 gttcgtgcgt atgaagtcca gtaaacgagg gaaggatgga cgggtgaatg ttcatcagcc
     1861 tgccttcgta atgggcacag aactcagggg tcagaatccg cataaaacct gccaaaacca
     1921 ccaagtcggg ttgatatgcg tcgatttttt ccatcatggc ggtatcgaag gcaagtcgtg
     1981 attcaaagtt tttatgatgc aggctgtcgg tcgggatgcc gcgttcggcc gcccattgca
     2041 aaccggcagc cgtttcgctg ttgctcaaca cggcggcaat gcggacgttg ggaatggcgg
     2101 cattgacgat tgcctgcata ttgctgccgc gtccggaaat caggatgacg atgtttttca
     2161 taatggtacg cttttgaaag ggatgccgtc tgaaccgctg tttggtggtt tcagacggca
     2221 tttgccgtaa aaatgcccga aaacctgttt cgggcatgga ttcggactta atttactttt
     2281 ttgatgtcga cttgagccgg ctgcttggcg ggcgcgtttt cgggtgcgcc gattttgacc
     2341 agtttcacat caaataccaa agtggcgttc gggccgattt tgtcgcccgc accctgttcg
     2401 cggtaggcaa ggttggacgg gatgtagaac gtggcttcgc cgccttcttt cagaagctgt
     2461 acgccttcgg tccaacccgg aatcacttgg ctcaaaggga aggtgaccgg gccgccgttg
     2521 gctttgctgc tgtcgaatac cgtaccgtca atcaggcggc cttcgtattc cacggtaacg
     2581 atgtcgtctt tggacggctg tttgccttca ccctgtttgg tgattttgta ttgcaggccg
     2641 gaagcagtgg tcttcacgcc gtctttggcg gcattttctt tcagaaaggc ttcgcctttt
     2701 tctttattgg ccttcgcgtc cgccttgtgt ttttctacgg ctttagcctg ttgttcctga
     2761 aggaatttca tcatgacttc ctgagcctgc tcttcagtca ttttgatttc tttgccgtca
     2821 tacactgcct gcatggcttc ggtaaagact ttcaaatcga tttccgcacc ctgttccttc
     2881 atttgcttca gggagcgtcc gatgtccacg cccatcgcat agcttgcctg ctgcatcgtg
     2941 ctgccgatcg aagaggtgtc gccctgcgcg gcagaagcgg cggcaggttc ggatgcggct
     3001 tcttttttgc cacaggcgga aagtgccaaa gcggcggaaa gggtcagtgc gctgattttg
     3061 aaaatggtgt tcatgatgga tcttcgctgt cgataaggtc ggaaaaacgg gattatagcc
     3121 gagtttgaat gtttcaacac acaggatgac acataaagcg tcaatcgtgt gttgccctgt
     3181 tttggaaggg attgaacctt ccaaaataag ttttgattct accgccccga gggacagatg
     3241 tccaagtggc ggggttcaac cgataaggaa attttaatca aatagaatca agcctgttta
     3301 aattttgtaa atgcggcatt tcagacggca ttttatgcct tgccctccat gccgtgatgt
     3361 tcgatggcaa aaccgcttcg gcggtaggcg gtaaagcgtt cgcgcgcgtc ggcgagatct
     3421 tccaagctgt tgccgacgat ttccaaaacg cgcgcgggca agaccggagc ggtgttccaa
     3481 aaaccgtcgg acaggttcaa aacagtcatg ccttcgggaa ttcggggcgg attgccgccg
     3541 caagcaagca ggacggatgt ttcagacggc atggcttctt ccatttccca aatttcgtgc
     3601 ggaatgaaac tctcggcttc gtattgccaa agcattttgt ccaattcctg aagccgcccg
     3661 aacgaatcgg accacaccag tatcctgccg ccgtcccgaa tcgcacgggc aatcaggcgg
     3721 caggtgaaaa tcggaacttg ggcaacgtgc gtgtaaaagg tggctttcgg catattgttt
     3781 gagcatttgg caggacgatg ccgtctgaaa ggcttcagac ggcattgtgg caaaattaaa
     3841 gattccgcag atagttcagc agcaagggaa cgggacggcc agtcgcacct ttttccgctc
     3901 cggatttcca cgccgtaccc gcgatgtcaa ggtgcgccca cgggtagcct tcggtgaagt
     3961 aagacaggaa tgttgcggcg gtaatcgtgc ccgcgccggg cgtgccgata ttggggatgt
     4021 cggcaaagtt ggatttgagc tggtctttgt aggtttcaaa gagcggcagt tgccacgctt
     4081 tgtcgtccac gttgtaggaa gcggcaagca ggctgtcgac caaatcttga ttgttgccca
     4141 tcacgccgct gacatcgtgc cccaaggcga caatacacgc gccggtcagg gtggcgacgt
     4201 cgatgacggc tttgggtttg aactgttcgg cgtaagtgag cgcgtcgcac aaaatcagac
     4261 ggccttcggc atcggtgttc aacacttcga tggtcagacc tttcatactt ttcacgacat
     4321 cgcccggttt gtttgccgcg ccggaaggca tattttcaca agtggcgacg acggcaatca
     4381 ggttaatcgg cagttgcagt ttgacggcgg cgcagaaggt gctgatgacg gttgccgcgc
     4441 cgcacatatc aaacttcatt tcgtccatgt tcaggccggg tttgagggaa atgccgccgg
     4501 tgtcgaaggt aatgcctttg ccgaccaata ccacaggcgc ggcttctttg tccgccgcac
     4561 cgaaatagct cagttcgacc aaatagggat cttcgacact gcctttggcg accgaccaaa
     4621 acgaacccat gttttctttg atgtagtctt tttcgatgat tttggcgtgc gcgcccagtt
     4681 tttcggcttc ggctttggcg gtgcgcgcta aaaattcggg cgtgcattcg ttgggcgcgg
     4741 cgttgcccaa gtcgcggcag aggctttgtc cgtaaacttg cgcttcggcg acgcgcaagg
     4801 cttctttaac gacggcttcg tgtgcgctgt ggaacacggc ggtttcaaat ttggcgggct
     4861 tggcttcttt tttgtagcgg tcgaaacggt aggcggcgtt gccgaacgca atcgcaaacg
     4921 cttcggctac ggcggcggct tgcgcttcat cgaaggcatg gatgtccaca ttgaccgttt
     4981 cctgattttg cgcccatttg gcggcttcgg cggcggcctt gttcaatgcg gcgcggccgg
     5041 tgcttttcag acagcatacg gcaacagcct gcaaaccgtt gcctgtcggg atttttgtgt
     5101 cggcaaaatt ttgaccttct tcaagcgaag acaaaagggc aagggcggtc ggatggttta
     5161 attgcgcctc ttcggtgcag acaaataact gtgcgcctgc ctgctgttcc tgcaagattt
     5221 cggtttttgt gctaaattcc acgtttattc tcctgattga gacggttgtc ggtagttttc
     5281 gaacggcctt tcgctcaaaa gaccgtctga agacggctgg cacgattgta ccccatttga
     5341 agcaccgtct gaaaccttgc gcggacaatc cgcctgcgcc gaaccgctta ccgccccctg
     5401 accgcgattc tatgatttat caaagaaacc tcatcaaaga actctctttt accgccgtcg
     5461 gcattttcgt cgtcctcttg gcggtattgg tctccacgca ggcaatcaac ctgctcggcc
     5521 gtgccgccga cgggcgtgtc gccatcgatg ccgtgttggc attggtcggc ttctgggtca
     5581 tcggtatgac gccgcttttg ctggtgttga ccgcatttat cagtacgttg accgtgttga
     5641 cccgctactg gcgcgacagc gaaatgtcgg tctggctatc ctgcggattg gcattgaaac
     5701 aatggatacg cccggtgatg cagtttgccg tgccgtttgc cgttttggtt gccgtcatgc
     5761 agctttgggt gataccgtgg gcagagctac gcagccgcga atacgctgaa atcctgaagc
     5821 agaagcagga attgtctttg gtggaggcag gcgagttcaa cagtttgggc aagcgcaacg
     5881 gcagggttta ttttgtcgaa accttcgata ccgaatccgg catcatgaaa aacctgttcc
     5941 tgcgcgaaca ggacaaaaac ggcggcgaca acatcatctt cgccaaagaa ggtaacttct
     6001 cgctgaacga caacaaacgc acgctcgaat tgcgccacgg ctaccgttac agcggcacgc
     6061 ccggacgcgc cgactacaat caggtttcct tccaaaaact caacctgatt atcagcacca
     6121 cgcccaaact catcgacccc gtttcccacc gccgtaccat tccgaccgcc caactgattg
     6181 gcagcagcaa cccgcaacat caggcggaat tgatgtggcg catctcgctg accgtcagcg
     6241 tcctcctact ctgcctgctt gccgtgccgc tttcctattt caacccgcgc agcggacata
     6301 cctacaatat cttgattgcc atcggtttgt ttttaattta ccaaaacggg ctgaccctgc
     6361 tttttgaagc cgtggaagac ggcaaaatcc atttttggct cggactgctg cctatgcaca
     6421 tcatcatgtt cgtcatcgca atcgtacttc tgcgcgtccg cagcatgccc agccagccct
     6481 tctggcaggc ggttggcaaa agtctgacat tgaaaggcgg aaaatgaacc tgatttcacg
     6541 ttacatcatc cgtcaaatgg cggttatggc ggtttacgcg ctccttgcct tcctcgcttt
     6601 gtacagcttt tttgaaatcc tgtacgaaac cggcaacctc ggcaaaggca gttacggcat
     6661 atgggaaatg ctgggctaca ccgccctcaa aatgcccgcc cgcgcctacg aactgatgcc
     6721 cctcgccgtc cttatcggcg gactggtctc tctcagccag cttgccgccg gcagcgaact
     6781 gaccgtcatc aaagccagcg gcatgagcac caaaaagctg ctgttgattc tgtcgcagtt
     6841 cggttttatt tttgctattg ccaccgtcgc gctcggcgaa tgggttgcgc ccacactgag
     6901 ccaaaaagcc gaaaacatca aagccgccgc cattaacggc aaaatcagca ccggcaatac
     6961 cggcatttgg ctcaaagaaa aaaacagcat tatcaatgtg cgcgaaatgt tgcccgacca
     7021 taccctgctg ggcattaaaa tctgggcccg caacgataaa aacgaactgg cagaggcagt
     7081 ggaagccgat tccgccgttt tgaacagcga cggcagttgg cagttgaaaa acatccgccg
     7141 cagcacgctt ggcgaagaca aagtcgaggt ctctattgcg gctgaagaaa actggccgat
     7201 ttccgtcaaa cgcaacctga tggacgtatt gctcgtcaaa cccgaccaaa tgtccgtcgg
     7261 cgaactgacc acctacatcc gccacctcca aaacaacagc caaaacaccc gaatctacgc
     7321 catcgcatgg tggcgcaaat tggtttaccc cgccgcagcc tgggtgatgg cgctcgtcgc
     7381 ctttgccttt accccgcaaa ccacccgcca cggcaatatg ggcttaaaac tcttcggcgg
     7441 catctgtctc ggattgctgt tccaccttgc cggacggttc ttcgggttta ccagccaact
     7501 ctacggcatc ccgcccttcc tcgccggcgc actacctacc atagccttcg ccttgctcgc
     7561 tgtttggctg atacgcaaac aggaaaaacg ttgaaccaat gccgtctgcc ccccttcgga
     7621 cggcattggt ttttattatc atattcccgc agacagatag ccgttcccta ttatagtgga
     7681 ttaacaaaaa ccagtacggc gttgcctcgc cttgccgtac tatttgtact gtctgcggct
     7741 tcgtcgcctt gtcctgattt ttgttaatcc actatacatt acctgtcata acagttccat
     7801 ttttgttaaa actagtctat gatagcggta caaatattgt ttacaatatt taacgcaaat
     7861 catttgcaac ccgacaaaag aaaaacagaa aaaggaacaa agagatgtta gaagcctatc
     7921 gtaaagccgc cgccgagcgc gccgccctcg gcattcccgc cctccctttg aacgcgcagc
     7981 aaaccgccga tttggttgag ctgctgaaaa gcccgcccgc aggcgaaggc gagttcttgg
     8041 tcgaactgct tgcccaccgt gttccgcccg gtgtggacga tgccgccaaa gtcaaagcct
     8101 cattcctggc tgccgttgcc gaaggcagcg cgtccagccc gctgatctcc cccgaatatg
     8161 cgaccgaact cttaggtacg atgctcggcg gttacaatat ccacacctta atcgaactct
     8221 tggacgacga caaactcgcg cccattgccg ccaaaggctt gaaacatacg cttctgatgt
     8281 tcgattcctt ccacgacgtt caggaaaaag ccgaaaaagg caacaaatac gcgcaagaag
     8341 ttttgcaatc ttgggcagat gccgaatggt ttacctcacg cgccaaagtt cccgaaaaaa
     8401 tcaccgttac cgttttcaaa gttgacggcg aaaccaatac agacgacctc tcccccgcgc
     8461 ccgacgcgtg gagtcgtccc gatattccgc tgcacgcgct ggccatgctg aaaaacccgc
     8521 gcgacggcat cacgcccgac aaaccgggcg aagtcggtcc gattaaattg ttggaagaac
     8581 tcaaagccaa aggccatccg gttgcttacg tcggcgacgt ggtcggtact ggttcttcac
     8641 gcaaatccgc gaccaactcc gtcatttggc ataccggcga agacattccg ttcgtgccga
     8701 acaaacgctt cggcggcgtg tgcttgggcg gcaaaatcgc gccgattttc ttcaataccc
     8761 aagaagactc cggcgcgctg ccgattgaag tcgatgtttc cgctctaaaa atgggcgatg
     8821 tcgtcgatat cctgccttat gaaggcaaaa tcgtgaaaaa cggcgagact gttgccgagt
     8881 ttgaattgaa atcacaagta ttgctggacg aagtgcaagc cggcggccgt atcaacctga
     8941 ttatcggccg aggtctgacc gccaaagcgc gcgaagccct gaaactgcct gcctctactg
     9001 cattccgcct gccgcaagcg cctgccgaaa gcaaagccgg tttcaccttg gcgcaaaaaa
     9061 tggtcggccg cgcctgcggt cttcccgaag gacaaggcgt gcgtccgggt acttactgcg
     9121 aaccgcgtat gacgacggtc ggctcgcaag acacgaccgg cccgatgacc cgcgacgagt
     9181 tgaaagactt ggcttgtttg ggcttctccg ccgatatggt gatgcagtct ttctgccaca
     9241 ccgccgccta tccgaaacct gtcgatgtaa aaacccataa agaactgccc gcctttattt
     9301 ccacccgtgg cggcgtgtcc ctgcgtccgg gcgacggcgt catccactcg tggctcaacc
     9361 gcctgctgct gcccgatacc gtcggcaccg gcggcgacag ccacacccgt ttccccatcg
     9421 gtatttcctt ccccgccggc tctggcttgg ttgcctttgc cgccgcaaca ggcgtaatgc
     9481 cgctcgatat gcccgagtct gtattggtac gcttcagcgg caaactgcaa ccgggtgtaa
     9541 ccctgcgcga tttggtgaac gccattccgc tgtacgcaat caaacaaggt ttgctgaccg
     9601 ttgccaaagc cggtaagaaa aacatcttct ccggccgcat cctcgaaatc gaaggcctgc
     9661 ctgatttgaa agtggaacaa gcctttgaat tgaccgacgc atccgccgaa cgctccgccg
     9721 ccggctgtac cgtgaagctc aacaaagagc cgattatcga gtacatgaaa tccaacgtcg
     9781 tgttgatgaa aaacatgatt gccgacggct atcaagaccc gcgtactttg gaacgccgca
     9841 tcaaagccat ggaaaaatgg ctggcaaatc ccgagttgct cgaagcggat aaagatgccg
     9901 aatacgccgc cgtgattgaa atcaacatgg acgacatcaa agagccgatt atcgcctgcc
     9961 cgaacgaccc ggacgacgtg tgcttcatgt ccgaacgctc cggcaccaaa atcgacgaag
    10021 tattcatcgg ttcgtgtatg accaacatcg gccacttccg cgccgcctcc aaacttttgg
    10081 aaggcaaggc agacaccccc gtccgcctgt ggattgcgcc gccgaccaaa atggacgcga
    10141 aacaattgtc cgacgaagga cactacggcg tactcggacg tgccggcgcg cgtatggaaa
    10201 tgccgggttg ctccttatgt atgggtaatc aggcgcaagt acgcgaaggt gcgaccgtta
    10261 tgtccacctc cacccgcaac tttccgaacc gtttgggtaa aaacaccttt gtttacctcg
    10321 gttcggcgga attggcagcg atttgctcca aactgggtaa aatcccgacc gttgaagaat
    10381 atcaagccaa tatcggcatc atcaacgaac agggcgataa aatctaccgc tatatgaact
    10441 tcaacgaaat cgacagctac aacgaagtag ccgagaccgt gaacgtttaa tccccgtcat
    10501 ccgtatgaag taagggattg accgcaatgc cgtctgaaca accttcagac ggcattgcaa
    10561 cattccgcta acccttcttt ccgcaaacgc tgcaaatacg gcgttcacgc ccccacataa
    10621 aggaaacgac agtgaacctg aaaaaccgcc attttctgaa acttttagac ttcacgccag
    10681 aagaaatcac cgcctacctc gaccttgccg ccgaattgaa agccgccaaa aaagcagggc
    10741 gcgagattca gcggatgaaa gggaaaaaca tcgccctgat ttttgaaaaa acctctactc
    10801 ggacgcgctg cgcgtttgaa gtcgccgcgc gcgatcaagg cgcgggagtg acttatttag
    10861 agccgtccgc cagccaaatc gggcataagg aaagcatcaa agacaccgcc cgcgtgttgg
    10921 gcaggatgta cgacggcatc gaatatcgcg gcttcgctca ggaaactgtc gaagaattga
    10981 cgaaatacgc gggcgtaccc gtgttcaacg ggctgaccaa cgagttccat cccacacaaa
    11041 tgcttgccga cgcactgact atgcgcgaac acagcggcaa acctttgaac caaaccgcgt
    11101 ttgcctacgt cggcgacgcg cgttacaaca tgggcaattc cctgctgatt ttaggggcaa
    11161 aattggggat ggacgtgcgt atcggcgcac cgcaaagcct gtggccgtct gaaggcatta
    11221 ttgccgccgc acacgccgcc gccaaagaaa ccggcgcaaa aattaccctg accgaaaacg
    11281 cgcatgaagc cgtgaagaat gttgatttta ttcataccga tgtgtgggtc agcatgggcg
    11341 agccgaaaga agtctggcag gaacgcatcg atttgctgaa agattaccgc gttacgcccg
    11401 aactgatggc ggcatcgggc aatccgcaag tcaaattcat gcactgcctg cccgccttcc
    11461 acaaccgcga aaccaaagtc ggcgaatgga tttacgaaac cttcgggctg aacggtgtgg
    11521 aagttacaga agaagtattc gaaagccccg ccagcatcgt gttcgatcag gcggaaaacc
    11581 gtatgcacac gattaaagcg gtaatggtcg cggctttggg cgactgacag aactgtgcct
    11641 gtttaaattc atccgcaaca cagataccgt ctgaacacga tgttcagacg gtatccatat
    11701 atagtggatt aaatttaaac cagtacggcg ttgcctcgcc ttgccgtact atttgtactg
    11761 tctgcggctt cgtcgccttg tcctgatttt tgttaatcca ctataaaaaa actgcctaca
    11821 cgatgtgtag gcagtcccgt ttgaaaacaa tcagtttttg tcttggtcaa ccaatttgtt
    11881 ggcagtaatc caaggcatca tggcacgcag ttgtgcgccg actttttcaa cttggtggtc
    11941 ggcattcaga cggcggcggg cagtcataga cgcgtagttg acattaccct cttggataaa
    12001 catttttgcg tattcgccgg tttgaatgcg tttcagggca ttgcgcatgg cttctttgct
    12061 ggaagcattg accacttcag ggccggtaac gtattcgccg tactccgcat tgttggaaat
    12121 ggagtagttc atattggcaa taccgccttc gaaaatcagg tcaacaatca gtttcatttc
    12181 gtgcagacat tcgaagtaag ccatttcagg cgcgtaaccg gcttcggtca gggtttcaaa
    12241 acccgccttg atcaactcga ccacgccgcc gcacaatacg gcttgttcgc caaacagatc
    12301 ggtttcggtt tcttcgcgga aagtggtttc aatcacaccg cctttggtgc cgccgttggc
    12361 agccgcataa gacagggcga tgtctttggc tttgccggaa ttgtcttggt aaacggcaat
    12421 cagagaaggc acgccgccgc cgcgtttgta ttcactgcgt acggtatgac ccggaccttt
    12481 gggggcaacc ataatcacgt ccaagtcggc acgcggaacg atttggttgt agtgcacgtt
    12541 gaagccgtgt gcaaatgcca gcgttgcgcc ttctttcaaa ttggctgtaa cttcggcgtg
    12601 atagacggca ggcatggttt cgtcaggcag cagcagcata acgacatcgg cttctttggt
    12661 cgcttcagca acggttttga cgacatggcc ggctgcttcg gcttttttcc aagaagaacc
    12721 ttggcgcaga ccgatcacca cgtttacacc cgaatctttc aggttggcag catgggcatg
    12781 accttgcgaa ccgtaaccga tgatggcaac ggttttgcct ttgattaggg acagatcggc
    12841 atctttatcg taatagactt gcatttgatt tcctttaagg taaatggttg tcgaagcctt
    12901 aaaatgttga gcggcttcag acgggttaaa cagagtgtgc cgcttaagcg gcaacttcat
    12961 tcatcaatac gatttccaac gcttcggttt tgccgtcgac ggactggacg aaggcttgga
    13021 aatgcgcgct ggcgttatgt tcgtcaatag ctgcttggga tttccaattt tccacgaaaa
    13081 caaaacggtt cggtttaccg atttcctgat ggagatcgta gctgatgttg ccctcttctg
    13141 cacggctggc tttgaccagt tctttaaact gtgctaccag tgtttctgtg tattccggtt
    13201 tgacggtaac cagtgcgaca attttaatgt tcgacataaa tctctcctgc cgttcgtttt
    13261 tcagacggca ttcaaatacc gtgccgtctg aaaggttacg gcgttaaatt ttcaaaatac
    13321 gctcaccgcg accgatgccg gccgcgcctg tacgtacggt ttccaaaatt tgggcgcgtc
    13381 cgaccgtttc caaaaaggaa tccagcttgt cggtcgagcc ggtaatttca atcgtatagc
    13441 tgcggtcggt tacgtcgatg atgctgcccc ggtagatttc ggtcaaacgc aaaaattcgt
    13501 cgcggtcttt gccggcggca cggactttta ccaacatcag ttcgcgttcg acaaaacggc
    13561 tttcgttcaa atcgaccact ttaatcactt caatcaattt attgagttgc ttggtgattt
    13621 gttcgataac ctgctcgtcg ccgtgggtaa cgatggtcat acgggacagg gttttgtctt
    13681 cggtcggcgc aaccgccaaa gaatcgatat tgtaatcgcg tgcagagaac aaaccgacca
    13741 cgcggctcat cgcacctgat tcgttttcaa tcagaacaga taagatatgt cgcatttgcc
    13801 tctccttacg ccttttcgtc cgcacgcata tgcggcggaa gtaccatttc gtccaaacct
    13861 ttgccgttgc cgaccatggg catcacattc tgtttctggt cggtcaggaa gtcgataaac
    13921 accagcctgt ctttttggtt caatgcttcc aacaacgcac cttccacatc agacttcttg
    13981 tccacgcgga taccgatatg gccgtatgcc tcggcaagtt tgacgaaatc gggcaaagaa
    14041 tcgaaataag tttccgactc tcggccgccg taatatattt cctgccactg gcgtaccata
    14101 ccgagataac cgttgttcag cgtaatgacg ttaaccggaa tccgatattg gaaacaggtg
    14161 gacaactctt ggatgttcat ctggatcgag ccgtcgccgg taatacagaa tacgtcttga
    14221 tccggggcgg caagttttgc accaatcgca taaggcagac ccacgcccat cgtacccaaa
    14281 ccgccggaat tgagccattg gcgcggacgt tcgaagggat aatattgagc cgcaaacatt
    14341 tgatgctgcc ctacatccga tgtgatgatt gccgaattgc cggtaatctc ggcaagcttc
    14401 tgaatcacat attgtggctt gataatttcg ctgccgttgt caaaccacaa gcaatcttgg
    14461 gaacgccatt cctctatggt tttccaccat ttgcccaaag catcttcaga cggcatgaac
    14521 tcttgttttt gccacagcgc aaccatctca gacaaaacat ttttcacgtc gccgacaatc
    14581 ggaatgtcca ccttcacgcg tttggcgatg ctggaaggat cgacatcgat atggataacc
    14641 ttcttcgcct tctcgaaaaa tttggacggt acggaaacca cacggtcgtc aaaacgcgca
    14701 cctacggcaa gaacgacatc cgcattctgc atggcaaggt ttgcctcgta agtaccgtgc
    14761 ataccgagca taccgaggaa ttggcggtcg ccggaaggat aagcgcccaa gcccatcagc
    14821 gtacccgtgc acggagcacc cgtcattcgg acaaatcggg tcagctcttc agaagcatta
    14881 cccaacacca cgccgccgcc aaaatagacg accggacgtt tggcagatgc caacatctgc
    14941 acggcctttt taatctgacc gatatgccct tgaacaaccg gttgatacga acggataaaa
    15001 atgtcttcct gaggatagct gaatttcgcc atcgcctgcg taacatcttt cgggacatca
    15061 accaccacgg gccccggtcg gccgcttgcg gcaatttgga acgccttttt aatggtttcc
    15121 gccaactcat tgatgtccgt aaccaggaaa ttgtgtttga cgcacggacg ggtaataccc
    15181 accgtatcaa cttcttggaa cgcatccgta ccaatcaggg aattgcctac ctgcccgctg
    15241 atgaccacca tcggaatcga atccgtatag gcagtagcaa taccggtcag tgcattggta
    15301 acgcccgggc cggatgtaac caatgccacg cccaccttac cgctgacgcg cgcatacgca
    15361 tctgccgcgt gtactgccgc ctgctcgtga cgggtcagaa tgtgcttgaa tttattgagt
    15421 tggaaaaggg catcgtagat ttcgataacc gcaccgccgg gataaccgaa aacgtactcg
    15481 acaccttcgg ctttgagact ctgcactatg atttgcgcgc ctgataactg cataacgacc
    15541 tcttttatac ggtttcaaac caatagggac aaaccgcttt gccacagcac ctgtaatgca
    15601 attccaccaa gcagcgattt agggtacgcg cattggggga acacggcaac agacggatta
    15661 tccaatcaat tggaaaggaa cacagagttt gtgaaaaaga gtagaaacga taacgcaaac
    15721 cgacagttca atcaagaaaa atctttcatc ttttaatatt ttttgaaagc agagaaatta
    15781 ttgattgatt ttaaaagaat aaaatcagga gtaccttttt tgaaagatgg aaattgttga
    15841 cagtttgtgt aggaggggca gatgtgaaaa acccttcttc gatatcaaga attgtaaaat
    15901 ttacagggtt tcatcccaat aaagactcgg gatattgatt gaacttgatt ttatttttga
    15961 tatatcaaaa atattcccaa ccatacttcc tgaaaatggc tcattgcacc ggactgtatt
    16021 ggacggcatt gacagaacca agagggctaa caacgactta atatattg
//
LOCUS       DAXIFD010000028        15528 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.028, whole genome shotgun sequence.
ACCESSION   DAXIFD010000028 DAXIFD010000000
VERSION     DAXIFD010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15528
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.028"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            6..81
                     /locus_tag="ACFOCN_000662"
     tRNA            6..81
                     /locus_tag="ACFOCN_000662"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:39..41,aa:Trp,seq:cca)
     gene            196..474
                     /gene="secE"
                     /locus_tag="ACFOCN_000663"
     CDS             196..474
                     /gene="secE"
                     /locus_tag="ACFOCN_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HFC6969855.1"
                     /translation="MTEHTPEKKNVKVDQLVVQDKESASNSGKEGFFAYFSNSWSEFK
                     KVVWPKREDAVRMTVFVIVFVAVLSIFIYAADTAISWLFFDVLLRREG"
     gene            476..1012
                     /gene="nusG"
                     /locus_tag="ACFOCN_000664"
     CDS             476..1012
                     /gene="nusG"
                     /locus_tag="ACFOCN_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HFC6969856.1"
                     /translation="MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEK
                     VVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQR
                     EAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQI
                     FGRETPVELEFSQVEKIN"
     gene            1113..1547
                     /gene="rplK"
                     /locus_tag="ACFOCN_000665"
     CDS             1113..1547
                     /gene="rplK"
                     /locus_tag="ACFOCN_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HFC6969857.1"
                     /translation="MAKKIIGYIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNA
                     ATQGMEPGLPIPVVITAFADKSFTFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLT
                     RAQLEEIAKTKEPDLTAADLDAAVRTIAGSARSMGLDVEGVV"
     gene            1547..2242
                     /gene="rplA"
                     /locus_tag="ACFOCN_000666"
     CDS             1547..2242
                     /gene="rplA"
                     /locus_tag="ACFOCN_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HFC6969858.1"
                     /translation="MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDV
                     SFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAA
                     EIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTM
                     GLGIRVDTSSVNN"
     gene            2472..2972
                     /gene="rplJ"
                     /locus_tag="ACFOCN_000667"
     CDS             2472..2972
                     /gene="rplJ"
                     /locus_tag="ACFOCN_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HFC6969859.1"
                     /translation="MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRAN
                     ARKEGVYLRVLKNTLARRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKD
                     DKIVVKAGSYNGEVMNAAQVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKK
                     AGEEAA"
     gene            3030..3401
                     /gene="rplL"
                     /locus_tag="ACFOCN_000668"
     CDS             3030..3401
                     /gene="rplL"
                     /locus_tag="ACFOCN_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HFC6969860.1"
                     /translation="MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA
                     GAGAADAEEKTEFDVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVS
                     KAEAEDIQKQLEEAGAKVEIK"
     gene            3592..7770
                     /gene="rpoB"
                     /locus_tag="ACFOCN_000669"
     CDS             3592..7770
                     /gene="rpoB"
                     /locus_tag="ACFOCN_000669"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HFC6969861.1"
                     /translation="MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENA
                     FDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRA
                     RIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVF
                     FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALG
                     YNNEQILDIFYDKETFYLSSNGVQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITA
                     KNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLASANDEITEELLAKFDING
                     VKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNR
                     LFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVE
                     DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQ
                     AESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLT
                     RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDG
                     KVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDV
                     ATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSA
                     TAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPAV
                     KAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYT
                     SIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKV
                     TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDKRA
                     QSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLA
                     GLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQ
                     KMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPS
                     RMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDSLTD
                     EEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSKTQITL
                     YDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
                     GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVK
                     EIRSLGLDIDLERY"
     gene            7927..12102
                     /gene="rpoC"
                     /locus_tag="ACFOCN_000670"
     CDS             7927..12102
                     /gene="rpoC"
                     /locus_tag="ACFOCN_000670"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HFC6969862.1"
                     /translation="MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPE
                     TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRE
                     RMGHIELAAPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQ
                     LLTEDDYYNKLDEYGDDFDAKMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKK
                     IAKRLKVLEAFHRSGMKLEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN
                     RNNRLKRLLELHAPDIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIK
                     GKGGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIFHKLEKQGL
                     ASTVKAAKKLVEQEVPEVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPILIEGKAIQ
                     LHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDI
                     VLGLYYMTRDRINAKGEGSLFADVKEVHRAYHTKQVELGTKITVRLREWVKNEAGEFE
                     PVVNRYETTVGRALLSEILPKGLPFEYVNKALKKKEISKLINASFRLCGLRDTVIFAD
                     HLMYTGFGFAAKGGISIAVDDMEIPKEKVALLAEANAEVKEIEDQYRQGLVTNGERYN
                     KVVDIWGRAGDKIAKAMMDNLSKQKVIDRDGNEVDQESFNSIYMMADSGARGSAAQIK
                     QLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHGARKGLADTALKTANSGYL
                     TRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRERILGRVTASDVVDPSSG
                     ETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHCYGRDLARGKLVNAG
                     EAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTARFSSQMRYVANN
                     KGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTLATWDPHTRPM
                     ITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRPTVKLLDEN
                     GVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVA
                     ELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGVAYETLISKEKQILVHDG
                     QVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQ
                     MLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
                     SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQE
                     VEQETAETQVTDE"
     gene            12360..12731
                     /gene="rpsL"
                     /locus_tag="ACFOCN_000671"
     CDS             12360..12731
                     /gene="rpsL"
                     /locus_tag="ACFOCN_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HFC6969863.1"
                     /translation="MPTINQLVRKGRQKPVYVNKVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTAGVKDRKQARSKYGAKRPK"
     gene            12849..13319
                     /gene="rpsG"
                     /locus_tag="ACFOCN_000672"
     CDS             12849..13319
                     /gene="rpsG"
                     /locus_tag="ACFOCN_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HFC6969864.1"
                     /translation="MPRRREVPKRDVLPDPKFGSVELTKFMNVLMIDGKKSVAERIVY
                     GALEQIEKKTGKVAIEVFNEAIANAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMR
                     WVRDAARKRGEKSMDLRLAGELIDASEGRGGALKKREEVHRMAEANKAFSHFRF"
     gene            13338..15443
                     /gene="fusA"
                     /locus_tag="ACFOCN_000673"
     CDS             13338..15443
                     /gene="fusA"
                     /locus_tag="ACFOCN_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HFC6969865.1"
                     /translation="MARKTPISLYRNIGISAHIDAGKTTTTERILFYTGLTHKLGEVH
                     DGAATTDYMEQEQERGITITSAAVTSYWSGMAKQFPEHRFNIIDTPGHVDFTVEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYQVPRLAFVNKMDRQGANFFRVVEQMKT
                     RLRANPVPIVIPVGAEDNFSGVVDLLKMKSIIWNEADKGTTFTYGDIPAELVETAEEW
                     RQNMIEAAAEASEELMDKYLGGDELTEEEIVGALRQRTLAGEIQPMLCGSAFKNKGVQ
                     RMLDAVVELLPAPTDIPPVQGVNPNTEEADSRQASDEEKFSALAFKMLNDKYVGQLTF
                     IRVYSGVVKSGDTVLNSVKGTRERIGRLVQMTAADRTEIEEVRAGDIAAAIGLKDVTT
                     GETLCAESAPIILERMEFPEPVIHIAVEPKTKADQEKMGIALNRLAKEDPSFRVRTDE
                     ESGQTIISGMGELHLEIIVDRMKREFGVEANIGAPQVAYRETIRKAVKAEYKHAKQSG
                     GKGQYGHVVIEMEPMEPGGEGYEFIDEIKGGVIPREFIPSVDKGIRDTLPNGIVAGYP
                     VVDVRIRLVFGSYHDVDSSQLAFELAASQAFKEGMRQASPALLEPIMAVEVETPEEYM
                     GDVMGDLNRRRGVVLGMDDDGIGGKKVRAEVPLAEMFGYSTDLRSATQGRATYSMEFK
                     KYSEAPAHIAAAVTEARKG"
BASE COUNT         4145 a         3447 c         4010 g         3926 t
ORIGIN      
        1 tttagaggcc aatagctcaa ttggtagagt atcggtctcc aaaaccgagg gttgggggtt
       61 cgagaccctc ttggcctgcc aaataaaaaa ttaaccggcc ttgtgccggt taattttttt
      121 gtatttgtta tttagtaaac tctcttgcca tttacatgga ttgagaatag acagatgcta
      181 tgatggataa ataatatgac agaacatacg cctgaaaaaa agaacgttaa agtggatcaa
      241 ctggttgttc aagataaaga atctgcatct aattccggta aggaagggtt ttttgcatat
      301 ttctcaaatt cttggtccga attcaaaaag gtggtttggc ctaagcgtga agatgctgtc
      361 agaatgactg tatttgttat agtgtttgtt gctgtgcttt ctatatttat ctatgcggca
      421 gatacagcaa tttcgtggtt attttttgat gtattgctga gaagggaagg ttgagatgtc
      481 gaaaaaatgg tatgttgtac aggcgtattc ggggtttgag aagaatgtcc aacgaatatt
      541 ggaagagcgt attgcccgtg aggagatggg agattatttc ggacaaattc tggtgcctgt
      601 agagaaagtt gttgatatcc gcaatggtcg taagactatt agtgaaagaa agtcatatcc
      661 tggttatgtg ctagttgaga tggaaatgac agatgactct tggcatcttg taaaaagcac
      721 cccccgtgtt tccggtttta ttggagggag ggctaataga cctacgccga ttagtcagag
      781 agaggctgaa attattttac agcaggttca gaccggcata gagaagccga aaccaaaagt
      841 tgaatttgag gtcggtcaac aggttcgtgt aaatgaaggg ccgtttgcgg attttaacgg
      901 ggtggttgag gaggtcaatt atgaacggaa taagttacgc gtgtctgttc agatatttgg
      961 tagagaaaca cccgttgagc tggagttcag ccaggttgaa aagattaact gatttttata
     1021 cttgaaaaaa aagcaataag aggatagaat caaaaattaa cttggggagc ggaaatggtt
     1081 ccgcgtctta cccgttttta ggagtccgtt aagtggcaaa gaaaattatc ggctatatta
     1141 aactgcaaat tcctgcaggt aaagccaatc catctcctcc ggttggtcct gctttgggtc
     1201 agcgcggttt gaatattatg gaattttgta aggcatttaa tgctgcaacc caaggtatgg
     1261 agcctggctt accgattccg gttgtgatta ctgcatttgc agataaatca ttcacatttg
     1321 tgatgaaaac cccgccagct tctatcttgt tgaaaaaggc tgccggtttg caaaaaggta
     1381 gttctaatcc tctgaccaac aaagtgggta aattgacccg tgcccagttg gaagaaattg
     1441 ctaaaactaa agagcctgat ttgactgctg ctgacttgga tgcggctgtc cgtactatag
     1501 caggttctgc tcgctcaatg ggcttggatg tggagggtgt tgtataatgg ctaaagtatc
     1561 taaacgcttg aaagctcttc gctcttctgt ggaagccaat aaattatatg caattgatga
     1621 agcaattgct ttggtaaaaa aagcagcgac tgctaaattt gacgagtctg ttgacgtatc
     1681 tttcaacttg ggcgttgatc cgcgtaaatc tgaccaagtt atccgtggtt cggtcgttct
     1741 gcctaaaggc accggtaaga taacccgtgt ggctgtattt actcaaggtg caaatgcaga
     1801 agctgctaaa gaagctggtg cagatatcgt cggtttcgaa gatttggctg ctgaaatcaa
     1861 agcaggcaat ctgaactttg acgttgttat tgcttctccc gatgcaatgc gtattgttgg
     1921 tcaattgggt actattttgg gtcctcgagg cttgatgcca aaccctaaag taggtactgt
     1981 tactcctaac gttgctgaag cagtaaaaaa tgcaaaagca ggtcaagtgc agtaccgtac
     2041 cgacaaggca ggtattgttc atgcaacgat tggtcgtgct tcattcgctg aagctgattt
     2101 gaaagagaac tttgatgcgt tgctggatgc tatcgttaaa gccaagcctg ctgccgctaa
     2161 aggtcagtat ctgaaaaaag ttgctgtgtc tagcaccatg ggtttgggta ttcgcgttga
     2221 tacatcaagc gtaaataact aatcttaagg aattttcaag cagtttggtt ttctgggctg
     2281 cttgaatttg ggctacttaa aattaagtag atgtccaaga ccgtagggat cgtaagattt
     2341 aatcgtaact gccctacgca gacggtagtc ctgaaacaca ttgcaagatt gcttgtaaga
     2401 tgtcttttta ggttaccgcg ctggtgggat atcgttttgg tatcctgttt ataaacagtg
     2461 ggaggtagac cttgagtctc aatattgaaa ccaagaaagt ggcggtcgag gaaattagcg
     2521 cggcaattgc taatgctcaa accctcgtag tcgctgaata tcgcggtatc agtgtttcca
     2581 gtatgactga gcttcgtgcg aatgcacgta aagaaggcgt ttatttgcgc gttctgaaaa
     2641 atactttggc tcgtcgtgca gtgcaaggta cttcatttgc agaattggcc gatcaaatgg
     2701 ttggtccgtt ggtttacgct gcttctgaag atgctgttgc tgctgctaaa gtgttgcacc
     2761 aattcgcgaa aaaagatgac aaaattgtcg ttaaagccgg ttcttacaat ggcgaagtaa
     2821 tgaatgctgc tcaggttgct gagttggctt ctattccgag ccgcgaagag ctgttgtcca
     2881 aactgttgtt cgttatgcaa gctcctgtat cgggctttgc gcgcggtttg gctgctttgg
     2941 cagagaaaaa agccggcgaa gaagccgctt aatcgatttt gtttctgtta atcaattatt
     3001 ttttaataca atatttggag taaaatagca tggctattac taaagaagac attttggaag
     3061 cagttggttc tttgaccgta atggaattga acgacttggt taaagctttt gaagaaaaat
     3121 tcggtgtttc tgctgctgct gttgcagttg caggtcctgc tggtgccggt gctgccgatg
     3181 ctgaagaaaa aaccgaattt gatgtcgttt tggcttctgc cggcgatcaa aaagtcggcg
     3241 tgattaaagt tgtccgtgca attaccggtt tgggtctgaa agaagctaaa gacatcgttg
     3301 acggtgcacc taaaaccatt aaagagggtg tttctaaagc tgaagccgaa gacatccaaa
     3361 aacaactgga agaagccggc gctaaagtcg aaatcaaata atttgatgct tcttatgaag
     3421 gctggcagtt ttctgccagc cttattttgc ttcttaaaat aaacatcaag tattgtttac
     3481 atttatttgc atagttttta tcaaatcatt gcaaataaat gtaaacatca gattgatgcg
     3541 tgccgttgct ttcaaacggc ctattattga aaattacttt tcggagtgta tatgagctat
     3601 tcgtttaccg agaaaaaacg tatccgtaag agttttgcaa agcgggaaaa tgttttggaa
     3661 gttcctttct tgctagcaac ccaaattgat tcttatgcga agtttttgca gctggaaaat
     3721 gcttttgaca aacgtaccga tgacggtctg caggcagcat ttaattctat tttcccgatt
     3781 gtgagccata acggttatgc gcgattggag tttgtgcatt acacattggg cgagcctttg
     3841 ttcgatattc ccgaatgtca gttgcgcgga atcacttatg cagccccctt gcgcgcgcgt
     3901 atccgtttgg tgattttgga taaggaagca tctaaaccga cggtaaaaga agttcgtgaa
     3961 aacgaagtgt atatgggcga aattccgttg atgaccccga gcggttcttt tgtgattaac
     4021 ggcacagagc gtgtgattgt ctcccagttg caccgttcgc ccggcgtatt cttcgagcat
     4081 gacaaaggta agacgcactc ttccggcaaa ttgttattct ccgcccgcat cattccctac
     4141 cgtggttcat ggttggattt tgaatttgat ccgaaagatt tgctgtattt ccgtatcgac
     4201 cgccgccgta aaatgccggt aacgattttg ttgaaggctt tgggctacaa caatgagcaa
     4261 atcttggata ttttctacga caaagaaacg ttctatttgt cttcaaacgg tgttcaaacc
     4321 gatttggtcg caggccgtct gaaaggcgaa actgccaagg tcgatatctt ggataaagaa
     4381 ggcaatgtat tggttgccaa aggtaagcgt attactgcga aaaatatccg tgatattacc
     4441 aatgcaggcc tgacccgttt ggatgtagaa ccggaaagcc tgctgggcaa agcattggct
     4501 gccgatctga ttgattcgga aaccggcgag gtattggctt ctgccaatga tgaaattaca
     4561 gaagagttgt tggccaaatt tgatatcaac ggcgtaaaag aaattacgac cctttacatc
     4621 aatgagttgg atcagggtgc ttatatctcc aataccttgc gtacggatga gactgccggc
     4681 cggcaggcgg ctcgtgttgc gatttaccgt atgatgcgtc cgggcgaacc gcccactgaa
     4741 gaggcggtcg agcaattgtt taaccgcttg ttcttcagtg aagacagcta cgatttgtcc
     4801 cgcgtaggcc gtatgaaatt taatacgcgc acatacgaac aaaaactgtc cgaagcccaa
     4861 caaaactctt ggtacggccg cctgctgaac gaaacgtttg ccggtgctgc cgacaaaggc
     4921 ggttatgtcc tgagcgtcga agatattgtc gcctcgattg cgactttggt cgagttgcgt
     4981 aacggccatg gcgaagtgga cgatatcgat cacttgggca accgccgagt acgttcggta
     5041 ggcgagctga ctgaaaacca attccgcagc ggtttggccc gtgtggaacg tgctgtaaaa
     5101 gaacgtttga atcaggcgga atcagaaaac ttgatgccgc acgatttgat taatgcaaaa
     5161 cctgtttctg ccgctattaa agaattcttc ggctccagcc aattgagtca gtttatggat
     5221 cagaccaacc ccttgtctga agtaacccat aaacgccgcg tatctgcatt gggtccgggc
     5281 ggtttgaccc gcgaacgtgc cggcttcgag gtacgggacg tgcatccgac ccactacggc
     5341 cgcgtatgtc cgattgaaac gcctgaaggt ccgaacatcg gtttgatcaa ctcattgtcc
     5401 gtttatgcgc gcaccaatga ttacggtttc ttggaaacgc cttaccgccg cgttatcgac
     5461 ggcaaagtaa ccgaggaaat cgattacttg tctgccatcg aagaaggccg ctatgtgatt
     5521 gcacaggcga atgccgattt ggattcagat ggcaatctga ttggcgattt ggttacctgt
     5581 cgtgaaaaag gcgaaaccat tatggcaacg cccgaccgcg tccaatatat ggacgtggca
     5641 accggccagg tggtatccgt tgcggcatcc ctgattccgt tcttggaaca tgatgacgcg
     5701 aaccgcgcat tgatgggtgc caacatgcaa cgtcaggcag tgccttgctt gcgtcctgaa
     5761 aaaccgatgg tcggtaccgg tatcgagcgt tccgttgccg ttgactctgc tactgcaatc
     5821 gttgcccgcc gaggcggcgt ggtcgagtat gtcgatgcca accgtgttgt gattcgtgtc
     5881 catgacgacg aagcgactgc cggcgaagtg ggtgtcgata tttacaactt ggttaaattt
     5941 acccgttcca accagtctac caatatcaat cagcgtcctg ccgtcaaagc cggcgatgtt
     6001 ttgcaacgcg gcgatttggt ggccgatggc gcgtccaccg atttgggcga attggctttg
     6061 ggtcaaaata tgaccatcgc cttcatgccg tggaacggtt acaactacga agactcgatt
     6121 ctgatttccg aaaaagtggc tgcggatgat cgttacactt cgattcacat tgaggaattg
     6181 aatgtcgttg cccgcgatac caagctgggt gcggaagaca ttacccgcga tattccgaac
     6241 ttgtccgagc gtatgcaaaa ccgcttggac gaatccggta tcgtttacat cggtgcagaa
     6301 gtagaagccg gcgatgtgtt ggtaggcaaa gtaacgccta aaggcgaaac ccaactgacg
     6361 ccggaagaaa aactgttgcg cgccatcttc ggcgaaaaag cgtctgacgt aaaagatact
     6421 tcactgcgta tgcctaccgg tatgagcggt acggttatcg acgttcaagt cttcactcgt
     6481 gaaggtattc aacgcgacaa acgcgcccaa tccattatcg attccgagtt gaaacgctac
     6541 cgtttggatt tgaacgacca attgcgtatt ttcgacaacg acgcattcga ccgtatcgaa
     6601 cgtatgattg tgggtcaaaa agccaatggt ggtccgatga agctggctaa aggcagcgaa
     6661 attactaccg aatatttggc gggtctgccg agcaggcacg attggttcga tatccgtctg
     6721 accgatgaag atttggccaa gcagttggaa ctgattaaag tgagcctgca acaaaaacgc
     6781 gaagaagcgg acgagttata cgaaatcaag aagaaaaaac tgacccaagg cgacgaattg
     6841 caacccggcg tacaaaaaat ggtgaaagtt tttatcgcca tcaaacgccg tctgcaagcc
     6901 ggcgacaaaa tggcgggccg ccacggtaac aaaggcgtgg tatcgcgcat tctgccagtg
     6961 gaagacatgc cttacatggc ggacggccgt ccggtagaca tcgtactgaa cccattgggc
     7021 gtaccttccc gtatgaacat cggtcagatt ttggaagttc acttgggttg ggcagcaaaa
     7081 ggtatcggcg agcgtatcga ccgtatgctg aaagagcaac gcaaagcagg cgagttgcgc
     7141 gagttcttga acagactcta caacggcagc ggtaagaaag aagatttgga cagcctgaca
     7201 gatgaagaaa tcatcgaatt ggcttccaac ctgcgtaaag gtgcatcttt cgcttctcct
     7261 gtattcgacg gtgcgaaaga gtctgaaatc cgcgaaatgt tgaacttggc ttacccaagc
     7321 gaagatcctg aggttgagaa actgggcttc aacgacagta aaactcaaat cacgctgtat
     7381 gacggccgtt caggcgaagc atttgatcgc aaggttacag tcggtgtgat gcactatctg
     7441 aaactgcacc acttggttga cgaaaaaatg cacgcccgtt ctaccggtcc atacagtctg
     7501 gttacccaac agcctttggg cggtaaagct cagttcggtg gccaacgttt cggtgagatg
     7561 gaggtttggg cattggaagc atacggtgcg gcatacacgc tgcaagagat gctgactgtg
     7621 aagtctgatg acgtgaacgg ccgtaccaaa atgtacgaga acatcgtcaa aggcgaacac
     7681 aaaatcgatg ccggtatgcc cgagtccttc aacgtattgg ttaaagagat tcgttcactg
     7741 ggcttggata tcgatttgga acgctactaa gcagaagttt tcagacggcc tttcaaggtc
     7801 gtctgaaaaa gcggtttcag aataagaatg aagcaatcgg catttaggcc gtctgaaatc
     7861 gaaagtaccg tttcccaata tcgaaaatcc gccacgcggt aaaaatactt ccttcaagga
     7921 gcaaaaatga atttgttgaa cttatttaat ccgttgcaaa ctgccggcat ggaagaagag
     7981 tttgatgcca tcaaaatcgg cattgcttct cccgaaacca tccgttcatg gtcttacggc
     8041 gaagttaaaa aacctgaaac catcaactac cgtacgttca aacctgagcg tgacggtctg
     8101 ttctgcgcca aaatctttgg tccggtcaaa gactacgaat gcttgtgcgg aaaatacaaa
     8161 cgcttgaaat ttaaaggcgt aacctgtgaa aaatgcggcg tagaagtgac cctgtccaaa
     8221 gtgcgccgcg aacgcatggg ccacattgaa ttggcagcac ccgttgccca tatttggttc
     8281 ttgaaatccc tgccttcccg cttgggtatg gtactggaca tgactttgcg cgacatcgaa
     8341 cgcgtattgt actttgaagc atttgtggta accgaccccg gtatgactcc gctgcaacgc
     8401 cgccaattgc tgactgaaga cgattactac aacaaactgg acgaatacgg cgatgacttc
     8461 gatgccaaaa tgggtgcgga aggtatccgc gaattgctgc gtaccttgaa tgtggcgggc
     8521 gaaatcgaaa tcctgcgcca agagttggaa tcgaccgggt ccgacaccaa aatcaaaaaa
     8581 atcgccaaac gtttgaaagt attggaagcc ttccaccgtt ccggtatgaa gctggaatgg
     8641 atgattatgg atgtgctgcc ggtattgccg cctgatttgc gtccgttggt tccattggat
     8701 ggcggtcgtt ttgccacttc cgatttgaac gatttgtacc gtcgcgtcat caaccgtaac
     8761 aaccgtctga aacgtctgtt ggaactgcat gcgcccgaca ttatcgtccg caacgaaaaa
     8821 cgtatgttgc aagaagcggt cgactctctg ttggataacg gccgtcgcgg taaagccatg
     8881 accggcgcca acaaacgccc gctgaaatca ttggcagaca tgattaaagg taaaggcggt
     8941 cgcttccgtc aaaacctgtt gggcaaacgt gtggactact ccggccgttc cgtgattacc
     9001 gtaggcccat acctgcgtct gcaccaatgc ggtctgccga aaaaaatggc tttggaactg
     9061 ttcaaaccgt tcattttcca caaattggaa aaacaaggtt tggcctctac cgttaaagca
     9121 gcgaaaaaat tggtagagca agaagtacca gaagtatggg acatcttgga agaagtcatc
     9181 cgcgaacatc cgattatgct gaaccgtgcg ccgaccctgc accgtttggg tattcaagcg
     9241 ttcgaaccta tcttgattga aggtaaagcg attcagttgc acccattggt gtgtgctgcg
     9301 ttcaacgccg actttgacgg cgaccaaatg gcggtacacg ttccattgag cttggaagca
     9361 caaatggaag cacgcacgct gatgctggct tcaaacaacg tattgtctcc tgccaacggc
     9421 gaaccgatta tcgtaccttc ccaagacatc gtattgggcc tgtactacat gacccgcgac
     9481 cgtatcaatg ccaaaggcga gggcagcctg tttgccgatg tgaaagaagt gcatcgcgca
     9541 taccatacca aacaggttga actgggtacg aaaattaccg tacgtctgcg cgaatgggtg
     9601 aaaaacgaag caggtgagtt tgagcctgtc gttaaccgtt acgaaacaac cgtcggccgt
     9661 gcattgttga gcgaaatcct gccgaaaggc ctgccgtttg aatatgtcaa caaagcgttg
     9721 aagaaaaaag aaatttctaa actgattaac gcatcgttcc gcctgtgcgg cttgcgcgat
     9781 acggttatct ttgctgacca cctgatgtac accggtttcg gatttgcggc aaaaggcggt
     9841 atttccattg ccgttgacga tatggaaatt ccaaaagaaa aagtggcctt gctggctgaa
     9901 gccaatgccg aggttaaaga aatcgaagac caataccgtc aaggtttggt taccaacggc
     9961 gaacgctaca acaaggtggt cgatatttgg ggtcgtgccg gcgataagat tgctaaagcg
    10021 atgatggaca acttgtccaa acaaaaagtt atcgaccgtg acggcaacga agtcgatcaa
    10081 gagtcattca actccattta tatgatggcg gactccggtg cccgtggttc tgcagctcag
    10141 attaaacagt tgtccggtat gcgtggcttg atggcaaaac ctgacggctc gattattgaa
    10201 acgccgatta cctcaaactt ccgtgaaggt ctgaccgtat tgcaatactt tattgcgacc
    10261 cacggtgcgc gtaagggttt ggcggatacc gcattgaaaa ccgcgaactc cggttacctg
    10321 acccgtcgtc tggtagacgt aactcaagat ttggtcgttg ttgaagacga ttgcggtact
    10381 tcagacggct ttgtcatgaa ggcagtggta caaggcggtg atgtgattga agcattgcgc
    10441 gagcgtattt tgggccgtgt tactgcgtct gacgttgtcg atccgtcaag cggcgagacc
    10501 ttggttgaag caggcacgtt gttgactgaa aaactggtgg atatgattga ccaatccggt
    10561 gtcgatgaag tcaaagtccg tactccgatt acttgtaaaa cccgccacgg tttgtgcgcg
    10621 cactgttacg gccgcgactt ggcgcgcggc aaactggtca atgccggaga ggcagtcggc
    10681 gtgattgccg cccaatcaat cggcgaaccg ggtacccagc tgactatgcg tacgttccac
    10741 atcggtggtg cggcatcccg tgcggcagca gccagccaag tggaagccaa atccaacggt
    10801 acggcacgat tcagcagcca aatgcgttat gttgccaaca ataaaggcga gttggttgtc
    10861 atcggccgtt cttgtgaagt cgtgattcac gatgacatcg gccgtgaacg cgaacgccac
    10921 aaagtacctt acggtgccat cctgctggta caagacggta tggccattaa agccggtcaa
    10981 accttggcaa cctgggatcc gcatacccgt ccgatgatta ccgaacacgc aggtatggtg
    11041 aaattcgaaa acgtggaaga gggcgttacc gttgccaaac aaaccgatga tgtaaccggt
    11101 ttgtccactt tggtagtgat cgacggtaaa cgtcgttcct ctagtgcttc caaactgctg
    11161 cgtccgactg tgaaactctt ggacgaaaac ggcgtggaaa tctgtattcc cggtacttct
    11221 actccggtat ccatggcatt ccccgttggt gcggtgatta ccgtacgcga aggtcaggaa
    11281 atcggtaaag gcgacgtatt ggcgcgtatc ccgcaagcct cttccaaaac ccgcgacatt
    11341 accggtggtc tgccgcgcgt tgccgaattg tttgaagcac gcgtgccgaa agatgccggt
    11401 atgttggcgg aaattaccgg taccgtttcc ttcggcaaag agaccaaagg caagcaacgt
    11461 ctgattatta ccgacgtgga cggcgtagca tacgagactt tgatttccaa agagaaacag
    11521 attttggtac acgacggtca agtggtaaac cgcggcgaaa ccattgtgga cggcgcggtc
    11581 gatccgcacg atattctgcg tctgcaaggt atcgaagcac tggcacgcta cattgtccaa
    11641 gaggtgcaag aggtttaccg tctgcaaggt gtgaagattt ccgacaaaca catcgaagtc
    11701 atcatccgtc aaatgttgcg ccgtgtgaac attgcggatg ccggcgaaac cggcttcatt
    11761 accggcgagc aggtcgaacg cggcgatgtg atggctgcca atgaaaaagc tttggaagaa
    11821 ggcaaagaac cggcacgtta cgaaaacgta ttgctgggta ttaccaaagc ctccctgtct
    11881 accgacagct tcatttctgc cgcatcgttc caagaaacga cccgcgttct gaccgaagcc
    11941 gcgattatgg gcaaacaaga cgagctgcgc ggtctgaaag agaacgtgat tgtcggtcgt
    12001 ttgattcctg ctggtactgg tttgacttac caccgcagcc gtcatcaaca atggcaagag
    12061 gtggagcagg agactgctga aacccaagta acggatgaat aatctttggt gcgtttattc
    12121 aatacaaaac cgcaagcttt aggcttgtgg tttttctttc agacggcatt taaattatta
    12181 gtgatttcct ttccggtaat agttgtttat gagcataagg gacctaaatg tttatctgaa
    12241 aaaagaaaaa tgatgaatct tcctgatctc acgcttgact gtctgcttgc aataaaaata
    12301 taattccact cttgccgaca tggtgtcggc aagtatttaa ctcaacagga cgagaaaata
    12361 tgccaactat caaccaattg gtacgcaaag gccgtcaaaa gcccgtgtac gtaaacaaag
    12421 tgcccgcact ggaagcctgc ccgcaaaaac gcggcgtgtg cacccgtgta tacacgacta
    12481 cccctaaaaa acctaactct gcattgcgta aagtatgtaa agtccgcctg accaacggtt
    12541 ttgaagtcat ttcatacatc ggcggcgaag gccacaacct gcaagagcac agtgtcgtat
    12601 tgattcgcgg cggtcgtgta aaagacttgc caggtgtgcg ttaccacact gtacgcggtt
    12661 ctttggatac tgcaggcgtt aaagaccgta aacaagcccg ttccaaatac ggtgctaagc
    12721 gtcctaaata attactggga cttaaatagg cacgtcggcc gcctaagctg aacaacggcc
    12781 gagtaagtga atactcaatt gggtattcat gggaatagac ccgactgaat agattaaagg
    12841 aaattaaaat gccaagacgt agagaagtcc ccaagcgcga cgtactgcca gatcctaaat
    12901 tcggcagcgt cgagttgacc aaattcatga acgtattgat gattgacggt aaaaaatccg
    12961 ttgccgagcg tatcgtttac ggtgcgttgg aacagattga gaaaaaaacc ggcaaagtag
    13021 caatcgaagt atttaacgaa gccattgcaa acgccaagcc tatcgtggaa gtgaaaagcc
    13081 gccgtgtagg tggtgcaaac taccaagttc ctgttgaagt tcgtccttca cgccgtttgg
    13141 ctttggcaat gcgctgggtt cgcgatgcgg cccgcaaacg tggtgagaaa tccatggacc
    13201 tgcgtttggc aggcgaattg attgatgcgt ccgaaggtcg tggcggtgcg ttgaaaaaac
    13261 gtgaagaagt acaccgtatg gctgaagcca acaaagcatt ctctcacttc cgtttctaat
    13321 tttgaaaggc taataaaatg gctcgtaaga ccccgatcag cctgtaccgt aacatcggta
    13381 tttccgccca tatcgatgcg ggtaaaacca cgacgacaga acgtattttg ttctatactg
    13441 gtttgaccca caagctgggc gaagtgcatg acggtgcggc tactaccgac tacatggaac
    13501 aagagcaaga gcgcggtatt accattacct ccgctgccgt tacttcctac tggtccggta
    13561 tggcgaaaca attccccgag caccgcttca acatcatcga caccccggga cacgttgact
    13621 ttaccgtaga ggtagagcgt tctatgcgtg tattggacgg cgcggtaatg gtttactgcg
    13681 cggtgggcgg tgttcaaccc caatctgaaa ccgtatggcg gcaagccaac aaataccaag
    13741 tgccgcgctt ggcgtttgtc aataaaatgg accgtcaggg tgccaacttc ttccgcgttg
    13801 tcgagcaaat gaaaacccgt ttgcgcgcaa accctgtacc tatcgtcatt ccggttggtg
    13861 cggaagacaa cttcagcggt gtggttgatt tgttgaaaat gaaatccatc atttggaatg
    13921 aagccgataa aggtacaacc tttacctatg gcgatattcc tgccgaattg gtcgaaactg
    13981 ccgaagaatg gcgtcaaaat atgattgaag ccgcagccga agccagcgaa gaactgatgg
    14041 acaaatactt aggcggcgac gagctgaccg aagaagaaat cgtaggcgcg ttgcgtcaac
    14101 gtactttggc aggcgaaatt cagcctatgc tgtgtggttc tgcatttaaa aacaaaggtg
    14161 ttcaacgtat gttggacgca gttgtagaat tgctgccagc tcctaccgat attcctccgg
    14221 ttcaaggtgt caacccgaat accgaggaag ccgacagccg tcaagccagc gatgaagaga
    14281 aattctctgc attggcgttc aaaatgttga acgacaaata cgtcggtcag ctgaccttta
    14341 tccgcgttta ctcaggcgta gtaaaatccg gcgataccgt attgaactcc gtaaaaggca
    14401 ctcgcgaacg tatcggtcgt ttggtacaaa tgactgccgc agaccgtact gaaatcgaag
    14461 aagtacgcgc cggcgacatc gcagccgcta ttggtctgaa agacgttact accggtgaaa
    14521 ccttgtgtgc ggaaagcgcg ccgattatct tggaacgtat ggaattcccc gagccggtaa
    14581 tccatattgc cgttgagccg aaaaccaaag ccgaccaaga gaaaatgggt atcgccctga
    14641 accgcttggc taaagaagac ccttctttcc gtgtccgtac agacgaagaa tccggtcaaa
    14701 ccattatttc cggtatgggt gagctgcact tggaaattat tgttgaccgt atgaaacgcg
    14761 aattcggtgt ggaagcaaat atcggtgcac ctcaagtggc ttaccgtgaa actatccgca
    14821 aagccgttaa agctgaatac aaacacgcga aacaatccgg tggtaaaggt caatatggtc
    14881 acgttgtgat tgaaatggaa cctatggaac cggggggcga aggttacgag tttatcgatg
    14941 aaattaaagg tggcgtgatt cctcgcgaat tcattccgtc tgtcgataaa ggtatccgcg
    15001 atacattgcc taacggtatc gttgccggct atcctgtagt tgatgtacgt atccgtctgg
    15061 tattcggttc ttaccatgat gtcgactctt cccaattggc atttgaattg gccgcttctc
    15121 aagcgtttaa agaaggtatg cgtcaagcat ctcctgccct gcttgagccg attatggcag
    15181 ttgaagtgga aactccggaa gaatacatgg gcgacgtaat gggcgacttg aaccgccgtc
    15241 gcggtgttgt attgggtatg gatgatgacg gtatcggcgg taaaaaagtc cgtgccgaag
    15301 tacctctggc agaaatgttc ggttattcga ccgacctgcg ttctgcaacc caaggccgcg
    15361 ctacttactc tatggagttc aagaaatatt ctgaagctcc tgcccacata gctgctgctg
    15421 taactgaagc ccgtaaaggc taatcaggca aataggtcgt ctgaaaggct gaaatgattt
    15481 ttcagacggc attgttcttt aatcgatctt taatgtaaag gaattagc
//
LOCUS       DAXIFD010000029        15344 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.029, whole genome shotgun sequence.
ACCESSION   DAXIFD010000029 DAXIFD010000000
VERSION     DAXIFD010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15344
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.029"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(45..602)
                     /locus_tag="ACFOCN_000674"
     CDS             complement(45..602)
                     /locus_tag="ACFOCN_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6969866.1"
                     /translation="MKPKFKTVLTALLLAVSLPSMAATHVLMETDMGNIRLVLDESKA
                     PKTVANFVRYARKGFYDDTVFHRVIDGFVIQGGGFTEDLVQKATDKAVANESGNGLKN
                     TAGTIAMARTADPDSATSQFFINLADNDSLNYKNGQYGYTVFGRVESGMNTVSKIARV
                     KTATHGLYQNVPVQPVKIRRIVVGQ"
     gene            complement(667..1593)
                     /locus_tag="ACFOCN_000675"
     CDS             complement(667..1593)
                     /locus_tag="ACFOCN_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HFC6969867.1"
                     /translation="MSEMKKTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEF
                     GEIGIDGAVLSDNGIPVAEIAGGCLCCTAGPQMGVTVQKMLRDAKPDRLMIEASGLAH
                     AASVIDELKAKPLDSLLEIGAVFTVVNPRQFINPDYAQQALYKDQIGICDVLVASKTD
                     LCTPEQLAEFHDKAAKLFPPKAKVVEVQNAQLDIRWLDIPVIEKSRYRLKALPDNTMG
                     FQSQGFTFPAGRDFDGEKLTNFFNDLPKMTEGLVRAKGVFQVLGTWVWLNWVDGQWGA
                     NQVSWRRDSRFELIAKSFDADLIEQKLKDALE"
     gene            complement(1581..2057)
                     /locus_tag="ACFOCN_000676"
     CDS             complement(1581..2057)
                     /locus_tag="ACFOCN_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HFC6969868.1"
                     /translation="MKTNFKQKIIEQARSEGLQVTALREQVLDIVLQQSGVIKAYNVL
                     SQMQQQSEGVLAPPTAYRALDFWAEQGVLHKVAAVNGYILCSHAQHECDDHCHDHEEA
                     EAHHSAFILVCTECGTADEQTLSHEWAALRAGVAESGFALKEEHVVLTGICKKCQK"
     gene            complement(2128..2583)
                     /locus_tag="ACFOCN_000677"
     CDS             complement(2128..2583)
                     /locus_tag="ACFOCN_000677"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HFC6969869.1"
                     /translation="MKKPKILFVCLGNICRSPMAEYILRRRAAEAGIPLEADSAGTSG
                     WHDGEDMHRETAKILKKHGIDASGFTSRKIRQSDAAAFDCIIAMDGKNLSELERTFGR
                     RPEKIFKLTDLIPESGYDHVPDPWYTGDFEETFRLADAGCRALLEKISK"
     gene            complement(2708..3823)
                     /locus_tag="ACFOCN_000678"
     CDS             complement(2708..3823)
                     /locus_tag="ACFOCN_000678"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HFC6969870.1"
                     /translation="MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDG
                     GEGTVDAIRHSLDLEEKCLQVTGPFGQKEVMRYFQKEQLALFEVADLVGLGKIPLEKR
                     NPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP
                     ACGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFE
                     AVDQAIQDFYEKVSPATLKLKGAGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKV
                     SDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLVEDLPSLPFENIQAA
                     FSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI"
     gene            complement(3937..5034)
                     /locus_tag="ACFOCN_000679"
     CDS             complement(3937..5034)
                     /locus_tag="ACFOCN_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HFC6969871.1"
                     /translation="MNQTFTLPDTRPYPQNPIKNHLLLNAYQLAHNSSQASRKLSSGQ
                     LQTEIRGMLEQNHYINLSLALTMSPDAGTYAALLSSVNAVLDCEKEGEVQWFALPVVL
                     VSGCKKERAIEMKLPTEGLFACLQNYPHLRALTQETQWLPYLVHSSDLSAVAPDEWWR
                     AKQNTEAAAQHLRRFAPRPLLLPEGQSVHVVYALGFGSGKVQTALGQNLLQAGLPLMQ
                     VWQENLASEGVTLFANPLSPDSPVRALSDGSHTRQRMAMDVFAANAIRAVRMQSPRVG
                     VVAAAKAGGQILFGFNATDGAFEVVPQVFSWQLSFTDNIGVIQQNFLDLMAECRVEHV
                     YLLHNPLGEQESIPSYAEALKREGHNPFFSA"
     gene            complement(5116..6699)
                     /locus_tag="ACFOCN_000680"
     CDS             complement(5116..6699)
                     /locus_tag="ACFOCN_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase regulatory domain-containing
                     protein"
                     /protein_id="HFC6969872.1"
                     /translation="MPNKKKKAAFARAATENGVPDVSNIKNSYDDLMYESKAFSQTAI
                     NALEARARMMGLQPAPAANAKVLELGCSMGGNIITQALYYPDAEFVGIDLSGRQVAQG
                     NAIIEKMGLKNVRLEEKDILTVDESFGKFDYIIVHGIWSWVPDAVKDKIFSICRNNLT
                     KHGIAYISYNVYPGWKRQEQLREIMYFAGRDVLEEPLEARTRKGLDALKALAEILEND
                     KGLGGGGKLPAIQKILNHNTYYVAHEYMEIFNDPIYVNGFIEWANRHRLAYIGDTDLH
                     ASFVSWMAEHTRERILALAGGDYIAKEFYSDILSDRQFRRSLLCREEVGDTVRRDESV
                     AVEVIESLNFRPARGETINFDENDTLLSGIRDVMKTGEAFKTEDVAENLARRFPGLTF
                     DRMKINSQLLLQTILGRFSVSSDNAGKQFFEDHKTYVPARFTDYVAAFVEHGAEAFVQ
                     PANRYNESTPSFGYGHLYIMRQLSRPTSKQALIETVAENLNIVSTTPDGLTFHPPAEV
                     YVEEILADLADRHFLVSAD"
     gene            complement(6847..7059)
                     /locus_tag="ACFOCN_000681"
     CDS             complement(6847..7059)
                     /locus_tag="ACFOCN_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HFC6969873.1"
                     /translation="METLILDIGGMSCGGCVKSVTRILEGVKGVASVEVSLENKSATV
                     GYDPAQTDAGALIEAVEDGGYDAALK"
     gene            7405..7560
                     /locus_tag="ACFOCN_000682"
                     /pseudo
     CDS             7405..7560
                     /locus_tag="ACFOCN_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713084.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
     gene            7689..9125
                     /locus_tag="ACFOCN_000683"
     CDS             7689..9125
                     /locus_tag="ACFOCN_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HFC6969874.1"
                     /translation="MPLLSVEFALFFLAFLPIYWGLAKYPSAQNLLLLAAGMGWLYHI
                     GPVFAAIIVLYSSCVYLLGELLRSDRENTRRFWLGCGIAASLTVLGFFKYFDFFRPLI
                     AQYAGKGGAIDILMPLGLSYYTFQSLAYLVYCFRAPHAARFSWHELLLHLSFFPTVTS
                     GPIIRAAAFKSADGEQAGALAQIRTRQPRSPVRPALAVSLILLGIAKKWWLAGMLAEN
                     WVSPVFENPAQFNGWGVLAGVYGYTFQLFLDFSGYSDLVIGMAMLLGFRLPKNFSAPL
                     RAANIRAFWDKWHISLSTWIRDYIYIPLGGSKKGFLRTQLNLMAAMVLSGIWHGYGWN
                     FLIWGALHGTALVLLNTGDRYFGRNALCRLKYLAPLSWFVTFHFVCLSFVVFNTASPD
                     DAGAVFNALFANANGWNAPQQANMLLLASFASVMLLYPYLQRAFDGAVKGLEKIPMWL
                     WFIPISIILLLIIVLAPSGIPGFIYANF"
     gene            9136..10122
                     /gene="patB"
                     /locus_tag="ACFOCN_000684"
     CDS             9136..10122
                     /gene="patB"
                     /locus_tag="ACFOCN_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan O-acetyltransferase PatB"
                     /protein_id="HFC6969875.1"
                     /translation="MKHFLSLFASILMSALIAAWFAQNPINAYWQQTYHRNSPLEPLA
                     AYGWWRSGAALQENAYTLSDGIKAFLSGETPPTAQDGGSADMPPEAAASEAAPQTGEI
                     QEWKQDTDTAAVRSGDKVFFAGDSLMQGVAPFVQKSLKQQYGIESVNLSKQSTGLSYP
                     SFFDWPKTIEETLKKHPEISVLAVFLGPNDPWDFPVGKRYLKFASDEWAQEYLKRVDR
                     ILEAAHTHRVQVVWLGIPYMKKAKLDGQMRYLDKLLSEHLKGKIILIPTAHTLSGGKD
                     RYTDSVNVNGKPVRYRSKDGIHFTAEGQKLLAAKIMEKIVFEPSTQPSSTQP"
     gene            10119..11312
                     /locus_tag="ACFOCN_000685"
     CDS             10119..11312
                     /locus_tag="ACFOCN_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HFC6969876.1"
                     /translation="MNSKHLIAFSALFAATQAEALPVASVSLDTVTVSPSAPYTDTNG
                     LLTDYGNAAASPWMKKLQSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDG
                     GIGWVYPANVKGQRMAAVRHNGNWQSLTSRNNTGDFPLGGILAHTGSGGSMTLTASDG
                     IASKQRVSLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTGAALPLTIHTEMPWDIGFI
                     NIENPAGGITVSAMGINGAQLTQWSKWRADRMNDLAQTGADLVILAYGTNEAFGDNID
                     IADTEQKWLDTVRQIHDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRIA
                     RQGQTMFWSWQNAMGGVCSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRA
                     AAIRQ"
     gene            11561..13114
                     /locus_tag="ACFOCN_000686"
     CDS             11561..13114
                     /locus_tag="ACFOCN_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HFC6969877.1"
                     /translation="MNRTYANFYEMLAAACRKNGNGTAVFDGKEKTAYRALKQEAEAV
                     AAYLQNIGVKFGDTVALAVSNSTEFITAYFAVSAIGAVAVPMNTFLKNSEYAYILNDC
                     KARFLFASAGLSKELAGLKAQTPVEKIIWTDKSRPAGEMAEGDAFFEDVRRFPEKPDL
                     GRQPRINDLAHIIYTSGTTGHPKGALISYANLFANLNGIERIFKISKRDRFIVFLPMF
                     HSFTLTAMVLLPIYMACSIILVKSVFPFSNVLKQALLKRATVFLGIPAIYTAMSKAKI
                     PWYFRWFNRIRLFISGGAPLAEQTILDFKAKFPRAKLLEGYGLSEASPVVAVNTPERQ
                     KARSVGIPLPGLEAKAVDEELVEVPRGEVGELIVRGGSVMRGYLNMPAATDETIVNGW
                     LKTGDFVTIDEDGFIFIVDRKKDLIISKGQNVYPREIEEEIYKLDAVEAAAVIGVKDR
                     YADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFKIPKQIHFKDGLPRNATGKVLKRV
                     LKEQFDGNK"
     gene            complement(13204..15231)
                     /locus_tag="ACFOCN_000687"
     CDS             complement(13204..15231)
                     /locus_tag="ACFOCN_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HFC6969878.1"
                     /translation="MSLSEFIERRTSFNPMVILTTLFFVCVLVVLVLTVPDQAQMWLD
                     RAKEVIFTEFSWFYVLTFSIFLGFLLILSVSSLGNIRLGRDEDVPEFGFLSWLAMLFA
                     AGMGVGLMFFGVAEPLMHYFSDITAGTPEHRQQQALLHTVFHWGVHAWSVYGTIALAL
                     AYFGFRYKLPLALRSCFYPLLKEKISGRFGDAIDIMALLATFFGIITTLGFGASQLGA
                     GLQEMGWIAENSFSVQVLIIAAVMSLAVVSAISGVGKGVKVLSELNLSLAFLLLFFVL
                     AAGPTVYLLSAFGDNIGNYLENLVRLSFKTYAYEREHKPWFESWTVLYWAWWCSWAPF
                     VGLFIARISKGRTIREFVFGVLLIPGLFGVLWFTVFGNTAIWLNDGVAGGMLEKMTSS
                     PETLLFKFFNYLPLPELTSIVSLLVISLFFVTSADSGIYVLNNITSRDKGLSAPRWQA
                     VMWGVLMSAVAVLLMRSGGLGNLQSMTLIVSLPFALLMLIMCFSLWKGLSADKKYFET
                     RVNPTSVFWTGGKWKERLVQIMSQTQEQDILKFLKHTASPAMHELQRELSEEYGLSVR
                     VDKMFHQDEPAIEFVIRKETMRDFMYGIKSVGQDVSDQLINDGNLPHIRHQTTYKPYA
                     YFFDGRVGYDVQYMNKDELIADILKNYERYLMLLDDVGQELMAHEQVELAE"
BASE COUNT         3641 a         4362 c         3779 g         3562 t
ORIGIN      
        1 ttttttgtga aacgggcgac gccgtctgaa catctgtctg cgtgttactg tccgacaaca
       61 atgcgacgga ttttgacggg ctgtacgggt acgttttgat aaaggccgtg cgtggcggtt
      121 ttgacgcggg cgattttgga aacggtgttc atgccgcttt cgaccctgcc gaaaacggta
      181 tagccgtatt gtccgttttt gtagttgagt gaatcattgt ccgccagatt gataaagaat
      241 tggctggtgg cggaatccgg atcggccgtc cgcgccatgg cgatggtacc ggcagtgttt
      301 ttcaagccgt taccggattc gttggcaacg gccttatcgg ttgccttttg taccaagtct
      361 tcggtaaatc cgccgccctg gataacgaaa ccgtcgataa cgcggtgaaa aacggtgtcg
      421 tcgtaaaagc cttttcgggc atagcgcacg aaattagcaa cggttttggg ggctttggac
      481 tcgtccaaaa ccaaacggat attgcccata tcggtttcca tcaaaacatg ggttgccgcc
      541 atagacggca gggaaaccgc caaaagcagc gcggttaaaa cggttttgaa tttgggtttc
      601 atcccgtcct cctcagacct tcagacggca ttttcatttc atatgccgtc tgaaggcgcg
      661 tgaacgctat tccaatgcgt ctttgagctt ttgttcgatt aaatccgcat caaacgattt
      721 ggcaatcaat tcaaaacgcg aatcgcgccg ccatgagact tggttcgcgc cccactgtcc
      781 gtctacccag ttgagccaca cccacgttcc caatacttga aacacgcctt tggcgcggac
      841 gagtccttcg gtcattttgg gcaggtcgtt gaaaaagttg gtcagctttt cgccgtcgaa
      901 atcgcgtccg gcggggaatg tgaaaccttg cgactggaag cccatggtat tatccggcag
      961 ggctttgagg cggtagcgtg atttttcgat gacgggaata tcgagccacc ggatgtcgag
     1021 ttgtgcgttt tggacttcaa ccactttggc tttgggcggg aacagttttg ccgctttgtc
     1081 gtgaaattcg gcaagctgtt cgggggtgca taaatcggtt ttgctggcga ccaatacgtc
     1141 gcagatgccg atttggtctt tatacaacgc ctgttgcgcg taatcggggt tgatgaactg
     1201 gcgcggattg acgacggtaa agacggcgcc gatttccaaa aggctgtcca gcggtttggc
     1261 tttgagttcg tcgatgacgc tggctgcgtg agccagtccg cttgcttcaa tcatcaggcg
     1321 gtcgggcttg gcgtcgcgca gcattttctg cacggttacg cccatttgcg ggccggcggt
     1381 gcaacacaaa cagccgccgg cgatttctgc cacagggata ccgttgtcgc tcaataccgc
     1441 gccgtcaatg ccgatttcgc cgaactcgtt gacgatgatg acccattttt cgttcgggtc
     1501 tttttgcgcc atcaggcttt tgagcgcagt ggttttgcct gttcccagaa aacctgaaat
     1561 caggtggact ttggtttttt tcatttctga cattttttac agattccagt taaaacaacg
     1621 tgttcttctt tcagcgcaaa gccgctttcg gcaacgcctg cgcgcagtgc cgcccactcg
     1681 tggctgaggg tttgctcgtc cgccgtgccg cattcggtgc agaccaaaat aaacgcgctg
     1741 tggtgcgctt cggcttcttc gtggtcgtgg caatggtcgt cgcactcgtg ctgcgcgtgg
     1801 ctgcacaaaa tatagccgtt gaccgccgcc actttgtgca aaacgccctg ctccgcccaa
     1861 aaatcaaggg cgcggtaggc ggtaggcggt gcaagcacgc cctcgctttg ctgctgcatc
     1921 tgcgacaaga cgttgtaggc tttaatcacg ccgctttgct gcaagacaat atctaatacc
     1981 tgctcgcgca aagcggttac ctgcaagcct tcgctgcgtg cctgttcgat aattttctgt
     2041 ttgaaatttg ttttcataaa ttctctgttt atgccgtctg aacaaccgat acggcaggag
     2101 gcggttttat atttgtattc aattgcttta tttggaaatc ttttccaaca atgcccgaca
     2161 gcccgcatcc gcaagcctga aggtttcttc aaaatcgccc gtataccacg gatcggggac
     2221 atggtcgtaa ccgctttcgg gtatcaggtc ggtcagcttg aatatttttt ccggccgcct
     2281 gccgaaggtt ctttccaatt cggacaaatt cttgccgtcc atcgcgatga tgcagtcaaa
     2341 cgccgccgca tcgctttggc ggattttgcg gctggtaaag cctgaagcat cgataccgtg
     2401 ttttttcaat atctttgccg tctcgcggtg catatcttcg ccgtcgtgcc agcccgatgt
     2461 ccccgcgctg tccgcttcaa ggggaatgcc cgcttcggcg gcgcggcggc gcaaaatgta
     2521 ttccgccatc ggcgaacggc agatgttgcc gaggcagaca aaaaggattt tcggtttttt
     2581 catatcccct ccctgttccg gcgcgatgcc gtctgaagcg gaaacccttt cagacgtcat
     2641 cggtcggtta atcgtaaccg cataaggcag aaccagccaa aacatccatc tggaagaaat
     2701 ggtttggcta aatcttaggc atatttaata agtgtccaat attagaagcc gtatgctcca
     2761 aatagagact ggcatttttc aaactatctt ctaaaggttc acttttctcc aaaatagaaa
     2821 aggcagcttg gatattttca aatggcaggg aaggcaaatc ttcaacgaga ctgccacaaa
     2881 tagcgacaac aggaactccg acaggggttc tttttgctac accaataggc gctttccctg
     2941 ctaaactttg acgatctagt cttccttcac caacgataac caagtcaaca tctgacactt
     3001 tcttatcaaa gtcaatcaag tccaggcagg tgtcaattcc agatacgata cttgcctgag
     3061 caaaggcgca caaaccacca gcgatgcctc caccagctcc tgctccttta agttttaatg
     3121 ttgcagggga gactttttca taaaaatctt gtattgcctg atctacggcc tcaaacatag
     3181 tagaatccaa ccctttttgc ttgccaaacg tataggtcgc accttggtgt ccacataagg
     3241 gactcacaac atctgctaaa atacgaatgt gaacatcttc aggaatttta tagcgatttt
     3301 ctgttgaaac agaagctagg tttagtaagg attgaccgca agcgggtaag gcatttccat
     3361 cctcatcata aaattgataa cctaaaccag cagcaatccc aatacctcca tcattactgg
     3421 ccgtaccgcc aacgccaata tagatttctt taatttcttg actaatgagg tggcgaatca
     3481 attctccaat accacgagtt tggatttgta atggatttcg tttctctagc gggatttttc
     3541 caagaccaac caaatcagca acttcgaata gggctagttg ttctttttga aaatagcgca
     3601 tgacttcttt ttgtccaaaa ggtcctgtca cttggagaca tttttcttct aggtcaagag
     3661 aatgtcggat agcatctaca gtgccttctc ccccatcacc gacaggacag aggagacatt
     3721 ccacatctgc tatcgattgt tggaagcctc tttttattgc ttcagctacc tgttgagctg
     3781 tcaagctttc cttaaacgaa tccggtgcaa ttacaatctt catatttata attcatcctt
     3841 tcgtttcact caaggcacaa cacagaatga aaaagtgttg tgctctttat tttgatttat
     3901 tatagaaatg agaaagccta tcactactac aaatcactat gcgctgaaaa acggattgtg
     3961 cccttcccgt ttcaatgctt ccgcatagct cgggatgctt tcctgttcgc ccaagggatt
     4021 gtgcaacagg taaacgtgtt ctacacggca ttctgccatt aaatccaaaa aattttgctg
     4081 aataacgcca atattgtcgg taaaggaaag ctgccacgaa aacacctgcg gcacgacttc
     4141 aaacgcgccg tcggtcgcat taaacccgaa taaaatctgt ccgcccgcct ttgccgctgc
     4201 gaccacgccg acgcgcggac tctgcatacg gacggcgcgt atcgcgtttg ccgcaaacac
     4261 atccatcgcc atgcgctggc gcgtgtggct gccgtcggaa agcgcgcgta ccggagaatc
     4321 cggggaaagc ggattggcaa acagcgtaac gccttccgat gcaagatttt cctgccatac
     4381 ctgcatcaag ggcagacctg cctgaagaag gttctgaccc aatgccgtct gaactttgcc
     4441 gctgccgaaa cccagcgcgt aaacgacgtg gacggactgc ccttcgggca aaagcaaagg
     4501 gcgcggggcg aaacggcgta agtgttgcgc cgccgcttcg gtattttgtt tggcacgcca
     4561 ccactcatcc ggcgcgaccg cactcaaatc ggaggaatgt acaagataag gcagccattg
     4621 cgtctcttgc gtcaacgcgc gcaggtgcgg atagttttgc aaacaggcaa acaatccctc
     4681 cgtcggcagc ttcatctcga ttgcccgttc tttcttgcag ccggacacca gcacgaccgg
     4741 cagggcgaac cactgcactt cgccttcttt ctcgcaatcg agtaccgcgt tcacactgga
     4801 aagcagcgcg gcataagttc cggcatcggg cgacatcgtc agcgcgaggg aaaggttgat
     4861 atagtggttt tgctcaagca tccccctgat ttcggtttga agttggccgg acgagagttt
     4921 gcgcgaagcc tgggaagaat tatgcgccaa ctggtaggca ttgagcagca ggtggttttt
     4981 aatcggattt tggggatacg ggcgcgtatc gggcaaggta aatgtctggt tcatatatgt
     5041 cgtgtaccgc ttttcgcagt gtgtgttttt cctgtttgaa aatatatcgg acggattgcc
     5101 gtcgggactt gcccgtcaat ccgccgaaac gagaaaatgc ctgtctgcca agtctgccaa
     5161 tatttcttcc acatacactt cggcaggcgg atggaatgtc aaaccgtcgg gcgtggtgct
     5221 gacgatgttc aagttttcgg caaccgtttc aatcaatgcc tgtttgctcg tcggccgcga
     5281 caattgccgc ataatgtaca aatgcccgta cccgaatgag ggggtgcttt cgttgtaacg
     5341 gttggcaggc tggacaaacg cttccgcgcc gtgttccaca aaggcggcga cataatctgt
     5401 aaaacgcgcc ggcacatagg ttttatggtc ttcaaaaaat tgtttgcccg cattgtctga
     5461 tgaaacagaa aaacgcccga gaatggtttg caataaaagc tgggaattga ttttcatacg
     5521 gtcgaatgtc aaaccgggaa atcggcgggc gagattttcc gcaacatctt ccgttttaaa
     5581 cgcctctccg gttttcatca catcgcgtat gcccgaaagc agggtatcgt tttcatcaaa
     5641 gttgattgtt tcccctcttg ccgggcggaa attcaaactt tctatcactt cgacggcaac
     5701 cgactcgtca cgcctgacag tatccccgac ttcctcacgg cataaaagcg aacggcggaa
     5761 ttggcggtcg gataaaatat cgctgtaaaa ttctttggca atataatcgc cccctgccaa
     5821 tgccagaatc cgctcccgcg tatgctccgc catccaagaa acaaaagacg cgtgcaaatc
     5881 ggtatccccg atatacgcca gccggtggcg gtttgcccat tcgatgaagc cgttaacgta
     5941 aatcgggtcg ttgaatattt ccatatattc gtgtgcgaca taataagtat tgtgattcaa
     6001 tattttttga atcgccggaa gtttgccgcc gccgcccaag cctttgtcgt tttccaaaat
     6061 ttccgccagc gccttgagcg cgtccaagcc tttccgcgtc cgcgcttcca agggttcttc
     6121 aagcacatcc ctgccggcaa agtacataat ttcgcgcaac tgctcctgcc gtttccagcc
     6181 agggtaaaca ttgtatgaaa tataggcaat gccgtgtttg gtcaggttgt tccggcaaat
     6241 cgaaaagatt ttgtctttaa ctgcgtcagg cacccacgac caaatgccgt ggacgatgat
     6301 atagtcgaac ttcccgaatg actcatcgac ggtcaaaata tctttttctt ccagacgcac
     6361 atttttcaag cccatttttt caatgatggc gttgccctgc gcaacctgcc tgccggacaa
     6421 gtcgataccg acaaattccg catccgggta ataaagagcc tgcgtgatga tgttgccgcc
     6481 catcgaacag cccagctcca agaccttggc attggcggcg ggcgcgggct gcaaacccat
     6541 catgcgggcg cgagcctcca aggcgttgat ggcggtttgg gaaaatgctt tggattcata
     6601 catcaaatca tcatatgaat ttttgatgtt ggacacgtcc ggcacaccgt tctccgttgc
     6661 agcacgcgca aaggcggctt ttttcttttt gttcggcata ttttgtttgt ctgaaggcac
     6721 tattgcccgc aagtttaacc aattcatcct acccgttcaa ctaaatcaaa tgccatctga
     6781 aggcgcggag cgtacttcag acggcatcgg ggaggcgcga aggcttcaga cggcattttt
     6841 gccgctttat ttcaacgcgg catcatagcc gccgtcttca acggcttcaa tcaacgcccc
     6901 tgcatcggtt tgcgcggggt cgtatccgac ggtcgcactt ttgttttcaa ggctgacttc
     6961 gacgcttgcc acgcctttta cgccttccaa tatccgggta acgcttttga cgcagccgcc
     7021 gcagctcatg ccgccgatgt cgaggataag ggtttccatc attttccttt cgttggaact
     7081 gcaatctgac gggcgttatt gtaagtcggg gcgtgaactt gggcaaacgc ggaaacggta
     7141 cggcggtttg gaaaaagacg gacgcttgcg cataatggcg gcaattccca tcaggacgac
     7201 aacaatgaac gcttcacaaa aaccctggtt gagcatcatc gccttggcaa tcggcgcatt
     7261 tatagtggat taacaaaaac cagtacgtcg ttgcctcgcc ttagctcaaa gagaacgatt
     7321 ctctaaggtg ctgaagcacc aagtgaatcg gttccgtact gtttgtactg tctgcggctt
     7381 cgttgccttg tcctgatttt tgttaatcca ctatacaacg tcggtatcgg cagcggcgca
     7441 ctgttgggac attgggtaac gcaatactcg ggcatttcct gcatcggcat tgccggtatg
     7501 ctggtatcgg cggcaggttt gtgggtctgc ctgaatttga accgccatat tcgaacctga
     7561 ccgcgcgatg ccgtctgaag cccctcccgc ccttcagacg gcattttgat tgaagaaata
     7621 tccgcccctg cttaaaataa caggctttgc cgtgttttaa cgcctatttt ttgttccaag
     7681 gatggtttat gccgttgctg tctgtcgagt tcgcactgtt ctttctcgct ttcctgccga
     7741 tttactgggg cttggcgaaa tacccgtccg cccaaaacct gctgcttctg gctgccggta
     7801 tgggctggct ctaccatatc ggccccgtat ttgcggcaat catcgtcctt tattcctcct
     7861 gcgtgtacct tttgggcgaa ctgctccgtt ccgatcgcga aaatacgcgc cgcttttggc
     7921 tggggtgcgg cattgccgcc tcgctgaccg tcttgggctt tttcaaatat ttcgactttt
     7981 tccggccgct gattgcccaa tatgccggaa aaggcggcgc aatcgacatc ctgatgccgc
     8041 tggggctttc gtattacacc ttccagtcgc tcgcctatct tgtttactgc ttccgcgccc
     8101 cgcacgccgc gcgtttcagc tggcacgagc tgctgctgca cctgagtttt ttccccaccg
     8161 ttacctccgg cccgattatc cgcgccgccg cattcaaaag cgcagacggc gagcaggcag
     8221 gcgcattggc gcaaatccgt acccgccaac cgcgctcacc cgtccgcccc gcactcgccg
     8281 tttccctgat tctgctgggt attgccaaaa aatggtggct ggcggggatg ctcgcagaaa
     8341 actgggtgtc gcccgtgttt gaaaaccccg cccaattcaa cggctggggc gtgttggcgg
     8401 gcgtgtacgg ctataccttc caactcttcc tggacttttc cggatattcc gatttggtta
     8461 tcggcatggc gatgctgctg ggcttccgac tgcccaaaaa cttctccgca ccgcttcgtg
     8521 ccgcgaatat ccgtgcattt tgggacaaat ggcacatcag cctttccacc tggatacgcg
     8581 actacatcta catccccttg ggcggcagca aaaaaggctt tttgcggaca cagctcaacc
     8641 tgatggcggc aatggtactc tcaggcatct ggcacggcta cggctggaac ttcctcattt
     8701 ggggcgcgct gcacggcacg gcgctggtgc tgctcaacac gggcgatcgc tatttcggac
     8761 gcaacgcgct atgccgtctg aaataccttg cgccgctctc gtggtttgtt accttccatt
     8821 tcgtctgcct tagctttgtt gtcttcaata ccgcaagccc cgacgatgca ggcgcagttt
     8881 tcaatgccct ctttgccaat gccaacggct ggaatgcgcc gcaacaggca aacatgctgc
     8941 tgcttgcctc gtttgcatcc gtgatgctgc tctaccctta cctgcaacgc gctttcgacg
     9001 gcgcggtcaa aggtttggaa aaaatcccga tgtggctgtg gtttatcccg atttccatca
     9061 tcctgctgct gattatcgtc cttgccccct cggggatacc cggttttatt tatgccaatt
     9121 tttaagggtt tggacatgaa acactttctt tcccttttcg cttccatatt gatgtctgcc
     9181 ctgattgccg cgtggtttgc ccaaaacccg atcaatgcct actggcagca gacctaccac
     9241 cgcaacagcc cgctcgaacc gcttgccgcc tacggatggt ggcggagcgg tgcggcgttg
     9301 caagaaaacg cctacaccct ttcagacggc atcaaagcct tcctgtccgg cgaaacgccg
     9361 ccgacggctc aagacggcgg ttcggcagat atgccgcctg aagccgccgc atccgaagcc
     9421 gcccctcaaa ccggcgaaat ccaagaatgg aaacaggaca ccgacaccgc cgccgtccgc
     9481 agcggcgaca aagtcttttt cgccggcgac tcgctgatgc agggcgttgc acccttcgtg
     9541 caaaaaagcc tgaaacagca atacggcatc gaatccgtca acctcagcaa acaaagcacg
     9601 gggctgtcct acccctcatt cttcgactgg ccgaaaacga ttgaagaaac cctgaaaaaa
     9661 catcccgaaa tcagcgtgct cgccgtcttc ctcggcccga acgacccgtg ggatttcccc
     9721 gtcggcaaac gctacctcaa attcgcttcc gacgaatggg cgcaagaata cctgaaacgc
     9781 gtcgaccgca tccttgaagc cgcacacacg caccgcgtcc aagtcgtctg gctcggcatc
     9841 ccctacatga aaaaagccaa gctcgacggg cagatgcgct acctcgacaa actgctttcg
     9901 gaacatttga aaggcaaaat catcctgatt cccaccgcgc acaccctgag cggcgggaaa
     9961 gaccgctaca cggactccgt caacgtcaac ggcaaacccg tccgctaccg cagcaaggac
    10021 ggcatacact ttaccgccga aggacaaaaa ctgctggcgg caaaaataat ggaaaaaatc
    10081 gtttttgaac caagtacgca accatcaagt acacagccat gaattccaaa cacctcatcg
    10141 cattttccgc cctgttcgcc gccacgcagg cagaagccct gcccgtcgcc tccgtcagcc
    10201 tcgacaccgt taccgtttcc ccgtccgccc cctacaccga tacaaacggg ctcttgaccg
    10261 actacggcaa tgccgccgcc tcgccttgga tgaaaaaact ccaatccgtc gcacaaggca
    10321 gcggcgagac cttccgtatc ctgcaaatcg gcgactcgca taccgccggc gacttcttta
    10381 ccgacagcct gcgcaaacgc ctgcaaaaaa cttggggcga cggcggcata ggctgggttt
    10441 accccgccaa cgtcaaaggg cagcgcatgg cggccgtccg gcacaacggt aactggcaaa
    10501 gcctcaccag caggaacaac accggagact tcccgctcgg cggcatcctc gcccacaccg
    10561 gcagcggcgg cagcatgacc ctgaccgcat cggacggcat agcaagcaag cagcgcgttt
    10621 ccctgtttgc caaacccctg cttgccgaac aaaccctgac cgtcaacggc aacaccgtct
    10681 ccgccaacgg cggcggctgg caggtactgg atacgggcgc ggcactgccc ctgaccatac
    10741 acaccgaaat gccgtgggac atcggcttca tcaacatcga aaatcccgcc ggcggcatta
    10801 ccgtttccgc gatgggcatc aacggcgcac aattaaccca gtggtcgaaa tggcgtgccg
    10861 accgtatgaa cgaccttgcc caaaccggcg ccgatctagt catccttgcc tacggtacca
    10921 acgaagcctt cggcgacaac atcgacattg ccgacactga acaaaaatgg ctggataccg
    10981 tccgccaaat ccacgacagc ctgcctgccg ccggcatcct catcatcggc gcgcccgaat
    11041 ccctgaaaaa cacgctcggc gtatgcggca cacgccccgt ccgcctgacc gaagtccaac
    11101 agatgcagcg gcgcatcgcc cgtcaggggc agacgatgtt ctggtcttgg caaaacgcga
    11161 tgggcggcgt ttgcagcatg aaaaactggc tcaaccaagg atgggccgcc aaagacggtg
    11221 tacacttctc cgccaaaggc taccggcgcg cggcggaaat gctcgccgac agcctcgaag
    11281 aactcgtccg cgccgccgca atcaggcaat aatcggacag gaggcggacg gtatttccgc
    11341 aacaggggga tgccgtctga aacgcatacc ttcatattgc ttcagacggc attcgcctca
    11401 gacattggaa agacgcaggc gaacctccgg catacggcgc aaaggcggcg tttgatatgc
    11461 cgtctgaagg caaagatgat aaactgccgc cttccgtttt catacggcat attgttttca
    11521 aatgagggcg ttcgccgtcc gcaaccataa aggaagtttc atgaaccgga cttatgccaa
    11581 tttctacgaa atgctcgccg ccgcctgccg caaaaacggc aacggcacgg cagtgttcga
    11641 cggcaaggaa aaaaccgcct accgcgcgct caagcaggag gccgaagccg tcgcggcgta
    11701 tctgcaaaat atcggcgtga agttcggcga cacggtcgcg ctggcggttt ccaattccac
    11761 agaatttatt accgcctatt tcgccgtctc cgccatcggc gcggtcgccg taccgatgaa
    11821 cacatttttg aaaaacagcg aatacgcgta tatcctgaac gactgcaagg cgcgcttcct
    11881 gttcgcctcg gcgggcctgt caaaagagtt ggcgggcttg aaggcgcaaa cgcccgtcga
    11941 aaaaatcatt tggacggaca aaagccgtcc ggccggcgaa atggcggaag gcgatgcctt
    12001 ttttgaagac gtgcgccgct tccccgaaaa acccgacttg ggccgccaac cccggataaa
    12061 tgatttggca cacatcatct acacctccgg cacgacgggg catcccaaag gcgcgctaat
    12121 cagttacgcc aacctgttcg ccaacctgaa cggcatcgaa cgcatcttta aaatctccaa
    12181 gcgcgaccgc tttatcgttt tcctgccgat gttccacagc ttcacgctga cggctatggt
    12241 gctgctgccg atttatatgg cgtgttcgat tattttggtc aaatccgttt tcccgttttc
    12301 caacgttttg aaacaggccc tgctcaaacg cgcgaccgtg tttttgggca tacccgcgat
    12361 ttacaccgca atgagcaagg cgaaaatccc ttggtatttc agatggttca accgcattcg
    12421 cctgtttatc agcggcggtg cgcctttggc ggaacaaacc atcctcgatt tcaaagccaa
    12481 gttcccccgc gccaaattgc tggaaggcta cggactgagc gaagcctctc ccgtcgtcgc
    12541 cgtcaatacg cccgagaggc aaaaagcccg cagcgtcggc atccccctgc ccggtttgga
    12601 agccaaagcc gtcgatgaag aattggtcga agtgccgcgc ggcgaagtgg gcgaactgat
    12661 cgtcaggggc ggttcggtga tgcggggcta cctcaatatg cctgccgcca ccgatgaaac
    12721 catcgtcaac ggctggttga aaacgggcga tttcgttacc atagacgaag acggctttat
    12781 ctttatcgtc gaccgcaaaa aagatttgat tatttccaaa ggtcaaaacg tctatccgcg
    12841 cgaaatcgaa gaagaaatct acaaactcga tgccgtcgaa gccgctgccg tcatcggcgt
    12901 gaaagaccgt tatgccgacg aggaaatcgt cgccttcgtc caattgaagg aaggtatgga
    12961 tttgggcgag aacgaaatcc gccgccacct gcgtaccgtg ctggcaaatt tcaaaatccc
    13021 caaacaaatc cactttaaag acgggctgcc gcgcaacgct acgggcaagg tattgaaacg
    13081 ggtgttgaag gagcagtttg acggaaacaa atgaacgccg tgccgtccga agccccgtcc
    13141 ggcaaaaaaa atgcggtgaa tctgcttcac cgcatttttt ggcaaacgcc ggagcgagga
    13201 tatttactct gccaattcca cctgctcgtg cgccatcagt tcctgaccga catcatccaa
    13261 caacatcaaa taacgttcgt agtttttcaa aatgtcggca atcagctcgt ccttgttcat
    13321 atactgcaca tcgtacccga cgcgcccgtc gaaaaaataa gcgtagggtt tgtaagttgt
    13381 ctgatgccgg atatgcggca ggttgccgtc gttaatcaac tggtcggata catcctgccc
    13441 gacagactta atcccgtaca taaaatcgcg catcgtctct ttccgaatga cgaactcgat
    13501 tgcgggctcg tcctgatgaa acatcttatc gacccggacg ctcaagccgt attcttccga
    13561 aagctcccgt tgcaactcgt gcatagcggg cgatgcggta tgtttgagga attttaaaat
    13621 atcctgctcc tgcgtctggc tcattatctg caccagccgt tctttccact tgccgcccgt
    13681 ccaaaataca ctggtagggt taacccgggt ctcaaaatat ttcttatccg cactcaatcc
    13741 tttccacagg ctgaaacaca ttatcagcat cagcagggca aacggcaggg aaacaatcag
    13801 ggtcatagac tgcaggttgc ctagcccgcc cgagcgcatc agcaaaacgg caacggcaga
    13861 catcagcacg ccccacataa ccgcctgcca ccgtggtgcg ctcaagccct tgtcccgaga
    13921 ggtaatattg ttcaggacat aaatcccgga atcggcagaa gttacaaaaa acagggaaat
    13981 gaccagcagg ctgacgatgc tcgtcaattc gggcaggggg aggtaattaa agaatttaaa
    14041 aagcagcgtt tccggagagg aggtcatctt ttcgagcatt ccccccgcaa ccccgtcatt
    14101 cagccaaatc gccgtattgc cgaagacggt aaaccacaaa acgccgaaca ggccggggat
    14161 gagcaaaacc ccgaagacaa actcgcggat ggtgcgcccc tttgaaatgc gcgcgataaa
    14221 caaacccaca aacggcgccc aagaacacca ccacgcccaa taaagcaccg tccaagattc
    14281 aaaccacggc ttgtgttccc gttcgtacgc ataagtttta aaactgaggc gcaccagatt
    14341 ttcgaggtag ttccctatgt tgtcgccgaa tgccgacaac aggtaaacag tggggcccgc
    14401 cgccaaaaca aaaaacagca gcaaaaacgc aaggctcagg ttcaactcgc tcaacacctt
    14461 cacgcccttc cccacgccgg atattgccga aacgacggcg agggacatga cggcggcgat
    14521 aatcaaaacc tgcacgctga agctgttttc ggcaatccag cccatttcct gcaatccggc
    14581 gcccagttgc gaagccccga accccaatgt ggtgatgatg ccgaaaaaag tagcaagcaa
    14641 cgccataata tcaatggcat cgccgaacct tccggaaatt ttttctttca acagggggta
    14701 aaaacaagaa cgcagggcaa gcggcagctt gtagcggaaa ccgaaataag ccaaagccaa
    14761 tgcaatcgta ccgtacaccg accaagcgtg aacgccccaa tggaacaccg tgtgcagcaa
    14821 tgcctgctgc tgcctgtgtt ccggcgtgcc ggccgtaatg tccgaaaaat aatgcatcaa
    14881 cggctctgcc acgccgaaaa acatcagacc cacgcccatc ccggccgcaa acagcatcgc
    14941 cagccacgac aggaagccga attccggcac atcttcatcc cgtccgagcc tgatgtttcc
    15001 caaactgctg accgagagta tcagcaggaa acccagaaaa atggaaaacg ttaaaacata
    15061 aaaccagctg aactcggtaa aaatgacttc ttttgcccga tcgagccaca tctgcgcctg
    15121 atccggcacg gttaaaacca ataccaccaa aacacacaca aaaaacaaag tcgtcaaaat
    15181 aaccatcgga ttaaatgacg ttcggcgttc tataaattca gacagggaca aaccttctca
    15241 ctcctttgtt aaaaacagac aaacccggtc atcgggcaaa gcggtcaaaa cctgccggta
    15301 aaataccggc ttccggatga cgaaatgcac aaaccggccg aaat
//
LOCUS       DAXIFD010000030        15267 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.030, whole genome shotgun sequence.
ACCESSION   DAXIFD010000030 DAXIFD010000000
VERSION     DAXIFD010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15267
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.030"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            265..1140
                     /gene="prpB"
                     /locus_tag="ACFOCN_000688"
     CDS             265..1140
                     /gene="prpB"
                     /locus_tag="ACFOCN_000688"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HFC6969879.1"
                     /translation="MSQHSAGARFRQAVKESNPLAVAGCVNAYFARLATQSGFKAIYL
                     SGGGVAACSCGIPDLGITTMEDVLIDARRITDNVDTPLLVDIDVGWGGAFNIARTIRN
                     FERAGVAAVHIEDQVAQKRCGHRPNKAIVSKDEMVDRIKAAVDARVDENFVIMARTDA
                     LAVEGLDAAIERAQACVEAGADMIFPEAMTDLNMYRQFADAVKVPVLANITEFGSTPL
                     YTQSELAENGVSLVLYPLSSFRAASKAALNVYEAIMRDGTQAAVVDSMQTRAELYEHL
                     NYHAFEQKLDKLFQK"
     gene            1226..2380
                     /gene="prpC"
                     /locus_tag="ACFOCN_000689"
     CDS             1226..2380
                     /gene="prpC"
                     /locus_tag="ACFOCN_000689"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050440 - 2-methylcitrate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HFC6969880.1"
                     /translation="MTETTQTPTFKPKKSVALSGVAAGNTALCTVGRTGNDLSYRGYD
                     ILDLAQKCEFEEVAHLLIHGHLPNKFELAAYKTKLKSMRGLPIRVIKVLESLPAHTHP
                     MDVMRTGVSMLGCVHPERESHPESEARDIADKLIASLGSILLYWYQYSHNGKRIEVES
                     DEETIGGHFLQLLHGKRPSESHIKAMHVSLILYAEHEFNASTFTARVIAGTGSDMYSS
                     ITGAIGALKGPKHGGANEVAYDIQKRYRNADEAEADIRERIGRKEIVIGFGHPVYTIS
                     DPRNVVIKEVARGLSKETGDMRLFDIAERLESVMWEEKKMFPNLDWFSAVSYQKLGVP
                     TAMFTPLFVISRTTGWSAHVLEQRKDGKIIRPSANYTGPEDLAFVEIEER"
     gene            2473..3195
                     /locus_tag="ACFOCN_000690"
     CDS             2473..3195
                     /locus_tag="ACFOCN_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HFC6969881.1"
                     /translation="MDKDKGSYAGIPVQNTKELVWQKIQDIPISECGEPLVSVGNTGR
                     IRVNPVYFSQGIEGAINSVLLRRSVADRLTQVVSLLPEVYGLEIFDGWRPVIVQRALR
                     ENMKQEIEKRHPEYDEVQVREALDCFAADPDRAGMPLPHLTGGSVDVGLFDIKSGKSL
                     DMGSEFDATGHLSYSDALEKEGEYFSSARNLRRILIHAMKEAGFSNLPTEWWHFDYGN
                     QNWAYFTQQSNAVFGAVEEQDT"
     gene            3221..4426
                     /locus_tag="ACFOCN_000691"
     CDS             3221..4426
                     /locus_tag="ACFOCN_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF819 family protein"
                     /protein_id="HFC6969882.1"
                     /translation="MQTLISADNHLLLWAFVMLAAAAAIFIEQNSRLAGKVPGAVLAL
                     LIALIASNLGVIPTDAPVFDAVWSYIVPLAIPLLLFQLDLHALFKESGRMLFIFLISS
                     LGTVIGTLVSFALLKNYIPELDKVAGMISASYTGGGVNFAAMSAKLNPAKDVIAATIV
                     ADNLMMACYFFILIGISSSYWVRKVWGSPYQDKLEQEYHDPSVNKAAEYWKPKSISLQ
                     SIALSLAASILLVAVSFSLSSFLQNHFQSVDGVALKMLTGLISDKYLLLTTFTLAVVL
                     FFRKGIQKLDGSQELGTYCIYLFFVVIGVPASIPLIIKTAPLLFVFTLIIAVLNLLLT
                     LVLGKLFKFSIEEIVLACNANIGGPTTAAALAISKGWRDLVGAILLIGTVGYIIGNYI
                     GSFVYALLS"
     gene            4529..7135
                     /gene="acnD"
                     /locus_tag="ACFOCN_000692"
     CDS             4529..7135
                     /gene="acnD"
                     /locus_tag="ACFOCN_000692"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047456 - 2-methylisocitrate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019679 - propionate metabolic process,
                     methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HFC6969883.1"
                     /translation="MAANQRYRKPLPGTDLEYYDARAACEDIKPGSYDKLPYTSRILA
                     ENLVNRADKVDLPTLQSWLGQLIEGKQEIDFPWYPARVVCHDILGQTALVDLAGLRDA
                     IAEKGGDPAKVNPVVQTQLIVDHSLAVECGGYDPDAFRKNREIEDRRNEDRFHFINWT
                     KTAFENVDVIPAGNGIMHQINLEKMSPVVQVKNGVAFPDTCVGTDSHTPHVDALGVIS
                     VGVGGLEAETVMLGRASMMRLPDIVGVELNGKRKAGITATDIVLALTEFLRKERVVGA
                     FVEFFGEGARSLSIGDRATISNMTPEFGATAAMFAIDEQTIDYLKLTGRDDAQVKLVE
                     TYAKTAGLWADALKTAVYPRVLKFDLSSVTRNMAGPSNPHARFATVDLAAKGLAKPYE
                     EPSDGQMPDGAVIIAAITSCTNTSNPRNVVAAALLARNANRFGLKRKPWVKTSFAPGS
                     KVAEIYLKEAGLLPEMEKLGFGIVAFACTTCNGMSGALDPKIQKEIIDRDLYATAVLS
                     GNRNFDGRVHPYAKQAFLASPPLVVAYALAGSIRFDIENDVLGVADGKEIRLKDIWPA
                     DEEIDAVVAEYVKPQQFRDVYVPMFDTGTAQKAPSPLYDWRPMSTYIRRPPYWEGALA
                     GERTLSGMRPLAILPDNITTDHLSPSNAILASSAAGEYLAKMGLPEEDFNSYATHRGD
                     HLTAQRATFANPKLFNEMVRNEDGSVRQGSLARVEPEGQTMRMWEAIETYMNRKQPLI
                     IIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLQFKPGTNRH
                     TLQLDGTETYDVVGERKPRCDLTLVIHRKNGETVEVPVTCRLDTAEEVLVYEAGGVLQ
                     RFAQDFLEGNAA"
     gene            7488..8657
                     /gene="prpF"
                     /locus_tag="ACFOCN_000693"
     CDS             7488..8657
                     /gene="prpF"
                     /locus_tag="ACFOCN_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HFC6969884.1"
                     /translation="MPQIKIPAVYYRGGTSKGVFFKRSDLPEAAREAGSARDKILLRV
                     LGSPDPYGKQIDGLGNASSSTSKAVILDKSERADHDVDYLFGQVSIDKPFVDWSGNCG
                     NLTAAVGAFAIEQGLVDKGKIPSDGICTVKIWQKNIGKTIIAHVPMQNGAVLETGDFE
                     LDGVTFPAAEVQIEFLDPADGEGSMFPTGNLVDEIDVPNIGRLKATLINAGIPTVFLN
                     AADLGYTGKELQDDINNDAAALEKFEKIRAYGALKMGLISDVSEAAARAHTPKVAFVA
                     PAADYTASSGKTVNAADIDLLVRALSMGKLHHAMMGTASVAIATAAAVPGTLVNLAAG
                     GGTRKEVRFGHPSGTLRVGAAAECQDGQWTATKAVMSRSARVMMEGWVRMPEDCF"
     gene            9071..10270
                     /locus_tag="ACFOCN_000694"
     CDS             9071..10270
                     /locus_tag="ACFOCN_000694"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6969885.1"
                     /translation="MSDQLILVLNCGSSSLKGAVIDRKSGSVVLSCLGERLTTPEAVI
                     TFNKDGNKRQVPLSGRNCHAGAVGMLLNELEKHGLHDRIKAIGHRIAHGGEKYSESVL
                     IDQAVMDELNACIPLAPLHNPANISGILAAQEHFPGLPNVGVMDTSFHQTMPERAYTY
                     AVPRELRKKYAFRRYGFHGTSMRYVAPEAARILGKPLEDIRMIIAHLGNGASITAIKN
                     GKSVDTSMGFTPIEGLVMGTRCGDIDPGVYSYLTSHAGMDVAQVDEMLNKKSGLLGIS
                     ELSNDCRTLEIAADEGHEGARLALEVMTYRLAKYIASMAVGCGGVDALVFTGGIGENS
                     RNIRAKTVSYLDFLGLHIDTKANMEKRYGNSGIISPTDSSPAVLVVPTNEELMIACDT
                     AELAGIL"
     gene            10378..10998
                     /locus_tag="ACFOCN_000695"
     CDS             10378..10998
                     /locus_tag="ACFOCN_000695"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6969886.1"
                     /translation="MAQFFAVHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKL
                     GDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPGPYTFILQ
                     ATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
                     RERLEHAVDLVIDGGWCGTEPTTVVDMTDGTELVRQGCGDTAVFGL"
     gene            complement(11125..11568)
                     /locus_tag="ACFOCN_000696"
     CDS             complement(11125..11568)
                     /locus_tag="ACFOCN_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HFC6969887.1"
                     /translation="MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKV
                     VTALVKGGFLHSVRGKGGGLRLAAPPDRINIGSVVRHLEPMQLVECMGENNECLITPS
                     CRLTGILGGAMKSFFTYLDGFTLQDLLNKPTYDLLYEPRIPIAVQ"
     gene            11742..12110
                     /locus_tag="ACFOCN_000697"
     CDS             11742..12110
                     /locus_tag="ACFOCN_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6969888.1"
                     /translation="MKPLKRHPALIGLSRDHHHSLSLCVRLLRTPEERHRDELEPHFS
                     ELETHFREEEAKFAPIWQNVAPELKQRFEKDHARLRQMMASPEYGNAAWNTAFATTLR
                     DHARFEERELFPAAEPFLPA"
     gene            12155..13309
                     /locus_tag="ACFOCN_000698"
     CDS             12155..13309
                     /locus_tag="ACFOCN_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6969889.1"
                     /translation="MKFTKHPVWAMAFRPFYSLAALYGALSVLLWGFGYTGTHELSGF
                     YWHAHEMIWGYAGLVVIAFLLTAVATWTGQPPTRGGVLVGLTIFWLAARIAAFIPGWG
                     ASASGILGTLFFWYGAVCMALPVIRSQNQRNYVAVFALFVLGGTHAAFHVQLHNGNLG
                     GLLSGLQSGLVMVSGFIGLIGTRIISFFTSKRLNVPQIPSPKWVAQASLWLPMLTAML
                     MAHGVMPWLSAAFAFAAGVIFTVQVYRWWYKPVLKEPMLWILFAGYLFTGLGLIAVGA
                     SYFKPAFLNLGVHLIGVGGIGVLTLGMMARTALGHTGNPIYPPPKSVPFAFWLMMAAT
                     AVRMVAVFSSGTAYTHSIRTSSVLFALALLVYAWKYIPWLIRPRSDGRPG"
     gene            complement(13366..14238)
                     /locus_tag="ACFOCN_000699"
     CDS             complement(13366..14238)
                     /locus_tag="ACFOCN_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HFC6969890.1"
                     /translation="MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLER
                     ALERGVIDRASVAIDADSIGGADLVLIATPVATFPAILTALRPVLPEHTWISDVGSTK
                     SSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGI
                     ALVEELWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAA
                     TGFRDFTRIASGHPAVWADICIANKDSLLQLVQGLGKQLDVLADILTADDREALYRYF
                     EEAKTTRDRWLDGN"
     gene            14323..15135
                     /locus_tag="ACFOCN_000700"
     CDS             14323..15135
                     /locus_tag="ACFOCN_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HFC6969891.1"
                     /translation="MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGVDWVLLPEY
                     WVLMGANDTDKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEAGKVMNTLL
                     VYGRDGKRTGLYHKMHLFGFSGLGERYAEADTIRAGGDVPHLSAEGVSVAAGICYDVR
                     FPEFFRRQLPFDVLMLPAAFTHTTGKAHWELLLRARAVENQCYVVAAAQGGLHENGRR
                     TFGHSMIVDPWGDVLDVLPEGEGVVTADIDANRLNSVRNRLPALKYRVLDAV"
BASE COUNT         3550 a         3932 c         4191 g         3594 t
ORIGIN      
        1 ggaacattac tatgaaacca attcagatgt tttccccttt tctgaataat ccccttgttt
       61 tcttcttgtc tgcggttttg ccgcataatt ccgaacggtc tgctgttttt ctttgattcg
      121 ttttaaatat caataagata atttttccca tatattttta atgattggat tgggatgccc
      181 gacgcgtcgg atggctgtgt tttgccgtcc gaatgtgatg gaagcctgtc catactgaaa
      241 aaaagtctat aaaggagaaa tatgatgagt caacactctg ccggagcacg tttccgccaa
      301 gccgtgaaag aatcgaatcc gcttgccgtc gccggttgcg tcaatgctta ttttgcacga
      361 ttggccaccc aaagcggttt caaagccatc tatctgtccg gcggcggcgt ggcagcctgt
      421 tcttgcggta tccctgattt gggcattacc acaatggaag atgtgctgat cgacgcacga
      481 cgcattacgg acaacgtgga tacgcctctg ctggtggaca tcgatgtggg ttggggcggt
      541 gcattcaata ttgcccgtac cattcgcaac tttgaacgcg ccggtgttgc agcggttcac
      601 atcgaagatc aggtagcgca aaaacgctgc ggccaccgtc cgaacaaagc cattgtatct
      661 aaagatgaaa tggtcgaccg tatcaaagct gccgtagatg cgcgcgttga tgagaacttc
      721 gtgattatgg cgcgtaccga tgcgctggcg gtagaaggtt tggatgccgc tatcgaacgc
      781 gcccaagctt gtgtcgaagc cggtgcggac atgattttcc ctgaagccat gaccgatttg
      841 aacatgtacc gccaatttgc agatgcggtg aaagtgcccg tgttggcgaa cattaccgag
      901 tttggttcca ctccgcttta tacccaaagc gagctggctg aaaacggcgt gtcgctggtg
      961 ctgtatccgc tgtcatcgtt ccgtgcagca agcaaagccg ctctgaatgt ttacgaagcg
     1021 attatgcgcg atggcactca ggcggcggtg gtggacagta tgcaaacccg tgccgagctg
     1081 tacgagcatc tgaactatca tgccttcgag caaaaactgg ataaattgtt tcaaaaatga
     1141 tttaccgctt tcagacggtc tttcaacaaa tccgcatcgg tcgtctgaaa acccgaaacc
     1201 cataaaaaca caaaggagaa ataccatgac tgaaactact caaaccccga ccttcaaacc
     1261 taagaaatcc gttgcgcttt caggcgttgc ggccggtaat accgctttgt gtaccgttgg
     1321 ccgtaccggc aacgatttga gctatcgcgg ttacgacatc ttggatttgg cacaaaaatg
     1381 cgagtttgaa gaagtcgccc acctgctgat tcacggtcat ctgcccaaca aattcgagct
     1441 ggccgcttat aaaaccaagc tcaaatccat gcgcggcctg cctatccgtg tgattaaagt
     1501 tttggaaagc ctgcctgcac atacccatcc gatggacgta atgcgtaccg gcgtatccat
     1561 gctgggctgc gttcatcctg aacgtgaaag ccatccggaa agtgaagcgc gcgacatcgc
     1621 cgacaaactg atcgccagcc tcggcagcat cctcttgtac tggtatcaat attcgcacaa
     1681 cggcaaacgc attgaggttg aaagcgacga agagaccatc ggcggtcatt tcctgcaact
     1741 gttgcacggc aaacgcccaa gcgaatcaca catcaaagcc atgcacgttt cactgattct
     1801 gtatgccgaa cacgagttca acgcttctac ctttaccgcc cgcgtgatcg ccggtacagg
     1861 ctctgatatg tactccagca ttaccggagc aatcggcgcg ttgaaaggtc cgaaacacgg
     1921 cggcgcgaac gaagtggctt acgatattca aaaacgctac cgcaatgccg acgaagctga
     1981 agccgacatc cgcgaacgca tcggccgcaa agaaatcgtg atcggtttcg gtcatccggt
     2041 gtataccatt tccgaccccc gcaacgttgt cattaaagaa gtggcacgcg gtttgagcaa
     2101 agaaaccggc gatatgcgcc tctttgacat tgccgaacgt ttggaaagcg tgatgtggga
     2161 agagaaaaaa atgttcccga atctggactg gttctctgcc gtttcctacc aaaaattggg
     2221 cgtaccgacc gctatgttca caccgctgtt cgtaatttcc cgtacaaccg gttggagcgc
     2281 acacgttctt gagcaacgca aagacggcaa aatcatccgt ccgagcgcaa actacacggg
     2341 ccctgaagat ttggcgtttg tggagattga agaacgctga tgattttcag acgaccttgt
     2401 ttgtacaagg tcgtctgaaa aaagaaattt aatgaattta ttggcacact aattattaat
     2461 gcggaacatt tgatggataa ggacaagggg tcttatgcgg gtattcctgt acaaaatacc
     2521 aaagagttag tttggcagaa aatacaagac atacctattt ctgaatgtgg ggaaccgttg
     2581 gtcagtgttg gtaataccgg acgcattcgt gtcaatcctg tttatttttc tcagggtatt
     2641 gaaggggcga taaatagtgt tttattgcgt agaagtgttg ctgataggct gactcaggtt
     2701 gtctctttgc tgccggaagt gtacgggttg gaaatttttg atggttggcg tcctgtcata
     2761 gtgcaaagag cattacgaga aaatatgaag caagaaattg aaaaacgcca tccggaatat
     2821 gatgaagttc aagttagaga agcactggac tgttttgctg ctgatccaga tcgggcagga
     2881 atgcctctgc cccatttgac aggcggatct gttgatgtcg gattgtttga tataaaaagt
     2941 ggcaaaagtt tggatatggg aagtgagttt gatgcaactg gacatttatc ttatagcgat
     3001 gctttagaga aagaaggtga gtatttctcc tctgctcgta atttacgccg gattttgatt
     3061 catgcgatga aagaggcagg atttagtaat ttgccaaccg aatggtggca tttcgattat
     3121 ggcaaccaaa attgggctta ttttacccaa caaagcaacg cagtttttgg ggcggtagaa
     3181 gagcaggata cttaaattaa aataaaaatt gggaggaaaa atgcaaactt taatttcagc
     3241 agataatcat ttgctgctgt gggcttttgt tatgttagct gccgctgctg cgatttttat
     3301 tgagcaaaac agtcgcttgg ctgggaaagt ccctggtgca gtattagctt tattgattgc
     3361 gttgattgct tctaatttgg gtgttattcc gacggatgct ccagtatttg atgctgtatg
     3421 gtcttatatt gtacctcttg ctattccgtt gttattgttt caattagatc ttcatgctct
     3481 atttaaggaa agtggacgta tgctgtttat tttcctgatt agttcactag ggacggtcat
     3541 tggaacgctt gtctcatttg cactattgaa aaactatatt cctgaactag ataaggtagc
     3601 tggcatgatt tcagcatctt atacgggagg tggtgttaat tttgcagcta tgtcagctaa
     3661 gcttaaccct gctaaagatg ttattgcagc aacaattgtt gctgataatt tgatgatggc
     3721 ttgttacttt tttattttga ttggtatctc ttcctcatat tgggtcagaa aagtttgggg
     3781 aagtccatat caggataaat tggagcagga atatcatgat ccgagtgtga ataaggctgc
     3841 cgagtattgg aaacctaaat ccatttcgct acagagtata gccttatctt tggctgcctc
     3901 gattttgttg gtcgcagttt cattctcatt atccagtttt ttgcaaaatc attttcaaag
     3961 tgttgatggt gttgcattaa aaatgctgac aggtttaatt agtgacaaat atttgctgtt
     4021 aacgacattt acattggcag ttgttttatt tttccgtaaa ggcattcaaa aactagatgg
     4081 cagtcaagaa ttagggacat attgtattta tctgtttttt gttgtgattg gtgttcctgc
     4141 ctctataccg ttaattatta aaacagcacc attactcttt gtttttactt tgattattgc
     4201 ggtattgaat ttgttactga cgttagtgtt aggcaagctg ttcaaattca gtattgaaga
     4261 aattgtattg gcttgtaatg ccaatattgg agggccgact actgcagcag ccttagccat
     4321 cagtaaaggt tggcgtgatt tagtcggtgc aattttgtta attggtactg taggctacat
     4381 tatcggtaac tatataggtt cgtttgtata tgccctattg agctgaagac taatctaaca
     4441 atccatgaac attttcagac gacccccttc caaaaacgtc ggctgaaacc tcaaaccaca
     4501 agaaaaacag atccccagga gaaccgacat ggctgccaac caacgttacc gcaaaccgct
     4561 gcccggtacg gatttggaat actacgacgc gcgtgcggcg tgtgaggaca tcaagcccgg
     4621 ctcttacgac aagctgcctt atacaagccg tatcttggct gagaacttgg tcaaccgcgc
     4681 ggacaaagtc gatttgccga cgctgcaaag ctggctgggc cagttgatag aagggaagca
     4741 ggaaatcgac tttccgtggt atcccgcgcg ggtggtgtgc cacgatattc tggggcagac
     4801 cgcgctggtg gatttggcgg gcttgcgcga tgcgattgcc gaaaaaggcg gcgatcctgc
     4861 caaagtgaat ccggtggtgc aaacccagct tatcgtcgac cactctctgg cggtggagtg
     4921 cggcggttac gatcctgatg ccttccgcaa aaaccgcgaa atcgaagatc gacgcaacga
     4981 agaccgtttc cacttcatca actggacaaa aaccgcgttt gaaaatgtgg acgtgattcc
     5041 ggcgggcaac ggcatcatgc accaaatcaa tctagaaaaa atgtcgccgg ttgttcaagt
     5101 taaaaacggc gtggctttcc ccgatacctg cgtcggcacg gattcgcaca cgccgcacgt
     5161 cgatgcgctg ggcgtgattt ccgtgggcgt gggcggattg gaagcggaaa ccgtaatgct
     5221 gggacgcgcg tccatgatgc gcctgcccga tattgtcggc gttgagctga acggcaaacg
     5281 gaaggcgggc attacggcga cggatattgt gttggcactg accgagtttc tgcgcaaaga
     5341 acgcgtggtc ggggcgtttg tcgaattctt cggcgagggc gcgagaagcc tgtctatcgg
     5401 cgaccgcgcg accatttcca acatgacgcc ggagttcggc gcgactgccg cgatgttcgc
     5461 tattgatgag caaaccattg attatttgaa actgaccgga cgcgacgacg cgcaggtgaa
     5521 attggtggaa acctacgcca aaaccgcagg cttgtgggca gatgccttga aaaccgccgt
     5581 ttatcctcgc gttttgaaat ttgatttgag cagcgtaacg cgcaatatgg caggtccaag
     5641 taacccgcat gcccgttttg ccaccgtcga tttggcggcg aaagggctgg cgaagcctta
     5701 cgaagagcct tcagacggac aaatgcccga cggcgcggtc atcatcgccg cgattaccag
     5761 ttgcaccaac acttccaacc cgcgcaacgt cgttgccgcc gcgctcttgg cgcgcaacgc
     5821 caaccgcttc gggctgaaac gcaaaccgtg ggtcaaaacc tcgtttgccc ccggttcgaa
     5881 agtggcggaa atttatttga aagaagcagg cctgctgccc gaaatggaaa aactcggctt
     5941 cggtatcgtc gccttcgcct gcaccacctg caacggcatg agtggcgcgc tggatccgaa
     6001 aatccagaaa gaaatcatcg accgcgattt gtacgccacc gccgtattat caggcaaccg
     6061 caacttcgac ggccgtgtcc atccgtatgc gaaacaggct ttcctcgctt cgcctccgtt
     6121 ggtcgttgcc tacgcgctgg caggcagtat ccgtttcgat attgaaaacg acgtactcgg
     6181 cgttgcagac ggcaaggaaa tccgcctgaa agacatttgg cctgccgatg aagaaatcga
     6241 tgccgtcgtt gccgaatatg tgaaaccgca gcagttccgc gatgtgtatg taccgatgtt
     6301 cgacaccggc acagcgcaaa aagcacctag tccgctgtac gattggcgtc caatgtccac
     6361 ctatatccgc cgcccacctt actgggaagg cgcattggca ggggagcgca cattgagcgg
     6421 tatgcgtccg ctggcgattt tgcccgacaa catcaccacc gaccacctct cgccatccaa
     6481 tgcgattttg gcaagcagtg ccgcaggcga atatttggcg aaaatgggtt tgcctgaaga
     6541 agacttcaac tcttacgcaa cccaccgcgg cgaccacttg accgcccaac gcgcaacctt
     6601 tgccaatccg aaactgttta acgaaatggt gagaaacgaa gatggcagtg tacgccaagg
     6661 ttcgctggca cgcgttgaac ccgaaggcca aaccatgcgc atgtgggaag ccatcgaaac
     6721 ctatatgaac cgcaaacagc cgctcatcat cattgccggt gcggactacg gtcaaggctc
     6781 aagccgcgac tgggctgcaa aaggcgtacg cctcgccggt gtggaagcga ttgttgccga
     6841 aggcttcgag cgtatccacc gtaccaactt gatcggtatg ggcgtattgc cgctgcagtt
     6901 caaaccgggt accaaccgcc acaccttgca actggacggt acggaaacct acgacgtggt
     6961 cggtgaacgc aaaccgcgct gcgatctgac cctcgtgatt caccgtaaaa acggcgaaac
     7021 cgtcgaagtt cccgttacct gccgcctcga tactgcagaa gaagtattgg tatatgaagc
     7081 cggcggcgtg ttgcaacggt ttgcacagga ttttttggaa gggaacgcgg cttagaggtc
     7141 gtctgaaaag caagacgtag cgtgggtcgg gttcaacatt ttgctcattc acgtaattct
     7201 cgatatggca ggcatctact gtaaatcgtc attcccgcgc aggcgggaat ccagaaagtg
     7261 gaattgagga aaccttattt atccgatgag tttctgtgcg gacaaatttg gattcccgcc
     7321 tgcgcgggaa tgacggggtt taataatctg ccgtatcaca acacagtagc cgtagattgt
     7381 ggcgaacccc gacagtttgc ggaatcaaac ggctttggtc ggagtggcag cctaatccac
     7441 tataaaaatc gtgggcagag cccacgctac ataaggagaa tctagaaatg ccgcaaatta
     7501 aaattcccgc cgtttactac cgtggcggta catcaaaagg cgtgtttttc aaacgttccg
     7561 acctgcccga ggcggcgcgg gaagcgggca gcgcacgcga caaaatcctc ttgcgcgtac
     7621 tcggcagccc ggatccctac ggcaagcaga tagacggttt gggcaacgcc agctcgtcca
     7681 ccagcaaggc ggtgattttg gacaagtccg aacgcgccga tcacgatgtc gattaccttt
     7741 tcgggcaagt ttccatcgac aaaccttttg tcgattggag tggcaactgc ggcaacctca
     7801 ccgccgccgt gggcgcattt gccatcgagc aaggcttggt cgataaaggc aagattcctt
     7861 cagacggcat ctgcacggtc aaaatctggc agaaaaacat cggcaaaacc attattgccc
     7921 atgtaccgat gcaaaacggc gcagttttgg aaacaggcga ttttgagctc gacggcgtaa
     7981 cgttcccggc agccgaagta caaatcgaat ttcttgatcc agccgacggt gaaggcagta
     8041 tgttcccaac cggcaatttg gtcgatgaaa ttgatgtgcc gaatataggc cgtttgaaag
     8101 ccacgctcat caacgcgggc attccgaccg ttttcctgaa tgccgccgac ttgggctaca
     8161 cgggcaaaga gttgcaagac gacatcaaca acgatgccgc ggctttggaa aaattcgaga
     8221 aaatccgcgc ttacggtgcg ctgaaaatgg gtctgatcag cgacgtatcc gaagctgccg
     8281 ctcgcgcgca cacgccgaaa gtcgccttcg tcgcgcccgc cgccgattac accgcctcca
     8341 gtggcaaaac cgtgaatgcc gccgacatcg atttgctggt acgcgccctg agcatgggca
     8401 aattgcacca cgcgatgatg ggtaccgcct ctgttgccat tgcgaccgcc gccgccgtgc
     8461 ccggtacgct ggtcaacctt gccgcaggcg gcggaacgcg taaagaagtg cgcttcgggc
     8521 atccttccgg cacattgcgc gtcggtgcag ccgccgaatg tcaggacgga caatggacgg
     8581 ccaccaaagc ggttatgagc cgcagcgcac gcgtgatgat ggaaggttgg gtcaggatgc
     8641 cggaagattg tttttaaatt gacgtagcat gggtttgccc gcgagccata aacaggtcgt
     8701 ctgaaaaaca agtaaacatc aaatcactga ccattccttt cccttgccct gtggcggaag
     8761 gcggcaaatc acaaggaaga acacggaaac cccgataaaa gacagcttcc cgtattaccg
     8821 tcattcccgc gcaggcggga atctagacct gtcaatatgg aggattggta ggggaaaaca
     8881 ggtttcgtga gttctacatt ctggattccc gccacagcct gtcctcgcgt aggcggggac
     8941 ggaataacga tagaaaatgc ggcatacgct ttgcccaaag aggccgtctg aaacaccttg
     9001 cgcctgatgt ctgccttttt cagacgaccc cacaccaaaa aaacaaccac aaactacaag
     9061 gagaaacatc atgtccgacc aactcatcct cgttctgaac tgcggcagtt catcgctcaa
     9121 aggcgccgtt atcgaccgaa aaagcggcag cgtcgtccta agctgcctcg gcgaacgcct
     9181 gaccacgccc gaagccgtca ttacgttcaa caaagacggc aacaaacgcc aagttcccct
     9241 gagcggccga aattgccacg ccggcgcggt gggtatgctt ttgaacgaac tggaaaaaca
     9301 cggtctgcac gaccgcatca aagccatcgg ccaccgcatc gcccacggcg gcgaaaaata
     9361 cagcgagtct gttttgatcg accaggccgt aatggacgaa ctcaatgcct gcattccgct
     9421 tgcgccgctg cacaaccccg ccaacatcag cggcatcctt gccgcacagg aacatttccc
     9481 cggtctgccc aatgtcggcg tgatggatac ttcgttccac caaaccatgc cggagcgtgc
     9541 ctacacttat gccgtgccgc gcgagttgcg taaaaaatac gctttccgcc gctacggttt
     9601 ccacggcacc agtatgcgtt acgttgcccc tgaagccgca cgcatcttgg gcaaaccttt
     9661 ggaagacatc cgcatgatta ttgcccactt aggcaacggc gcatccatta ccgccatcaa
     9721 aaacggcaaa tccgtcgata ccagtatggg tttcacgccg atcgaaggtt tggtaatggg
     9781 tacacgttgc ggcgacatcg atccgggcgt atacagctat ctgacttccc acgccgggat
     9841 ggatgttgcc caagtggatg aaatgctgaa caaaaaatca ggtttgctcg gtatttccga
     9901 actttccaac gactgccgca ccctcgaaat cgccgccgac gaaggccacg aaggcgcgcg
     9961 cctcgccctc gaagtcatga cctaccgcct cgccaaatac atcgcttcga tggctgtggg
    10021 ctgcggcggc gttgacgcac tcgtgttcac cggcggtatc ggcgaaaact cgcgtaatat
    10081 ccgtgccaaa accgtttcct atcttgattt cttgggtctg cacatcgaca ccaaagccaa
    10141 tatggaaaaa cgctacggca attcgggcat tatcagcccg accgattctt ctccggctgt
    10201 tttggttgtc ccgaccaatg aagaactgat gattgcctgc gacactgccg aacttgccgg
    10261 catcttgtag ccaaaaaagg gacgagtccg caaaaatgcc gtctgaaatt ttcagacggc
    10321 attttgtttg gcgtttgggc gtacaatacg gaaaacatga cgataaggaa acaaaccatg
    10381 gcacagtttt tcgccgttca tcccgacaac ccccaagaac gcctcatcaa gcaggcggtc
    10441 gaaatcgtca ataaaggcgg cgtggtcgtt tatccgaccg attcctgtta tgccttgggc
    10501 tgcaaactcg gcgataaggc ggcgatggaa cgcatactct ccatccgcaa aatcgatttg
    10561 aaacaccacc tgaccctgat gtgcgcagat ttgagcgagt tgggcacata cgccaaagtc
    10621 gacaacgtac agtttcgtca gcttaaagcc gccacacccg ggccttatac ttttatttta
    10681 caggcgacga aggatgtgcc ggcgcgcacg ctgcacccga aacgcaaaac catcgggctg
    10741 cgtattcccg ataatgccat tgcacaagcc ctgctggggg aattgggcga gccgctttta
    10801 agctgcaccc tgatgctgcc cgaagacggc gaaccattga ccgatcctta tgaaatccgc
    10861 gagcgtttgg aacacgccgt cgatttggtg attgacggcg gctggtgcgg aaccgagccg
    10921 accaccgtcg tcgatatgac cgacggcacg gaattggtgc gccaaggttg cggcgatacg
    10981 gcggtgttcg gtttgtaggg aaaccgatgc cgtctgaagc atcggctgtt cagacggcat
    11041 tgcgcgcctt gccggcggca gtccgaaatg ccggcgcgta tcgcgctcgg tcggaatatc
    11101 cgtttgaaac ggcattttga tgcattactg caccgcaatc ggaattctcg gttcgtagag
    11161 caggtcgtag gtcggcttgt tgagcaggtc ttggagcgtg aaaccgtcca gatacgtgaa
    11221 aaacgacttc atcgcgccgc cgagtatgcc cgtcagccgg caggacggtg taatcaggca
    11281 ttcgttgttc tcgcccatgc actcgaccag ctgcatcggt tcgaggtggc ggacaaccga
    11341 gccgatgttg atgcggtcgg gcggtgcggc aagccgcaga ccgccgcctt ttccgcgcac
    11401 actgtggagg aagccgcctt tgaccagcgc ggtaacgacc ttcatcagat ggcttttgga
    11461 aatgccgtag gttacggcga tggtactgat gttgaccagc gcatcgtcgt tgatggcagt
    11521 gtagataagg acgcgcagcc cgtagtccgt atgttgtgtc aaatacatga ttttctcggt
    11581 atggattgtt attcttatcg gtacggttta aggttcacgg acaatacctt aatggttgaa
    11641 accctgtccg tcggggcggt agaatgcagc ctgtctgcgg cggtatgccg tctgaaacat
    11701 ccgcgctacc gtttgataat ttgttattgt aactcaaaat catgaaaccg ttgaaacgac
    11761 atcccgccct tatcgggctt tcgcgtgacc accaccattc gctttccctg tgcgtgcgtc
    11821 tgttgcggac gccggaagaa aggcatcggg acgaactcga accgcatttt tccgaattgg
    11881 aaacccattt tcgcgaagaa gaagccaagt ttgccccaat ttggcagaat gtcgcccccg
    11941 aattgaaaca acgtttcgag aaagaccacg cccgactgcg gcagatgatg gcaagccccg
    12001 aatacggtaa cgcggcgtgg aataccgctt ttgccacaac cctgcgcgac cacgcgcgct
    12061 ttgaagaacg cgagctgttt cccgccgccg aaccgttttt gccggcatga ttccgttttg
    12121 cggcaaatat attaatgata aacaaggaac acacatgaaa tttaccaagc accccgtctg
    12181 ggcaatggcg ttccgcccat tttattcgct ggcggctctg tacggcgcat tgtccgtatt
    12241 gctgtggggt ttcggctaca cgggaacgca cgagctgtcc ggtttctatt ggcacgcgca
    12301 tgagatgatt tggggttatg ccggactggt cgtcatcgcc ttcctgctga ccgccgtcgc
    12361 cacttggacg gggcagccgc ccacgcgggg cggcgttctg gtcggcttga ctatcttttg
    12421 gctggctgcg cggattgccg cctttatccc gggttggggt gcgtcggcaa gcggcatact
    12481 cggtacgctg tttttctggt acggcgcggt gtgcatggct ttgcccgtta tccgttcgca
    12541 gaatcaacgc aattatgttg ccgtgttcgc gctgttcgtc ttgggcggta cgcacgcggc
    12601 gttccacgtc cagctgcaca acggcaacct aggcggactc ttgagcggat tgcagtcggg
    12661 cttggtgatg gtgtcgggtt ttatcggtct gattggtacg cggattattt cgttttttac
    12721 gtccaaacgg ttgaatgtgc cgcagattcc cagtccgaaa tgggtggcgc aggcttcgct
    12781 gtggctgccc atgctgaccg ccatgctgat ggcgcacggc gtgatgcctt ggctgtcggc
    12841 ggctttcgcg tttgcggcag gtgtgatttt taccgtgcag gtgtaccgct ggtggtataa
    12901 gcctgtgttg aaagagccga tgctgtggat tctgtttgcc ggctatctgt ttaccggatt
    12961 ggggctgatt gcggtcggcg cgtcttattt caaacccgct ttcctcaatc tgggtgtgca
    13021 tctgatcggg gtcggcggta tcggcgtgct gactttgggc atgatggcgc gtaccgcgct
    13081 cggtcatacg ggcaatccga tttatccgcc gcccaaatcc gttccgtttg cgttttggct
    13141 gatgatggcg gcaaccgccg tccgtatggt tgccgtattt tcttccggca ctgcctacac
    13201 gcacagcata cgcacctctt cggttttgtt tgcactcgcg cttttggtgt atgcgtggaa
    13261 gtatattcct tggctgattc gtccgcgttc ggacggcagg cccggttgag acaaaccgcc
    13321 gcagatttcg ggtctgggcg gtttgctttt cagacggcag ggcggtcagt tgccgtccag
    13381 ccagcggtcg cgtgtggttt tggcttcttc aaaatagcgg tacagggctt cgcggtcgtc
    13441 ggcggtcagg atgtctgcca aaacgtccaa ctgtttgccc aagccttgaa ccagttgcag
    13501 caggctgtct ttgttggcaa tgcagatgtc cgcccacacg gcgggatgac cggaggcgat
    13561 acgggtgaag tcccgaaagc ccgtggcggc gaatttcaga tattcctgtc cgtcggggtg
    13621 gtcgagaatc tggtggacat aggcgaaggc ggtcaggtgg ggcatatggg agacggcagc
    13681 gaaaaccgcg tcgtggcgtt gcgcgtccat cgtataaatt tccgcaccga ccgcgtgcca
    13741 cagttcttct accaaggcaa tgccgtctga atgttcgccg ccgtgtggcg tgatgatgag
    13801 ttttctgtgg cggaacagcc cgaactgcgc ggcttgcgca ccgcttctgt ccgaaccggc
    13861 aatcgggtgg gcggcgatgc agcggtgcag gcggtcgggc agacagcggc ggaaggcttc
    13921 gatgaccgaa gatttggtgc tgccgacatc ggaaatccaa gtgtgttccg gcaaaacggg
    13981 gcgcagcgcg gtcaaaatgg cgggaaaggt ggcgacgggc gtggcaatca gtaccaagtc
    14041 cgcaccgccg atgctgtccg cgtcgatggc aacggacgca cggtcaatca cgccgcgttc
    14101 caatgcacgt tcgaggttgt cgcggtcggt gtcgataccg gtaacggtgc ggacgagtcc
    14161 ctgccttttg aggtcgagaa cgaacgaacc gccgatcagc cctacaccga tgagggcaat
    14221 atggttcaaa atgggcattt gtgtaaacgg ttttcgcaaa gtaccgtcat ggtagcctat
    14281 cggcggaata tgccgcaagg tcggcaggaa aaaggagaag aaatggacaa aatcagagtt
    14341 gccgccgtgc agatggtgtc gggcgtgtcg ccggaaacca acgtcgccgc catgaaacgc
    14401 ctggtcgcac gggcggcgga gcagggtgtg gattgggtgc tgctgcccga atattgggtg
    14461 ctgatgggcg caaacgatac cgacaaactc gcgcttgccg agcctttggg cggcggacgc
    14521 tttcagacgg cattgagcga aacggcgaaa gaatgcggcg tggtgctgtt cggcggaacc
    14581 gtgccgctgc aaagccccga ggcgggcaag gtcatgaata ctttattggt gtacgggcgc
    14641 gacggcaaac ggacggggct gtaccacaaa atgcacctct tcggcttttc cggtttgggc
    14701 gaacgctatg ccgaagccga taccatccgc gcgggcgggg atgtgccgca cttgtcggca
    14761 gaaggcgtgt cggtggcggc gggcatttgt tacgatgtcc gctttcccga atttttccgc
    14821 cgccagctgc cgtttgacgt attgatgctg cccgctgcgt ttacgcacac gacgggcaag
    14881 gcgcattggg agctgctgct gcgcgcgcgt gccgtcgaaa accaatgtta cgtcgtggcg
    14941 gcggcacagg gcggtttgca cgaaaacgga cggcgcacgt tcggacacag catgattgtc
    15001 gatccgtggg gcgacgtgtt ggacgtattg cccgaaggcg aaggcgttgt tacggcagac
    15061 atcgatgcca accgcctgaa cagcgtccgc aaccgcctgc ccgccttgaa ataccgggtt
    15121 ttggatgccg tctgaaggtt cagacggcat cggtgccggg gaatcagcgg gctgtaggat
    15181 gggcttcagc ctgccatttc catcaatccc acatttctac cgttttcatc gaatccatcg
    15241 aatccgcccc tttcgacgac ccagtcc
//
LOCUS       DAXIFD010000031        15224 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.031, whole genome shotgun sequence.
ACCESSION   DAXIFD010000031 DAXIFD010000000
VERSION     DAXIFD010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15224
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.031"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            380..1534
                     /gene="obgE"
                     /locus_tag="ACFOCN_000701"
     CDS             380..1534
                     /gene="obgE"
                     /locus_tag="ACFOCN_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HFC6969892.1"
                     /translation="MKFIDEAKIEVAAGKGGNGATSFRREKFVPRGGPDGGDGGKGGS
                     VWAEADENTNTLVEYRFVKRYQAKNGEKGHGSDRYGAGADDIVLKMPVGTLIRDLDTG
                     ENVADLTYHGQRVCLAKGGKGGLGNIHFKSSVNRAPKQSTPGEEGEARSLQLELKVLA
                     DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENHSFVMADIPGLI
                     EGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETVNPAEEALAIINELRKYDEELYG
                     KPRWLVLNKLDMLDEEEAQTRTAAFLEAVGWDSPKPDDRFQFDMETPRLFQISALTHQ
                     GTQELVHQINQYLTEKKRIEAEKAEAEQAAAKAEIAEQQPKTDTGVFKPE"
     gene            1617..2666
                     /locus_tag="ACFOCN_000702"
     CDS             1617..2666
                     /locus_tag="ACFOCN_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6969893.1"
                     /translation="MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLL
                     KILYSLLEVTSNTKNRLLKTELQKSFADKLLNVFRPDSLGRLSKRLQGRGRTEIVLKL
                     QNGTTHSSLNFSSNSSSQVNVQSIGLKENEYTPTPIFLPSRELITLCPWFTSLYQNQS
                     IPFEETWFDACMQLNHPLAKGPRETKIRELLEPIENAMGGKVSEEQGRFYLSLTNTGG
                     KIEAPLVAEGLRKFVMIARLIATGALLDKGYLFWDEPEANLNPKLIKVAARIIWSLSQ
                     QGIQVFIATHSLFLLRELELLKLENNTDLPVRFFSLIASDDGTKVEQGNSINDLNTLI
                     LLDENIMQADRYLNI"
     gene            3354..4775
                     /gene="cysS"
                     /locus_tag="ACFOCN_000703"
     CDS             3354..4775
                     /gene="cysS"
                     /locus_tag="ACFOCN_000703"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HFC6969894.1"
                     /translation="MTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVM
                     VVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADA
                     LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSL
                     DDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGRGRPGWHIECSAMSENLFG
                     NTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFI
                     RVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTR
                     LYTTLKNTPPADPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNNAQL
                     AGCLKALGGIIGLLQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARSDKNWAESDRI
                     RDLLNEHKIILEDNAGGTTWRRG"
     gene            4858..5637
                     /locus_tag="ACFOCN_000704"
     CDS             4858..5637
                     /locus_tag="ACFOCN_000704"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6969895.1"
                     /translation="MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADL
                     SADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFDR
                     LSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK
                     NWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGW
                     RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVMEYDYAAE"
     gene            5624..5968
                     /locus_tag="ACFOCN_000705"
     CDS             5624..5968
                     /locus_tag="ACFOCN_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969896.1"
                     /translation="MLPNKVLGKYDWNVDGKTGIGAAWVVAAFILPILVWAIFMLSRM
                     QGWLAPTKANPTWALVWLLICMPCLLIASKCLGWKGWRRVVNIFACLTVCAILSVPAS
                     LLIAFTLRDLLK"
     gene            5979..6509
                     /locus_tag="ACFOCN_000706"
     CDS             5979..6509
                     /locus_tag="ACFOCN_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6969897.1"
                     /translation="MQGFELEDLTLWLIRDAGEDQMWIDRWAISYPVVQMSEASAGQS
                     IGEWQAGLRTAFERIRGKYVAVVAHGAGAAAFLAWLYQADILTRKKIANIILVPQRPD
                     IFPDDAEHTFQRVRCPCRAALVVPEHGGVPHGWAQKQADLWNARLLVSPHSGSLNGML
                     GGWQWGMKLMQEMLLA"
     gene            complement(6602..7717)
                     /gene="asd"
                     /locus_tag="ACFOCN_000707"
     CDS             complement(6602..7717)
                     /gene="asd"
                     /locus_tag="ACFOCN_000707"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HFC6969898.1"
                     /translation="MKVGFVGWRGMVGSVLMQRMKEENDFAHIPEAFFFTTSNVGGAA
                     PDFGQAAKTLLDANNVAELAKMDIIVTCQGGDYTKSVFQALRDSGWNGYWIDAASSLR
                     MKDDAIIVLDPVNRNVIDNGLKNGVKNYIGGNCTVSLMLMALGGLFQNDLVEWATSMT
                     YQAASGAGAKNMRELISGMGAVHAQVADELADPAGSILDIDRKVSDFLRSEDYPKANF
                     GVPLAGSLIPWIDVDLGNGQSKEEWKGGAETNKILGRSDNPTVIDGLCVRIGSMRCHS
                     QALTLKLKKDLPISEIEAILAGANDWVKVIPNEKEASIRELTPAKVTGTLSVPVGRIR
                     KLGMGGEYISAFTVGDQLLWGAAEPLRRVLRIVLGSL"
     gene            7893..8474
                     /locus_tag="ACFOCN_000708"
     CDS             7893..8474
                     /locus_tag="ACFOCN_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6969899.1"
                     /translation="MEEKNDYTDAASDNRNGQEIEVGIAGAGDRILAALLNQLFTFLV
                     LLVPFAGLIAFAIKNEGRIGGSEEIFGLLLGMTSFWVGLAGILVYTVVQIYYMSRDGQ
                     SLGKKIMRIRVLKTDGRNPGFVGTVLVREIAWSVLVAIIAAVIGLAVGDNGENAINLL
                     AFLANFVLLFMVKRDRRTLYDILADTVVVKLPK"
     gene            complement(8536..9390)
                     /gene="folD"
                     /locus_tag="ACFOCN_000709"
     CDS             complement(8536..9390)
                     /gene="folD"
                     /locus_tag="ACFOCN_000709"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HFC6969900.1"
                     /translation="MSAQLINGKEVSQKRLQAVAEAVAQRQQNNLHTPCLAVVLVGGD
                     PASAVYVRNKKTSCQKCGIKSLSYELPESTSQEELLALVDRLNVDSEVDGILVQLPLP
                     KHLDSQAVLERISPDKDVDGFHPYNVGRLAVKMPLMRPCTPKGVMTLLEAYGIDPKGK
                     KAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAGADILVVGVGIPNFVKG
                     EWIKPGAVVIDVGINRLDDGSLCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTL
                     HAASLHDA"
     gene            9613..9690
                     /locus_tag="ACFOCN_000710"
     tRNA            9613..9690
                     /locus_tag="ACFOCN_000710"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9648..9650,aa:Pro,seq:tgg)
     gene            9715..9791
                     /locus_tag="ACFOCN_000711"
     tRNA            9715..9791
                     /locus_tag="ACFOCN_000711"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9749..9751,aa:Arg,seq:tct)
     gene            9819..9894
                     /locus_tag="ACFOCN_000712"
     tRNA            9819..9894
                     /locus_tag="ACFOCN_000712"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9852..9854,aa:His,seq:gtg)
     gene            10030..10536
                     /locus_tag="ACFOCN_000713"
     CDS             10030..10536
                     /locus_tag="ACFOCN_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HFC6969901.1"
                     /translation="MVDAWSVPDFESKICPPEALSERLARLPRPLVFTNGCFDILHRG
                     HVTYLAQARSAGAALVLALNTDASVRRLGKDGDRPINPLENRAAVAAALESVDLVTWF
                     DGDTPAALIEAVKPEILVKGGDWAADKIVGAAETLARGGQVFSIPFLHQTSTTKTLAK
                     IRAAEGGK"
     gene            10533..12311
                     /locus_tag="ACFOCN_000714"
     CDS             10533..12311
                     /locus_tag="ACFOCN_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/type III pantothenate kinase"
                     /protein_id="HFC6969902.1"
                     /translation="MTVLKLSHWRVLAELADGLPQHVSQLARMADMKPQQLNGFWQQM
                     PAHIRGLLRQHDGYWRLVRPLAVFDAEGLRELGERSGFQTALKHECASSNDEILELAR
                     IAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAA
                     VACRRALSRLGLDVQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVLPKE
                     VENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARDGFAPFVAEYQAANRD
                     HGKAVLLLRDGETVFEGTVKGVDGQGVLHLETAEGKQTVVSGEISLRSDDRPVSVPKR
                     RDSERFLLLDGGNSRLKWAWVENGTFATVGSAPYRDLSPLGAEWAEKVDGNVRIVGCA
                     VCGEFKKAQVQEQLARKIEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRRFSRNA
                     CVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYPFPTTT
                     GNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLAENT
                     VRVADNLVIHGLLNLIAAEGGESEHT"
     gene            12424..13248
                     /locus_tag="ACFOCN_000715"
     CDS             12424..13248
                     /locus_tag="ACFOCN_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HFC6969903.1"
                     /translation="MKWLFTLLAVLNIAVFGGTVGYKLAVKATGGVPENRAVENTPPA
                     TPAADNAAASVEDTAALLKPGDILTEEQAEQLRLKKEAEQKKLREKKQREEKARREKL
                     AAEKAQAERENGAADALCAAQASLTMDEDDYHRIKGLLGKWSHVASRSVEKRTAKAKP
                     ADKTYRVVLPVSADAENQAAELSAKGFNPIPFDGALSLGVGNSRENAQALQNRLAGAG
                     FGGAHIVEHFAEADRQDDSLSVSRMTVLFTGVNAADADEIRKITSLYGKLNLKSCK"
     gene            complement(14011..14799)
                     /locus_tag="ACFOCN_000716"
     CDS             complement(14011..14799)
                     /locus_tag="ACFOCN_000716"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HFC6969904.1"
                     /translation="MLTLYGETFPSRLLLGTAAYPTPEILKQSIQTAQPAMITVSLRR
                     AGSGGEAHGQGFWSLLQETGVPVLPNTAGCQSVQEAVTTAQMAREVFETDWIKLELIG
                     DDDTLQPDVFQLVEAAEILIKDGFKVLPYCTEDLIACRRLLDAGCQALMPWAAPIGTG
                     LGAVHAYALNVLRERLPDTPLIIDAGLGLPSQAAQVMEWGFDGVLLNTAVSRSGDPVN
                     MARAFALAVESGRLAFEAGPVEARDKAQASTPTVGQPFWHSAEY"
     gene            complement(15013..15207)
                     /gene="thiS"
                     /locus_tag="ACFOCN_000717"
     CDS             complement(15013..15207)
                     /gene="thiS"
                     /locus_tag="ACFOCN_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HFC6969905.1"
                     /translation="MNIILNGGPAELHGTSVADLIAQTAPQQPFAVAVNTVFIPKGAY
                     AETVLNENDKIDIVRPVVGG"
BASE COUNT         3626 a         3850 c         4245 g         3503 t
ORIGIN      
        1 gtccacagga caatggtggt cagaatgccg atgaaaccgg caacggtcag ccagtgcagc
       61 gcgcgtgtca acgggtcgta aacggcaggt tggtttgtgt tcataaaaaa cttatatatg
      121 taacggtttg aacggacatt ccgtcgggtc ggaatgtcaa aaaggcgcga ttgtaccaaa
      181 gaagttggac ataattttgt ttgcaggctg aagatttgct taaaaattca ttaagatggg
      241 cggaacaaat agtttgggta cggcgtgttg aaataccgct tatcccttat aatagcgtcc
      301 gaaattctgt tcagacggca tcaaaacaca cggtaatccg tctgaacccc catttgaaac
      361 caacaaacaa gagcattgaa tgaaattcat cgacgaagca aaaatcgaag tcgccgcagg
      421 caaaggcggt aatggcgcaa ccagtttccg ccgcgaaaaa ttcgtaccgc gcggcggtcc
      481 ggacggcggc gacggcggca aaggcggcag cgtttgggca gaagccgacg aaaacaccaa
      541 caccctcgtc gaataccgct tcgttaaacg ctaccaagcc aaaaacggcg aaaaaggcca
      601 cggttccgac cgttacggcg caggtgcgga cgacatcgtc ctcaaaatgc ccgtcggcac
      661 ccttatccgc gacctcgaca ccggcgaaaa cgttgccgac ctcacttatc acggacagcg
      721 cgtctgcctt gccaaaggcg gcaaaggcgg cttgggcaac atccacttca aatcctccgt
      781 caaccgcgcc ccaaaacaat ccacgcccgg cgaagaaggc gaagcccgtt ccctgcaact
      841 cgaactcaaa gtcctcgccg atgtcggctt attgggtatg cccaacgccg gcaaatccac
      901 cctgattacc gccgtatccg ccgcacgccc caaaatcgcc aactacccct tcaccaccct
      961 gcatccaaac ttaggcgtgg tacgcatcga cgaaaaccac agcttcgtga tggccgacat
     1021 ccccggcctg attgaaggcg cggcagaagg cgcgggtttg gggcatcgtt tcctcaaaca
     1081 cttatcgcgc accggattat tgctgcacgt cgtcgatttg gcgcccttcg acgaaaccgt
     1141 caacccggcc gaagaagcac ttgccatcat caacgaattg cgcaaatacg atgaagaact
     1201 ttacggcaaa ccgcgctggc tggtgctgaa taaactcgac atgcttgacg aagaagaagc
     1261 ccaaacgcgc actgccgcct tcctcgaagc cgtcggctgg gactccccca aacccgacga
     1321 ccgtttccaa tttgacatgg aaaccccgcg cctcttccaa atcagcgcgc tgacccacca
     1381 aggcacgcag gaattggtac accaaatcaa ccaatacctg accgagaaaa aacgtatcga
     1441 agccgaaaaa gcagaagcgg aacaggcagc ggcaaaagcc gaaattgccg agcagcagcc
     1501 gaaaacggat acgggcgtgt ttaagccgga gtgaaaaaag aaagggtttc agacgatatt
     1561 tgttctacaa aaggttgttt gaaacaattt taaagcaaga ttgaaatgga ttaaaaatgt
     1621 catctaacca atatatccag tcgcttgagt tgacaaactt taccgttctt ccaaacgata
     1681 cttttgaatt ttctgaaaat ctcaatgtta ttgttgccga aaacggttgt ggcaaaacac
     1741 atttgttaaa aattttatac agcctgctag aagtaacatc taacaccaaa aacagattac
     1801 tgaaaacaga attgcaaaaa agttttgccg ataaattact gaatgttttc cgtcccgatt
     1861 ccttgggcag gttgagcaaa cgtttgcagg ggcgcgggcg tacggaaatc gttttaaaac
     1921 tgcaaaacgg cactacgcat agtagtctga atttttccag taactcatca tcgcaagtca
     1981 atgttcaaag catcggattg aaagaaaatg aatatactcc gacacctatc ttcttaccca
     2041 gccgcgaatt aattacactt tgcccttggt tcacttcttt gtatcaaaac caaagcatcc
     2101 ctttcgaaga aacttggttt gatgcctgta tgcaattaaa tcacccgctt gccaaaggcc
     2161 ccagagaaac aaaaattcga gaattgctcg aacctattga gaacgcgatg ggcggaaaag
     2221 tatctgaaga acaaggaagg ttttatctat cgctgacaaa tacgggcggt aagattgaag
     2281 cacctttggt agcagagggt ttgcggaaat ttgtcatgat tgcccggtta atcgcaacag
     2341 gggcattgct ggataaaggc tatctatttt gggatgaacc ggaagctaat ctgaatccta
     2401 aattgatcaa agtggctgcc cgtattattt ggtctttatc tcaacagggt attcaggttt
     2461 ttattgcaac acactcttta ttcttattga gagaattgga acttttgaag cttgaaaata
     2521 acacggattt acctgtacgt tttttctcgt tgattgcttc cgatgatgga acaaaagtgg
     2581 agcaagggaa cagtattaat gatttgaaca cattgatatt gttagatgaa aacattatgc
     2641 aggcagacag gtatctgaat atttgaggtt aagctatgac tacaatcaca gaaaagagat
     2701 taacctttgc ttttcctgaa gattattacg ttaccaagta tgacgaatgg gaacattata
     2761 aaatttttca gaacagttgt aatttacgta ataaaattga tacaaatgaa aagggaaaga
     2821 acgggataaa tcaaagtgta gatgacgata atggcagctc aggtgtagat ataatagccc
     2881 ttcatgaatc gacactttgg ctaatcgaaa ttaaagatta ttaccgactt gggcttgagc
     2941 caaatgccca atcaatagat gaaaaacttt ctgacctacc atatttaatc gcaagaaaaa
     3001 ttcgagattc attggcagga ttggtttctg ctaaatttaa agcagaaaaa caggaagaaa
     3061 aagatttttc tcgcttggct ttagattgta acgaaataaa aatagtcctt catattgaaa
     3121 tgcctagtat aagaagtaaa ctttatccct cgtcatcaga tttagcaaac ttattaaaag
     3181 ataagtttaa attatcagaa tttacaaaaa attttgcaaa ctgttatgca gaaccaattt
     3241 tcacaaatat cagccatatt aataatccgc aactacgtaa tgttccttgg tccgtatcta
     3301 caggaacaga acagaaatta tcatccgagc aacaaagatt aatccatagt cccatgacca
     3361 ccatctacaa cacccttacc cgccaaaaag aaccctttgc ccccatcgac cctgaaaacg
     3421 tgcgtatgta cgtttgcggc atgactgttt acgactattg ccacttaggc catgcccgtg
     3481 tgatggtggt gtttgacatg attgcccgtt ggttgcgcga gtgcggctat ccgctcactt
     3541 atgtacgcaa catcaccgac atcgacgaca aaatcattgc ccgtgcggct gaaaacggcg
     3601 agaccatcgg cgagctgact gcgcgtttca ttcaggctat gcacgaagat gccgatgctt
     3661 tgggcgtgtt gcgtcccgat atcgagccga aggcgacgga aaacattccg caaatgattg
     3721 cgatgattga aaccctgatt caaaacggca aggcttatcc tgccgccaac ggcgacgttt
     3781 actacgccgt gcgcgagttt gccgcttacg gccaattatc gggcaaatcg ttagacgacc
     3841 tgcgtgcagg tgagcgtgtg gaagtggacg gtttcaaacg cgatccgctt gattttgtgt
     3901 tgtggaaagc ggcgaaagca ggcgaaccgg cgtgggaaag cccttggggc aggggacggc
     3961 cgggctggca cattgaatgc tccgccatga gtgaaaacct gttcggcaat accttcgaca
     4021 tccacggcgg cggcgcggat ttgcagtttc cgcaccacga aaacgaaatt gcccaaagcg
     4081 tcggcgcgac ggggcatacc tgcggtcatc atcacgcgca aacccaccac gggcaaagca
     4141 tcgccagcca cgtcaaatat tggctgcaca acggctttat ccgcgtggac ggcgaaaaaa
     4201 tgtccaaatc actgggcaac ttcttcacca tccgcgaagt gttgaaacaa tacgaccccg
     4261 aagtcgtgcg cttcttcatc ctgcgcgccc actaccgcag cccgttgaac tattccgacg
     4321 cgcatttgga cgacgcaaaa ggcgcgttga cgcgtttgta tacgactttg aaaaatacgc
     4381 cgcccgccga tccgatgccg tctgaagccg gcgatgacta cacgcgccgc ttttatgttg
     4441 cgatgaatga tgattttgat acggtgaaag cggtggcggt gttgttcgaa cttgccggcg
     4501 aagtgaacaa aaccaataac gcgcaactgg caggctgcct gaaagccttg ggcggcatca
     4561 tcggactgct gcaacgcgac ccgaccgagt tcctgcaagg cggcgcggct tcagacggcc
     4621 tctccaacga agaaatcgaa gacttgattg cccggcggaa acaggcgcgc tccgataaaa
     4681 actgggcgga atccgaccgc attcgcgacc ttctgaacga acacaaaatc attttggaag
     4741 acaacgccgg cggcacgact tggcggcgcg gttgaaatcc atcgaaaagg gtaaatgtgc
     4801 cgcattttgc ccttttttgt tcagacggca tttttattgt gagaacttat ttttattatg
     4861 cttaaaatca tttccgccaa cgtcaacggc atccgctccg cctacaaaaa aggtttttac
     4921 gaatatatcg ccgcatcggg cgcggacatt gtctgcgtgc aggaactcaa agcgcaggag
     4981 gctgatttgt ctgccgatat gaaaaatccg cacgggatgc acggccattg gcattgcgcc
     5041 gagaagcgcg gttacagcgg cgtggcggtg tacagcaaac gcaaacccga caatgtgcaa
     5101 atcggtatgg gcattgaaga attcgacagg gaagggcggt ttgtgcgttg cgatttcgac
     5161 aggttgagcg ttatttcgct ttacttgccc agcggcagca gcgcggaaga acgccagcag
     5221 gtgaaatacc gtttccttga tgcgttttac cctatgctcg aagcgatgaa aaacgaagga
     5281 cgcgacattg tcgtttgcgg cgactggaac atcgcccacc aaaacatcga cctgaaaaac
     5341 tggaaaggca atcagaaaaa ttcgggcttc ctaccggaag aacgcgagtg gataggcaag
     5401 gttatccaca agctcggttg gacggatatg tggcgcacgc tttatcccga tgtgccgggc
     5461 tacacgtggt ggagcaaccg cgggcaggcg tatgcgaaag atgtcgggtg gcgcatcgat
     5521 tatcagatgg ttacgcccga acttgccgcc aaagccgtgt ccgcacacgt ttataaagat
     5581 gaaaaatttt ccgaccatgc gccgctggtc atggagtatg actatgctgc cgaataaagt
     5641 tttgggtaaa tatgattgga atgtggacgg aaaaacagga ataggcgcag catgggttgt
     5701 cgctgcgttt atcctgccca tattggtgtg ggcgatattt atgttgtcgc ggatgcaagg
     5761 ctggcttgcg ccgaccaagg caaacccgac atgggcgttg gtgtggctgc tgatctgcat
     5821 gccctgcctg ctgattgcgt ccaaatgttt gggttggaaa ggctggcggc gggtggtgaa
     5881 tatttttgcc tgcctgaccg tctgcgccat attgagcgta cccgcttcgc tgctcatcgc
     5941 ctttaccctc cgggacctgc tgaaataggc ggggcggtat gcagggtttt gaactcgaag
     6001 atttgacgct ttggctgata cgcgatgccg gagaggatca gatgtggata gaccgttggg
     6061 cgatcagtta tcccgtcgtg cagatgtccg aagcgtcggc cggtcaaagc ataggggaat
     6121 ggcaggcagg gcttcggacg gcatttgaac gcatacgtgg caaatacgtc gccgttgtcg
     6181 cacacggtgc gggcgcggcc gcatttttgg cgtggctgta tcaggcagac atcctgacac
     6241 ggaagaaaat tgccaacatc atccttgtac cgcagcgtcc cgatattttt cccgacgatg
     6301 cggaacacac tttccaacgc gtccgctgtc cctgccgtgc cgcattggtt gtacccgaac
     6361 acggcggcgt gccgcacggt tgggcgcaaa aacaggcgga tttgtggaac gcccgcctgt
     6421 tggtttcccc gcattcgggc agtttgaacg gcatgctcgg cggctggcag tggggtatga
     6481 agctgatgca ggaaatgttg ctggcgtgaa cgcttgcctt atcggaattt cggttaactg
     6541 gggttgcaag gaaaatgccg tctgaaacag gcttcagacg gcatttccat tcaaacaggg
     6601 cttacaggct gcccaacacg atacgcaata cgcggcgcag cggctcggcc gcgccccaca
     6661 agagctggtc gccgacggtg aacgcgctga tgtattcgcc gcccataccc agtttgcgga
     6721 tgcgtccgac ggggacggac agcgtgccgg taactttggc gggggtcagc tcgcggatgc
     6781 tggcttcttt ttcgttgggg atgactttca cccagtcgtt cgcgcctgcc aaaatcgctt
     6841 cgatttcgga aatgggcagg tcttttttca acttcagggt aagggcttgg ctgtggcagc
     6901 gcatagagcc gatgcggacg cacaggccgt caatcacggt tggattgtcg ctgcggccga
     6961 ggattttgtt ggtttccgcg ccgcctttcc attcttcttt ggactggccg ttgcccaaat
     7021 ccacgtcaat ccacggaatc aggctgccgg cgagcggtac gccgaagttg gctttcggat
     7081 agtcttcgct gcgcaggaaa tcagatactt tgcggtcgat gtcgagaatc gagccggcag
     7141 gatcggcaag ttcgtccgcc acttgggcgt gaaccgcgcc cataccgctg atgagttcgc
     7201 gcatgttttt cgcgcctgcg ccggaagcgg cttggtaggt catgctggtt gcccattcga
     7261 ccaaatcgtt ttggaacagg ccgcccaaag ccatcagcat cagggaaacg gtacagttgc
     7321 cgccgatgta gtttttcacg ccgtttttga ggccgttgtc gatgacgttg cggttgacgg
     7381 ggtcgaggac gataatcgcg tcgtctttca tacgcagcga ggatgccgcg tcaatccagt
     7441 agccgttcca gccgctgtcg cgcagggctt ggaagacgga tttggtgtag tcgccgcctt
     7501 ggcaggtaac gatgatgtcc atttttgcca gctcggcaac gttgttcgcg tccaataatg
     7561 ttttagccgc ctgaccgaaa tcaggggctg cgccgccgac gttggaagtg gtaaagaaaa
     7621 acgcttcggg aatgtgggcg aagtcgtttt cttctttcat acgctgcatc aaaaccgaac
     7681 cgaccatacc gcgccagccg acgaaaccta ctttcattgt gttgctcctt gaggaaaaat
     7741 cgttaataaa attatgtatg gcgtaaagga agcgttttaa cgccgtattg ggaaaatgta
     7801 aagttcttta tcgggatttc tttaagtatt ggcgttttcg gtgtcgtggc ggtagaatcg
     7861 gggtcagtta agaacaatta tcaggaacgg atatggaaga aaaaaacgac tacaccgacg
     7921 cggcatccga caaccgcaac gggcaggaaa ttgaagtcgg aattgccggc gcaggcgacc
     7981 ggatacttgc cgcgctgctg aaccaattgt ttaccttttt ggttttgttg gtgccgtttg
     8041 ccggactgat tgctttcgcc atcaagaatg aaggcaggat tggcggcagt gaggaaatat
     8101 tcgggctgct tttgggcatg acttcctttt gggtaggact ggcgggcatt ttggtttata
     8161 ccgtcgttca aatctactat atgagtcggg acgggcagtc attgggtaag aaaatcatga
     8221 gaatcagggt gttgaaaacc gacggccgca atcccggttt tgtcggcacg gttttggtac
     8281 gcgaaatcgc atggtcggtt ttggttgcca ttattgccgc cgttatcggt cttgcagtag
     8341 gtgacaacgg agaaaacgcc atcaacctgc tggcattcct tgccaacttt gtcctgctct
     8401 ttatggtcaa acgcgatcgc cgcacgcttt acgacatact ggcggatacg gttgtcgtca
     8461 agctgcccaa ataaacggac acggcaaaat gccgtctgaa agcctttcag acggcatttt
     8521 tatcttcaga accgctcaag catcgtgcag tgaagccgcg tgcagggtgt tttccatcaa
     8581 tgtggcaatc gtcatcggac ccacgccgcc gggaacgggc gtaatcatcg ccgcccgttc
     8641 ttttgccgtt tcaaattcca cgtcgccgca caggctgccg tcgtccagac ggttgatgcc
     8701 cacatcaata acgaccgcgc cgggtttgat ccattcgcct ttgacaaagt tcggaatgcc
     8761 tacgccgacc accaaaatat cggccccggc aacctcgtct gccagatttt cggtcgcact
     8821 gtggcagacc gttaccgttg cgcgcgccag cagcaattcc aaagcctgcg ggcggccgac
     8881 aatattcgac gcgccgacca cgaccgcttt tttccccttc ggatcgatgc cgtaagcctc
     8941 caaaagcgtc atcacgccct tgggcgtaca cgggcgcatt agcggcattt tgactgcaag
     9001 cctgcccaca ttgtaaggat ggaagccgtc cacgtcctta tccggcgaaa tacgttccaa
     9061 aaccgcctgg ctgtcgaggt gcttcggcag tggcagctga accagaatac cgtccacttc
     9121 ggaatcgaca ttcaggcggt cgaccagtgc cagcagttct tcctgcgatg ttgattcggg
     9181 cagctcgtaa gacagtgatt tgatgccgca tttttggcag gaggttttct tgttgcggac
     9241 ataaaccgcg ctggcagggt cgcctccgac caaaaccacg gccaggcaag gcgtgtgcag
     9301 attgttctgt tggcgttgcg ccaccgcttc ggcaaccgcc tgcaggcgtt tttgcgaaac
     9361 ttctttacca ttgatcagtt gtgccgacat atccgtcctt ttgttaaaca ggtagaaaat
     9421 gctgaaaatt atcgcatttt ccgtttgttt ttacagcagg atgccgaaaa taaatttgcc
     9481 ctgaaataaa atacggctgt ttggacggat taaatatttt ttcaaatcaa aaaactatat
     9541 ttttcatctt ggtgtcttga aaataaatgt tgacgcatct ttccctgagt tgtatagttc
     9601 gcttcttcaa gtcggggcgt agcgcagccc ggttagcgca tctgctttgg gagcagaggg
     9661 tcgtgagttc gaatcccacc gccccgacca atcaatcagc acgaatcggc atgagcgccc
     9721 gtagctcaac cggatagagc accgaccttc taagtcgggg gttacaggtt cgattcctgt
     9781 cgggcgtgcc aagaatttga ttgaaaaccg tttttatggt ggctgtagct cagttggtag
     9841 agccccggat tgtgattccg gttgtcgtgg gttcgagccc catcagccac cccagataaa
     9901 ggcccgtact tttcggtacg ggtcttttcc cgtttgcgcg tactgtccgc gccgccggct
     9961 ttgcctttcg catatgcttc tgtatcatgt gggtttttct gtcttttatg gtttttgtcg
    10021 gaggctttga tggttgacgc ttggtctgtc cctgattttg aatcgaaaat ctgtccgccc
    10081 gaggcattgt ccgaacggtt ggctcggttg ccgcgcccgc tggtgtttac caacggctgt
    10141 ttcgacatcc tccacagggg gcacgttact tatctggcgc aggcgcgttc ggcaggggcg
    10201 gcgttggtgc tggcgttgaa taccgatgct tcggtgcggc gtttgggcaa ggacggcgac
    10261 cgcccgatta atcctttgga gaaccgtgcc gccgttgccg ccgctttgga aagtgtggat
    10321 ttggtaacgt ggtttgacgg ggatacgccg gcggcgttga ttgaggcggt caaacctgag
    10381 attttggtca agggcggcga ttgggctgcg gataagattg tcggtgcggc agaaacgttg
    10441 gcgcgcggcg gtcaggtgtt ttcaattccg tttctgcacc agacttcgac aacgaagact
    10501 ttggcaaaaa tccgtgcggc agagggcgga aaatgacggt tttgaagctt tcgcactggc
    10561 gggtgttggc ggagcttgcc gacggtttgc cgcaacacgt ctcgcaactg gcgcgtatgg
    10621 cggatatgaa gccgcagcag ctcaacggtt tttggcagca gatgccggcg cacatacgcg
    10681 ggctgttgcg ccaacacgac ggctattggc ggctggtgcg cccattggcg gttttcgatg
    10741 ccgaaggttt gcgcgagctg ggggaaaggt cgggttttca gacggcattg aagcacgagt
    10801 gcgcgtccag caacgacgag atactggaat tggcgcggat tgcgccggac aaggcgcaca
    10861 aaaccatatg tgtgacccac ctgcaaagta agggcagggg gcggcagggg cggaagtggt
    10921 cgcaccgttt gggcgagtgt ctgatgttca gttttggctg ggtgtttgac cggccgcagt
    10981 atgagttggg ttcgctgtcg cctgttgcgg cagtggcgtg tcggcgcgcc ttgtcgcgtt
    11041 taggtttgga tgtgcagatt aagtggccca atgatttggt tgtcggacgc gacaaattgg
    11101 gcggcattct gattgaaacg gtcaggacgg gcggcaaaac ggttgccgtg gtcggtatcg
    11161 gcatcaattt tgtcctgccc aaggaagtag aaaatgccgc ttccgtgcaa tcgctgtttc
    11221 agacggcatc gcggcggggc aatgccgatg ccgccgtgtt gctggaaacg ctgttggcgg
    11281 aacttgatgc ggtgttgttg caatatgcgc gggacggatt tgcgcctttt gtggcggaat
    11341 atcaggctgc caaccgcgac cacggcaagg cggtattgct gttgcgcgac ggcgaaaccg
    11401 tgttcgaagg cacggttaaa ggcgtggacg gacaaggcgt tctgcacttg gaaacggcag
    11461 agggcaaaca gacggtcgtc agcggcgaaa tcagcctgcg gtccgacgac aggccggttt
    11521 ccgtgccgaa gcggcgggat tcggaacgtt ttctgctgtt ggacggcggc aacagccggc
    11581 tcaagtgggc gtgggtggaa aacggcacgt tcgcaaccgt cggtagcgcg ccgtaccgcg
    11641 atttgtcgcc tttgggcgcg gagtgggcgg aaaaggtgga tggaaatgtc cgcatcgtcg
    11701 gttgcgccgt gtgcggagaa ttcaaaaagg cacaagtgca ggaacagctc gcccgaaaaa
    11761 tcgagtggct gccgtcttcc gcacaggctt tgggcatacg caaccactac cgccaccccg
    11821 aagaacacgg ttccgaccgc tggttcaacg ccttgggcag ccgccgcttc agccgcaacg
    11881 cctgcgtcgt cgtcagttgc ggcacggcgg taacggttga cgcgctcacc gatgacggac
    11941 attatctcgg gggaaccatc atgcccggtt tccacctgat gaaagaatcg ctcgccgtcc
    12001 gaaccgccaa cctcaaccgg cacgccggta agcgttatcc tttcccgacc acaacgggca
    12061 atgccgtcgc cagcggcatg atggatgcgg tttgcggctc ggttatgatg atgcacgggc
    12121 gtttgaaaga aaaaaccggg gcgggcaagc ctgtcgatgt catcattacc ggcggcggcg
    12181 cggcaaaagt tgccgaagcc ctgccgcctg catttttggc ggaaaatacc gtgcgcgtgg
    12241 cggacaacct cgtcattcac gggctgctga acctgattgc cgccgaaggc ggggaatcgg
    12301 aacatactta aaaaatacac cctttttcaa cacggggcgg tatccgtccg aatccgtccg
    12361 gattctgccg cccgacagac tgccgcccag gcgggcgggg tttcaaacat tgaggaaatt
    12421 ctaatgaaat ggctcttcac ccttttggcg gtactcaata ttgccgtatt cggcggcacg
    12481 gtgggctata aattggccgt taaagcgacg ggcggcgtgc cggaaaaccg ggccgtcgaa
    12541 aacacgcccc ccgcaacgcc cgccgccgac aatgcggcgg catccgtgga ggatacggcg
    12601 gcactgctca aaccgggcga catcctgacc gaagagcagg ccgagcagtt gcgcttgaaa
    12661 aaggaagcgg aacagaaaaa actgagggag aaaaaacagc gcgaggaaaa agcccgccgc
    12721 gaaaaactcg ccgccgaaaa ggcgcaggcg gaacgcgaaa acggcgcggc ggatgcctta
    12781 tgcgccgcgc aggcaagcct cacgatggac gaagacgact accaccgcat caaagggctt
    12841 ttgggcaaat ggtcgcacgt tgccagcagg agcgtcgaaa aacgcaccgc caaagccaaa
    12901 cctgccgaca aaacctaccg cgtcgtcctg cccgtttccg ccgatgccga aaatcaggcg
    12961 gcggagctgt ctgccaaagg tttcaacccc ataccgtttg acggcgcatt gagtttgggt
    13021 gtcggcaaca gccgggaaaa cgcccaagcc ctgcaaaacc ggcttgccgg cgccggattc
    13081 ggcggggcgc atattgtcga acactttgcc gaagccgaca ggcaggacga ttctttgagc
    13141 gtgtcgcgta tgacggtttt gtttaccggc gtgaatgccg ccgatgcgga cgaaattcgt
    13201 aaaatcacgt ccctatacgg caaactgaac ctcaagtctt gcaaataggc gcgaaagccg
    13261 gacgataaac gccaaaccca ccgcgaaggt gggtttggcg tttcggtttt gagtatctga
    13321 tatataaaaa gggaatgtat gtctcgtata tgccgactcc aagtgtgaaa gtgaattgtg
    13381 agggaataca gtgtttaatg gttcggaatg gacgacttcc gagtggtttt gattatacgc
    13441 taataataat aattatcaat aaaaatttaa aaataaatgc ggattttttg taatacgatg
    13501 aaaaataaac aaattaacct gtccgccgat gtttgtgatt cgggtcggca aactttcatt
    13561 gtgtcggaca aatcggggtc ggcagtcata gctgagggct tcgtgcctga cggaaataag
    13621 cctgccgtgt ttgaacatcc gtccgatttg gcgcggacag ggttgtcatt cgggggtgtt
    13681 tgagcgtgga ttcggggatg caaaagcggt aaaaccgttg cggatgaagg cttacggacg
    13741 gctttaggta tttttaagtg tattcaaaca acaacaaaac gcttcttcta ttgccgtatt
    13801 tagggcttgc gcggcagcct gcacaccgtg gaggccgagt gtttcgttgg ttgcggcatc
    13861 gggacgggcg gcaaggtttt ccggccggtt tttccatttt ttccgacaga gccgtgatgc
    13921 ttgggaatgg cggtttgccc gtttcagacc gccgccgttt tgggctgcga tgccgtctga
    13981 accgttcaga cggcattttt gccgcctttt tcaatattcc gccgaatgcc aaaacggttg
    14041 tccgactgtc ggcgtgctgg cttgcgcttt gtcgcgtgct tcgaccggtc cggcttcaaa
    14101 tgccagccgt ccggattcga cggcgagtgc gaaggcgcgt gccatattga ccggatcgcc
    14161 gctgcgggaa acggcagtat tcaaaagcac gccgtcaaag ccccattcca tcacttgtgc
    14221 cgcctgtgag ggcaaaccca agcccgcgtc gataatcagc ggcgtgtcgg gcaggcgttc
    14281 gcgcaggacg ttcaacgcgt aggcgtgaac cgcgcccaaa cccgtgccga tcggggccgc
    14341 ccacggcatc aacgcctgac agcccgcgtc gagcaggcgg cggcaggcaa tcaggtcttc
    14401 ggtgcaataa ggcagcactt tgaagccgtc tttaatcagg atttccgccg cttcgacaag
    14461 ctggaacaca tccggctgca aggtgtcgtc atctccgatg agttccaatt ttatccaatc
    14521 ggtttcaaac acttcgcgcg ccatttgcgc cgtcgttacc gcttcctgca cgctttggca
    14581 gcctgccgtg ttcggcagga cgggaacgcc ggtttcttga agcagcgacc aaaacccctg
    14641 accgtgcgcc tcgccgccgc ttcccgcgcg gcgcagcgag acggtaatca tcgcaggctg
    14701 ggcggtttgg atggattgtt tgaggatttc gggggtcggg taggcagccg tgccgagcag
    14761 cagccgtgaa gggaaagttt ctccgtatag ggtgagcata atgggttcct ttgtatagtg
    14821 gattaacaaa aaccagtacg gcgttgcctc gccttagctc aaagaaaacg attctctaag
    14881 gtgctgaagc accaagtgaa tcggttccgt actatccgta ctgtctgcgg cttcgtcgcc
    14941 ttgtcctgat ttaaagttaa tccaccataa cgttgttttg gggacagggg tcgtctgaaa
    15001 aggcaaaacc gcctagccgc cgacgacggg gcggacgata tcgattttgt cgttttcgtt
    15061 caaaaccgtt tccgcatacg cgcctttggg gatgaaaacg gtgttgaccg ccacggcaaa
    15121 gggctgttgc ggcgcggttt gggcgatgag gtcggcaacg cttgtgccgt gaagttcggc
    15181 gggtccgccg tttaagatga tgttcatggt ttctcgatgt ttct
//
LOCUS       DAXIFD010000032        15050 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.032, whole genome shotgun sequence.
ACCESSION   DAXIFD010000032 DAXIFD010000000
VERSION     DAXIFD010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15050
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.032"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(146..2617)
                     /locus_tag="ACFOCN_000718"
     CDS             complement(146..2617)
                     /locus_tag="ACFOCN_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6969906.1"
                     /translation="MKKTCFHCGLDVPEHLHLTVRYENEDRETCCAGCQAVAQSIIDA
                     GLGSYYKQRTADAQKTELPPQEILDQIRLYDLPEVQSDFVETHGGTREAVLMLGGITC
                     AACVWLIEQQLLRTDGIVRIDLNYSTHRCRVVWDDGKIRLSDILLKIRQIGYTAAPYD
                     AQKIEAANQKERKQYIVRLAVAGLGMMQTMMFALPTYLYGGDIEPDFLQILHWGGFLM
                     VLPVVFYCAVPFYQGALRDLKNLRAGMDTPIAVAIIMTFIAGVYSLATNAGQGMYFES
                     IAMLLFFLLGGRFMEHIARRKAGDAAERLVKLIPAFCHRMPGYPAVQDVREAAVVKLQ
                     AGDVVLVKPGETIPVDGTVLEGSSAVNESMLTGESLPVAKMPSEKVTAGTLNTQSPLI
                     IRTDRTGGGTRLSHIVRLLDRALAQKPRTAELAEQYASSFIFGELLLAVPVFIGWTLY
                     ADAHTALWITVALLVITCPCALSLATPTALAASTGTLAREGILIGGKQAIETLAQTTD
                     IIFDKTGTLTQGKPAVRRISLLRGTDEAFVLAVAQALEQQSEHPLARAILNCRISDGS
                     VPDIAIKQRLNRIGEGVGAQLTVNGETQVWALGRASYVAEISGKEPQTEGGGSAVYLG
                     SQSGFQAVFYLTDPLKDSAAEAVRQLAGKNLTLHILSGDRETAVAETARALGVAHYRA
                     QAMPEDKLEYVKALQKEGKKVLMIGDGINDAPVLAQADVSAAAAGGTDIARDGADIVL
                     LNEDLRTVAHLLDQARRTRHIIRQNLIWAGAYNIIAVPLAVLGYVQPWIAALGMSFSS
                     LAVLGNALRLHKRGKMQSEKMPSEQ"
     gene            complement(2614..3792)
                     /gene="hflX"
                     /locus_tag="ACFOCN_000719"
     CDS             complement(2614..3792)
                     /gene="hflX"
                     /locus_tag="ACFOCN_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HFC6969907.1"
                     /translation="MTGRTGGNGSTQAQPERVMLVGVMLDKDGTGSSATRLNGFQTAL
                     AEAVELVKAAGGDSVRVETAKRDRPHTALFVGTGKAAELSEAVAADGIDLVVFNHELT
                     PTQERNLEKELKCRVLDRVGLILAIFARRARTQEGRLQVELAQLSHLAGRLIRGYGHL
                     QSQRGGIGMKGPGETKLETDRRLIAHRINALKKQLVNLKKQRALRRKPRESGTIKTFA
                     LVGYTNVGKSSLFNRLTKSGIYAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDL
                     PHKLISAFSATLEETAQADVLLHVVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYN
                     KTDLLPSEEQNTGIWRDAAGKIATVRISVAENTGIDALREAIAEYCATAPNTDETEMP
                     "
     gene            complement(3797..5077)
                     /locus_tag="ACFOCN_000720"
     CDS             complement(3797..5077)
                     /locus_tag="ACFOCN_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HFC6969908.1"
                     /translation="MKSLFIRLLLLGSAAGVFYHTQNQSLPAGELVYPSAPQIRDGGD
                     ALHYLNRIRAQIGLHKLAHAPVLENSARRHARYLTLNPEDGHGEHHPDNPHYTAQKLT
                     ERTRLAGYLYNGVHENISTEEEAAESSDSDIRTQQRQVDGLMSAIYHRLSLLDRHTDE
                     AGAAFVRENGKTVLVFNQGNSRFERHCAQGRNQPEAGRKYYRNACHNGAVVYTDEAMP
                     AQELLYTAYPVGSGALPYFHGERPDPVPEYEITGNPASIDFSEAAGKITMKSFKLYQG
                     KNEIRPVRVLTAGNDPNGRLTAYQFALFPLKPLEYGTLYTAVFDYVRNGRRAQAKWQF
                     RTRKPDYPYFEVNGGETLAVRKGEKYFIHWRGRWCLEACTRYTYRQRPGSRLSIGRHE
                     AGGIVFSVDGMAGSRITLAPEGETERGVTLYLQD"
     gene            5079..5207
                     /locus_tag="ACFOCN_000721"
     CDS             5079..5207
                     /locus_tag="ACFOCN_000721"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969909.1"
                     /translation="MPSSRRGNGVFYQNGKLANAVSDCRLPNRQTFPRADAEPDAV"
     gene            complement(5230..5955)
                     /locus_tag="ACFOCN_000722"
     CDS             complement(5230..5955)
                     /locus_tag="ACFOCN_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HFC6969910.1"
                     /translation="METQNKPTVTDIDRPILVPPGGHKKVLLHSCCAPCSGEVMEAML
                     ASGIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGIPFIDKDDDYENDRKEWFAKAK
                     GMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSLGISRWKNMAQINDCGHRAA
                     APYDDVVYWDFNWRKGGGSARMIEISKRENFYQQEYCGCAYSLRDSNAHRKSQGRIPI
                     KLGVLYYGDESTQYEPAPIRVDK"
     gene            complement(6028..6705)
                     /gene="radC"
                     /locus_tag="ACFOCN_000723"
     CDS             complement(6028..6705)
                     /gene="radC"
                     /locus_tag="ACFOCN_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HFC6969911.1"
                     /translation="MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAV
                     DLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIV
                     LSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
                     ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVRSF
                     RQLGLMP"
     gene            6732..6854
                     /locus_tag="ACFOCN_000724"
     CDS             6732..6854
                     /locus_tag="ACFOCN_000724"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969912.1"
                     /translation="MPSETNVPTRQISEMPSEPDFRFRRHLYFKTVLRRFFQLD"
     gene            complement(6828..8177)
                     /gene="gshA"
                     /locus_tag="ACFOCN_000725"
     CDS             complement(6828..8177)
                     /gene="gshA"
                     /locus_tag="ACFOCN_000725"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HFC6969913.1"
                     /translation="MKLPVMSPEHSAQLQAFEAKILSNHAKIEAWFRTQWSVHRPPFY
                     GSVDIRNAGYKISSIDMNLFPGGFNNLNPNFIPLAAVAAQDAVQRACETAKSVLIIPE
                     NHTRNTFYLQNVYALGEILCSAGYEVRLGSLNPEVTEPTEFETALGDKILLEPLLRTR
                     DRVHLADGFSPCVVLLNNDLSAGIPDILKGISQTVLPPLHGGWTTRRKTNHFGAYNQV
                     AAEFAKLIGIDEWQINPYFEKIGGLDFQGREGEDALAEAVERVLAKIQAKYDESGITD
                     KPFVIVKADAGTYGMGVMSVKSADEVRGLNRKNRNKMAKVKEGLEVSEVIVQEGIYTY
                     ETLNSAVCEPVVYMMDRFVIGGFFRVHEGRGADENLNAGGMVFVPLSNSIPTGNGDNS
                     QEAPEACKRVFEQWDSLGMPRSEKDCDVDNEHNRLYVYGVMARLSLLAASIELEETA"
     gene            8437..9846
                     /gene="leuC"
                     /locus_tag="ACFOCN_000726"
     CDS             8437..9846
                     /gene="leuC"
                     /locus_tag="ACFOCN_000726"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HFC6969914.1"
                     /translation="MTAQTLYDKLWNSHVVREEEDGTVLLYIDRHLVHEVTSPQAFEG
                     LKMAGRKLWRIDSVVSTADHNTPTGDWDKGIQDPISKLQVDTLDKNIKEFGALAYFPF
                     MDKGQGIVHVMGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHTMATQCI
                     TAKKSKSMLIAVDGKLKAGVTAKDVALYIIGQIGTAGGTGYAVEFGGEAIRSLSMEGR
                     MTLCNMAIEAGARSGMVAVDQTTIDYVKDKPFAPEGEAWDKAVEYWRTLVSDEGAVFD
                     KEYRFNAEDIEPQVTWGTSPEMVLDISSKVPNPAEETDPVKRSGMERALEYMGLEAGT
                     PLNEIPVDIVFIGSCTNSRIEDLREAAAIAKDRKKAANVQRVLIVPGSGLVKEQAEKE
                     GLDKIFIEAGFEWREPGCSMCLAMNADRLTPGQRCASTSNRNFEGRQGNGGRTHLVSP
                     AMAAAAAVTGRFTDIRMMA"
     gene            9943..10197
                     /locus_tag="ACFOCN_000727"
     CDS             9943..10197
                     /locus_tag="ACFOCN_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969915.1"
                     /translation="MNKLFITALSALALSACAGTWEGAKQDTARNLDKTQAAAERAAE
                     QTGNAVEKGWDKTKEAVKKGGNAVGRGISHLGGKIENATE"
     gene            10259..10900
                     /gene="leuD"
                     /locus_tag="ACFOCN_000728"
     CDS             10259..10900
                     /gene="leuD"
                     /locus_tag="ACFOCN_000728"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HFC6969916.1"
                     /translation="MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFD
                     EWRYLDHGEPGMDNSKRPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDY
                     GFRAVIAPSFADIFFNNCYKNGLLPIVLTEEQVDRLFKEVEANEGYQLSIDLAEQTLT
                     TPGGETFTFDITEHRKHCLLNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFNG"
     gene            11070..12339
                     /locus_tag="ACFOCN_000729"
                     /pseudo
     CDS             11070..12339
                     /locus_tag="ACFOCN_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223735.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
     gene            12355..13086
                     /locus_tag="ACFOCN_000730"
                     /pseudo
     CDS             12355..13086
                     /locus_tag="ACFOCN_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229413.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0009036 - type II site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0090304 - nucleic acid metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NgoBV family restriction endonuclease"
     gene            13120..14190
                     /gene="leuB"
                     /locus_tag="ACFOCN_000731"
     CDS             13120..14190
                     /gene="leuB"
                     /locus_tag="ACFOCN_000731"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HFC6969917.1"
                     /translation="MTKHIAILRGDGIGPEIVAETVRVLDKLIAQGLDAGYEYAPLGG
                     EAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFA
                     NLRPAVLYPELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNT
                     MKYSESEIRRIAHVAFQSAQKRSKKVCSVGKANVLETTELWREIFEEIGKQYPDVELS
                     HMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLY
                     EPSHGSAPDIAGQNKANPLATILSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTSD
                     IYEEGTKLVSCSEMGDAVLAAL"
     gene            14327..14890
                     /locus_tag="ACFOCN_000732"
     CDS             14327..14890
                     /locus_tag="ACFOCN_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HFC6969918.1"
                     /translation="MKKIIFAALAAAAVGTASAATYKVDEYHANARFAIDHFNTSTNV
                     GGFYGLTGSVEFDQAKRDGKIDITIPVANLQSGSQHFTDHLKSADIFDAAQYPDIRFV
                     STKFNFNGKKLVSVDGNLTMHGKTAPVKLKAEKFNCYQRPMEKTEVCGGDFSTTIDRT
                     KWGVDYLVNVGMTKSVRIDIQIEAAKQ"
BASE COUNT         3615 a         4058 c         3881 g         3496 t
ORIGIN      
        1 aaataaaaat caaatgccta acaattcgat ctcaaatttt gaacgccaac gtgtttgagc
       61 ggtaacaata catactttaa gtttgcaatc cttcatcgtc ttatttttgt tttcatcaac
      121 tatacgtcta aagcaacgcc gtccgtcatt gttcggacgg cattttttca gactgcattt
      181 tcccccgttt gtgaaggcgc agggcgttgc ccaaaaccgc cagcgaactg aagctcatac
      241 ccagtgcggc tatccacggt tggacatagc ccaaaacggc aagcggtacg gcaatgatat
      301 tgtacgcgcc cgcccatatc aggttttgcc ggataatatg gcgggtgcgc cgcgcctgat
      361 cgagcaggtg ggcgacggta cgcaaatctt cgttcaataa cacaatgtcc gcgccgtccc
      421 tcgcaatatc cgtcccgccc gctgcggcgg cggatacgtc tgcctgcgcc aaaacgggcg
      481 cgtcgttgat gccgtcgcct atcatcagca cttttttccc ttctttttgc aaggctttga
      541 cgtattccag tttgtcctcg ggcatggctt gggcgcggta gtgcgcgaca cccagggcac
      601 gggcggtttc ggcaacggcg gtttcgcggt cgccgctgag gatgtgcagg gtcaggtttt
      661 tgcctgccaa ctgccgcacc gcctccgccg cgctgtcttt caaggggtcg gtcaggtaga
      721 acacggcttg gaaaccgctt tgactgccga ggtaaaccgc gctgccgccg ccttctgttt
      781 gcggttcttt acctgaaatt tcggcgacat aggatgccct gcccaatgcc caaacctgtg
      841 tttcgccgtt gacggtcagt tgcgcgccca cgccttcgcc gatgcggttg aggcgttgtt
      901 taatagcgat gtcggggacg ctgccgtctg aaatgcggca gttgaggatg gcgcgggcaa
      961 ggggatgttc ggactgttgt tctaaagcct gcgccaccgc gagaacaaag gcttcgtctg
     1021 tgcctctcaa caatgagata cggcggacgg cgggtttgcc ttgggtcagc gtgccggttt
     1081 tgtcgaagat gatgtcggtg gtttgggcga gggtttcgat tgcctgcttt ccgccgatta
     1141 aaataccttc gcgcgccagc gtaccggtag aagctgccag cgcggtcggc gtggcaagcg
     1201 ataaggcgca ggggcaggta atgaccagca gggcgacggt aatccacaat gcggtgtgcg
     1261 cgtcggcgta cagcgtccag ccgatgaaga cggggacggc aagcaggagt tcgccgaata
     1321 tgaaagacga ggcgtattgt tccgccaact cggcagtgcg cggtttttgc gctaaggcgc
     1381 ggtcgagcag gcggacgatg tgcgacagtc gcgtgccgcc gccggtgcgg tcggtgcgta
     1441 taatcagggg gctttgcgtg ttgagtgtgc cggcggttac tttttcagac ggcattttgg
     1501 cgacgggcag gctctcgccg gtcagcatag attcgttgac ggcactgctt ccttccagca
     1561 ccgtgccgtc aacggggatg gtttcgcccg gtttgaccag taccacatcg cctgcttgga
     1621 gcttgacgac ggcggcttcg cggacatcct gtacggcagg atagccgggc atccggtggc
     1681 agaaggcggg tatcagtttc accagccttt cggcagcatc gcctgccttg cgccgggcaa
     1741 tgtgttccat aaagcgtccg cccagcagga aaaacagcag catggcgatg gattcgaaat
     1801 acatcccctg ccccgcattg gtcgcaaggc tgtaaacgcc ggcgataaag gtcatgatga
     1861 tggcgacggc aatcggcgta tccatgccgg cgcggaggtt tttcaggtcg cgcaacgcgc
     1921 cttgataaaa cgggacggcg caatagaata cgacgggcag caccattaaa aagccgcccc
     1981 aatggaggat ttgcaggaaa tcgggttcga tgtcgccgcc gtaaaggtag gtcggcagcg
     2041 cgaacatcat cgtctgcatc atccccagcc cggcaacggc gaggcggacg atgtattgtt
     2101 ttcgttcttt ttggttggcg gcttcgattt tttgcgcgtc atagggtgcg gcggtgtagc
     2161 ctatctgcct gattttcaac agaatgtcgg aaaggcggat tttgccgtcg tcccagacga
     2221 cgcggcagcg gtgcgtgctg taattgaggt cgatgcggac gatgccgtct gtacgcaaaa
     2281 gctgctgttc gatcagccag acgcaggcgg cgcaggtgat gccgccgagc attaaaaccg
     2341 cctcgcgcgt gccgccgtgg gtttccacaa agtcggactg gacttcgggc aggtcgtaca
     2401 ggcggatttg gtcgaggatt tcttggggcg gcagctcggt tttttgcgcg tcggcggtgc
     2461 gttgtttgta ataactgccc aagcccgcgt caataatgct ttgtgcgacc gcctgacaac
     2521 cggcgcagca ggtttcgcgg tcttcgtttt cgtaacggac agtcaggtgg aggtgttcgg
     2581 gaacatccag accgcagtgg aaacaggttt ttttcatggc atttcggttt cgtctgtgtt
     2641 tggtgcggtg gcacaatact cggcaatggc ttcgcgcagt gcgtctatac cggtattttc
     2701 agcaacggaa atgcggacgg tggcaatttt tcccgcagcg tcgcgccata tgcccgtgtt
     2761 ttgttcttca gacggcagca ggtcggtttt gttgtacacc ttgatgcacg gaatatcgcc
     2821 ggcatggatt tcttgcagta cgttttccac gtcttcaatc tgctgtccgc tgttcggggc
     2881 ggcggcatcg acgacgtgca gcagcacatc ggcttgcgcg gtttcttcca gcgtggcgga
     2941 aaatgccgaa atcagtttgt gcggcaaatc actgacgaat ccgacggtat cggtcaggat
     3001 aatgctgcat tcgggactga tgtacagccg ccgcgccgtg gtgtcgagtg tggcgaaaag
     3061 ctggtctttc gcatatatgc ccgacttggt cagccggttg aacaggctgg atttgccgac
     3121 attggtatag ccgaccagcg caaacgtttt gattgtgccc gattcgcggg gcttgcggcg
     3181 cagggcgcgc tgttttttga ggttgacaag ctgttttttc aaggcattga tccgatgggc
     3241 gatcaatcgg cggtcggttt ccagtttggt ttcgccgggg cctttcatgc cgataccgcc
     3301 gcgctggctc tgcagatggc cgtaaccgcg tatcaagcgt cccgccaaat ggctcaattg
     3361 cgccaactcg acttgcagcc tgccttcctg cgtgcgggcg cggcgggcga aaatcgccag
     3421 aatcagccct accctgtcca atacgcggca tttcagttct ttttcaaggt tgcgttcctg
     3481 cgtgggcgtg agttcgtggt tgaatacgac caaatcgatg ccgtctgcgg caactgcttc
     3541 tgacagctcc gccgccttgc ccgtgccgac aaacagcgcg gtgtgcggac ggtcgcgttt
     3601 ggcagtctcc acgcgcacgg aatcgccgcc cgccgctttg accagctcga cagcttccgc
     3661 caatgccgtc tgaaaaccgt tcagacgggt ggcactgctg cccgtaccat ctttgtccaa
     3721 cattacgccc accagcatga cgcgttcggg ttgcgcttgg gtactgccgt tgccgcctgt
     3781 tctgcctgtc atgtattcaa tcctgtaaat aaagggttac gcctcgttcc gtttctcctt
     3841 ccggtgcaag cgtgatgcgg ctgcccgcca ttccgtcaac gctgaagacg atgccgcccg
     3901 cctcgtgcct tcctatggac aggcggctgc cgggtcgctg ccggtaggta taacgggtac
     3961 acgcttccaa acaccagcgt ccgcgccagt ggatgaaata tttttcgcct tttctaaccg
     4021 caagtgtctc gccgccgttt acctcaaaat aagggtaatc gggttttcgg gttctaaact
     4081 gccatttcgc ctgcgcgcgc cgtccgttgc ggacatagtc gaataccgcc gtataaagcg
     4141 tgccgtattc caaaggcttg agcggaaaaa gcgcgaattg gtacgcggtc agcctgccgt
     4201 tggggtcgtt gccggcggtt aaaaccctga cggggcggat ttcgttttta ccctgataca
     4261 gcttgaaact tttcatcgta attttgcctg ccgcctcgga aaaatcaatg ctggcaggat
     4321 tgcccgtgat ttcatattcc ggcacggggt ctggacgctc gccgtggaaa taaggcagtg
     4381 cgccgctgcc gacgggatag gctgtataga gcagctcctg tgcgggcatg gcttcgtcgg
     4441 tgtacacgac cgcaccgtta tggcaggcgt tgcggtaata tttccgtcct gcttccggct
     4501 gatttctgcc ttgggcgcaa tgccgctcaa acctgctgtt gccctgattg aatacgagaa
     4561 cggttttacc gttttcgcgc acaaatgccg ctcctgcctc atccgtatgg cggtcaagta
     4621 gggaaaggcg gtggtagatt gcgctcatta atccgtccac ttggcgttgc tgcgtgcgga
     4681 tgtcgctgtc ggacgattcg gcggcttcct cttccgtgct gatgttttca tgcacgccgt
     4741 tgtagagata cccggcaagg cgtgtgcgtt cggtcagctt ttgtgcggtg tagtgcggat
     4801 tgtcgggatg gtgttcgccg tgtccgtctt cgggattgag cgtgagatag cgtgcgtgcc
     4861 tgcgggcgga attttccaaa accggcgcgt gtgccagctt gtgcaaaccg atttgggcgc
     4921 ggatgcggtt gaggtagtgc agcgcatcgc cgccgtccct gatttgcggt gcggacggat
     4981 agacaagttc gcccgcgggc agggattggt tttgggtatg atagaaaacg cctgccgccg
     5041 aacccaacag gagcagccga ataaaaaggg atttcataat gccgtcctcc cgacgcggca
     5101 acggggtgtt ttatcaaaac ggcaaacttg ccaatgcggt ttccgattgc agattgccaa
     5161 accggcaaac ctttccccgt gccgatgccg aacctgatgc cgtctgaacc ttcagacggc
     5221 atcggatgtt tatttgtcca cccggatggg tgcaggttca tattgtgtcg attcgtcgcc
     5281 gtaatacagc acgccgagtt tgatggggat tctgccctgc gatttgcggt gggcattgga
     5341 atcgcgcaag gaataggcgc aaccgcaata ttcctgctgg tagaagtttt cacgtttgct
     5401 gatttcaatc atgcgcgcgc tgccgccgcc tttgcgccag ttgaaatccc aatacaccac
     5461 atcatcgtaa ggcgcggcgg cgcggtgtcc gcagtcgttg atttgcgcca tatttttcca
     5521 gcgtgaaatg cccagcgaac tggtaaagac ggggaacccg tgttcatgcg cgtattgcgc
     5581 cgccttttca aaacgcatat cgaaacacat ggtgcagcgg atgccgcgtt ccggctcaaa
     5641 ctccatgcct ttggctttgg caaaccattc tttgcggtcg ttttcgtagt cgtcgtcttt
     5701 atcgatgaaa ggaatgccga acttttccgc aaagcgcacg ttttcctctt ttcggagcat
     5761 atactctttg tgcggatgga tattgggatt gtaaaaataa atggtgtagt cgatgccgga
     5821 ggcaagcatc gcctccatca cttcgccgct gcacggggcg cagcaggaat gcagcaagac
     5881 ttttttatgt ccgccgggcg ggacgagtat ggggcggtca atgtcggtaa cggtaggttt
     5941 gttttgtgtt tccattaact taacaatatc tgttgaatac ggttgaagcg gctattttat
     6001 cagagccgcc gcatgtaaaa cagagtgtca gggcatcaac ccgagctgtc tgaacgaacg
     6061 gacgctttgc gaggtaacga taaaatggtc gagcagcgac acatcgacca gcgacattgc
     6121 ctgtgccagc cgccttgtga acatgatgtc ttcctgcgaa ggttcgggcg agccgcccgg
     6181 atggttgtgc gcgataatca ggctgtcggc atattcgtcc aatgccagtt tgacgatttc
     6241 gcggatgtaa atcgtgtttt ccgcaaccgt accgcgcgac agctctctga ccgcaatcag
     6301 ttggttttgg cggttcagca gcagcgcgac gctgacttcg actttttcct gccccaaatg
     6361 aaagcgtaaa taatcggcca ccgtatccgg atcggacagg acgatgctct cctgcaattc
     6421 ttccgccaat atccgccgcc cgatttccct gaccacggca aactgtgtga aacttgccgt
     6481 ccccatccct ttgtatgccg acagtttgcc gacctccgcg ctcatcagcc tccccaaact
     6541 gccgaactcc tgcagcaaat aacgcgccaa atcaaccgca ctcattccgc gcgtgccgac
     6601 gcgcagcagg attgccaaaa gttcggcatc actcaaagcc gccgccccgc gttccaacag
     6661 cttttccctg ggcctttccc cctccggcca ttgcttgatg ctcatgtttt ccctttttta
     6721 aatagtctga gatgccgtct gaaacaaatg ttcccacacg ccaaatatcc gaaatgccgt
     6781 ctgaaccgga tttccgcttc agacggcatc tgtatttcaa aacagtctta cgccgtttct
     6841 tccaactcga ttgaagccgc cagaagcgac aggcgtgcca ttacgccgta aacgtagagg
     6901 cggttgtgtt cgttgtccac gtcgcagtct ttttcagagc gcggcatacc cagcgagtcc
     6961 cattgttcga atacgcgctt gcaggcttcg ggcgcttctt gggaattatc gccgttaccg
     7021 gtaggaatgc tgttagacag cggaacaaac accataccgc cggcgttgag gttttcgtcc
     7081 gcaccgcgcc cttcgtgtac gcggaaaaag ccgccgatga cgaagcggtc catcatatac
     7141 acgacgggtt cgcacaccgc gctgtttaag gtttcataag tataaatccc ttcttggaca
     7201 atcacttcgc tgacttccaa accttctttg actttcgcca ttttattgcg gtttttacgg
     7261 ttcaatccgc gcacttcgtc ggcggatttg acgctcatca cgcccatgcc gtaagtgccg
     7321 gcatcggctt tgacgatgac gaaaggtttg tcggtaatgc ccgattcgtc gtatttggct
     7381 tgaattttcg ccagcacacg ttctaccgcc tccgccaacg cgtcttcgcc ttcacgccct
     7441 tggaagtcca aaccgccgat tttttcaaaa taagggttaa tttgccattc gtcgatgccg
     7501 attaacttgg caaattcggc ggcaacttgg ttgtacgcgc cgaaatgatt tgttttgcgg
     7561 cgcgtcgtcc aaccgccgtg caacggcggc aaaacggttt ggctgatgcc tttgaggatg
     7621 tcgggaatac cggcggacaa atcgttgttc aacaaaacca cgcaaggcga aaagccgtct
     7681 gcaagatgga cgcggtcgcg ggtacgcaat aaaggttcca acaggatttt gtcgcccaat
     7741 gcggtttcaa attcggtcgg ttcggttact tccggattca ggctgcccaa gcgcacttca
     7801 taccctgccg aacacaaaat ctcgccgagg gcgtaaacgt tttgcaggta aaacgtattg
     7861 cgcgtgtggt tttcgggaat aatcaatacg gatttcgccg tttcacaggc gcgttgcacc
     7921 gcatcttgcg cggcaaccgc cgccagcggg ataaagttgg gattcagatt attgaagccg
     7981 ccggggaaca aattcatatc gatagacgaa attttgtaac cggcattgcg tatatcgacc
     8041 gaaccgtaaa acggcgggcg gtgtacgctc cactgcgtgc ggaaccacgc ctcgattttg
     8101 gcgtgattgg acaggatttt tgcctcaaac gcctgaagtt gcgccgaatg ttcgggcgac
     8161 atcaccggta atttcatctt tcgtctgcct ctgtgtgttt tttgacaaga tgcagatgat
     8221 aatgcctttg aaagaatgac gacaagtatt ctttcgtatc gaatcatgct ttagatataa
     8281 ctgtttactg aaatggacaa tatgtctaat tttttcgtta aaattgtttg caaaataaca
     8341 ccggctcaaa aattagacaa aatttgttgc gcggtataaa gaatacgtct aaaatccgcc
     8401 caatccgcat taccatttat ccaaaagaac aacatcatga cagcacaaac cctctacgac
     8461 aaactttgga acagccacgt cgtccgcgaa gaagaagacg gcaccgtcct gctctacatc
     8521 gaccgccatt tggtgcacga agttaccagc cctcaggcat ttgaaggctt gaaaatggcg
     8581 gggcgcaagc tgtggcgcat cgacagcgtc gtctccaccg ccgaccacaa caccccgacc
     8641 ggcgattggg acaaaggcat ccaagacccg atttccaagc tgcaagtcga tactttggac
     8701 aaaaacatta aagagtttgg cgcactcgcc tattttccgt ttatggacaa aggtcagggc
     8761 atcgtacacg ttatgggccc cgaacaaggc gcgaccctgc ccggtatgac cgtcgtctgc
     8821 ggcgactcgc acacttccac ccacggcgca ttcggcgcac tggcgcacgg catcggcact
     8881 tccgaagtcg agcacacgat ggcgacccag tgcattaccg cgaaaaaatc caaatccatg
     8941 ctgattgccg ttgacggcaa attaaaagcg ggcgttaccg ccaaagacgt ggcactttac
     9001 atcatcgggc aaatcggcac ggcgggcggt acaggctacg ccgtcgagtt tggcggcgaa
     9061 gccatccgca gcctttctat ggaaggccgc atgactttat gcaatatggc gatcgaagcc
     9121 ggtgcgcgct caggcatggt tgccgtcgac caaaccacca tcgactatgt aaaagataaa
     9181 cccttcgcac ccgaaggcga agcgtgggac aaagccgtcg agtactggcg cacgctggtg
     9241 tctgacgaag gtgcggtatt cgacaaagaa taccgtttca acgccgaaga catcgaaccg
     9301 caagtcactt ggggtacctc gcctgaaatg gttttagaca tcagcagcaa agtgccgaat
     9361 cctgccgaag aaaccgatcc ggtcaaacgc agcggtatgg aacgggccct tgaatacatg
     9421 ggcttggaag ccggtacgcc attaaacgaa atccccgtcg acatcgtatt catcggctct
     9481 tgcaccaaca gccgcatcga agacttgcgc gaagccgccg ccatcgccaa agaccgcaaa
     9541 aaagccgcca acgtacagcg cgtgttaatc gtccccggct ccggtttggt taaagaacaa
     9601 gccgaaaaag aaggcttgga caaaattttc attgaagccg gttttgaatg gcgcgaaccg
     9661 ggctgttcaa tgtgtctcgc catgaacgcc gaccgcctga ccccggggca acgctgcgcc
     9721 tccacctcca accgcaattt tgaaggccgt caaggcaacg gcggacgtac ccacctcgtc
     9781 agccccgcta tggcagccgc cgccgccgtt accggccgct ttaccgacat ccgcatgatg
     9841 gcgtaagtat tttcaggcgg tctttaagaa tttgacgcgg ccgtctgaaa tatgtcccgt
     9901 aaggcagaaa cacctttaat attcaaacca aggagtttaa ccatgaacaa acttttcatt
     9961 accgccctgt ccgccctcgc cttgtccgcc tgcgccggca cttgggaggg cgcgaaacaa
    10021 gacaccgccc gcaaccttga caaaacacag gccgccgccg aacgcgccgc cgaacaaaca
    10081 ggcaacgccg tcgaaaaagg ctgggacaaa accaaagaag ccgtcaaaaa aggcggcaat
    10141 gccgtcggac gcggcatttc ccatctcggc ggaaaaatcg aaaacgccac cgaataaccg
    10201 attcgcgatg ccgtctgaaa ccgcttcaga cggcatcgtc agcacaagac gcaaacccat
    10261 gaaagccttt accaaaatta ccgccatcgt cgccccgctc gaccgcagca acgtcgatac
    10321 cgacgccatc atccccaaac aatttctgaa atccatcaaa cgcagcggtt tcggccccaa
    10381 tgcctttgac gaatggcgtt acctcgacca cggcgaaccg ggcatggaca acagcaaacg
    10441 cccgttgaac cctgatttct cgctgaacca gccgcgttac caaggcgcgc aaatcctgtt
    10501 gacgcgtaaa aacttcggtt gcggctcttc acgcgaacac gccccttggg cattggacga
    10561 ctacggcttc cgcgccgtca tcgcccccag cttcgccgac atcttcttca acaactgcta
    10621 caaaaacggc cttttaccta tcgtgttgac cgaagaacaa gtcgatcggc ttttcaaaga
    10681 agttgaagcc aacgaaggct atcagctctc catcgacctt gccgaacaaa ccctgaccac
    10741 ccctggcggc gaaacattca cattcgacat taccgaacac cgcaaacact gcctcttaaa
    10801 cggcttggac gaaatcggac tgaccctgca acatgccgat gaaattcacg cctttgaaga
    10861 aaaacgccgc caaagccagc cttggctgtt taacggttaa aacctatgcc gtctgaaggc
    10921 cgttcagacg gcatttctga taacatataa ttgctgcaac tgatgtaaac agagggatta
    10981 tcaattgctt tcatctttca agcgggctta gcaacgctct aaattaatgc aatacaactc
    11041 tatttcaaat aaatttttag atttttaata tgcaacaaat taaatttatt gacttatttt
    11101 ccggaatgag tggcatcagg aaaggattcg aacaagcctg tcggaaacag tcggttgctt
    11161 gcgaatgtgt ttttacttca gaaatcaaac cggcagcttt ggaagtattg aagcaaaact
    11221 accctgatga agtgccgtat ggagacataa cgaaaattga aacaggggat attcccgatt
    11281 ttgacattct gttggcaggc ttcccttgtc aggctttttc tttcgccgga aaaagattgg
    11341 gctttgaaga tacacgggga acgcttttct ttgatgtggc aaggatttta aaagcaaaaa
    11401 aaccaaaagg ttttattttg gaaaatgtgg aaggattggt gacacacgat agaaaagatt
    11461 cgacacaaaa atagggcgca ccctgaccgt tattttggaa accttggaag cattgggcta
    11521 ctatgtttct tggaaagttt taaatgcaaa agatttcggc attccccaaa acaggaagcg
    11581 catttatctg acaggcagtt tgaaatccaa acccgactta tctttcgaaa caagcccaag
    11641 tccgaaatta aaaaatattt tggaatcggg actgcctact gaaagcagcc ctttcatcaa
    11701 gaaattgcta aaaaaatttc ccccgtccga actgtacgga aaatcagtaa aagacaaacg
    11761 gggagggaaa aacaatattc acagttggga tattgaatta aaaggcgcag taaccgaaga
    11821 agagaagcaa ttgttaaata tccttctaaa agaacggagg aaaaaaaatg ggcttcagaa
    11881 atcggcatag attggatgga tgggatgcct ttgacaaaag cgcaaatttc aactttctat
    11941 aaacaccccg atctccaaaa tattttggac agcctgacag ataaaggcta tttggtttta
    12001 gagcatccga aacaaaaaat tggcgggcaa agaatcaaag atgaatccct gcccaaaggc
    12061 tacaatattg tttcaggtaa aaaatctttt gaaatcaata aaatattaga tccaaacgat
    12121 gttgcgccaa ccttggttgc aatggatatg gagcaccttt tcgtcgttga caacggcggt
    12181 ttgcgtacac ttaccggaaa agaagggttg cgcttattcg gctatccgga cgattattcg
    12241 tttgatattc ccaaaaaaga cagatgcgat ttattgggta ataccgttgc cgtccctgtg
    12301 attaaggcgg tatctgaaag acttctgcat actttataaa ccgacaggga taaaatgata
    12361 aaacttactg cacaacaaat atttgataag ttgctggatg aagaaaaaat cttatcggcc
    12421 aatggtcaaa ttagattttt cttgggcgat gtggatatta tcgtcaaaca aaaagatgtt
    12481 gtcggcaaca tcattcagga atggctcggc ggatgattga gaaaaaggga aattgaattt
    12541 gatgtttcaa ccaataccca aatgcctccc gatttctttt taaataaaaa agaccgcagc
    12601 agagaattgt tggaagtaaa ggcgttcaac cgaaataccg gcccgggttt tgatattgca
    12661 gattttaaaa tgtattctga tgaaatcatt cataagccct atatgctgga tgtagactat
    12721 ttaatattcg gttacgatat ggacgacaac ggcaatgtaa ccatcaagga tttatggctt
    12781 aaaaaagtat ggcaaattac gagaagcatg gatgggtggg caattaatct tcaagtcaaa
    12841 aaaggcgtgg tgcataaaat ccgcccgggt gtttggtaca gcataaataa aaagaatatg
    12901 cctatgtttg aatgcttgga agattttgtt tccgcaattg aagaaaccgt ttatcaaaac
    12961 ccggcaacac ggcataacgc atccttatgg aaaaagaaat ttgaggaagc ctataaaaaa
    13021 cactacaacc gatcgatttc catacctcgt tggcacgaaa ttgcacacaa atacaaaaag
    13081 aaataaccct tcaaccatca acccataagg aaacttgaaa tgaccaaaca tatcgccatc
    13141 ctccgaggtg acggcatcgg tcccgaaatc gtcgccgaaa ccgtccgcgt actcgacaaa
    13201 ctcatcgccc aaggtttgga tgccggctac gaatacgccc cattgggcgg cgaagcctat
    13261 gacgaatacg gtcatcctta tcccgaattt acgcaaaacc tctgccgcaa agccgatgcc
    13321 gtcctgcttg gtgcagtcgg ttctcctcaa tacgacaacc tcgaccgtcc gttgcgccct
    13381 gagcgcggcc tgttggcaat ccgtaaggat ttgaacctgt ttgccaattt gcgtcctgct
    13441 gttttatatc ccgaattagc caacgcctcc acgctgaagc ctgaaatcgt tgccggtttg
    13501 gatattttga ttgtgcgcga actcaccggc gacatctatt tcggcgaacc gcgcggcatc
    13561 cgcgttctgg aaaacggcga acgcgaaggc tacaacacca tgaaatacag cgaaagcgaa
    13621 atccgccgta tcgcccacgt cgctttccaa tccgcccaaa aacgcagcaa aaaagtctgc
    13681 tccgtcggca aagccaacgt tttggaaacc accgaactgt ggcgcgaaat ttttgaagaa
    13741 atcggcaaac aataccctga tgtcgagctt tcccatatgt atgtggacaa tgccgctatg
    13801 cagttggtac gcgcgcccaa acaatttgac gtgattgcca ccggcaacat cttcggcgat
    13861 attttatcgg acgaggcctc tatgctgacc ggctccatcg gtatgctgcc ttctgcttct
    13921 ttggacgaaa acggcaaagg cctgtacgaa ccgtctcacg gctccgctcc cgacatcgcc
    13981 ggacaaaaca aagccaaccc gctggccacc atcctctcgc tcgcaatgtt gctgcgttac
    14041 agcctgaacg acgaagcgcg cgcgcaacaa gttgaaaacg ccgtccaaaa agtgctgcaa
    14101 caaggcttgc gtaccagcga catttacgaa gaaggcacaa aactcgtttc ctgctccgaa
    14161 atgggcgatg cggtactcgc cgccttgtaa aaaaacaaag cgcggatttc cgctcgcccc
    14221 gttcgtcaac cgcctgcaaa gccaccgttt accggcagga aatgccataa atccccgcct
    14281 atgttaggat aaacgccttt actggctcac acaaaggatt atcatcatga aaaaaatcat
    14341 cttcgccgca ctcgcagcgg cagccgttgg cactgcctcc gccgccacct acaaagtgga
    14401 cgaatatcac gccaacgccc gtttcgccat cgaccatttc aacaccagca ccaacgtcgg
    14461 cggtttttac ggtctgaccg gttccgtcga gttcgaccaa gcaaaacgcg acggtaaaat
    14521 cgacatcacc atccccgttg ccaacctgca aagcggttcg caacacttta ccgaccacct
    14581 gaaatcagcc gacatcttcg atgccgccca atatccggac atccgctttg tttccaccaa
    14641 attcaacttc aacggcaaaa aactggtttc cgttgacggc aacctgacca tgcacggcaa
    14701 aaccgccccc gtcaaactca aagccgaaaa attcaactgc taccaacgcc cgatggagaa
    14761 aaccgaagtt tgcggcggcg acttcagcac caccatcgac cgcaccaaat ggggcgtgga
    14821 ctacctcgtt aacgttggta tgaccaaaag cgtccgcatc gacatccaaa tcgaggcagc
    14881 caaacaataa atcttgatgc gaatcagcac aaatgccgtc tgaacgtcct tcaaacggca
    14941 tttgtgccgt cttcatcaaa ccgccccgcc aacggtaagc cgatatggcg gagcacaatc
    15001 cgccgaaaga tatttcagcg gcaggcaggg cttgccggaa agtccggaaa
//
LOCUS       DAXIFD010000033        14902 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.033, whole genome shotgun sequence.
ACCESSION   DAXIFD010000033 DAXIFD010000000
VERSION     DAXIFD010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14902
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.033"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(87..3572)
                     /gene="smc"
                     /locus_tag="ACFOCN_000733"
     CDS             complement(87..3572)
                     /gene="smc"
                     /locus_tag="ACFOCN_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HFC6969919.1"
                     /translation="MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAV
                     RWVLGEASAKQLRGESMQDVIFNGAATRRPAPRASVELVFDNSDHSLQGAWGQYAEVS
                     IKRQLTRQGESTYFINNQTVRRRDITDLFLGTGVGARGYAVIEQGMISRIIEARPEEL
                     RAYIEEAAGVSKYKERRKETEGRLKDTREHLQRLGDLQNELARQVEKLEKQAETAERY
                     KSLTAQLNRQQDLLDYAQWQQSLAAADKATEQHQSLQAQQDETAAQVQALNDEVHALQ
                     TAEQSQQQAVHELSNKRGVLREQIARLEEQIRHQQNLHQRIERDKQAAQAQLQRIHQE
                     QQQIRVQLEENELYVEEKQTELAEWAMQVAEHEERLPELEETQTALNAAFQTQQDEAN
                     RIRRELALKQQQLAHAEQTVAKHEERKGRLKQENQALNLPDEAETAAVQEAAALLQSR
                     QEHYEEQIIAAEEALHAAREAFQTASNRFQSLKQQHITLQAQQQALSQILSQQQEAAD
                     FWQATDHAAAPQLWQHITAPAEWQHALSVILAERLHARAVPQGFVPPEPLPQGQAAWL
                     SDGLSGGIKKSLPVQALLNQIQAQPPFQTALHYWLDGVLCAPDLSYALAHQNDLGAHQ
                     IWLTPEGHQVDKVSVLLYAKPAQESLIAQKARLDGIASELENLAPELSAAEAAFKQAE
                     AAVRSSEVQHKNLMQQQQQHTRQYSQAQQRAAELLARTNQGQIRREHIERELAQLAEE
                     QTVLQHTSDGLSDDIVTLQEAAAELEHQQQTTAHSRQEQQGRLKQAQLALLEANRQYG
                     LAEVAVHKLNQQKQNYRQQIAQLEQQTLDWQERQQELVLAYETEFQNDEQHIKLDELT
                     ESVHTLDEEYIAVQEKLTQIQEQGREQYARVQTLQTQLPQLQAATQTALLQQQEALIN
                     AKRYHQNLTERAADLDALEALAKESPKVLNSSIGSLSQQIEALGAVNLAALQELEEAR
                     ERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFFPTLFGGGE
                     ATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSLNPAPFCL
                     LDEVDAPLDDANTSRFCNLVKEMSAQTQFLYISHNRLTMEMAEQLVGVTMQEKGVSRV
                     VAVDIKQALEMAEAV"
     gene            3574..3825
                     /locus_tag="ACFOCN_000734"
     CDS             3574..3825
                     /locus_tag="ACFOCN_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009345706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969920.1"
                     /translation="MVGKNKKEAYFNGNPAAPPHILPAKPYRIPHPRCRLKPSDGIFN
                     APEPRFRQRPMLGAAFAVLPRRRARYNPPRHPPDLETCL"
     gene            3822..4544
                     /gene="lpxH"
                     /locus_tag="ACFOCN_000735"
     CDS             3822..4544
                     /gene="lpxH"
                     /locus_tag="ACFOCN_000735"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008758 - UDP-2,3-diacylglucosamine
                     hydrolase activity [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HFC6969921.1"
                     /translation="MKPAYFISDLHLSEKHPELTALLLRFLRSSAAGQARAVYILGDL
                     FDFWVGDDEVSELNTSVAREIRKLSDKGVAVFFVRGNRDFLIGQDFCRQAGMTLLPDY
                     SVLDLFGCKTLICHGDTLCTDDRAYQRFRKIVHRKRLQKLFLMLPLKWRTRLAAKIRR
                     VSKMEKQVKPADIMDVNAAFTARQVRAFNAERLIHGHTHREHIHHENGFTRIVLGDWH
                     NDYASILRVDGDGAVFVPLEKC"
     gene            4813..6399
                     /locus_tag="ACFOCN_000736"
     CDS             4813..6399
                     /locus_tag="ACFOCN_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HFC6969922.1"
                     /translation="MALFLSIFPIVLLIWLMVKKNSMPSYVALPITAVLIYAIKLFYF
                     GDAGMLLNATAASGLVKTLTPITVIFGAIMFNRMMETTGCIDVIRKWLATISPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILMSLGFNPLKVAIFTLVMNSVPVSFGAVGT
                     PTWFGFAPLNLSAEDILAIGRQTGVMHFFAGFVIPVIGLGFIVPWSEIRKNLGFVAIA
                     VFSCTIPYVALAMVNEEFPSLVAGAIGLMVSVFAANQGWGLSKDHAKDPNAEKVPFAQ
                     VAKALAPLGMLIGMLVVTRIKQLGIKGILTSKEEWFSFQLPFDLSKITVSDSLTITFG
                     NIFGQDVSASYQTLYVPAWIPFVLTVWICILLYKTKFKDAWTIYSVTFNQTKKPLLAL
                     MGALIMVQLMLVGGDNSMVKIIGKEFAAMAGEHWVYFSPYLGAIGAFFSGSNTVSNLT
                     FGPIQQQIALDTGLSVTLILALQSVGGAMGNMVCLNNIIAVCTVLDVKNSEGAIIKKT
                     VIPMAIYGVIAVVAAMIFFL"
     gene            complement(6567..6770)
                     /locus_tag="ACFOCN_000737"
     CDS             complement(6567..6770)
                     /locus_tag="ACFOCN_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HFC6969923.1"
                     /translation="MDNLNLQEISVLPENLPLYCSGPDNEQWNGHPRVFLPLCEGESG
                     SVACPYCGTRYRLDGKMPHHHYA"
     gene            6886..7383
                     /locus_tag="ACFOCN_000738"
     CDS             6886..7383
                     /locus_tag="ACFOCN_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-mimic protein DMP19"
                     /protein_id="HFC6969924.1"
                     /translation="MTALTLPEDIRQQEPSALLYPLVSAYLEHTAQTGDESLSCLSDD
                     QHTLTAFCYLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKAL
                     YEQHGKTIETLADGGADIESLRKQFPDFEEWDGAYYEAAEQDLPLLAEHIQSNWETFA
                     HIGQA"
     gene            7465..8658
                     /locus_tag="ACFOCN_000739"
     CDS             7465..8658
                     /locus_tag="ACFOCN_000739"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HFC6969925.1"
                     /translation="MFFKHIEAAPADPILGLGEAFKAETRPEKVNLGIGVYKDASGAT
                     PLVKAVKEAEKRLLESETTKNYLTIDGVADYNAQTQILLFGKDHEIIASRRAKTAQSL
                     GGTGALRIAAEFAKRQLNAQTIWISNPTWPNHNAIAKAVGIQDKPYRYYDAAKHGLDW
                     DGMIEDLSQAQKGDIVLLHGCCHNPTGIDPTPEQWETLAKLSAEKGWLPLFDFAYQGF
                     GNGLEEDAYGLRVFLKHNTELLIASSYSKNFGMYNERVGAFTLVAEDEATAARAHSQV
                     KTIIRTLYSNPASHGANTIALVLKNDDLKAQWIAELDEMRGRIKAMRQKFVELLKAKG
                     ASQDFDFIIEQNGMFSFSGLTPEQVDRLKNEFAIYAVRSGRINVAGITDDNIDYLCES
                     IVKVL"
     gene            complement(9061..9996)
                     /gene="hemC"
                     /locus_tag="ACFOCN_000740"
     CDS             complement(9061..9996)
                     /gene="hemC"
                     /locus_tag="ACFOCN_000740"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HFC6969926.1"
                     /translation="MNPKKLVIASRESLLAMWQAKHIQGRLKALYPDCEVEILGMTTR
                     GDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALAAIGERA
                     NPFDAFVSNQYARLEEMPKGAVVGTSSLRREAQLRARYPHLLIKPLRGNVQTRLSKLD
                     NGEYDAIILAAAGLQRLKLDGRIRMILSESDSLPAAGQGALGIEIAAHREDLYEVLKP
                     LNHDTTHACVTAERALARALGGSCQVPLAAYCTEENGLLTLRGLVGHPDGSVVLQADA
                     QAPAEYADALGRAVAKKLADDGARELIGAVLNTEN"
     gene            10115..10630
                     /gene="ybeY"
                     /locus_tag="ACFOCN_000741"
     CDS             10115..10630
                     /gene="ybeY"
                     /locus_tag="ACFOCN_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HFC6969927.1"
                     /translation="MKRTKKYPFLTLQRQRFHLNFENASSAAGIPAERDFYRWAWSAL
                     KNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDL
                     IICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMLAA
                     GFPNPYQEDEY"
     gene            10632..11456
                     /locus_tag="ACFOCN_000742"
     CDS             10632..11456
                     /locus_tag="ACFOCN_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HFC6969928.1"
                     /translation="MDGTQSKPKFFERLISRLAGEPDSAEDVLTLLRQAHEQEVFDAD
                     TLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD
                     EVLGILHAKDLLKYMFNPEQFHLKSILRPAVFVPEGKSLTALLKEFREQRNHMAIVID
                     EYGGTSGLVTFEDIIEQIVGEIEDEFDEDDSADNIHAVSSERWRIHAATEIEDINTFF
                     GTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRVK"
     gene            complement(11585..12964)
                     /gene="nhaC"
                     /locus_tag="ACFOCN_000743"
     CDS             complement(11585..12964)
                     /gene="nhaC"
                     /locus_tag="ACFOCN_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HFC6969929.1"
                     /translation="MFAFKSLLDMPRGEALAVVVALIAAMGYTIISLEWLPHMSIIAA
                     IVVLILYGLARGLKYNDMQQGMIGALNQGMGAIYLFFFIGLMVSALMMSGAIPTLMYY
                     GFGLISPTYFYFSAFALCSVIGVSIGSSLTTCATVGVAFMGMAAAFQADMAMTAGAIV
                     SGAFFGDKMSPLSDTTGISASIVGIDLFEHIKNMMYTTIPAWLISAALMLWLLPNVAA
                     QDLNSVESFRSQLEATGLVHGYSLIPFALLVILALMRINAVVAMLFTVMVAVAVTYLH
                     STPDLRQLGAWFYGGYKLEGEAFKDVVKLISRGGLESMFFTQTIVILGMSLGGLLFAL
                     GVIPSLLEAIRTFLTNAGRATFSVAMTSVGVNFLIGEQYLSILLSGETFKPVYDRLGL
                     HSRNLSRTLEDAGTVINPLVPWSVCGVFISHALGVPVWEYLPYAFFCYLSLALTLLFG
                     WTGLTLSKK"
     gene            complement(13255..14478)
                     /locus_tag="ACFOCN_000744"
     CDS             complement(13255..14478)
                     /locus_tag="ACFOCN_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HFC6969930.1"
                     /translation="MSAQSQNNHTSPLVVLTTLFFMMGFITCMNDILIPHLKEIFDLS
                     YVQAMLIQFCFFTAYAVMSIPMGAFVGKVGYKNGVIGGFLLTAVGCLLFYPAAGSHSY
                     AVFLGALFILASGVTLLQVAGNPYVTLLAKPGKESATLTLVQAFNALGTTIAPQIGAF
                     LILADATQTVSKAEQISSVQIPYLGLAGLLIILAVFVKMIRLPDARKIAAEESAHNHD
                     GKTGVWQYKHLVFGTAGIFCYVGAEVSIGSLMVNVLGYLKGLDHASAAHYLSFYWGGA
                     MVGRFLGSAVMAKFAPNRYLAFNASAAVVLLAIAMATGSGNADVAMWSLLAIGFFNSI
                     MFPTIFSLATKGLGKFTNAASGVLCTAIVGGAVVPVVQGWVADTYTLMSSFVVSVICY
                     LYIVFFAVYGYRADK"
BASE COUNT         3516 a         4198 c         3830 g         3358 t
ORIGIN      
        1 tttaaattta attcactata ccgtctgaaa acctgtatcg caacacgtca ttaaaaacgg
       61 caagattcag ccgttctgca acccgttcaa acggcttccg ccatttccaa cgcctgcttg
      121 atgtccacgg cgacgacgcg cgatacgcct ttttcctgca tggttacgcc gaccagctgc
      181 tctgccattt ccatggtcag gcggttgtgg gagatgtaga ggaactgggt ttgcgccgac
      241 atttctttga ccaggttgca gaaacgcgag gtgttggcgt cgtccagcgg ggcatcgacc
      301 tcgtccaaaa ggcagaacgg agcggggttg aggctgaaca gagcgaacac gaggctcatg
      361 gcggtgaggg ctttttcgcc gccggagagg aggtggatgg tgctgttttt cttgccgggc
      421 ggacgcgcca taatggacac accggcggtc agtaggtcgt cgcctatcat tttgagagtg
      481 gcttcgccgc cgccgaacag ggtcgggaag aaggtttgga ctttgccgtt gacggcgtcg
      541 aaggtttctt tgaaacgcgc tttggttttg tcgtcgattt gggcgatggc ttcttccaaa
      601 atggtgatgg cggcctgcac gtcttcgctt tggctgcggt agtagccgtc gcgttcgcgc
      661 gcttcttcga gttcttgcag ggcggcgagg ttgaccgcgc cgagggcttc gatttgttgc
      721 gagaggctgc cgatgctgct gttcaatact ttcggcgatt ctttcgccaa cgcttcgagc
      781 gcatccaaat cggcggcgcg ttcggtcagg ttttgatggt agcgtttggc gttgatcagg
      841 gcttcctgtt gttgcaacag ggcggtttgg gtggcggcct gaagctgtgg caactgggtt
      901 tgcagggttt gtacgcgggc gtattgttcc ctaccctgct cctgaatctg cgtgagtttt
      961 tcctgcacgg cgatgtattc ttcgtccagc gtgtgtacgg attcggtcag ctcgtcgagc
     1021 ttgatgtgct gctcgtcgtt ttggaactcg gtttcatagg cgaggacaag ctcttgctgg
     1081 cgttcctgcc agtcgagggt ttgctgttca agctgggcga tttgctgccg gtagttttgt
     1141 ttttgctggt tgagtttgtg gacggcgact tcggcaagcc catattggcg gttggcttcc
     1201 aacagggcaa gctgcgcctg tttcagacgg ccttgctgct cttggcggct gtgcgcggtg
     1261 gtttgctgct ggtgttcgag ttcggcggcg gcttcctgca aggtaacgat gtcgtctgaa
     1321 agcccgtcgg acgtgtgttg caacacggtc tgttcttccg ccaactgcgc cagttcgcgc
     1381 tcgatgtgtt cgcggcggat ttgcccttgg ttggtacgcg ctaagagttc ggcggcgcgt
     1441 tgctgcgcct gactgtattg gcgcgtgtgc tgctgttgct gctgcatcag gtttttatgt
     1501 tgcacttcag acgagcgcac ggcagcttcc gcctgtttga acgcggcttc ggcggcggaa
     1561 agttcggggg cgaggttttc cagttcggac gcgatgccgt cgaggcgcgc tttttgggca
     1621 atcaggcttt cctgcgcggg tttggcatag agcaggacgc tgactttatc gacctgatga
     1681 ccttcgggcg tgagccagat ttggtgtgcg cccaaatcgt tttgatgcgc gagggcatag
     1741 ctcaaatcgg gcgcgcacaa tacgccgtcg agccagtagt gcaatgccgt ctgaaacggc
     1801 ggctgcgctt ggatttggtt cagcaatgcc tgtacgggca gggatttttt gatgccgccg
     1861 gagagaccgt ctgaaagcca cgccgcctgc ccctgcggca aaggttcggg cggtacgaaa
     1921 ccttgcggca cggcgcgggc gtgcaggcgt tctgcaagga tgacggacaa ggcgtgctgc
     1981 cactcggcag gcgcggtgat gtgttgccac agctgcggcg cggcggcgtg gtcggttgcc
     2041 tgccagaaat cggctgcttc ctgctgttgc gacaggattt gcgacaacgc ctgctgctgc
     2101 gcctgcaagg tgatatgttg ctgcttcagg ctttggaagc ggtttgaggc cgtctgaaac
     2161 gcctcgcggg cggcgtgtaa ggcttcttcg gcggcgatga tttgttcttc gtaatgctct
     2221 tgccggcttt gcaacaaggc agcggcctcc tgcacggcgg cggtttccgc ttcgtcgggc
     2281 aggttcaggg cttggttctc ctgtttcaga cggcctttgc gctcttcgtg cttggcaacg
     2341 gtttgttcgg catgggcaag ctgctgctgc ttcaacgcca gttcgcggcg gatgcggttt
     2401 gcctcgtcct gctgggtttg gaaggcggca ttgagcgcgg tttgggtttc ttccaattcg
     2461 ggcagacgct cttcgtgttc ggcaacctgc atcgcccact ccgccagctc ggtttgcttt
     2521 tcttcgacgt ataactcgtt ttcttcaagc tgcacgcgga tttgctgctg ctcttgatga
     2581 atacgctgca actgcgcctg cgccgcctgc ttgtcgcgtt cgatgcgttg gtgcaggttt
     2641 tgctgatggc ggatttgttc ttccaaacgg gcaatctgct cgcgcaacac gccgcgcttg
     2701 ttgctcaatt catgcaccgc ctgttgctgc gactgttcgg cggtctgcaa ggcgtgtact
     2761 tcgtcgttta acgcctgaac ctgcgcggcg gtttcgtcct gctgcgcctg caaagactga
     2821 tgctgctcgg tcgccttgtc ggcggcggca agcgattgct gccattgggc gtaatcgagc
     2881 aaatcctgtt gccggttcaa ctgcgcggtc agggatttgt agcgttcggc ggtttccgcc
     2941 tgtttctcca gcttttccac ctgacgcgcc aattcgttct gcaaatcgcc caaacgctgc
     3001 aaatgctcgc gcgtgtcttt cagacggcct tccgtctcct tgcggcgttc cttatatttg
     3061 gacacacctg ccgcctcctc gatataggcg cgcaattcct ccggccgcgc ttcgatgatg
     3121 cgcgaaatca tcccctgctc gataacggca taaccgcgcg cgcccacgcc cgtacccaaa
     3181 aataaatcgg taatgtcgcg gcggcgcacg gtctgattat tgatgaaata agtcgattcg
     3241 ccctgccgcg tcagctgccg cttgatgctc acctcggcat actgccccca cgcgccctgc
     3301 aaactgtggt cgctgttgtc aaacaccagc tccaccgaag ctcttggcgc aggacggcgc
     3361 gttgccgcac cgttaaaaat cacgtcctgc atactctcgc cgcgaagctg cttcgccgaa
     3421 gcctcgccca acacccagcg caccgcgtca atcacattcg acttgccgca gccgttgggc
     3481 ccgataaccg cgacaagctg ccccggcaca tgaattgtgg tcgggtcggt aaaagatttg
     3541 aagccggaga gtttgatatg ggtcaggcgc ataatggtcg gaaaaaataa aaaagaagcg
     3601 tattttaacg gaaatcccgc cgcaccaccc catatcttgc cggcaaaacc ttaccgcatc
     3661 ccgcaccctc gatgccgtct gaagccttca gacggcattt ttaacgcgcc cgaaccccga
     3721 ttccgccaac gcccgatgct tggcgcggca tttgccgtat tgccccgccg ccgggcgcgt
     3781 tataatccgc cacgacatcc gcccgatttg gaaacctgcc tatgaaaccc gcctatttca
     3841 tctccgacct gcatttgagc gaaaagcacc ccgaactgac cgcgctgttg ctgcgttttt
     3901 tacgttcttc cgccgccggg caggcgcggg cggtttacat tttgggcgat ttgtttgatt
     3961 tttgggtggg cgatgacgaa gtttccgagt tgaatacttc ggttgcgcgt gaaatcagga
     4021 aattgtccga caaaggcgtt gccgtgttct tcgtcagggg caaccgcgac ttcctgattg
     4081 gtcaggattt ttgccggcag gcaggcatga cgctgctgcc ggattactcg gttttggact
     4141 tgttcggctg caaaaccctc atctgccacg gcgacactct gtgtacggat gacagggcat
     4201 accaacgttt ccgcaaaatc gtgcatcgga agcggctgca aaaactgttc ctgatgctgc
     4261 ccctgaagtg gcgcacgcgc cttgccgcca aaatcaggcg cgtcagcaaa atggaaaaac
     4321 aggtcaagcc cgccgatatt atggatgtca atgccgcctt taccgcgcgg caggttcgcg
     4381 cctttaacgc ggaaaggctg atacacggac acacccaccg cgagcatatc catcacgaaa
     4441 acggctttac ccgcatcgtt ttgggcgact ggcataacga ctatgcttca atcctccgcg
     4501 tggacgggga cggcgcggta ttcgtgccgc tggaaaaatg ctgaaaatgc cgtctgaagc
     4561 ctttcgggcg gcttttttta cacgcccctt tcccacactc cctccgccgc atcatcacca
     4621 tccttaaccc gcattaatgg gcgttatcga taaaatgctt gaccgattac ataagattac
     4681 gtaaagtgtg caaacgcata acaattggtc ttaccaattt atcttttaac caaaatatcg
     4741 ggtgtacggg atttgaacgt ctttccaaac ctcgacgcgc cttatgatgc aaatgcctaa
     4801 aaaggattcg ttatggcact tttcctcagc atattcccca tcgtcctgct gatttggctg
     4861 atggtgaaaa aaaacagtat gccctcctac gtcgcgctgc cgattaccgc agtgctgatt
     4921 tacgccatca aacttttcta cttcggcgat gcgggcatgc tgctcaacgc caccgccgct
     4981 tccggcctcg tcaaaacgct cacgccgatt accgtgattt tcggcgcgat tatgttcaac
     5041 cgtatgatgg aaaccacggg ctgcattgat gtcatccgca aatggctggc gaccatcagc
     5101 cccaaccccg tagcgcaact gatgattatc ggctgggctt ttgcctttat gattgaaggc
     5161 gcatccggct tcggcacgcc tgccgcgatt gccgcgccga ttctgatgag cttgggcttc
     5221 aacccgttga aagtggcgat tttcactttg gtgatgaact ccgtccccgt ctctttcggc
     5281 gcggtcggta cgccgacctg gttcggtttc gcaccgctga acctgagtgc cgaagacatc
     5341 ctcgccatcg gcaggcagac cggcgtaatg cacttcttcg caggtttcgt catccccgtc
     5401 atcggcttgg gcttcatcgt accttggtct gaaatccgca aaaacttggg cttcgtcgcc
     5461 attgccgtct tctcctgcac cattccttat gtcgcattgg cgatggtcaa cgaagaattc
     5521 ccgtcgctcg tcgccggcgc aatcggcctg atggtgtccg tattcgccgc caaccaaggc
     5581 tggggcttga gcaaagacca cgccaaagac ccgaatgccg aaaaagtgcc gttcgcccaa
     5641 gtcgccaaag cactcgcccc tttgggtatg ctgatcggca tgctggtggt tacgcgcatc
     5701 aaacagctcg gcatcaaagg cattttgacc agcaaagaag aatggttcag cttccaactg
     5761 ccgtttgatt tgtccaaaat caccgtcagc gactccctga cgattacctt cggcaatatt
     5821 ttcggacaag atgtcagcgc gtcttaccaa acgctgtacg tcccggcttg gattccgttt
     5881 gtgctgaccg tttggatttg catcctgctg tataaaacca aattcaaaga tgcctggacg
     5941 atttattccg taactttcaa tcaaaccaaa aaaccgctgc ttgccctgat gggcgcgctg
     6001 attatggttc agctgatgct ggtcggcggc gacaattcga tggtgaaaat catcggtaag
     6061 gaatttgccg caatggcggg cgaacactgg gtttatttct cgccgtatct gggcgcgatc
     6121 ggtgcgttct tctccggctc caacaccgtg tccaacctga ctttcggccc gattcagcag
     6181 caaatcgcct tggataccgg cctgtccgtt accctgattc tggcgttgca gtccgtcggc
     6241 ggcgcgatgg gcaatatggt gtgcctcaac aacatcatcg ccgtatgtac cgtattggat
     6301 gtgaaaaatt ccgaaggtgc gattatcaag aaaaccgtta tcccgatggc gatttacggc
     6361 gtgattgccg tcgtcgcggc aatgattttc ttcctctagg cgaaacgcca ccatccatag
     6421 cggcagcacg cggggaacgg aaaccgccgt tccccgtctg ggcggcgcgt cgggcagaat
     6481 cccggtgccg gaacagcccg ccccgccaaa caaatgccgt ctgaaaccgg aaaaggcttc
     6541 agacggcatt tttccgccgt ttgcattcag gcgtaatgat gatgcggcat cttgccgtca
     6601 aggcggtagc gcgtgccgca atacgggcag gcaacgctgc ccgattctcc ttcgcacaaa
     6661 ggcaaaaaca ctctcggatg cccgttccac tgctcgttgt cgggtcccga gcaatacagc
     6721 ggcagatttt ccggcaacac ggaaatttcc tgcagattca gattgtccat ttgattttcc
     6781 tttgcgtggt tggcgtgcgc ccattttacg ccatcggcag gctaaaggat attttcggcg
     6841 caaagccgca atccgctata atccccactt ttcagacggc ataccatgac tgcgcttacc
     6901 cttccggaag acatccgcca acaagagcca tccgccctgc tctatcccct cgtttccgcc
     6961 tacctcgaac acaccgccca aaccggcgac gaatccctct cctgcctgtc cgacgaccag
     7021 cacacgctga ccgcattctg ctacctcgac agccaagtcg aagaaggcgg cttcgtgcaa
     7081 ctcatcgcct ccggttacgg cgaatatatt ttccgcaacc cgcttgccga cagcctgcgc
     7141 cgctggaaaa tcaaagccgt gccgaaagtc ttggacaaag ccaaagccct ctacgaacaa
     7201 cacggcaaaa ccatcgaaac gctcgccgac ggaggcgcag acatcgaatc cctgcgcaaa
     7261 cagttccccg actttgaaga atgggacggc gcatactacg aagccgccga acaagacctg
     7321 cccctgcttg cagaacacat acagtcaaac tgggaaacct tcgcccatat cgggcaggcg
     7381 tgattgcgtc tgtttccagc ccgtgtaaaa cagcgtaaaa tcggcaaacc cgaatgacct
     7441 tccgtcccca tcaaggagca agctatgttc ttcaagcaca tcgaagccgc ccccgccgat
     7501 ccgattctcg gtttgggcga agcattcaaa gccgaaaccc gccccgaaaa agtcaacctc
     7561 ggcatcggcg tttataaaga cgcatccggc gcgacacccc tcgtcaaagc cgtcaaagaa
     7621 gccgaaaaac gcctgttgga aagcgaaacc accaaaaact acctcaccat cgacggcgtt
     7681 gccgactaca acgcgcaaac ccaaatcctg ctgttcggca aagaccacga aatcatcgcc
     7741 agccgtcgcg ccaaaacagc gcaaagcctc ggcggtacgg gcgcattgcg tattgcggcc
     7801 gagtttgcca aacgccagtt gaacgcgcaa accatctgga tttccaatcc gacttggccc
     7861 aaccacaacg ccatcgccaa agcggtcggt atccaagaca aaccttatcg ttactatgat
     7921 gccgccaaac acggtttgga ttgggacggc atgattgagg acttgagcca agcgcaaaaa
     7981 ggcgacatcg tcctgctgca cggctgctgc cacaatccta ccggcatcga ccctacgccc
     8041 gaacaatggg aaactttggc aaaactttct gccgaaaaag gctggttgcc gctgtttgac
     8101 tttgcctacc aaggcttcgg caacggtctg gaagaagatg cctacggctt gcgcgtgttc
     8161 ttgaaacaca atacagaatt gctgattgcc agctcttatt ccaaaaactt cggtatgtac
     8221 aacgagcgcg tgggcgcgtt cactttggtg gccgaagatg aagcaaccgc cgcccgcgcc
     8281 cacagccaag tcaaaaccat catccgtacc ttgtattcca atccggcttc acacggcgcg
     8341 aacactattg cgctggtgtt gaaaaatgat gatttgaaag cacaatggat tgccgaactc
     8401 gatgaaatgc gcggccgcat caaagccatg cgccaaaaat ttgtcgagtt gctcaaagcc
     8461 aaaggtgcaa gccaagactt tgatttcatt atcgaacaaa acggtatgtt ctctttcagc
     8521 ggtctgactc ccgaacaagt tgaccgtttg aaaaacgagt ttgccattta tgccgtccgc
     8581 tccggccgca tcaacgttgc cggcattacc gacgacaaca tcgattatct gtgcgaaagc
     8641 atcgtgaaag tactgtaaaa agcacagcca tatgaaaatg ccgtctgaac cttaaccagt
     8701 tcagacggca tctgtttttt gttaaaaaac aataaactat aacaatttca aacaagctaa
     8761 aaacatctat aaaatcaacc caatatgatg aactcaaata aaaatacgaa tatcatcatt
     8821 ctcaaattca aaatttgaac gccacagtat tatccgaagc cacaaaaacc tttccgccgt
     8881 cattcccgcg caggcgggaa tccgggaaac caatgctgca agaattgatt agaaacaact
     8941 gaaaccgagc aaactggatt cccacctgcg cgggaatgac gaaataaggc gagtaaaact
     9001 gatgaaacaa attgattaaa aacaataact tatattattt tatttaaatt ttcgataaaa
     9061 tcaattttcc gtattcaata ctgctccaat caattcccgc gcaccgtcgt ccgccaattt
     9121 cttagcgaca gcgcgtccga gcgcgtcggc atattcggca ggggcttgcg cgtccgcctg
     9181 caacacaacc gaaccgtcgg ggtgtccgac cagtccgcgc aaggtcagca agccgttttc
     9241 ttccgtgcaa tatgcggcca gcggcacttg gcagcttccg cccaaagcgc gcgccaaagc
     9301 tcgttcggcc gtaacgcagg cgtgtgtggt atcgtggttt agcggtttta aaacctcata
     9361 caaatcttcg cggtgcgcgg caatttcgat acccaatgcg ccttgtccgg cggcaggcag
     9421 gctgtcggat tccgacaaaa tcatgcggat gcgtccgtcc aatttcagac gctgcaaacc
     9481 ggcggcggcc aaaataattg cgtcgtattc gccgttatcg agtttggaca aacgggtttg
     9541 cacattgccg cgcaaaggtt tgataagcaa atgcggatag cgcgcgcgca actgggcttc
     9601 gcggcgcagg ctggatgtac cgacgacagc gcctttgggc atttcttcca aacgcgcgta
     9661 ttggttggac acaaacgcgt caaacggatt ggcgcgttcg ccgatggcgg caagcgcgaa
     9721 accttcaggc aaatccatcg gcacgtcctt aatcgaatgc accgccaaat cggcgcgccc
     9781 gtcatataaa gcctgttcca actctttgac aaacaagcct ttaccgccga cttttgacaa
     9841 agttttgtcc aaaatctgat cgccgcgcgt ggtcatgccc aaaatctcga cttcgcaatc
     9901 gggatacaga gccttcagac ggccttggat atgctttgcc tgccacatag caagcaggct
     9961 ttcgcggctg gcgatgacga gttttttcgg gttcatgttc aatgcgttca aagaatggaa
    10021 acggcgtgaa gtctatcata ttttgaacgt ttcttcagac ggcaccgtca ggtctatgtt
    10081 atatttacac ccacaaaaca cgaaacccgc cacaatgaaa cgcaccaaaa aatacccttt
    10141 cttaacgttg cagcggcaac gtttccattt gaactttgaa aacgcctctt ccgccgccgg
    10201 catcccagcc gaacgcgatt tctaccgctg ggcgtggtct gccttgaaaa atgaataccg
    10261 ccgcgccgac atcagcctga ttcttctgga cgaagaagaa gcccgagcct acaaccgcga
    10321 ctaccgcggc aaagattacg ccaccaatgt attgagtttc gcgctcaacg aaggcgaaat
    10381 cctgccctgc caagtttcgg aaaaactgta cggcgatttg attatctgcc cgcaagtggt
    10441 tttgaaagaa gccgccgaac agggcaaaac gcccgaacgg cattttgccc acctgaccat
    10501 acacggcgtt ttgcacctga tgggctacga ccacatcgaa gacgatgaag ccgaaataat
    10561 ggaagccgaa gaaatccgcc tgatgctggc ggcaggcttc cccaacccct accaagagga
    10621 cgaatattaa aatggacggt acgcagtcga aacccaagtt tttcgaacgc ctgatctccc
    10681 gacttgccgg cgagcccgac tccgccgaag acgtattgac cctgctgcgc caagcgcacg
    10741 agcaggaagt ttttgatgcg gatacgcttt taaggttgga aaaagtcctc gatttttccg
    10801 atttggaagt gcgcgacgcg atgattacgc gcagccgtat gaacgtttta aaagaaaacg
    10861 acagcatcga acgcatcacc gcctacgtta tcgataccgc ccattcgcgc ttccccgtca
    10921 tcggtgaaga caaagacgaa gttttgggta ttttgcacgc caaagacctg ctcaaatata
    10981 tgttcaaccc cgagcagttc cacctcaaat cgatattgcg ccctgccgtc ttcgtccccg
    11041 aaggcaaatc gctgaccgcc cttttaaaag agttccgcga acagcgcaac catatggcga
    11101 tcgtcatcga cgaatacggc ggcacgtcgg gtttggtcac ctttgaagac atcatcgagc
    11161 aaatcgtcgg cgaaatcgaa gacgagtttg acgaagacga tagcgccgac aatatccacg
    11221 ccgtttcttc cgaacgctgg cgcatccatg cagctaccga aatcgaagac atcaacacct
    11281 tcttcggcac ggaatacagc agcgaagaag ccgacaccat tggcggcctg gtcattcaag
    11341 agttgggaca tctgcccgtg cgcggcgaaa aagtccttat cggcggtttg cagttcaccg
    11401 tcgcacgcgc cgacaaccgc cgcctgcata cgctgatggc gacccgcgtg aagtaagcac
    11461 cgccgtttct gcacagttta ggatgacggt acgggcgttt tctgtttcaa tccgccccat
    11521 ccgccaaaca taaaaatgcc gtctgaaacc gttgcaagtt tcagacggca tttcgcttat
    11581 ccgcttattt tttgctcaaa gtcagccccg tccaaccgaa taacagggtc aaagccaaac
    11641 tcaaatagca gaaaaaggca tacggcagat attcccaaac cggcacgccc agcgcgtggc
    11701 tgatgaacac gccgcatacg ctccacggta cgagcgggtt aatcaccgtc cccgcatctt
    11761 ccagcgtccg cgacagattg cgggaatgta gtccgagcct gtcgtaaacg ggtttaaacg
    11821 tttctccaga aagcaggatg ctcaaatatt gttcgccaat caggaaatta accccgaccg
    11881 aagtcatggc aacgctgaac gtcgcgcgtc cggcattcgt caagaaggta cggatggcct
    11941 ccaacaggga aggaatcaca ccgagcgcaa acaacagtcc gcccaaactc atcccgagaa
    12001 tcacgatggt ttgcgtgaaa aacatacttt ccaaaccgcc gcgcgaaatc agtttgacaa
    12061 catctttaaa cgcttcgcct tcgagtttgt agccgccgta aaaccacgca ccgagctgac
    12121 gcagatcggg cgtgctgtgc agatacgtta cagcaacggc aaccatgacg gtaaagagca
    12181 tggcgacgac ggcgttgatg cgcatcaatg ccaaaatgac caacagcgca aacggaatca
    12241 gcgaatagcc gtgcaccaat cccgtggctt caagctggct gcggaaggat tcgacgctgt
    12301 tcaaatcctg cgcggcgaca ttcggcaaaa gccaaagcat cagtgccgca ctaatgagcc
    12361 acgcggggat ggtggtgtac atcatatttt tgatgtgctc aaacaagtcg atgccgacga
    12421 tggacgcgga aatacccgtc gtatccgaaa gcggggacat tttgtcgcca aaaaatgcgc
    12481 ccgaaacaat cgcgcccgcc gtcatcgcca tatcggcctg aaacgccgcc gccatcccca
    12541 taaaggcaac gccgacagtg gcgcaggtgg tcaggctgct gccgatggac acgccgatga
    12601 cggaacacag cgcgaaggcg gaaaaataaa aataagtcgg agaaatcagc ccgaaaccgt
    12661 aatacatcag cgtcggaatc gcaccgctca tcatcagtgc gctgaccatc agcccgatga
    12721 agaaaaacag gtaaatcgcg cccataccct gattcaacgc gcctatcatg ccctgctgca
    12781 tatcgttgta tttcaaaccg cgcgccaagc cgtacaaaat cagcacgacg atggcggcaa
    12841 taatggacat atgcggcagc cactccaatg aaatgatggt atagcccatc gcggcaatca
    12901 gagcgacgac gacggcaagt gcctcaccgc gcggcatatc gagtaaggat ttgaaagcaa
    12961 acatgattct ttgcccgatt tgatataaag ttaacggatt ctaacacact ataccgaatc
    13021 cgcccgacgt tttcagacgg cattttagcg ttttacaaaa gccggacaga aacaaaacgg
    13081 caattttctc aatttaaatt aatttttttg aaatataatt ttttattttt ttgtttgttg
    13141 gcatataaga cttttatgga ttgaaatatt aaaacctcgg cacacacgcc gcaaacaccg
    13201 gtacgcaaaa atgccgtctg aaagatgttc agacgacatt tctcaagaaa aagattattt
    13261 gtccgcccta tatccgtaca ccgcaaaaaa cacgatatac agataacaga tgacggaaac
    13321 gacaaacgaa gacatcaggg tgtaagtatc tgccacccag ccctgcacga caggaacgac
    13381 cgcaccgccg acaatcgcgg tacacagtac accggaagcc gcgttggtaa attttcccaa
    13441 tcctttggtt gccaaagaga aaatcgtcgg gaacataatc gagttgaaaa aaccgatggc
    13501 aagcagcgac cacatcgcca catccgcatt gccgctaccc gtcgccatcg cgatggcaag
    13561 cagtacgacc gcagccgatg cgttaaacgc caaataacgg ttgggcgcga atttcgccat
    13621 caccgccgaa ccgaggaaac gtccgaccat cgcgccgccc caatagaacg acaggtaatg
    13681 cgcggcagaa gcatgatcca gccctttcag ataacccaat acgttgacca tcaacgaacc
    13741 gatagacacc tccgcgccga catagcagaa aatgcctgcc gtaccgaaca cgagatgttt
    13801 gtattgccat acgccggttt tgccgtcgtg gttgtgcgcg ctttcctcgg cggcaatttt
    13861 gcgcgcgtcg ggcagccgga tcattttcac gaaaacggca aggataatca gcagccccgc
    13921 cagtcccaaa tagggaatct gtacggaaga aatctgttcc gccttgctga cggtttgggt
    13981 tgcgtccgcc aaaatcagga acgcgccgat ttgcggcgca atggtcgtac ccaaagcgtt
    14041 aaacgcctga accagcgtca gtgttgccga ttccttgccg ggtttcgcca gcagggtaac
    14101 ataaggatta ccggcaacct gaagcagcgt tacgccggaa gccaaaataa acaacgcgcc
    14161 caaaaatacc gcgtaagaat ggctgcccgc agcaggataa aacagcaggc atccgaccgc
    14221 cgtcagcaga aagccgccga taacgccgtt tttgtagccg actttgccga caaaagcccc
    14281 catcgggatg gacatcaccg cataggcggt aaagaaacag aattggatca gcatcgcctg
    14341 aacgtaagac aggtcgaaaa tttctttcaa atgagggata aggatgtcgt tcatgcaggt
    14401 aataaaaccc atcatgaaga acagcgtggt caagacgacc aatggggacg tatgattgtt
    14461 ttgtgattgc gcagacatga tttgcctttc gtggtgtcgg aatattaccc gtttcaagaa
    14521 aatagaaatt gacatttctt aacggcaatg caaatcatac tgatatttga acattttgca
    14581 aactttatcg gatgcaggca atgcgccgat ctgaaattca agcagcagaa attaatattt
    14641 tacagttgct tgcatagatt ttaatagatt ttaaaaaatt ccggcggact tgcaaaaacc
    14701 gttcccaata aaatgaaaat ccgccgccgt atccggaaaa ttcggaaatg ccgcatcgtg
    14761 gcatcaaaac cggagcggaa agaatgtcgt atgcccgaca aaaaaggggc atacggctgt
    14821 gccgtatttt ttgcaccgtc ctccgccctt cggcgggggc gtgaaaatat agtggattaa
    14881 caaaaatcag gacaaggcga cg
//
LOCUS       DAXIFD010000034        14673 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.034, whole genome shotgun sequence.
ACCESSION   DAXIFD010000034 DAXIFD010000000
VERSION     DAXIFD010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14673
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.034"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..339
                     /locus_tag="ACFOCN_000745"
     CDS             <1..339
                     /locus_tag="ACFOCN_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFC6969931.1"
                     /translation="DASGLGEKIKDGKNQKTVLSREEEQKICNTFTHKQAVEDFSVVI
                     GYDEIKAKNHSLSAGQYFEVKIDYVDISADEFAQKMAGFSADLDKLFAESAELEKEIK
                     DRLAMLKFNS"
     gene            350..487
                     /locus_tag="ACFOCN_000746"
     CDS             350..487
                     /locus_tag="ACFOCN_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6969932.1"
                     /translation="MKPVKLKMPSESLSDGILFGLENTYAVLSLKERIQKTKATGIYR
                     K"
     gene            complement(647..1984)
                     /gene="ribBA"
                     /locus_tag="ACFOCN_000747"
     CDS             complement(647..1984)
                     /gene="ribBA"
                     /locus_tag="ACFOCN_000747"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HFC6969933.1"
                     /translation="MTDTAGLRRRNLRQWIAEHYGGLQTRFAEAVALNTGELSALLKN
                     KSFGEKKARKIEQAAKMPAFWLDTEHTARPPEHTGKHTMSHISPIPEILADIKAGKMV
                     IITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMTQKN
                     GAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPADIVQPGHIFPLRAQKG
                     GVLVRAGHTEAGVDLAQMNGLIPAAVICEIINDDGTMARMPELMKFAEEHNLKIGTIA
                     DLIEYRSRTESLLEDMGNAPVQTPWGEFQQHVYVDKLSGETHLALVKGTPAADTETLV
                     RVHEPFSVMDFIQANPRHSWSLPKALERVQQAESGVVILLHRTEDGASLLDRTLPKGA
                     NQAYKWDSKSYGIGAQILVGLNVKKLRVLGQPSSFTGLTGFGLEVVGFEEAEK"
     gene            2093..2227
                     /locus_tag="ACFOCN_000748"
     CDS             2093..2227
                     /locus_tag="ACFOCN_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969934.1"
                     /translation="MPSEAGFVASDGIAAILAGRGLFVPTSRALLIWGLPEAYSEKNF
                     "
     gene            complement(2206..3219)
                     /locus_tag="ACFOCN_000749"
     CDS             complement(2206..3219)
                     /locus_tag="ACFOCN_000749"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6969935.1"
                     /translation="MIFSIIVPIYNVEKYLRCCVDSVLAENFADYEMILVDDGSPDGC
                     GKICDEYAGKYPHIKVIHQENGGLSDARNAGIRAAKGDYLIFLDSDDYWADTNRSKNA
                     RGGILFDLQQLADKKVDLILHPSSFNYRDIPKGADFSDNDFVRHFETLVEGRYYIANA
                     WTKIVRREIIIKNNLFFPKGYIHEDFPYSLQLARFIKTFAFYDNPFYQYRVLGGSISH
                     NIKYKNFSDVLTHLDRGVDFLVENKNSPIYGGLQKFVFDNIGYLRSILVRLYFSKNII
                     LIYRKYFSFKEKCRKIFGAKAIRPVFIGKTAFIIGLPILRLLVPPMLYPAIKAVYQKF
                     FSE"
     gene            complement(3387..3980)
                     /gene="ribA"
                     /locus_tag="ACFOCN_000750"
     CDS             complement(3387..3980)
                     /gene="ribA"
                     /locus_tag="ACFOCN_000750"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HFC6969936.1"
                     /translation="MSEMLNHVASCRLPTEWGVFTMHGFEEANGQEHVALTVGNFSDG
                     NPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLRQEGRGIGLINK
                     IRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLK
                     DAGINVVERIPLHVGENLENKRYLQTKADKLGHLMSE"
     gene            complement(3973..4650)
                     /locus_tag="ACFOCN_000751"
     CDS             complement(3973..4650)
                     /locus_tag="ACFOCN_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969937.1"
                     /translation="MPAALIKDFLLTQGLKLPLDEVRAAYLTAQTVMDMGTASIDRSV
                     LWRSDEGWKLADYLSCDNVREDALKRLFMALDSVFSRSTGVQSAAVYALMPSENQAFQ
                     LICLSRQGEVLENLWDLDEAAGKVSLACRSAQSGWMNVASDVRRWLDLGELSGERNHA
                     SAAQISIPVCTESGGVLGVVHVEFECAECADEAAQAEWVALALALSEPLKLLLGMSAG
                     KDGSEDV"
     gene            4804..4888
                     /locus_tag="ACFOCN_000752"
     tRNA            4804..4888
                     /locus_tag="ACFOCN_000752"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4838..4840,aa:Leu,seq:tag)
     gene            complement(4979..5167)
                     /locus_tag="ACFOCN_000753"
     CDS             complement(4979..5167)
                     /locus_tag="ACFOCN_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969938.1"
                     /translation="MADERKGVFDAIIKINIFFFPVETPALGAVNLIAGGSTRFRFGA
                     EQMAALYVPFCVLKHIGR"
     gene            5409..6443
                     /gene="purM"
                     /locus_tag="ACFOCN_000754"
     CDS             5409..6443
                     /gene="purM"
                     /locus_tag="ACFOCN_000754"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HFC6969939.1"
                     /translation="MSTSLSYRDAGVDIDAGDQLVENIKPFAKRTMRPEVLGDLGGFG
                     ALVEIGKKYKNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLF
                     FLDYFACGELDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVG
                     VVEKENVITGRSIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLRE
                     AVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPENTVAQIDAKSWELPK
                     LFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVQDLLGEQGETVYRLGLIRER
                     QGDEHQTQVA"
     gene            complement(6917..7573)
                     /locus_tag="ACFOCN_000755"
     CDS             complement(6917..7573)
                     /locus_tag="ACFOCN_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6969940.1"
                     /translation="MTIKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMI
                     SRLQPDVVLLDLDMPGMNGREALSQIISINPQQAVIMLTVSEDSDDLTECIRIGARGY
                     LLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRELEI
                     LGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNVPQPVLE
                     "
     gene            complement(7570..9342)
                     /locus_tag="ACFOCN_000756"
     CDS             complement(7570..9342)
                     /locus_tag="ACFOCN_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite sensor histidine kinase"
                     /protein_id="HFC6969941.1"
                     /translation="MILPARFSDGISLSLRLKLLTGVWVGLAALSVVLTLLLSLRLEN
                     AASVIEEAGNLRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSD
                     TPLAYDLIQSMLIIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTW
                     WLRRFQWAIMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGRRCFDIPVPEGGTPE
                     FKQVGRCFNQMGGRLKILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQ
                     AAEHFLNRILPAVGADSGRVCLDGESDVYVSIHHADCGTAASDLGKYHEEIFPIEYQN
                     ETLGRLLLSFSDGISLTGDDRTLLQTLIRQLGVSLASAKQEEEKRLLAVLQERNLIAQ
                     GLHDSIAQALTFLNLQVQMLETAFAENKREEAAENISFIKTGVQECYEDVRELLLNFR
                     TKISNKEFPEAVADLFARFTQQTGITVETAWENGSFLPPQEAQLQMIFILQESLSNIR
                     KHARATHVKFTLSEHGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIHAV
                     LEIRSQAQQGTTVSLTVASEESLK"
     gene            9548..10162
                     /locus_tag="ACFOCN_000757"
     CDS             9548..10162
                     /locus_tag="ACFOCN_000757"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HFC6969942.1"
                     /translation="MKTSNFSKRTSAMKTFALILADGQASRMGGEDKGLALLGGKALI
                     DHVIDRVRPQVSHIAISTNRNLEEYARRSPHIFPDARQWQHFGPLSALCTAANDLQLA
                     TADWLLVVPCDMPYLPGDLVARFETVSKRTPLCNAYYVETPITMHYNIMYIRPQILQS
                     AIPYLFSGMKTLRSWLQQQRARPVRFEFDGHFADLNTQIDLQEG"
     gene            10325..10942
                     /locus_tag="ACFOCN_000758"
     CDS             10325..10942
                     /locus_tag="ACFOCN_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HFC6969943.1"
                     /translation="MFTGIVQGLGKLTAIHRPSEAFHTYVVELPQEAADNLQRGASVA
                     NNGCCLTITEIEGNRVSFDLMAETLAKTNLGLLKEGDCVNIERAARFGDEIGGHVMSG
                     HIMATVPIVEIERDGFNRTVWFSLPHELKPYILTKGFVGLDGCSLTIGKVEDGRFNVH
                     LIPETLERTLFGSRKVGDRINIEIDPNTQAIVDTVERLMAQRYAK"
     gene            10950..11813
                     /locus_tag="ACFOCN_000759"
                     /pseudo
     CDS             10950..11813
                     /locus_tag="ACFOCN_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714098.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            complement(11826..12260)
                     /locus_tag="ACFOCN_000760"
     CDS             complement(11826..12260)
                     /locus_tag="ACFOCN_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HFC6969944.1"
                     /translation="MPLPAPCRFAKPAASFLSMALLSCQLSHAATAYIPPNDFQPNCD
                     IRRLGLTQSQHNELRKIRTAFKMAGDRARLKVMHSEHSRRRSVVEIISSDVFNRNEAR
                     DYVESRYLSGMDFAVDELEIQHRFFHILTPQQQQMWLSSCLK"
     gene            12406..13134
                     /gene="rpe"
                     /locus_tag="ACFOCN_000761"
     CDS             12406..13134
                     /gene="rpe"
                     /locus_tag="ACFOCN_000761"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HFC6969945.1"
                     /translation="MTAYRIAPSILSADFARLGEEVESVIAAGADLIHFDVMDNHYVP
                     NLTFGPMVCAALKPYASVPIDVHLMVEPVDDLIQSFAKAGASIITFHPEASRHIDRSL
                     SLIRDMGCQAGLVLNPATPVYLLENVLDRLDMVLLMSVNPGFGGQSFIPHTLEKIRRV
                     RAMLDRYEAQSGRHIAIEVDGGIKTDNIAAVARAGADTFVAGSAIFGKPDYKAVIDAM
                     RAELEKSGRLNLAPMIEIEMPSEN"
     gene            complement(13157..14188)
                     /gene="ruvB"
                     /locus_tag="ACFOCN_000762"
     CDS             complement(13157..14188)
                     /gene="ruvB"
                     /locus_tag="ACFOCN_000762"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HFC6969946.1"
                     /translation="MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQD
                     KAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKELGVNLRQTSGPVLER
                     AGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
                     LPPFTLIGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIVSRSAQLLQLDMSEEGA
                     EEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDAQGLDVMDRK
                     FLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATERAY
                     LHFGLPVEK"
     gene            complement(14270..14578)
                     /locus_tag="ACFOCN_000763"
     CDS             complement(14270..14578)
                     /locus_tag="ACFOCN_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969947.1"
                     /translation="MTLKTDLLPKINNEDYQRLILKHSAEFSGGEIRLLNEILEKFNF
                     DVVQAQALAQAVMQQIRFDPNAYHIDSDDEDTTGICPHCINPPMPPLRDYLVWRETRG
                     "
BASE COUNT         3476 a         3501 c         4091 g         3605 t
ORIGIN      
        1 gacgcatcgg gcttgggcga aaaaatcaaa gacggcaaaa accaaaaaac cgtactttct
       61 cgcgaagaag aacaaaaaat ctgcaatact ttcacgcaca aacaagcagt ggaagatttc
      121 agcgtggtga tcggctacga tgaaatcaaa gcgaagaatc acagcttgtc ggcggggcag
      181 tatttcgagg taaagattga ttatgtggat atttccgccg acgaatttgc gcaaaaaatg
      241 gcgggatttt cagcggattt ggataaactt ttcgccgaat ctgccgaatt ggaaaaagag
      301 attaaggata gattggcgat gttgaaattc aattcataaa taccgatgaa tgaaaccggt
      361 caaacttaaa atgccgtctg aaagcctttc agacggcatt ttgtttggtt tggaaaatac
      421 ttatgccgtt ctttccctga aagagagaat ccaaaaaacc aaagccacag gaatttatcg
      481 gaaatgacaa aaacccgacg aaccggattc ccgcctgcgc gggaatgacg aattagaagt
      541 tacccgaaat ttgcaaaaac aaaatccaac ccaacagacc gggttttcgt ttgcacggaa
      601 ataatgcaat aaataaagca aatataaagt atttgaattt actatattat ttttccgctt
      661 cttcaaagcc gacgacttcc aaaccgaagc cggtcagacc ggtgaaagat gagggctgcc
      721 cgaggacgcg cagttttttg acgttgaggc cgacgaggat ttgtgcgccg atgccgtagc
      781 ttttgctgtc ccatttgtag gcttggtttg cgcctttggg tagggtgcgg tcgagcaggg
      841 atgcgccgtc ttcggtgcgg tgcagaagga tgacgacgcc gctttctgcc tgttggacgc
      901 gctcgagtgc tttgggcaat gaccatgaat ggcgcgggtt ggcttgaatg aagtccatca
      961 cactgaaggg ttcgtggacg cggacgaggg tttcggtgtc ggcggcgggc gtgcctttga
     1021 cgagggcgag gtgggtttcg ccggagagtt tgtcgacgta aacgtgttgt tggaactcgc
     1081 cccacggggt ttgtacaggc gcattgccca tgtcttcgag caggctttcg gtacggctgc
     1141 ggtattcgat gaggtcggca atggtgccga ttttaaggtt gtgttcttcg gcaaacttca
     1201 tcagctcggg catacgcgcc atggtgccgt cgtcgttgat gatttcacag atgacggcgg
     1261 caggaatcag cccgttcatt tgcgccaagt cgacgccggc ttcggtgtgt ccggcgcgga
     1321 cgagtacgcc gcctttttgg gcgcgaagcg ggaagatatg accgggttgg acgatgtctg
     1381 cgggtttggc ggtcggggaa acggcggttt gaatagtcag ggcgcggtcg gcggcggaaa
     1441 tgccggtggt aatgccgtgt gcggcttcga tggagacggt aaagttggtg ccgtattgcg
     1501 cgccgttttt ttgggtcatc atcggcagcc cgagtttttc gaccatttcg ccgtccatcg
     1561 gcaggcagac caagccgcgc gcgtgtttga tcatgaagtt gatggcttcg ggcgtgacga
     1621 attgcgccgc catcagcagg tcgccttcgt tttctcggtc ttcggcatcg gtgatgatga
     1681 ccattttgcc ggctttgatg tcggcaagga tttcggggat gggggaaata tgggacatgg
     1741 tgtgttttcc tgtgtgttcg ggcgggcggg cggtgtgttc ggtatcgagc cagaaggcgg
     1801 gcatttttgc cgcctgttcg attttacggg cttttttctc gccgaaggat ttgtttttca
     1861 aaagggcgga gagttcgcct gtgttgaggg caacggcttc ggcaaaacgg gtttgcaaac
     1921 cgccgtagtg ttctgctatc cattgccgca ggttgcggcg gcgcagaccg gctgtgtcgg
     1981 tcatcgtttc atcctttgta gaaatcggat gtagcggatt gtaatcgcgt atttaccaaa
     2041 aagcaaatct gtttttttcg ccaaaccgaa ttatttgctt tttggtaaac agatgccgtc
     2101 tgaagccgga ttcgtggctt cagacggcat tgccgcaatc cttgccggcc gggggctgtt
     2161 tgtcccaact tcccgcgcac ttctgatttg gggtttgccg gaagcttatt ccgaaaaaaa
     2221 tttctgataa acggccttga ttgccgggta cagcataggc ggtacgagca ggcgcaatat
     2281 cggcaatcct atgatgaatg cggtcttccc gataaaaacc ggacggattg ccttcgcgcc
     2341 gaatatcttt ctgcattttt ctttaaatga aaaatatttc cggtagatga ggataatgtt
     2401 tttggaaaaa taaagcctta ccaatataga cctcagatag ccgatattgt cgaagacaaa
     2461 tttttgcaaa ccgccgtaga tgggggaatt tttgttttcg actaaaaaat ccacaccccg
     2521 gtcgagatgc gtcagcacat cgctgaaatt tttgtatttg atgttgtggc tgatagagcc
     2581 gccgagaacg cggtactggt aaaaagggtt atcgtaaaag gcaaaagtct tgataaaacg
     2641 cgccaattgc aaactgtacg ggaaatcctc gtgaatgtat ccttttggga aaaacagatt
     2701 gtttttgatg attatttccc gcctgacgat ttttgtccac gcgttggcga tatagtaccg
     2761 cccctccacc agcgtttcaa aatggcggac aaaatcatta tccgaaaagt ccgccccttt
     2821 ggggatgtcg cggtaattga aggacgaggg atgcaggatc aaatcaacct ttttgtctgc
     2881 aagttgttgt aaatcaaaga gaatcccccc ccgcgcgttt tttgaacgat tggtgtcggc
     2941 ccaatagtcg tcgctgtcca aaaagattag gtaatcgcct tttgccgccc ggataccggc
     3001 gttgcgggca tccgacagcc cgccgttttc ttgatgaatc acttttatat gcggatattt
     3061 gcctgcatat tcgtcgcaaa tcttcccgca gccgtccggc gaaccgtcat cgaccaaaat
     3121 catttcataa tcggcaaaat tttcggcaag cacggaatcc acgcagcagc ggaggtattt
     3181 ttccacattg taaataggga cgatgatgga gaaaatcata aatatcaatc cattatatta
     3241 agatgtttgc gcgtatgcct caaacccgca cccgcaatgc gtttgcatcc gcaccctgta
     3301 actttataaa acttattgct ttatcaaggt atggaaacct gtttcccgaa aggcggcgca
     3361 ggatgcccgt tccctgcatc tttgccttat tccgacatca gatgccccag cttgtctgct
     3421 ttggtttgga ggtagcgttt gttttcaagg ttttccccga cgtgcagggg gatgcgttcg
     3481 accacgttaa tccccgcatc tttcagggtt tggatttttt cggggttgtt ggtcagcagt
     3541 ttgaccgagc ggatgcccag atattcgtag atagattgcg ccaaacggaa atcgcgggca
     3601 tcgacgggca gcccgagtgc caaattggct tcaaccgtat ccataccttg gtcttgcaga
     3661 tgataggcgc ggattttgtt aatcagcccg atgccgcgtc cttcctgacg cagatagacg
     3721 atgatgccgc gcccctctgt ctgtaccgcc ctcatggccg cttcaagttg aggtccgcag
     3781 tcgcattttc tcgagaacag cgcatcgccc gtcaggcatt cggagtggat gcgcgtcaga
     3841 accggattgc cgtctgaaaa attaccgacg gtcagcgcga cgtgttcctg cccgtttgcc
     3901 tcttcaaagc cgtgcatcgt aaatacgccc cattcggtcg gcaggcggca ggatgccaca
     3961 tggttcaaca tttcagacat cttcactccc atcttttccg gcagacatac ccaacagcag
     4021 tttcaaaggt tcggacaaag ccaaggcaag agccacccat tccgcctgcg ctgcctcatc
     4081 cgcacactct gcgcattcaa attccacatg aaccacgccc aacacaccgc cactttccgt
     4141 gcagaccgga atggaaattt gcgccgccga agcatgattg cgttctcccg aaagctcccc
     4201 caaatccaac caacggcgta catccgaggc aacattcatc caaccgcttt gcgccgaacg
     4261 gcaagccagc gaaaccttgc ctgccgcttc atccaaatcc cacaggtttt ccaaaacctc
     4321 gccctgtcgg gacaggcata tcagttggaa agcctggttt tcagatggca tcaaggcata
     4381 gaccgccgca ctctgcacgc ctgtcgagcg cgaaaacacc gaatccaaag ccatgaaaag
     4441 ccgtttcagt gcatcttcgc ggacattgtc gcacgacagg taatcggcaa gtttccaacc
     4501 ctcatcactg cgccacaaaa ccgaacggtc tatcgaagcc gtccccatat ccattaccgt
     4561 ctgcgccgtc agatacgccg cccgaacctc gtcaagcggc agcttcaaac cctgagtcag
     4621 cagaaaatcc ttaatcaaag cagcaggcat acccaaattc cgtcaataaa aacaaaaaac
     4681 cgcccgattc cgatgtcagg cggacgaaaa acagatttta ccgccccaaa ccccaagcca
     4741 tcaacagccc cgccgaaaac cttgcacaaa aaaacaaaat ctgtataatc gtccaattcc
     4801 catgcggacg tggcgaaatt ggtagacgca ccagatttag gttctggcgc cgagaggtgt
     4861 gagagttcga gtctctccgt ccgcaccaat aatgataaat aaattatata gttaatgctt
     4921 atcgggacaa attagtgcca caaaacataa gtcgtctgct tttcagcggg cggctttttt
     4981 atctgcctat atgtttcaac acgcagaacg gtacataaag tgccgccatt tgttccgcac
     5041 cgaatcggaa acgggtgctt ccgcccgcaa tcagattcac cgcccctaat gccggggttt
     5101 caaccggaaa gaagaaaata ttgattttga tgatggcatc aaaaaccccc ttccgctcgt
     5161 ctgccaaaag gaatggttaa gaaaagcaat gcgtctttat gatggaacgc gatatataag
     5221 gaattgaggg aaagggcagg cgggtttctg cccgttaatc ctgcggacgg tcccgccaaa
     5281 cccgacacgc gcgggcatat ggcggactgt ttacaatatt gtctaaaaat ctgaacctgc
     5341 aaacgtgaaa taaggtagaa tacgccccgt tattttaccg tccaatcccc atttaccaag
     5401 gaaaaacgat gagtacttca ttgagttacc gcgatgcagg tgtcgatatc gacgcaggcg
     5461 accaactggt cgaaaacatc aaaccgtttg ccaaacgcac catgcgtccg gaagtattgg
     5521 gggatttggg cggttttggc gcattggtcg aaatcggcaa gaaatataaa aatcccgtat
     5581 tggtcagcgg tacggacggc gtgggtacca agctcaaact tgcctttgat tgggataaac
     5641 acgatacggt gggcatcgac cttgttgcaa tgagtgtcaa cgatattttg gttcaaggag
     5701 cagaacctct gtttttcttg gattatttcg cctgcggcga attggatgtt ccgcgcgcaa
     5761 ccgatgtcat caaaggcatt gcacaaggtt gcgaagaatc cggctgcgcc ctgattggcg
     5821 gggaaactgc cgaaatgccg ggtatgtatc ccgtcggaga atacgatttg gcgggttttg
     5881 ccgtcggcgt agtggaaaaa gagaatgtca ttaccggccg cagcatcggc gcgggcgatg
     5941 tggtattggg tttggcttcc aacggcgcac attcaaacgg ctattccctt atccgtaaaa
     6001 tcatcgaacg cgacaatccc gatttggatg ccgagtttga taatggcaaa accttgcgtg
     6061 aggctgttat tgcgccgacc cgtctgtatg tgaaaccgat tcttgccgct ttggaaaaat
     6121 ttaccattaa aggtatggca cacattaccg gcggcggcat taccgaaaac gtgccgcgcg
     6181 tgttgcctga aaacacggtt gcacaaatcg atgctaaatc gtgggaattg cccaagctct
     6241 tccaatggct tcaaaaggcg ggcaatgtgg aaacccaaga aatgtaccga acctttaact
     6301 gcggcatcgg catggtcgtt attgttgctg ccgaagatgc cgatgcggtt caggatctct
     6361 tgggtgaaca aggtgaaaca gtttaccgtt taggtttgat ccgtgagcgt cagggagacg
     6421 agcatcaaac ccaggttgcc tgattgcttc tatagcgaaa tgccgtctca aacatgggtt
     6481 tggacggcat ttttatagtg gattaacaaa aatcaggaca aggcgacgaa gccgcagaca
     6541 gtacagatag tacggcaagg cgaggcaacg ccgtactggt ttttgttaat ccactatata
     6601 ttgattgata tgagggtggg ttacacatgc ttaaacgata taagccattg tatatttatg
     6661 ggattcggaa tggaacattt taccccgcat tagtatttcc gctttttatt atgccgtctg
     6721 aaaatatcat gatgatacgt tttcagacgg catagctgat attgcagtat cagatagggg
     6781 caaacggaaa acactaaacc gaacaatatt actgctatgc caagcgtact tatgggggca
     6841 taaacttaca tgcttggtct gttatccgaa tgaccgtacg gggattaaaa cccctaatat
     6901 gccgtctgaa cccgccttat tccagcacgg gttgggggac gttgtgccgg atggcgtaaa
     6961 cagcggcctg cacccggctg ctgaggttga gtttgcggag caggttttga acgtggactt
     7021 tgacggtgga ttcggcaaga tcgaggtggc gggcgatgat tttgttgctg tgtcctgcgg
     7081 cgagatagcc caagatttcc agttcgcgag gggtaagtga ggagagtgcc tgtgtccctt
     7141 gggcaggttg gggggaaatc aggcttttaa cgagtttggc ggtcatctcg ggcgagaata
     7201 cattatcgcc ttcggcggct ttgcgtatgc tttcgagcag aaagtcagcg ttgatgtttt
     7261 tcagcaggta accgcgcgcg ccgatgcgaa tacattcggt caagtcgtcg ctgtcttcgg
     7321 aaacggtcag cataatcact gcctgctgcg gattgatgct gatgatttgg gagagtgctt
     7381 cgcgtccgtt catgccgggc atatccaaat cgagcaggac gacatcgggt tgcagccgac
     7441 taatcatttt gatgcccgag aggccgtctg cggcttcgcc gatgacttca aaaccgtgtt
     7501 ggcgcgacaa aagggcttta atgccgctgc ggaagagggt atggtcgtct atcagaataa
     7561 ttttaatagt catttcaagc tttcttcaga tgcaaccgtc aatgagacgg tggttccctg
     7621 ttgagcttgg gaacggattt ctaaaacggc atggatgcgt ttggcacgct cctgcatgat
     7681 gtgcagtccg acatggctgc ccgtgggttc tcctattttc tccgtgtcga aaccttgtcc
     7741 gttgtcttgg atggtcatgg taaagcgtcc gccgtgttcg gaaagggtga attttacatg
     7801 ggtggcgcgg gcgtgtttgc ggatgttgga caggctttcc tgcaggataa aaatcatttg
     7861 gagctgcgct tcctgaggcg gcaggaacga accgttttcc caggcggttt cgaccgttat
     7921 cccggtttgt tgcgtaaagc gggcgaatag gtcggcaacg gcttcgggaa attctttatt
     7981 gctgattttg gtacggaagt tgagcagcag ttcgcggaca tcttcataac attcctgcac
     8041 gcctgttttg atgaagctga tgttttctgc ggcttcctcc cgtttgtttt cggcaaaggc
     8101 ggtttccagc atctgtacct gtaggtttag gaacgttaat gcttgtgcga tgctgtcatg
     8161 taatccttgc gcaatcaggt tgcgttcctg caatactgca agcaggcgtt tttcttcttc
     8221 ctgcttcgcg ctagcgagcg atacgcccaa ttgccgaatc agggtttgaa gcagcgtgcg
     8281 gtcgtctccg gtgagggaaa tgccgtctga aaagctgagc aacagcctgc ccaatgtttc
     8341 gttctggtac tcaatgggga agatttcctc atggtacttc cccaaatccg aagctgctgt
     8401 gccgcaatcc gcatgatgaa tggaaacata aacatcggat tcgccgtcca aacaaactct
     8461 gccggaatct gctcctacgg cgggcaggat acggtttaga aaatgttctg cagcctgttg
     8521 cggtatgtag gattggtgca ggtcccgtgt agtttggtac agcagggtca ggttttgatt
     8581 ttgtttttcg agactgcgtg tctgctcggc gacttgtcct tccaaatcat catataaaat
     8641 tttcaacctg ccgcccattt gattgaaaca acgcccgacc tgtttgaatt ccggcgtacc
     8701 gccttcggga accggaatat cgaaacacct ccgtccgatg cgttccgcac cttcccttaa
     8761 cgcctgcagc ggccggataa cccaaatctg gtgccaaaac agcatcagta cagacgacac
     8821 cagcgtcatc aacataattg cccattgaaa acgcctgagc caccatgtgt ttttttcgtt
     8881 ggcattttcc aatgcctgca aaaacagttc gatgtttccg gcaaagcggt agagatcgac
     8941 ctgagtcggt cgccggtagg actggagcgg ggggaggatg tgtgcctgcc aatctataat
     9001 cagcatggat tgtatcaaat cataagcaag aggggtgtcc gaaggaatca gcggatggat
     9061 ggcatcactt tgtgaaatac gattcaggct tttttcaaat tcgtcaacct gattgtctat
     9121 ttgggagcgg ggagatcctt cacccgccat gtatgccaga cggtatgcct gcattctcaa
     9181 gttgcccgcc tcttcgatga cggaggccgc gttttccaga cgcaaagaga gcagcagtgt
     9241 caaaacgaca gacaatgccg ccaacccgac ccacactccg gtcaggagtt tcaggcgtag
     9301 ggaaaggctg atgccgtctg aaaaacgggc tggcagtatc atgctcggcg aaaaattgtt
     9361 ctaaataatg caaacaatat cattctttgg gattagatac aactgctcag aaagaattgg
     9421 ttaaggaaaa cataatccgt accgcttcag tgttaaatca tgttatgata aaattcagat
     9481 aatatgaatt tatttgccgt ctgcttcaga cggcattttg agtcattggg aacggcagac
     9541 tgcaatcatg aaaacctcga acttttccaa gagaacatcc gcaatgaaaa cttttgccct
     9601 gatactggcc gacggtcagg cgagccgtat gggaggcgag gacaaggggc ttgctctttt
     9661 ggggggtaag gcactgatag atcatgtcat cgacagggtc aggccgcagg tcagccatat
     9721 cgccatcagc accaaccgga atttggaaga atatgctcga agaagtccgc atatttttcc
     9781 ggacgcacgg cagtggcagc atttcggccc gctttcggca ttgtgtaccg cagccaacga
     9841 tttgcagttg gcgactgccg actggctttt ggttgtgccg tgcgatatgc cgtatctgcc
     9901 gggcgatttg gtggcgaggt ttgaaaccgt gtcgaaacgc acaccgttgt gcaatgcgta
     9961 ttatgtggaa acgccgataa cgatgcacta caacattatg tatatccgcc cgcagattct
    10021 gcaaagcgcg attccctatc tgttttcggg tatgaaaaca ttaagaagct ggttgcagca
    10081 gcaaagggcg cggccggtca gattcgagtt tgacgggcat tttgccgact tgaacacgca
    10141 aatcgatttg caggagggat aagggcaaga ccgccgaccg gcgtggaaag gaaaggtcaa
    10201 gccataccgg gcggtttttg cccgaatcgg aggcataatg ctgtctgaag gcatttcaga
    10261 cggcattttt cgcggggaga tgctacaatt tgcaccattt ttaccgacac agggaaacag
    10321 gattatgttt acaggcattg ttcaaggatt gggaaaactg acggcaatcc accgcccgtc
    10381 ggaggcattt cacacttatg tcgtcgagct tccgcaagag gcggcggaca atctgcaacg
    10441 cggcgcatcg gtcgccaata acggctgctg cctgacgatt accgaaatcg aaggaaaccg
    10501 cgtcagtttc gatttaatgg cggaaacttt ggcaaaaacc aatttggggc tgctgaagga
    10561 aggcgattgc gtcaacatcg aacgggcggc gcgtttcgga gacgaaatcg gcggacacgt
    10621 catgagcgga cacattatgg caaccgtgcc tattgtcgaa atcgaacggg acgggttcaa
    10681 ccgcacggtt tggttttcgc tcccgcatga actcaaaccc tatatcctga ccaaagggtt
    10741 cgtcggcttg gacggttgca gcctgaccat aggcaaagtc gaagacggcc gtttcaatgt
    10801 ccatctgatt cccgaaactt tggaacggac gctgttcggc agcagaaagg tcggcgacag
    10861 gatcaacatc gaaatcgatc cgaatacgca ggcaatcgtc gataccgtcg aacggctgat
    10921 ggcgcaaaga tatgcaaagt gaggcagaga tggaattgaa cgaatttctc gataaagcct
    10981 atgccgtttt gcggcgtttg gatgccgtgc ttccgcccga acccgggcat acggattgga
    11041 acgcgcttgc cttccgctgg cagagtgcgg gcaaaaaagg ttttttggaa cacttgcccg
    11101 atccgcacac ctttcccttg gtaaggctgg cgggagtcgg caggcaaacc gaattgctgg
    11161 tgcgtaatac cgaacagttc attgtcggca gacccgcgaa caatgtattg atgagcggcg
    11221 cgcgcggaac aggcaaatcc tcgctggtca aagccctgct acacgaatat gcggataagg
    11281 gattgcgcct gatcgaagtc gataaaagcg atttaatcgg cctgccttac ctgttgacgc
    11341 ttttgaagga acgtccggaa aaatttatcg tattttgcga cgatttgtcg tttgaaagcg
    11401 gcgatgaaac ctataaggca ttgaaaaccg cgttagacgg cggtctgtct caacgttgcg
    11461 ccaacgtttt ggtttacgcg acttccaaca gacggcacct gatgcccgaa tattttgacg
    11521 agaatgccgg tacgacgggg atgcgggggg aaatccatca gaaagaagcg gtggaagaaa
    11581 aaatatccct gtccgaccga ttctgattgt ggctcagttt ttatccgttc gatcaaaacg
    11641 attatctggc ggcggtgcaa aattggctgg aagatttcgg cgtgccgtat gatgaaaccg
    11701 cacagatggc ggcattgcag tgggcgcaga cgcggggcag ccgttcggga cgttccgcgt
    11761 ggcagtttgc ctgcgactgg gcgggcaggc tgccgaaaca acgggcgttg tgagcgtttc
    11821 ggggattatt tgaggcagga agaaagccac atttgctgct gttgcggtgt gaggatatgg
    11881 aagaaccggt gttggatttc caattcgtcc accgcaaaat ccataccgga caaatagcgg
    11941 ctttcgacat aatcgcgcgc ctcgttccga ttaaaaacat ccgaggaaat gatttcgacg
    12001 acagaccggc ggcggctgtg ttcggaatgc ataaccttca aacgcgccct gtcgcccgcc
    12061 attttgaagg cggtgcggat tttacgcagc tcattgtgct gactttgggt cagcccgagt
    12121 cggcgtatgt cgcagttcgg ttgaaaatcg ttcgggggga tataagccgt ggcggcgtgg
    12181 gaaagctgac aggaaagcaa agccatactt aaaaaagagg cggcaggttt ggcaaaacgg
    12241 cagggagcag gcagtggcac ggcttttcct ttaatccaga tatttcggac aatatacttg
    12301 attgccgtgt gaaagatggt attatggcag ttaacttttg ttaataatgc tgtttcgggg
    12361 ctttcccgcg ttgagtccgc ccgtaaaggc attgaaggaa aaaatatgac cgcctaccgt
    12421 atcgcaccca gtattttgtc ggcagacttt gcccgcctcg gagaagaggt ggaaagcgtc
    12481 attgcggcag gtgcagatct gatccatttt gacgtgatgg acaaccatta tgtgccgaac
    12541 ctgaccttcg gccctatggt ttgcgcggcg ttgaagcctt atgcaagcgt gccgatcgat
    12601 gtgcatctga tggtcgaacc cgttgacgac ctgattcagt cgtttgccaa agcaggagca
    12661 tcgattatca cttttcatcc cgaagcgagc cgccatatcg accgcagctt gagcctgatt
    12721 cgtgatatgg gctgtcaggc ggggctggtg ttgaatccgg caacgcccgt atatctgttg
    12781 gaaaacgtat tggacaggct ggatatggtt ttgctgatgt cggtcaaccc cggattcggc
    12841 ggacaaagct tcatcccgca cacccttgaa aaaatccgcc gggtgcgggc gatgctggat
    12901 cggtacgaag cacaaagcgg gcggcacatc gccatcgaag tggacggcgg catcaaaacc
    12961 gacaatattg ccgccgttgc ccgagctggt gcggatacct ttgttgccgg ttctgcgatt
    13021 ttcggcaaac cagactataa ggcggtgatt gatgcgatga gggcggaact ggaaaaaagc
    13081 ggcaggctga accttgcgcc aatgattgaa atagaaatgc cgtctgaaaa ttagctctgt
    13141 ttcagacggc attgcgttat ttttcgacgg gcagcccgaa atgcaggtag gcgcgttcgg
    13201 tcgccatcct gccgcgcggg gtgcgttgca ggaagccttg ttggataagg tagggttcga
    13261 taacgtcttc gatggtgtct gtagattcgc cgatggcggc ggcaacattg tccaaaccga
    13321 ccgggccgcc gccgaatttg tgcaaaacgg cttcgagaaa tttcctgtcc atcacgtcca
    13381 gcccctgcgc gtccacgtcc agcatactta aagcggcatc ggcgatgccg ccgtcgattg
    13441 tgccgttgtt tttcacgtcg gcgaaatcgc gcacgcgtcg caacaggcgg ttggcgatgc
    13501 gcggcgtacc gcggctgcgt ttggcgattt cttccgcgcc ttcttcggac atatcgagct
    13561 gcaacagttg tgccgaacgg ctgacgatgg tggtaaggtc tcggttttcg taaaactcaa
    13621 ggcgggagac gatgccgaag cggtcgcgca acggattggt cagcataccg gcgcgggtgg
    13681 tcgcgccgat gagcgtgaag ggcggcaggt cgattttgac ggaacgggcg gcgggtcctt
    13741 cgcctatcat aatgtcgagc cggtagtctt cgagcgcggg atagaggatt tcttcgacaa
    13801 cagggctgag gcggtggatt tcgtcgatga acaatacatc gtgcggatca aggttggtca
    13861 aaagggcggc gaggtcgcct gcgcgttcga ggacggggcc gctggtttgg cgcaaattta
    13921 cgcccaattc tttggcgatg atgtgcgcca gtgtggtttt gcccagtccg ggcgggccga
    13981 agagcaaaac gtggtcgagt gcttcgccgc gttttttggc ggcttggatg aaaatggcaa
    14041 gctgttcttt ggctttgtct tgcccgatgt agtcgtccag cgttttgggg cggagggcgc
    14101 gttcgagcag ttcttcctgt gcggaggcgg tttgggcggc aacgatgcgt tgcggttgcg
    14161 cggcggtcag gttgtcggtt tgcagcatag tgttcccttt gtcgggtatg ccgtccgaac
    14221 ggtcggcggc gtttcagacg gcattgaaaa gataacggtc aaaagcgttt tatccgcggg
    14281 tttcgcgcca aacgagatag tcgcgcaggg gcggcatagg cgggttgatg cagtgggggc
    14341 agatgccggt ggtgtcttcg tcgtcgctgt cgatgtggta ggcgttgggg tcgaagcgga
    14401 tttgctgcat gacggcttgc gccaatgcct gcgcctgaac aacgtcgaaa ttgaattttt
    14461 cgaggatttc gttcaacagg cggatttcgc caccgctaaa ttccgcactg tgtttgagga
    14521 tgaggcgttg ataatcttcg ttgttgattt taggcaataa atcggttttc agggtcatga
    14581 ttttatgtcg ggggcaggat ggctgaagcg tgaattatag cggatatggc ggcggctgtt
    14641 gcaaagcttg gattgggtat cgtcctcaaa act
//
LOCUS       DAXIFD010000035        14515 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.035, whole genome shotgun sequence.
ACCESSION   DAXIFD010000035 DAXIFD010000000
VERSION     DAXIFD010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14515
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.035"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(287..4456)
                     /locus_tag="ACFOCN_000764"
     CDS             complement(287..4456)
                     /locus_tag="ACFOCN_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HFC6969948.1"
                     /translation="MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLS
                     VLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEG
                     ADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPA
                     AVYLDRFETGKISMGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGSAS
                     VGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHP
                     FAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENT
                     KAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLN
                     IGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPAN
                     GQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNING
                     SINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKT
                     DGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARN
                     LHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQH
                     RIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEAG
                     AERVAASAANWQAMGGSLNLQHFSWDRKTGISAKGGARGLHIAELHNFFKPPFEHNLV
                     LNGDWDVAYGRNARGYLNINRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGA
                     RFGRINADLDIGNAFGGNMANAPLGGRITASLPDLGTLKPFLPAAAQNITGSLNAAAQ
                     IGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFL
                     PVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRK
                     WVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRY
                     SPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLN
                     DGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFV
                     GPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGS
                     GSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQ
                     LTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGRRSSGGELTYTIRFDRFSGSD
                     KKDSAGNGKGK"
     gene            complement(4511..6358)
                     /locus_tag="ACFOCN_000765"
     CDS             complement(4511..6358)
                     /locus_tag="ACFOCN_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex family protein"
                     /protein_id="HFC6969949.1"
                     /translation="MHDTRTMMIKPTALLLPALFFFPHAYAPAADLSENKAAGFALFK
                     NKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAP
                     DNVKTMLHSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEY
                     YRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKAYPLAKLGNTRAAVNPDTATADL
                     NVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHY
                     SGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKG
                     YIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVR
                     DRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDG
                     KIGTTLGAFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNANVPSGLM
                     FRSGGASSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDA
                     AANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF"
     gene            6770..7999
                     /gene="sstT"
                     /locus_tag="ACFOCN_000766"
     CDS             6770..7999
                     /gene="sstT"
                     /locus_tag="ACFOCN_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HFC6969950.1"
                     /translation="MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLF
                     GSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIVLYLIGTFSAALTAVIAGM
                     VFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGA
                     ALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKL
                     LAVLLGCMAFIALVVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMA
                     LAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAYTQGIQVDFATALLLSLVA
                     TVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTD
                     VLFTAAADLGRQRNRAE"
     gene            8111..9604
                     /locus_tag="ACFOCN_000767"
     CDS             8111..9604
                     /locus_tag="ACFOCN_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6969951.1"
                     /translation="MFKRSVIAMACIVALSACGGGGGGSPDVKSADTLSKPAAPVVTE
                     DVGEEVLPKEKKDEEAVSGAPQADTQDATAGKGGQDMAAVSAENTGNGGAATTDNPEN
                     KDEGPQNDMPQNAADTDSSTPNHTPAPNMPTRDMGNQAPDAGESAQPANQPDMANAAD
                     GMQGDDPSAGENAGNTADQAANQAENNQVGGSQNPASSTNPNATNGGSDFGRINVANG
                     IKLDSGSENVTLTHCKDKVCDRDFLDEEAPPKSEFEKLSDEEKINKYKKDEQRENFVG
                     LVADRVEKNGTNKYVIIYKDKSASSSSARFRRSARSRRSLPAEMPLIPVNQADTLIVD
                     GEAVSLTGHSGNIFAPEGNYRYLTYGAEKLSGGSYALSVQGEPAKGEMLAGTAVYNGE
                     VLHFHMENGRPSPSGGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAVIDGNGFKGT
                     WTENGGGDVSGRFYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD"
     gene            complement(9680..9895)
                     /locus_tag="ACFOCN_000768"
     CDS             complement(9680..9895)
                     /locus_tag="ACFOCN_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969952.1"
                     /translation="MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGL
                     FVIILAALLVFGQYFSEKKMKDDGFIN"
     gene            complement(9888..10103)
                     /locus_tag="ACFOCN_000769"
     CDS             complement(9888..10103)
                     /locus_tag="ACFOCN_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HFC6969953.1"
                     /translation="MKEYKVVIYQESQLSSLFFGAAKVNPVNFSAFLNKQTPEGWRVV
                     TMEKDLRRMLLFFKREAYVVILERDRV"
     gene            complement(10178..11521)
                     /gene="argG"
                     /locus_tag="ACFOCN_000770"
     CDS             complement(10178..11521)
                     /gene="argG"
                     /locus_tag="ACFOCN_000770"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HFC6969954.1"
                     /translation="MSQNHTILQNLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAY
                     TANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAY
                     FNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPW
                     LDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIK
                     IVKPIMGVAFWDENVEVSPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGL
                     GMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLL
                     YQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSM
                     EKVEGAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLSLGEGSVLPQLGNKK"
     gene            11646..12446
                     /locus_tag="ACFOCN_000771"
     CDS             11646..12446
                     /locus_tag="ACFOCN_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HFC6969955.1"
                     /translation="MNAFNLIIIGDEILHGSRQDKHFAFFKSLLESKGLKLNQVQYLP
                     DEPDLLVRQLRRSFSDGIPTFVTGGIGATPDDHTRQAAAAALELPVVRHPEAAGFIEG
                     ITQKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNIAGFSIREHYFFPGFPVMAHPM
                     AEWVLDTYYAGRFNQTQRGSRSVYVFEQPESRITPIMEHIEQTYPGVRSYSLPSVGWT
                     HSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN"
     gene            12486..13472
                     /locus_tag="ACFOCN_000772"
     CDS             12486..13472
                     /locus_tag="ACFOCN_000772"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HFC6969956.1"
                     /translation="MQYRIRRENEAPEAKNAGETLWERDMMREVLLSAYQDRRRERMW
                     KNIWRAVSTLILVALIAGIFQKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKD
                     GMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPDIPVYLVAEDMCASG
                     CYYIAAAADKIYADSSSIVGSIGVIGSSFDATELMEKIGVKRRVKIAGSNKGMGDPFS
                     PETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLV
                     DGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKAGVREALQAVR"
     gene            14130..14392
                     /locus_tag="ACFOCN_000773"
                     /pseudo
     CDS             14130..14392
                     /locus_tag="ACFOCN_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086557955.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         3124 a         3675 c         4323 g         3393 t
ORIGIN      
        1 acctgtgtat cgctgtaaat cttagagatg gcggaatata gcggattaac aaaaaccggt
       61 acggcgttgc ctcgccttgg ctcaaagaga acgattctct aaggtgctca agcaccgagt
      121 gaatcggttc cgtactattt gtactgtctg cggcttcgtc gccttatcct gatttttgtt
      181 aattcactat atcgattctg ttcccttgca ggcggacggc ggcggcggac ggtggaaaag
      241 caggttttca aatgtccggt ttggcggcgc gccgtctgaa aaccgcttat tttcctttgc
      301 cgtttccggc ggagtctttt ttgtccgaac cggagaagcg gtcgaaacgt atggtgtatg
      361 tcagctcgcc gcccgacgaa cgtctgccga tacgggcaac cgcctgtatg gcgcgggtca
      421 gccggtaaat cagtttgacg gactgttccg cgctggagat gctgtattcg tagccgatgt
      481 agagtttgcc ggtcagttgt ttgccgacgg tcagcacctg ttcggcgggg ttgagttcgc
      541 cggtttgcgc gttgcggctg cgcttgctgg taaagcccaa atcatccacc agcccgatgc
      601 ggtcgttgat ttgcccggca agcagcgcgc ctgcggctgc ggacagggcg gcattgtcgc
      661 cgctgctgcc actgccggcg cggttgagga tgagccagga gagcttgtct ttttcactca
      721 tcggttcgtt tgccgtcagc gtaatgcgcg gactgttgag gctgcccaat atttccacgc
      781 ccgcaccgac gggggaaagg cggcgttcgg cgcggatgtt gaggttgggg tcgttgagcg
      841 ggccgacaaa ggagaccgtg cctttggtaa tgtccaaatc ctgcccgtat gccttataac
      901 gccctttgat gacgcggacc gtgcccacgc cccgcacgct tccgcccgat tgggcggtca
      961 gggtcagttt gccgcctatg gtaacgtccg cgccgtagcc ggcgaagcgg atgccgtcat
     1021 tgaggtctaa agtcaggttc atattgacgg ggagcggtgc cgccgcctct tttttaactt
     1081 cgcctaatac gacgacatcg tcgccgacgg acggcatcga ggatttttgc gaaccgaaca
     1141 gcccctgatc cgttttaatc atcccggtaa cggatatgcc tttttgcggc gaatagcgca
     1201 ggcgggtgtt gccggaaacc gtcaggcggc ggttagggcg ggacaggatg cggtatttgt
     1261 cgaacaccgc gccgatatcg acatcgggtc cgctgttttc cataccgacc gtgccggaga
     1321 gttccgccgt tccttcgtgc cggaatttca ggctgtcgat tacccatttt ctgcccgcga
     1381 tatgcgaacg cagcgagccg ttgtccaaga tgatgccttg ggtttggttg cggtaataga
     1441 gcttgtcgcc gttgatgctg ccgcccaagt gcgggtcggc gatgctgccg ccgagggtta
     1501 cggcggcatt caggctgcct ttgacggttt gtccgacggg caggaagttg cggaatactt
     1561 cggcatcggc aacggtcagg ttgagcctgc cgcccaaagg cgcggtatcg aaagagcggc
     1621 tttgcccgac ggtgatgttg ccgttgattt tcccgtagtt gctgctgccg ttgacggcgg
     1681 cattgacgga cggagagccg acccgtccgc cgatttgcgc ggcggcattc aggctgccgg
     1741 taatgttttg cgcggcggcg ggcagaaagg gcttcaatgt gcccaagtcg ggaagggagg
     1801 cggtaatcct gccgccgagc ggtgcatttg ccatattgcc gccgaaggcg ttgccgatgt
     1861 ccaaatcggc gttaatccgc ccgaaacgtg cgccgccgtc aagcaggatt ccgatacggt
     1921 cgttttgaaa gcgcgttttc agggaaaatg cgttcaaacc caaagcctgc ccgccgggca
     1981 atacggcatc gccgctttgc cgattgatat tgaggtagcc gcgcgcgttg cgcccgtagg
     2041 cgacatccca gtcgccgttt aaaaccagat tgtgttcgaa gggcggtttg aagaaattgt
     2101 gcaactcggc gatatgcaga cctcgtgcgc cgccttttgc cgatatgccg gttttcctgt
     2161 cccaggaaaa gtgttgcagg ttgaggctgc cgcccatagc ctgccaattt gccgcacttg
     2221 ccgccacacg ttccgcaccg gcttcgagcg tcatacggtt ttgcagtttt aggttgaatg
     2281 cgccgccgat gtcgaggatg ccgatgctgc ccttccatag ggtaagttcc ctgttgatgc
     2341 cgcctgaagc gtccaaatcg aatttgaacg gtttgccatc cagcgtcatg gcggcgtgtg
     2401 tgcggatgcg gtgctgcacg cccgtgccgt ccagcatcag gtcggcggta tcgacaaccg
     2461 ccgctccgcc cgacagcgaa aggcggctgc ctttgatgtc ggcgcgtatc gggcggcttg
     2521 tgtcgggcga acctttgagc gtgaaatcga gcgaacggat gtctgccgcc ttgccgatgt
     2581 gcaggttgcg cgccgcgccg gaaaggtcgg tttcaaaggt tcggatgccg ccgtccaaat
     2641 cgccggaaag gtgtccgcgt acatttaaag accccgcgag tccgaaaccg aaacgggata
     2701 aatcgggtgc ggtgatgttg aggttgagcc ggtcgccttt tttgccgaag ccgccgtctg
     2761 ttttaataat gttccgcccc agccgcaaat cgacggcggc acgcggaagg tggcgggact
     2821 cgtaaacaat gtcggcactg ccggcaatcg gtacgccgtt gaacgtgccg ggtaaaaacc
     2881 gcattttgcc tgtgaatttc tcttttgcca gttcgccggc aaggtttatt gagccgttga
     2941 tattgcctgc cggaagttgc ggattgatgc gcgaagggtc gaatgcgcgg gaacggatgt
     3001 ccagcttgag caggcggtct ttaaacagct cgagatagcc ttgcgcggtc aggctgcctt
     3061 gcccggcggc gatgttgacg gtgtcgagca ccagtttccg ctgtccgttt gcggggtcgc
     3121 ttgcaatggc gaggctgccg tccgtgcgcg ccgtgccgat gccgagttgc caagagattt
     3181 tgggcgaggc ggtcgtgcca ccgatgccga tgctgccgtc caacctgcct ttgaacgcgg
     3241 tttgcagtac gtcttccgcg ccgacggagt tgatgcctat atttaaatcg aggatgtctt
     3301 tttcggtgtc gattttgccc gacagcctga tgccgccccg tccgagcagg gcggcggacg
     3361 tattgccgat atgcaccgtg ccgtcctgcc ggatgacaaa gccgcctaaa acctgacgga
     3421 cggggatgcc gttgcggtcg gcaaagccgg ctttggtgtt ttccaaatcg agcgaacctt
     3481 ccagcgcgat gccgtctgaa aacgacggga tggcggtcag gtcgaaattc agcccggcat
     3541 cgggcaggga gggcacgaag gcggccgggt tgatgttgaa ccctttgacc agcacttctt
     3601 ccaatgtttt atccaatgat tcggcaaacg ggtggatgac ggattttccc gagaggcgga
     3661 tattgccgcc gtcgatcgcc agttcggcgc gcacatcctt caggctgccg ctcagccgag
     3721 ccgtactgtg tatggttttg ccttcgagtc cgcctttggt gtaaatggcg gtatcgaggg
     3781 caaacggttt tttcaagccg accgaggctg accccgacga actgctccac ggcgtgtcgg
     3841 cagccttcag gtcgaggcgg tgtcctttgc ggtcgtaacg gtatgaagca tccagccgtt
     3901 cgagatagac ggtttgtttg tcaaaggctt tgcccatgct gattttgccc gtctcgaagc
     3961 ggtcgagata gacggcggca ggcaggtcta tgctgtcggg aaggctgagc ggcgggcgtt
     4021 cttctttagg cggagtcggt ttggtaacga tggcgatgtc gccggcggaa atttcggtaa
     4081 tgtgcaggct gcggcgcatc agttcggacg gtttccacgc gaagcggaag cggctgattt
     4141 taaggtctgc cccctcggtt tctatcgacc agttgtcgcc gtcgaagccg tcgagcagcg
     4201 tgcctttgag gttttgggag gaaatgttta cgccgaacca agacgggatt tggtacagcc
     4261 cgaagcgcaa acccgcttcc gtgccggcga gccagccgag gaaacatact gccaaaatca
     4321 gaacagacag cagtgccgcc gacagcttca gcagcgggcg gcgttttttt gccggcgggg
     4381 tagggcggtg ttcagacggc attttgcgcg tgccgttttc ggtcggatcg gtatctgtcg
     4441 gtgcggtatc ggtcataatg tctgtttcaa aatggtttgc tgcaatgccg tctgaagcgg
     4501 ccgtatcggt ttagaagcgc gttcccaagc tgatgtgcca gcggattttc ttgtcgctgt
     4561 gcccgtaggc gatgtcgaag gaaaacggcg cgagcgggct gaaccagcgc acgcccagtc
     4621 ccgaaccgtg tttcagcttc atacgtttga aattggcggc ggcgtcgccc atatcgtgga
     4681 acaccgcgcc ggaaagggtg cgcgtaaacg gcagttggta ttccaggctg cccaccaaga
     4741 gggcgcgttc gggcaggacc gatccgttcg ggccggcaag cccgatgctg tcgagttcgt
     4801 aaccgcgcac ggaagacgcg ccgccgctgc ggaacatcag ccctgaagga acgttggcat
     4861 tgtcgcgggc aacggtgtaa cccgcttgtc cgcgtatgat gaacgtgccg agttttttgt
     4921 tttcgggcgt gaagaaataa cctgcgcggg cagaggtgcg gatcagcgcg gtggaggaca
     4981 ggaatgcgcc caaagtcgta ccgattttgc cgtcgaggta atggccgttt tcgggatgca
     5041 gcacgttgtt gagcagctgg cgtttccaag aggcggtcag catcgtggcg tggctgttgc
     5101 ccaaatcgat atccgagccg gggattttcc ggccttctgc gagaaactcc gcccccagcc
     5161 tggcatcgat gcccgcgcgg tcgcgcacat accagatgcc gccggagaag gcgcgttttt
     5221 cgaggttttg ggtggtcgaa cggttgtagg aaacgttgct tgtccagtag ttgccccgat
     5281 agttgcgcgg ctggctgatg ccggcggcaa gcgtggtttc gtatttgtcc atatcccaga
     5341 cgaccgaacc gatatagcct ttgttgaaga ggttgtaata gtcgtaggcg attttgccgc
     5401 ccaaaccgta ttccgaatcg aggcggatgc cggtttcgag cttgtggcgt ttgacctcgg
     5461 ttacgctgac tttgacgggg acgcggtcgc cttggaggcg gtcgaagtcg gcttgtacgg
     5521 acgcgccgga ataatgcccg ttttgttcga gcgcctgttg gaagtcgagc agcaggtcga
     5581 ggtcgtaggg cgtgcccggt tggaagcgcg ccaagccgga gacgatttgt tcggggtaac
     5641 gctgcgtgcc ggtaatttca aagtcgccga aggcgatggg gcggccgctg tccacgacga
     5701 cgttcaaatc ggcggtggcg gtatcggggt tgacggccgc ccgggtgttg ccgagcttgg
     5761 caagcgggta ggctttgcgc gttaccgcgc cgaggacgga agttttgctg ttttcccaac
     5821 tgtcctgatc gaaatcactg cctaccggct gctgccagtt ttccagcgcg ttgcggtagt
     5881 attcggcgag gttgccgtct gaaaggatgt cgccgaggat ggcgacgccg acgttggcga
     5941 ttttggtgcg cgggcccggt gtgatgtgta ccgtataagc tccgtctttt tccgtcaggc
     6001 tgactttgct gctgaaatag cctttgctgt ggagcattgt tttaacgttg tccggtgctt
     6061 cttcggcgag gaagcccgtc tgttccttgt ccaatacttc ttcctgctgc tgcgtgatga
     6121 gcggcaggtg ttcttcgacc atatctttga tttcactatc ctgcgtgtcg atgcggacgg
     6181 ggaatttggg ttttaattta actgattcgg tgtcggggct tttgtttttg aacaatgcga
     6241 aacccgccgc cttgttttcg gaaaggtcgg cggcaggcgc gtatgcgtgc ggaaagaaaa
     6301 ataaagccgg caggagcagg gcggtcggtt taatcatcat ggtacgggtg tcgtgcatcg
     6361 gtgtggcggt tttcgattct aacactgttc ggacagggtt tcgaacggcc gtttttgtgt
     6421 tgttcgtacg gggcgggacg cttcagacgg catactgccg ccggtatttc ggaggttgcg
     6481 gcccgccgga aatgtatctg cttgttttaa ggtattttgt ttctaatccg catatggaaa
     6541 acaggctgcg tttcggaata gtgccggaaa ataggcagga ttaaataaat ttattttcgt
     6601 tcaataaatt aaaccgttgc gccgaatgat aaagcaaagc ctgtccggca ctgcataggg
     6661 caaatcaacg caaccttaaa acacagccga aaaataaaaa aaaacacaga gaatgagttt
     6721 tcttttaaaa tacaacattt tttaacatat cacaacataa ggaagaatta tggcgttcgg
     6781 caaatcctta tttcatgcga tcggccgcgt cagcctggtc aggcagattg ccgccggttt
     6841 ggcgttgggc atcgtaatcg gttcggtttc cccgcaactg ggcttggcgg caggcttgtt
     6901 cggcagcctg tttgtcggcg cgctcaaagc ggtcgcgccg gttttggtat ttattttggt
     6961 ggcggccaca atcgcgcagc accaaaaagg caacaaggcg catatcaggc cgattatcgt
     7021 cctttacctc atcggtacgt tttccgcagc cctgaccgcc gtcatcgccg gtatggtttt
     7081 cccgacgcac attgttttgg cgggcgcggg cgatgtgtcc gccgcgccgc cttccggcat
     7141 tgtggaagta ttgaaatcgc tgctgatgaa cctggtcgcc aacccgatta acgcgattgc
     7201 caatgccaac tatatcggca ttttggcttg ggctttggtt ttgggcgcgg cgttgcggaa
     7261 tcacggttcg gacgttacgc ggcaggtcgt tgccgatttg gcggaagcgg tttccaccgt
     7321 cgtgaaatgg attatccgtt ttgccccttt gggcattttc gggctggtgt cgtccacaat
     7381 cgcggagacg ggtttcggcg cgctggcggg ttatgcgaag ctgcttgcgg tactgttggg
     7441 ctgtatggcg tttatcgcgc tggtggtcaa tcccgccatc gtgtggtgga aaatccgccg
     7501 caacccttat ccgctggtgt ttacctgcct gcgcgaaagc ggcgtgtatg ccttctttac
     7561 ccgttcttcc gccgccaata tccccgtgaa tatggctttg gcgaaaaaac tggggctgca
     7621 cgaagacact tattcgattt ccatcccgtt gggggcgacc gtcaatatgg gcggcgcggc
     7681 gattacgatt accgttttgg ctatggcggc ggcgtacacc caaggcatac aggttgattt
     7741 tgccaccgcg ctgctgttga gcctggtggc gacggtcagc gcgtgcggcg cgtccggtgt
     7801 ggcgggcggt tcgctgctgc tgattccgct ggcgtgcagc ctgttcggca tcagcaacga
     7861 tgtcgctatg caggtggtcg ccgtcggctt tatcatcggc gtgattcagg attcggcgga
     7921 aacggcgttg aattcttcaa ccgatgtttt gtttaccgcc gccgccgatt tgggcagaca
     7981 gagaaaccgg gcggaataaa ccaagctatg ccgtctgaag cccttttggc gttcagacgg
     8041 catattttta caattttatg ggcatatggc ggaaacaata ccggctgcct tgaatatgaa
     8101 ggagatgatg atgtttaaac gcagtgtgat tgcaatggct tgtattgttg ccctttcagc
     8161 ctgtgggggc ggcggtggcg gatcgcccga tgttaagtcg gcggacacgc tgtcaaaacc
     8221 tgccgcccct gttgttactg aagatgtcgg ggaagaggtg ctgccgaaag aaaagaaaga
     8281 tgaggaggcg gtgagtggtg cgccgcaagc cgatacgcag gacgcaaccg ccggaaaagg
     8341 cggtcaagat atggcggcag tttcggcaga aaatacaggc aatggcggtg cggcaacaac
     8401 ggataatccc gaaaataaag acgagggacc gcaaaatgat atgccgcaaa atgccgccga
     8461 tacagatagt tcgacaccga atcacacccc tgcaccgaat atgccaacca gagatatggg
     8521 aaaccaagca ccggatgccg gggaatcggc acaaccggca aaccaaccgg atatggcaaa
     8581 tgcggcggac ggaatgcagg gggacgatcc gtcggcaggg gaaaatgccg gcaatacggc
     8641 agatcaagct gcaaatcaag ctgaaaacaa tcaagtcggc ggctctcaaa atcctgcctc
     8701 ttcaaccaat cctaacgcca cgaatggcgg cagcgatttt ggaaggataa atgtagctaa
     8761 tggcatcaag cttgacagcg gttcggaaaa tgtaacgttg acacattgta aagacaaagt
     8821 atgcgataga gatttcttag atgaagaagc accaccaaaa tcagaatttg aaaaattaag
     8881 tgatgaagaa aaaattaata aatataaaaa agacgagcaa cgagagaatt ttgtcggttt
     8941 ggttgctgac agggtagaaa agaatggaac taacaaatat gtcatcattt ataaagacaa
     9001 gtccgcttca tcttcatctg cgcgattcag gcgttctgca cggtcgaggc ggtcgcttcc
     9061 ggccgagatg ccgctgattc ccgtcaatca ggcggatacg ctgattgtcg atggggaagc
     9121 ggtcagcctg acggggcatt ccggcaatat cttcgcgccc gaagggaatt accggtatct
     9181 gacttacggg gcggaaaaat tgtccggcgg atcgtatgcc ctcagtgtgc aaggcgaacc
     9241 ggcaaaaggc gaaatgcttg cgggcacggc cgtgtacaac ggcgaagtgc tgcatttcca
     9301 tatggaaaac ggccgtccgt ccccgtccgg aggcaggttt gccgcaaaag tcgatttcgg
     9361 cagcaaatct gtggacggca ttatcgacag cggcgatgat ttgcatatgg gtacgcaaaa
     9421 attcaaagcc gttatcgatg gaaacggctt taaggggact tggacggaaa atggcggcgg
     9481 ggatgtttcc ggaaggtttt acggcccggc cggcgaagaa gtggcgggaa aatacagcta
     9541 tcgcccgaca gatgcggaaa agggcggatt cggcgtgttt gccggcaaaa aagagcagga
     9601 ttgatgctga tgccgcctga agcgggggcg ttcagacggc attgtgatgt ttgggttgcg
     9661 ggtccggttc aagtccgcat cagttgataa acccgtcgtc tttcattttc ttttcggaaa
     9721 aatactggcc gaataccagc aaggcggcga ggatgatgac aaacagcccc gccatagtca
     9781 gtgtgatttt gaagaacaat tccgcttcga gaaaagaaaa ccaaagttgc acaatcagca
     9841 gcagcaccca gccggcaaac agtccgagac aggcataaac gccaagctta aacacggtcc
     9901 cgctccaaaa tgacgacgta ggcctcgcgt ttgaaaaaca acagcatacg gcgcaaatct
     9961 ttttccatcg ttacaacccg ccagccttcg ggggtttgtt tgttgaggaa cgcgctgaaa
    10021 ttgacggggt tgacctttgc cgcgccgaaa aacaggctgg acaactggct ttcctgataa
    10081 atgacgactt tgtattcttt cataggattc cttttaacat aagggatcat cttttcagac
    10141 gaccccttaa gttgctaatg atgcaaaaca gcaaacctta tttcttattg cccaactgcg
    10201 gtaataccga gccttcgccc agcgacagca aaccgctttg cgagtagatg cccagtttgg
    10261 cgcgggtgtc ggtgatgtcg aggttgcgca tcgtgagctg tccgatgcgg tcgagcgggg
    10321 taaacgccgc accttcgact ttttccatac tcaggcgttc gggttggtag gtcaggttgg
    10381 gcgattcggt gttcagaatc gagtagtcgt tgccgcgccg cagttcgagg gtaacttcgc
    10441 cggtaacggc tttggcgacc cagcgttggg cggtttcgcg caacatcaag gcttggctgt
    10501 cgaaccagcg gccttggtag agcaaacggc cgaggcgcag gccgttgatg cggtattgtt
    10561 cgatggtgtc ttcgttgtgg atgccggtca ccaagcgttc gtaggcgatg tggaacaacg
    10621 ccatacccgg ggcttcgtag atgccgcgcg atttggcttc gatgatgcgg ttttcgattt
    10681 ggtcgctcat acccaagccg tggcggccgc cgatgcggtt ggcttcgagg aagagttcga
    10741 cggggtcggc gtattctttg ccgttcagtg caaccggcac gccttcttca aagcgcacgc
    10801 tgacttcttc ggggctgact tcaacgtttt cgtcccaaaa ggcaacgccc ataatgggtt
    10861 tgacgatttt gatgcccgag ttcaaaaatt ccaagtcttt ggcttcgtgg gtcgcgccga
    10921 gcatattgga atcggtggag taggcttttt caaccgacat tttgtagttg aagccgttgg
    10981 caatcagaaa ttcgctcatt tcgtgacggc cgccgagttc gtcgataaat tgctggtcga
    11041 gccagggttt gtagattttc agcgcgggat tggtgagcaa accgtagcgg tagaaacgct
    11101 cgatgtcgtt gcctttgtag gtgctgccgt cgccccagat gtttacgtcg tcttctttca
    11161 ttgcggaaac aagcatcgtg ccggttacgg cgcggcccag aggcgtggtg ttgaaatagg
    11221 cgatgccgcc ggtggaaacg tggaacgcgc cgcattggat ggcggcgatg ccttcgtgtg
    11281 ccaactgcgc gcggcagtcg attaagcggg cgttttccgc accgtattcc atcgcttttt
    11341 tgggaatggc gttgtagtcg tcttcatcgg gctgaccgag gttggcagtg taggcataag
    11401 gcagtgcgcc tttgagtttc atccacaaca gcgcggcgga ggtatcaagt ccgccggaga
    11461 aggcgatgcc gactttctga ccgacgggga ggttttgtaa aatagtatgg ttttggctca
    11521 tgaaaaaatc ctcggtagct tgaaaaatca aagccattat cttataaata ggaaatattg
    11581 tcagccatca tgccgtctga acgggtattc cgccgtttca ggcggtattt aaaaccgaaa
    11641 acattatgaa tgcgttcaac ctcatcatca tcggcgacga aatcttacac ggcagccgcc
    11701 aagacaagca tttcgccttt ttcaaatccc tgctcgaatc caaagggctg aagctcaatc
    11761 aggtgcaata tctgcccgac gaacccgatt tgctggtcag gcaactgcgc cgcagctttt
    11821 cagacggcat accgacgttt gttaccggcg gcatcggcgc cacgcccgac gatcataccc
    11881 gccaagcggc cgccgccgct ttggagttgc ccgtcgtccg ccatcctgaa gccgccgggt
    11941 ttatcgaagg cataacccag aaacgcggcg agccgcttga ttcgccggaa cacgcccaac
    12001 gcctgaaaat ggcagatttc cccgaaggcg cggaattggt gcccaatccg tttaataata
    12061 tcgccggatt ttccattcgc gagcattatt tcttccctgg ttttcctgtg atggcgcacc
    12121 cgatggcgga atgggttttg gatacttatt acgccggccg cttcaaccaa acccaacgcg
    12181 gcagccgcag cgtgtatgtg ttcgagcagc ccgaatcgcg cattacgccg attatggagc
    12241 atatcgagca aacttatccc ggcgtgcgtt cgtacagcct gcccagcgtc ggttggacgc
    12301 attcagacgg cacgcaggtc aaaccgcaca ttgagttcgg catcaaagcc gaaggagaag
    12361 ccgtcaacct tttggacgcg gcgtgggcgg aagtgttgca cagcttggac ggattgggag
    12421 cagagctgaa aaatcgggta aactgaaaac cgtttgccca aatcggacga tatttaagga
    12481 aaaccatgca ataccgaatc agaagagaaa acgaagcacc cgaagcaaaa aatgcggggg
    12541 aaaccttatg ggagcgcgat atgatgcgcg aagtgctgtt gtccgcctat caggacaggc
    12601 gcagggagcg gatgtggaaa aacatctggc gcgccgtcag caccctgatt ctggttgccc
    12661 tgattgcagg cattttccaa aaagacgaag ccgcattgca gttggcgggc aacacgccgc
    12721 ataccgcagt cgtcaacctg tacggcgaaa tcggcaacgg tgtagaagac caggtcaaaa
    12781 aactcaaaga cggtatggag gccgcctaca aaaacccgca ggcaaaagcc atcgtcatcc
    12841 gcgccaacag ccccggcggt tcgcccgtcg tctccaacac cgcttttgaa gaaatacgcc
    12901 gtctgaaagc gcaacatccc gacattcccg tttatctcgt ggcggaggat atgtgtgcat
    12961 ccggctgcta ctatattgcg gcggcggcag acaaaattta tgcggactcg tccagcatcg
    13021 tcggcagcat cggcgttatc ggcagcagtt ttgatgctac tgaattaatg gaaaaaatcg
    13081 gcgtgaaacg cagggttaaa attgcaggca gcaacaaagg catgggcgat ccgttttcgc
    13141 ccgaaacgcc cgaacagtcg aaaatctggg aagaaatgct gaccggcata cacggcgagt
    13201 tcatcaaagc cgtcaaaacc ggacgcggcg gccgcctcaa attccgacaa tatcccgacg
    13261 tgttcagcgg tcgcgtgtac acaggcgcgg atgcgctgaa agtcgggctg gtggacggac
    13321 tcggcaatat ttacagcgtg gcgcgagacg tggtcaaagc ccccgatgtg gtggattaca
    13381 ctccgaagga cgatttcggc agaatcttgg gcagacgctt cggcgcagaa ctcaaagccg
    13441 gcgtgcgcga agccctgcag gccgtccggt agcgttgttt acagtatttc taagggaata
    13501 ccaaaataaa aatatacaca aaaacactca cctccccagt atgctgccac taagtcagcc
    13561 gcgtcactat ttaccgtgca cttaaagccg taaaaggcag gttgtccccg ggaggttttg
    13621 tgcatcctga taccgatcgg ttgttgttgc tcaaaggaca gaaggccgct gataaacgag
    13681 attacctgtt tgtcgctatt gacgattttt atactctgcc actttgccgg acaaaaccgc
    13741 agacagtgct gccaagtttc tgaccgaaca tctggccgac ccctgcttgt acctgattga
    13801 gtacgtttac tctgacaatg ataggtaata taaagagccg tccaacatgc tttcggtgca
    13861 gcttgttatg ataacgggat tggttggagg cttgcccgat ttgcttgtcc gcagaccaac
    13921 ggtaaggcgg agcgggttat ccgtaccttg atggagatgt ggcatgagga acagtcgttt
    13981 gacagtccgg aacatcggca aaaggagttg tgctgcttta ttaatttagg ggctgcccta
    14041 gatcactagg gaaattcaaa ttaagttaga attatcccta tgagagaaag tcgtctaagc
    14101 cggtaataaa caaaataaac tcattttgtt atcgtggcta tgatgtattg gatgcgggcg
    14161 aatttagcca tttccgtatc aatcacagca cacattttgc cgaacgacaa aaccatatta
    14221 atggaactga gaacttttgg aatcaagcaa aatgtcattt acgcaagttt aacggcattc
    14281 ccaaagcgca ttttgagctg tatttaaagg agtgcgaatg gcgttttaac aacagtgaaa
    14341 taaaagttct tgttccattt taaaacaatt agtaaaatcg agtttatcct agttgtccag
    14401 ggcagcctca tctctttata gatagctgct taccaagtat ccttaattgc taattcaagc
    14461 caatcttcaa aactattaaa aaattcatgg ttttctatat tatctaaatt aatga
//
LOCUS       DAXIFD010000036        14300 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.036, whole genome shotgun sequence.
ACCESSION   DAXIFD010000036 DAXIFD010000000
VERSION     DAXIFD010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14300
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.036"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(111..539)
                     /locus_tag="ACFOCN_000774"
     CDS             complement(111..539)
                     /locus_tag="ACFOCN_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family sulfur transferase"
                     /protein_id="HFC6969957.1"
                     /translation="MAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQ
                     PDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCS
                     LLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV"
     gene            complement(604..2352)
                     /locus_tag="ACFOCN_000775"
     CDS             complement(604..2352)
                     /locus_tag="ACFOCN_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M61 family metallopeptidase"
                     /protein_id="HFC6969958.1"
                     /translation="MIHYKITPSPLDHEWHILLTFTQDDDLPIEISLPNWVPGSYLIR
                     DFSRHITSIHASCNGTSMPLEQIAKNRWHAAAVRGEWQIRYTVYAFDLSVRGSFLTTE
                     RGFFDGSCLFLKVEGTETLPHRLELTGIPSEWRIATTLPETGRFVFQAASYAELIDRP
                     VEMGLIEFLDFEAAGIPHTIALSGIYPDFDRNRLVSDIKKICETELAVFSSPAPFQNY
                     LFLLHVGDHIYGGLEHADSTALLADRHSLPPFGMTDADDAYTTLLGLFSHEYFHAWNV
                     KSIKPAAFAPYDLDKENYTEQLWAFEGITSYYDDLFLARSRTISPESYLNLLAQGITR
                     IQQTRGRLRQTLAESSFTAWNKFYKPDENSPNAIVSYYQKGALAALCLDLIIRNRSNG
                     RHSLDTIMDKLYREWRDTHSGIPEKHWQIRCQEITGLDLEDFFQKALYSTEDLPLAEC
                     LATAGVGLTFLPLPRQHGGGYAEHICPVPSAGDFGARFKQNTDHIVLTHVFNGGSAES
                     AALCPQDKIIALDGYACTDFTAQWARYHVNAKINIHFFRAGILRQTVLTVQAAAADTA
                     ILHITDRNLLDNWLFG"
     gene            2679..4112
                     /gene="ccoN"
                     /locus_tag="ACFOCN_000776"
     CDS             2679..4112
                     /gene="ccoN"
                     /locus_tag="ACFOCN_000776"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HFC6969959.1"
                     /translation="MDTQTYNYKVVRQFAIMTVVWGIVGMLVGVIVAAQLFAPALDLS
                     NIGPWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGGWLPAFTFWGWQ
                     AVIVAAVVSFPMGWTQGKEYAELEWPIDILITLVWVAYAIVFFGTIAKRKIKHIYVAN
                     WFYGGFILAVALLHIVNNISIPAGLMKSYPVYSGAIDAMVQWWYGHNAVGFFLTAGFL
                     GMMYYFVPKQAARPVYSYRLSVVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVLSL
                     ILFAPSWGGMINGIMTLSGAWDKLRTDPILKFLIVSLSFYGMSTFEGPMMSIKTVNAL
                     SHYTDWTVAHVHAGALGWVGFVTIGSVYYMIPRLFGKEQMHSTKLVEAHFWIATIGVV
                     LYIAAMWIAGVMQGLMWSSLNDDGTLTYSFVESVKRTMPYYMIRFAGGLLYLSGMCIM
                     AYNVYRTAIGGKAVDAEIPAVSQTQHH"
     gene            4139..4750
                     /gene="ccoO"
                     /locus_tag="ACFOCN_000777"
     CDS             4139..4750
                     /gene="ccoO"
                     /locus_tag="ACFOCN_000777"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HFC6969960.1"
                     /translation="MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPAP
                     GVKPYNALQVAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGS
                     KRTGPDLARVGGRYSDEWHRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKAL
                     RKVGTPYSDEEIAKAPEALANKSELDAVVAYLQGLGLALKNVR"
     gene            4755..4925
                     /locus_tag="ACFOCN_000778"
     CDS             4755..4925
                     /locus_tag="ACFOCN_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcoQ/FixQ family Cbb3-type cytochrome c oxidase
                     assembly chaperone"
                     /protein_id="HFC6969961.1"
                     /translation="MDINGIRALFTVWIFICFLLVLYIVFNRRNKKNYDNAANSIFDE
                     NQDAQDKKSENR"
     gene            4949..5812
                     /gene="ccoP"
                     /locus_tag="ACFOCN_000779"
                     /pseudo
     CDS             4949..5812
                     /gene="ccoP"
                     /locus_tag="ACFOCN_000779"
                     /inference="COORDINATES: protein motif:HMM:TIGR00782.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
     gene            5936..6284
                     /locus_tag="ACFOCN_000780"
                     /pseudo
     CDS             5936..6284
                     /locus_tag="ACFOCN_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
     gene            6486..7895
                     /locus_tag="ACFOCN_000781"
     CDS             6486..7895
                     /locus_tag="ACFOCN_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HFC6969962.1"
                     /translation="MDTQIKTEADNQSNRRYLTVWRWHFYAGLLVMPFLTLLAVTGLG
                     MLLFANITGKEGERIHVVPQATVQPLSVQAEAARSAVNPETSSVVQYIAPRADDMVAV
                     FRVNNEGKATMVAVDPYTAKVVSTMPRNQGWYYAMDEIHSDMMLGSTGDYLLETAASL
                     TIIMIISGLYLWWVKRRGIKAMLLPPKGRARSWWRNLHGAFGTWVSLILLLFCLSGIA
                     WAGIWGGKFVQAWSQFPAGKWGVEPNPVSVVPTHGEVLNDGKVKEVPWVLELTPMPVS
                     GTTVGKDGINPDEPMTLETVDRFAREIGFKGRYQLNLPKGEDGVWTLSQDSMSYDMIS
                     PFADRTVHIDQYSGKILADIRFDDYNPFGKFMAASIALHMGTLGWWSVLANVLFCLAV
                     IFIGISGCVMWWKRRPTGAVGIVPPAQKVKLPVWWMMALPLLAIALLFPTALLAIAVI
                     WLLDTLLLSRIPVLRRWFK"
     gene            7997..11206
                     /gene="recC"
                     /locus_tag="ACFOCN_000782"
     CDS             7997..11206
                     /gene="recC"
                     /locus_tag="ACFOCN_000782"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HFC6969963.1"
                     /translation="MFYLYQSNRLETLAALFARIQKVKPLKSVLQPEQIIVQSQGMRR
                     YLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSE
                     AFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILS
                     LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYL
                     QLLHKLSEHCDVFVFALNPSGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGR
                     DFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVS
                     AHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQAL
                     PYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLL
                     HDMVADLNVRWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADV
                     NQTAMFGRFAAFLETLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKSVQNLE
                     NEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPF
                     KVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLS
                     YIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGG
                     RSDGIFGTRTDYAAALGQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQ
                     QQLAWSEPHIGEAWEPAEPFEPQHAEQIAEIYIEARREGQDFSQTAARIGAESLLPSG
                     ELGRLWQQNFQTAAKQIDTAVLNSPKLPPLPYAIPSDGQILKGSLSNLYQCGQVFYAY
                     GKPNAPQRVAFLLEHLIFCAVMPSETETRQTFIVQSGETEILVEIAQDRALQLLSEWM
                     AFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYHGNKVSKGQKDYTEVA
                     LVFGNASQNPLEQPLFENLARLLADTLAAAEKKEETGEA"
     gene            complement(11274..12842)
                     /gene="mtrF"
                     /locus_tag="ACFOCN_000783"
     CDS             complement(11274..12842)
                     /gene="mtrF"
                     /locus_tag="ACFOCN_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041421321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family antimetabolite efflux transporter
                     MtrF"
                     /protein_id="HFC6969964.1"
                     /translation="MSQTDTQRDGRFLRTVEWLGNMLPHPVTLFIIFIVLLLIASAAG
                     AYFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILTHTVKNFTGFAPLGTVLVS
                     LLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVVFTGILSNTASELGYVVLIPLSAII
                     FHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAGITQQAAQIIHPDYVVGPEAN
                     WFFMVASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWA
                     GVVFVALSALLAWSIVPADGILRHPETGLVSGSPFLKSIVVFIFLLFALPGIVYGRVT
                     RSLRGEQEVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGATFLKEVG
                     LGGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDS
                     VTNIITPMMSYFGLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVLG
                     LPVGPGAPTFYPAP"
     gene            13176..13388
                     /locus_tag="ACFOCN_000784"
     CDS             13176..13388
                     /locus_tag="ACFOCN_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969965.1"
                     /translation="MKNEIQKIMDKYNPWHEDDFESYEDIAKDVSLMTDKTFIEHYLL
                     EVYSEENGHFDQENIHAMIGEIKNAI"
     gene            complement(13481..14111)
                     /gene="mtrR"
                     /locus_tag="ACFOCN_000785"
                     /pseudo
     CDS             complement(13481..14111)
                     /gene="mtrR"
                     /locus_tag="ACFOCN_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503796.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     repressor MtrR"
BASE COUNT         3561 a         3392 c         3798 g         3549 t
ORIGIN      
        1 cactgtaaaa acggagaagg acagaggacg gcagtaaggt ttgccgtcct ctttttcaag
       61 ttgcggtgga atgccgcttg aaggtgtggt ttaaacgttt cggcttgtaa tcagacgcgg
      121 gcgttgtcca gccgctctct gaagttttcc aaatttacgc ctgccgcttg ggcgcggcgg
      181 atgatttcgt caaccggcat accttctgcc gcccggcgga agccccacag gagggagcag
      241 cgcgtaccgg tccggcaata ggcaaggacg ggatattcgg cttgtccgat gagttggcgg
      301 aaggtttcga catcgtgttt ttggatgtcg cgtgcggtaa cgggttggtg atggaatcca
      361 gtaacgcctg cttgttccag ccactgtttg atttgggcga agtcgggttg cgattcttct
      421 tcgcggtcgg ggcggttgca gatgacggtt ttgatgccca gttgcgcgat ttgttccgca
      481 tcggctttgg tcagttgcgg agaaatatag aggtgttcgt caagtttcag aatggccatt
      541 ttgtttcctt tactttgcgg ttgtttttca gacggcattt tgtgtgcaat gccgtctgaa
      601 agtttaaccg aacaaccagt tgtccaacag gttccggtct gtgatatgta ggatggcagt
      661 atccgctgcc gctgcctgaa ccgtcaagac ggtttgacgc aatatgccgg cacggaagaa
      721 gtggatattg atttttgcat tgacgtggta tcgggcccat tgtgcggtaa agtcggtgca
      781 ggcataaccg tctaaagcaa tgattttgtc ttgcgggcac agtgccgcag attccgcgct
      841 gccgccgttg aagacatggg tcaggacgat gtggtcggtg ttttgtttga aacgtgcgcc
      901 aaaatcgcct gccgacggga cggggcagat gtgttctgcg tatccgccgc cgtgttgtcg
      961 gggaagcggc aggaaggtca gtcccacgcc tgcggttgcc aggcattcgg caagcggcaa
     1021 atcttcggta ctgtataacg ctttttggaa aaaatcttcc aaatccaagc cggtaatttc
     1081 ctgacagcgg atttgccagt gtttttccgg aatacccgag tgtgtgtccc tccactcccg
     1141 atagagtttg tccattatcg tatcgagaga atgtctgccg ttgcttcggt tgcgtattat
     1201 cagatcaagg cacaatgcgg caagcgcgcc tttctggtag tagctgacga tggcgttggg
     1261 gctgttttca tccggtttgt aaaatttgtt ccacgcggta aaactcgatt ccgccaaggt
     1321 ctgcctcaaa cggccgcggg tttgttgtat gcgcgtaatg ccttgtgcca gcaggtttaa
     1381 ataagattcg ggcgagatgg tgcggctgcg tgccaaaaac aaatcgtcgt aataggatgt
     1441 aatgccttcg aatgcccata gttgttcggt atagttttct ttgtcgaggt cataaggggc
     1501 gaacgcggca ggtttgatgg atttgacgtt ccacgcgtga aaatattcat gggagaaaag
     1561 tccgagcaat gtggtgtagg catcgtcggc atcggtcata ccgaacggcg gaaggctgtg
     1621 gcggtcggcg agcagggcgg tgctgtcggc gtgttccaaa ccgccgtaaa tatggtcgcc
     1681 gacgtggagc aggaacaaat aattttgaaa cggggcaggg gaggaaaaca ccgccagttc
     1741 tgtttcgcag atttttttga tatccgaaac cagcctgttg cggtcgaaat cgggatagat
     1801 gccgcttaag gcaattgtgt gcggaatgcc tgccgcctca aaatctaaaa attcaatcaa
     1861 gcccatctcg acaggtcggt caatcaattc ggcataagat gccgcctgaa agacaaacct
     1921 ccctgtttcc ggcagcgttg tggcaatacg ccattcggac ggaatacccg tcaattccaa
     1981 gcggtgcggc agcgtttccg ttccttcgac tttcaaaaac aggcacgatc cgtcaaaaaa
     2041 accgcgttct gtcgtcagga aagaacctcg aaccgacaaa tcgaatgcat atacggtgta
     2101 gcggatttgc cactcgccgc gtacggcggc agcgtgccag cggttttttg caatttgttc
     2161 gagcggcatg gacgtgccgt tacaggatgc atggatagaa gtgatgtggc gggaaaaatc
     2221 ccgaatcaga tagctgcccg gaacccagtt tggcaggctt atttctatag gaagatcatc
     2281 atcttgtgtg aatgtcagca ggatgtgcca ctcgtggtcg agaggggacg gggttatttt
     2341 ataatgaatc ataactatca aatatatcgt taaacgggat ggattaaata cctttaaaat
     2401 gcagcttaac ctacatcaat aaagtgccac aaaaagggaa aattggaaac aaaagcaatg
     2461 gcggtcgggt tgtaatttat tataacaata tgatttatat gtaataaaaa acagattaag
     2521 caaagggctc gtcggcggcg cgaatgtaat tccgcttggc gtaataaggc agatatgtta
     2581 aatttagaaa aaattacgct tgcccggatt gcaccttaaa caggctgcgg aagcggcagg
     2641 ataaaaatct ttattcccat aaattcatgg agactctcat ggacacacaa acttacaact
     2701 acaaagtggt gcgccagttc gccatcatga ctgtagtttg ggggattgtg ggtatgttgg
     2761 tcggcgttat cgtcgccgcc cagctttttg ctcctgccct cgacttgtct aatatcggac
     2821 cttggttcca cttcggccgc ctgcgtccgc tgcacaccaa tgcggttatt ttcgcatttg
     2881 gcggttgcgg cctgatcggc acatcatact acgttgtcca acgtacttgt aatacccgtc
     2941 ttttcggcgg ttggctgccg gcatttacct tttggggctg gcaggcggta atcgttgccg
     3001 ccgtcgtcag cttccctatg ggttggaccc aaggtaagga atatgccgaa ctggaatggc
     3061 cgatcgatat tctgattact ttggtttggg tggcttacgc catcgtattc ttcggtacga
     3121 ttgccaaacg taagattaaa catatttacg ttgccaactg gttctacggc ggctttattt
     3181 tggcggtcgc acttttacac atcgtcaaca atatcagcat cccggcaggg ttgatgaagt
     3241 cataccccgt ctattccggt gcgattgatg ctatggttca atggtggtac gggcataacg
     3301 ccgtgggctt cttcctgact gccggcttct tgggtatgat gtactatttc gtacccaaac
     3361 aagcagcccg ccccgtttac tcctaccgcc tgtccgtcgt tcacttctgg gcgttgattt
     3421 ttacctatat gtgggcgggt ccgcaccatc ttcactacac tgcgctgcct gactggacgc
     3481 aatctttggg tatggttctg tctttgattc tgttcgcacc ctcttggggt ggtatgatta
     3541 acggcatcat gaccttgtcc ggcgcgtggg acaaactgcg tacagacccg attcttaaat
     3601 tcctgattgt atccttgtcc ttctacggta tgtctacctt tgaaggcccg atgatgtcga
     3661 ttaaaacggt caatgcattg agccactata cggactggac cgtcgcgcac gttcatgcgg
     3721 gtgcgttggg ctgggtaggc tttgtaacca tcggttccgt ctattacatg attccccgtc
     3781 tgttcggcaa agaacagatg cacagcacca agctggtaga agcgcatttt tggattgcga
     3841 ccatcggcgt ggttctgtat atcgctgcca tgtggattgc cggtgtgatg cagggtttga
     3901 tgtggagttc tttgaacgat gacggtacgc tgacctactc gtttgtcgaa tccgtaaaac
     3961 gcaccatgcc ttactacatg atccgttttg caggtggttt attgtatctg agtggtatgt
     4021 gcattatggc gtacaacgtg taccgcacag ccatcggtgg taaagcagtc gatgccgaaa
     4081 tccctgcggt ttcccaaaca cagcaccact aaaatactaa gaaagatagg ctaccaaaat
     4141 gaaattacaa caattggctg aagaaaaaat cggcgttctg attgtgttca cgctgcttgt
     4201 agtcagtgtc ggtctgttga ttgaagttgt gcccttggcc tttaccaagg cggcaacaca
     4261 gccggcgccg ggcgtgaagc cttacaatgc cctgcaggtt gccggacgcg atatttacat
     4321 ccgtgagggc tgttacaact gccactcgca aatgattcgt ccgttccgtg cggaaaccga
     4381 gcgttacggt cattactctg ttgccggaga gtcggtttac gaccatcctt tccaatgggg
     4441 ttccaaacgt accggtcctg atttggcacg tgtgggcggt cgctattccg acgaatggca
     4501 ccgtatccac ctgctgaatc cccgtgatgt cgtgcctgag tccaatatgc cggcatttcc
     4561 gtggcttgca cgcaataaag tcgatgtcga tgcaaccgtt gccaacatga aggctttgcg
     4621 taaagtaggt actccttaca gtgatgagga aattgcgaaa gcgcctgagg ctttggcaaa
     4681 caaatccgag ctggatgctg tagtcgccta tctgcaagga ttgggtctgg ctttgaaaaa
     4741 cgtaaggtaa catcatggat attaacggta ttcgtgctct cttcacggta tggatcttta
     4801 tctgtttcct gttggtactc tatatcgtct tcaacaggcg gaataagaaa aactacgata
     4861 atgccgcaaa cagcattttt gatgaaaacc aagatgcgca agataagaaa agcgaaaacc
     4921 gttaatattg tgataacgga gcaaaacaat gaacacaaca tcccaattta ccagtaattt
     4981 ctggaatata tatattgcag ttattgtctt actgagcttt atcgctttgg cttggctgct
     5041 gctgtctcaa aatgttgtca aacgtccgaa gaagggcgaa gaagtacaaa ctacgggtca
     5101 tgagtgggac ggcattgccg aatacgacaa tccgctgccc cgctggtggt tttggctgtg
     5161 tgttttgacg tggctgttcg gtatcggtta tctggttatg tatccgggtg tcggcgacta
     5221 caaaggtctg ctgaaatgga ccagccataa ccaatatgaa aaagaggtca aaaaagccga
     5281 tgagcaatac ggcaaactgt atgccaagtt tgcggatatg ccgattgaaa aagtggcaaa
     5341 agaccctcaa gccaagcaaa tcgcccaaaa cctgtttaac acttattgta tccagtgcca
     5401 cggctctgat gctaaaggct ctaaaggttt tccgaatctg accgatagcg attggttgtg
     5461 gggcggtgat cccgataaaa tccacgagac catcgaaaaa ggccgtgttg cgactatgcc
     5521 tgcctggggc cctgctttgg gcgaagaagg cgtgaaagac gttgcccatt atgtgatgtc
     5581 cctttcaaaa cccgaaggtc agtatgatga ggaacgtgcc gcgcgcggac aagccttgtt
     5641 cagcggtccg cctgccaact gtttcacttg ccacggcgat aagggacaag gtatccaagg
     5701 tttgggtccg aacctgactg atgacgtgtg gttgtggggc ggtacgcaaa aatccattat
     5761 cgaaaccatt accaacggtc gcagcagcca aatgcccgct tggggacatt tcttggataa
     5821 agacaaactg catattatga ctgcttatgt atggggtctt tccgataaag acggtaaagc
     5881 tccggtgaaa aaagccgagc ctgcaccgac tcccgcaccg gcggcagaac ccgcagcctc
     5941 tgctcctgca gaagcagcac aagccgcgtc cgaagccaaa cctgccgcag cagaacctaa
     6001 agccgaggaa aaagccgcac ctgctgccaa agcggacggc aaataggttt atgaaaccgt
     6061 ttgtgccgcc tgccatggca atgcggttcc gggtattccc catgtaggca tcaaagccga
     6121 ttgggccgac cgcatcaaaa aaggcaagga cacgttcgtt gcacaaacac gcgatcgaag
     6181 gtttcaatac gatgcccgca aaaggcggtc gcggcgattt gagcgatgat gaagtgaaag
     6241 ctgcggttga ctatatggtc aaccagtcag gcggcaaatt ctaacttgac tgagtttccg
     6301 atattatcgg ttatgaaaat ccagattcag tattgaatct ggattttttg ttttaacggg
     6361 catccggttt taaacgcaga ctgcctattt gttgtaatga attttgactt tagtcataaa
     6421 gaattagtct ttattgttta taatcgcgca tcatcacgat agccctattt tcaaaaggac
     6481 gattaatgga tacacaaatc aaaactgaag ccgacaatca gagcaaccgg cgttatctga
     6541 ccgtttggcg gtggcatttt tatgccggtc tgctggttat gccttttctt accctgcttg
     6601 ccgttacggg tttgggtatg ctgctgtttg ccaatattac cggtaaggag ggcgagcgga
     6661 ttcatgttgt gccgcaggca acggtacaac ctctgtctgt tcaggcggaa gcggcacgca
     6721 gtgccgttaa tccggaaact tcgtccgtcg ttcagtatat tgcgccgcgt gccgatgata
     6781 tggttgccgt gttccgtgtc aacaatgagg gcaaggcaac gatggtcgcg gtcgatcctt
     6841 atacggcaaa agtggtcagt accatgccgc gcaatcaggg ttggtattac gcgatggatg
     6901 aaatccacag cgatatgatg ctcggttcga caggtgatta tcttttggaa acggctgcat
     6961 cgctgacgat tatcatgata atcagcggtt tgtacctttg gtgggtgaaa cggcgcggca
     7021 tcaaggcgat gctgctgccg ccaaaaggca gggcgcgttc ttggtggcgg aatctgcacg
     7081 gcgcgtttgg aacttgggtg tcgttgattt tactgttgtt ctgcctgtcg ggtattgctt
     7141 gggcaggtat ttggggcggc aagttcgtgc aggcttggag tcagttcccg gccggcaaat
     7201 ggggtgtcga accgaaccct gtttcagtcg tgccgaccca cggcgaggta ttgaatgacg
     7261 gcaaggttaa ggaagtgccg tgggttttgg agcttacgcc tatgcctgtt tcagggacga
     7321 ctgtgggcaa agacggtatt aaccctgacg agccgatgac attggaaacc gtcgaccgtt
     7381 ttgcgcggga aatcggtttc aaagggcgtt atcagttgaa tttgcccaaa ggcgaggacg
     7441 gagtgtggac tttgtcccaa gactctatga gttacgatat gattagtccg tttgccgacc
     7501 gcacggtgca tatcgaccag tacagcggca aaatccttgc cgacatccgc tttgacgatt
     7561 acaacccgtt cggcaaattt atggcggcaa gcattgcgct gcatatgggt actttgggct
     7621 ggtggagcgt gttggcgaac gttttgttct gccttgccgt catttttatc ggtatcagcg
     7681 gctgcgtgat gtggtggaaa cgccgtccga ccggagcggt gggcatcgtt ccgccggcgc
     7741 agaaagtcaa gctgccggtt tggtggatga tggcattgcc gctattggca atcgcactgc
     7801 tcttcccgac cgcactgctt gccattgccg tgatttggct gttggatacc ttgctgctgt
     7861 cgcggattcc tgttttgagg agatggttta aatgacccga tgccgtctga agcgttcaga
     7921 cggcattttg tttgaaggcg ggcgggggaa aggctatata atcccgaata cttgaccaca
     7981 gcttctgttt gaaatcatgt tttatctgta tcaatccaac cgtcttgaaa cgctggcggc
     8041 actgtttgcc cgcattcaaa aagtcaaacc gctgaaatcg gttttacagc ccgaacagat
     8101 tattgtgcag agtcagggga tgcgccgcta cctcaatacc tgcctcgccc gcgatttggg
     8161 cgtggcggcg aatttgtcgt tcagcctgcc cgccggtctg acgtggaagc tgatgaaaaa
     8221 actgattccc ggtattccgg aactcagccc gtttgcgcct gaagtgatgc gctggcggct
     8281 gttggatttg ttccgcagcg aggcatttcg gaatacggca gaatttgaag atgtgaggaa
     8341 tgtgctgcaa gactatctag gcagcggcga atcggcagat tatcagcttg cgggacagct
     8401 tgcggacata ttcgaccaat accttgtcta tcgtccgcag tggatagacg cgtggcagca
     8461 gggcaggata ctcagtttgg gcgacgatga aatctggcag tccaaactgt ggcgttatct
     8521 tgatgacggc aggcagagcg cgccgcaccg tgttgcgttg tgggaaaagc tgttggaatc
     8581 tttgagcagt gataagctgc ccgagcgtta tttcgtgttc ggcatttcca cgatggcgcc
     8641 gatgtatttg cagcttttgc acaagctgtc cgaacattgc gatgtgttcg tgtttgcact
     8701 caatccgagt gggatgtatt ggggcaacgt catcgaagcg gcgcaaatcc tcaaaggcgg
     8761 cggcgatccc gatttaactc aggcagggca tccgctgctc gcctcattgg gcaagcaggg
     8821 gcgcgacttt ttcgactttt tgaacgaaat ggaaatagaa ggagaaacgc cggtatttga
     8881 agaaggcggg cgcgatacgc ttttgcacgc cctgcaaacc gatattcaaa acctgaaaat
     8941 gccgtctgaa aatgtgggaa gcgtcggtac ggatgacggt tcgatacgta tcgtctccgc
     9001 gcacagccct ttgcgcgaat tgcagatact caaagacaag ctgttgaaaa ttctgcatga
     9061 acatcccgat tggcagccgc atgatatcgc cgtattaacc ccgaatatcg aatcctatac
     9121 gccttttatc gaggccgtgt tcggacaggc gcagcccggt gcgcaggcat tgccgtattc
     9181 cgtttcggac gtgaaaataa gccgccgaca accgctgttt catgctttgt catgcctgtt
     9241 cgacttgttg gaaagccgat ttgaagtcga taaagtgctt gtgcttttag aaaccgcacc
     9301 cgtgttgcgc cgtttcggac tgactgagga cgatttgccg cttttgcacg acatggttgc
     9361 cgatttgaac gtccgctggg gtttggacgg agaaatgcgc ggcggcacgg atcagctgtt
     9421 tacctggaag caggcggtag aacgcatgat attgggctgg atgctgcccg aaggcggcaa
     9481 tccgatgtgg caggatgtca gcgcgtggta tgccgacgtg aatcaaaccg ccatgttcgg
     9541 acgttttgcc gccttcctcg aaaccctgtc ggatattgta cggatatggc ggcaacctgc
     9601 gacggttgat gaatgggtag gacgttgccg aggtttgctt gaaacattgt tccaagctga
     9661 agccgatgac caaaagtcag tccaaaacct cgaaaacgaa tgggtcaaat ggcaggcgga
     9721 aacagaattg gcgcaatttt ccggacagtt gccgcaacaa accgtcatcc gccatatccg
     9781 acgtttcctc gacagcgaaa gcgaggcagg ctttttacgc ggcggcatca ccttttgcag
     9841 tatggtgccg atgcggagcc tgccgttcaa agtcatctgc ctgttgggtt tgaacgacgg
     9901 agattttccc cgcaatacca aagccgccgt attcgacctg attgccaaac atcccgccaa
     9961 aggcgaccga gcccgtcgcg atgacgaccg ctacctgttc cttgaagctc tcatcagcgc
    10021 gcgtgaaatc ctgtatttgt cctacatcgg gcgcgatatc cgcaaagacg aagagcttgc
    10081 cccgtcttcg ctgttgggcg aactcatcga cacagttgcc gccatgaccg gcacaaacag
    10141 ccgccaactt gcacaaaatt ggatagaaca gcatccgctg caagccttct cgcgccgata
    10201 tttccaagaa ggcggacgtt cagacggcat attcggcacg cgtaccgact acgccgccgc
    10261 gctcggacaa acgcccgaac cgccacaacc ctttttcgac caatccgtag aaaacgccga
    10321 acccgttgcc gaaatcggac aggacgaatt tatccgcttc tggcgcaacc ccgtcaaagt
    10381 atggcttcag cagcagcttg cgtggagcga accccatatc ggcgaagcct gggagcctgc
    10441 cgaacccttc gaaccgcaac atgccgagca aatcgccgaa atctatatcg aggcgcgccg
    10501 cgaaggacaa gatttttctc aaaccgccgc ccgcatcggg gcggaaagcc tcctgccgtc
    10561 gggagagttg ggcagacttt ggcagcagaa cttccaaact gctgccaaac aaatcgacac
    10621 ggcggtttta aacagtccca aacttcctcc gctgccctac gccataccgt cggacgggca
    10681 aatcctgaaa ggcagtttga gcaatttata ccaatgcgga caagtgtttt acgcctatgg
    10741 caaacccaat gcgccgcaac gtgtggcttt tttgttggaa cacctgatat tttgcgccgt
    10801 tatgccgtct gaaaccgaaa cgcggcaaac ctttatcgtc caatccggag aaaccgaaat
    10861 attggtggaa atcgcgcaag acagggcatt gcagctattg tcggaatgga tggcgttttt
    10921 caatatcggg caaaaccgcc cgctgccgtt ttttgccaaa acctcgcttg ccgccgccga
    10981 agcgtttgcc caaaaacaag attgggaagc cgccctgaaa aaagcccaaa ccgcctacca
    11041 cggcaacaaa gtcagcaaag ggcagaaaga ctataccgaa gtcgccctcg tgttcggcaa
    11101 cgcaagccaa aacccgctcg aacagcccct gtttgaaaac ctcgcccgcc tgcttgccga
    11161 cacgcttgcc gcagcggaaa aaaaggaaga gaccggagaa gcctgacggg atagaaaggc
    11221 aaatgccgtc tgaaagcgtt taagcatttc agacggcatt ttgtttatcg tgtttaaggt
    11281 gcgggataga atgtgggcgc gccgggaccg acgggcaggc ccaaaacaaa tacccaaatg
    11341 cagaataagg caatccatgc aattaagaag aaagcggaat acggcaacat catagaaatc
    11401 agcgtaccca cgcccgcatc ttttttgtat ttgatcaccg tcgccataat cagcccgaaa
    11461 taactcatca tcggcgtaat aatattggta acggaatcac cgatgcggta agcggcttga
    11521 atgacttcgg gcgcgtagcc ggccaacatc agcataggga cgaaaatcgg cgcagttacc
    11581 gcccattgcg cggaggcgga gcctatcatc agattgataa aagcacaaat taaaataaaa
    11641 ccgataaaca acacgctgcc gcccaagccg acttctttta agaacgtcgc ccctttaacg
    11701 gcaatatatt gcccaatatt cgtccaatta aaaaatgcga caaactgtgc ggcaaaaaag
    11761 atgatgacca aataaagccc cagagtactc atcgattcgg ccatcgcatt aacgacttcc
    11821 tgttcgccgc gcaaacttcg ggttacccgg ccataaacaa tgcccggcag tgcaaacaac
    11881 aagaaaataa aaacaacaat tgattttaaa aacggcgaac cggaaaccaa tcctgtttca
    11941 ggatgacgca aaataccgtc ggcagggacg atgctccaag ccaatagggc ggataaggca
    12001 acaaacacca cgccagccca aattaatcct ttatattcca aaggcgtgat ttcattggaa
    12061 tgtcgaatgt ctttttcttc ttgtgacaaa tctgattgat aagggcccaa ttgcggttcg
    12121 acgatttttt cagtaacaaa ataaccaatc aaagcaatca caaacgtact ggctaccata
    12181 aaaaaccagt tggcttcagg gcctacgacg tagtcgggat ggatgatttg cgccgcctgt
    12241 tgggtgatgc ctgccaagag cggatcgatt gtgcctaaga acagattggc cgaataaccg
    12301 cccgaaacgc cggcgaaagc cgcagccaga ccggcaagcg gatggcggcc gagggaatga
    12361 aagatgatgg cggacaaagg gattaggacg acatagccca attcagaagc ggtattagat
    12421 aaaatccctg taaaaacaac cataaaagta gtgagtttgc gtggagattt tgtgagcaat
    12481 aagcgcatta atgcggaaat caagcccgat ttttccgcaa tccccacgcc caataaagaa
    12541 accaacaccg ttcccaacgg cgcgaaaccg gtgaaatttt taacggtatg cgtcaggatt
    12601 ttgatcaaac cgtcagcatc gagcaggctg acaacgtgaa tcaaaccgtc atcggcacgt
    12661 cctttcgcac caacagggcg cggatcgggg acggatagtc cgaaatacgc accggcggca
    12721 gaggcaatca gcaataacac aatgaaaata ataaaaagcg taaccgggtg cggcaacata
    12781 ttgcccagcc attcgactgt gcgtaaaaat cgtccgtccc gttgcgtatc ggtttgactc
    12841 atctgcttct ccttaaaaaa aatatattga gtgcattaaa tttttgaatg taacatgaag
    12901 tgttttgtaa gcaaactaaa ataatcgtat atgtatataa ccgtaataga ttaaaacaga
    12961 aaatgcccac atcgttattc tcataaaggc ggtaatccga aaacttgacg ttaaagcctt
    13021 atcaggaatg actggaactc aaaaaaacgg attcccgcct gcgcgggaat gacgggattt
    13081 tcggtttttg tttgcaagaa tgccggagaa gaacgcagtt tacattttga atggtattgt
    13141 tattaattgt aaataaatat tggaaggtaa atgatatgaa aaatgaaatt caaaaaatca
    13201 tggacaaata taatccatgg catgaagatg attttgagtc gtatgaagac attgccaaag
    13261 atgtatcgct gatgacagat aaaacgttca ttgaacatta tttgttagaa gtttattcag
    13321 aagaaaacgg acattttgac caagagaata tccatgcgat gataggggaa attaaaaatg
    13381 caatttagtg aatatgtatt tttagaagaa ggctttgtgt tattttgatg ccgtctgaaa
    13441 gggtttgtcc gtttcagacg gcattgttac aaagcttgga ttatttccgg cgcaggcagg
    13501 gatggttttc caagttgtcc atcattatcc cgatgatgcg cggggcggtt ttgcccaaat
    13561 cgaaattttc tccggaagaa agccaacgcc aaatcagccc gtccaaggtt gatttgatga
    13621 agatgaccgc cgtttccttg tccaaatcgt cagccaaatc ctgattttcc accgcttcgg
    13681 tcaaaacggc ggtaattttc tcgcgccaga ttgcctgatg cttgcgggca atggcgataa
    13741 cggcggcgtt ttgctccgtg tgttcgcatt ttaaaaacag gatgttgtgg aatttgtagt
    13801 agatgtcgtt gctttgcagc cgctcgaaaa agtgcagcag cgtgtggcgg aataccgccc
    13861 aagaccctcc ttcggcatct tcggcatctt gcgcgatgca gttttcgatg tcgtcgcaga
    13921 tacgttggaa cagcgcgtcg aacaagtctt ccttattttt gaaatgccaa tagagcgcgc
    13981 cgcgcgttac gccggcggct tgggcgattt cgttgagcga ggtgcgcgca atccctttgg
    14041 taaaaggttt ccaaggcggc aagcatcagg tgttctttgg ttttcaaggc ttcggttttg
    14101 gtttttctca taatggcgtt ttcgtttcgg gtcggtttga tgagggcgga ttataaaaaa
    14161 gactttgtaa ccatgcaatc gtgtatgtat aatgaaaccc atgaaattga gactacatct
    14221 caactttgaa aacaggcata acctgcttcg caacccgttt gaacatcggg ttggcgaagc
    14281 aggcggtttt tatatcctga
//
LOCUS       DAXIFD010000037        14079 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.037, whole genome shotgun sequence.
ACCESSION   DAXIFD010000037 DAXIFD010000000
VERSION     DAXIFD010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14079
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.037"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(53..361)
                     /locus_tag="ACFOCN_000786"
     CDS             complement(53..361)
                     /locus_tag="ACFOCN_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969966.1"
                     /translation="MTNNVDLKVPAKRYFTLDELCGLLQISPYGFAQWQHDYGVVVGY
                     GGERYTRLDVVKLLKLQSTFAPYAEGAESGSDGNRPVTLQEIGDGLKELLADLDKELC
                     "
     gene            complement(345..647)
                     /locus_tag="ACFOCN_000787"
     CDS             complement(345..647)
                     /locus_tag="ACFOCN_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HFC6969967.1"
                     /translation="MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEE
                     IKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR"
     gene            complement(721..3084)
                     /gene="pheT"
                     /locus_tag="ACFOCN_000788"
     CDS             complement(721..3084)
                     /gene="pheT"
                     /locus_tag="ACFOCN_000788"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HFC6969968.1"
                     /translation="MQFSYSWLKTQADTELSADKLEHLLTMSGLEVEEAETAAPAFAG
                     VVVAEVKSVEKHPDADRLNVTRVDAGTGELVQIVCGAPNVKAGIKVPCSLPGAVLPGN
                     FKIKPTKMRGVPSNGMLCSTNELGLPDDGVNGLHILPEDAPVGINIREYLDLDDTLFT
                     LKITPNRADCLSVKGIAREVSALTGCAFRQPEIHTAPITGSRKQPVQINAPADCGRFI
                     SRVIENVNAKAATPDWMKQRLERSGIRSISVLVDIGNYVMLEIGQPMHVFDADKLSGS
                     LHIRRAREGETLECLNEKTVSLSENTLVVADEKGALSLAGLMGGAASAVSDGTQNIVL
                     EAAWFAPEIIAGKSRQYGFGSDSSFRFERGVDYRLQADAIERATELVLQICGGAAGEM
                     VEAQGELPEAKQVGLRLDRLKTVLGVDIPAEQVETILQHLGLQPEKTAEGFRVTAPSF
                     RFDIEIEADLIEEIGRVYGYENIPDDYTSGRLKMLELPETRRSRFAVYNEMAARGYRE
                     VVSYAFVDEQWEQDFAANADPIRLQNPLAAQYAVMRSTLIGGLVEILQNNLNRKQNRV
                     RVFEIARVFGKGSDGRFVQNERIGGLWYGAAMPEQWGGKTRNADFYDIKADVENLLKN
                     KAVEFVKTGYPALHPGRAANIVSDGKVIGFVGELHPKWLQKYDLPQAPLVFEIDMAAV
                     LECGKTRYRAVSKFQPVRRDLAFVMPEAMSHDDLLLVLKGAANKLVQEISVFDVYRGM
                     GLPEGMKSVAVKVILQDMENTLTDEAVEPLIGKLIGAATAAGARLRS"
     gene            complement(3139..4164)
                     /locus_tag="ACFOCN_000789"
     CDS             complement(3139..4164)
                     /locus_tag="ACFOCN_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003683077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6969969.1"
                     /translation="MVSAIDSLKKNVNYNYVNSSNTHTIQIVHVEKPEGPIKIKRGDT
                     ETSISKQAIWRLADALSTGEPVNVDRVFGASYNFRSALEALLAHTPEIYWCKLQRIQP
                     GLNKSEVVEGHKHIIWLPDRPHEKGVMKEYETDVVISEIPSNNVVYDALSLPSTHSEI
                     DIDVKRRHVQIQIALSAIGFQLGFRTWIARNDQGISYGDKKIADLDGIVQKIESEKLI
                     SSFDGAVQAAMNIDCIWFRNGKLMPAVMEVEHSTGVRSGLARMKQLKDLLPPYANTRW
                     VIVAPDEDRDKVFKEANVPMFKNLDTQYFPYSAVEELYSLCIRRKLTNKAVNEEFLDC
                     FMEKCVM"
     gene            complement(4166..5260)
                     /locus_tag="ACFOCN_000790"
     CDS             complement(4166..5260)
                     /locus_tag="ACFOCN_000790"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003683097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6969970.1"
                     /translation="MIFSFFSGAGFLDLGFELSGFDIAFVNEVHPPFLEAYKYSRSRM
                     DIPKPKYGYFKGSIDECLYAEKAKDLAGWVKKEKQNGIIVGFIGGPPCPDFSIAGKNK
                     GKDGENGKLSQSYVDLICKNQPDFFVFENVKGLYRTAKHREFFNALKRQLSDFGYVCT
                     EKLINAIEYGVPQDRERIILVGFLSQHVDALQKFDWDAHISFPDALEKDWPTTEEVGR
                     VVSQPANIYPELTVQYWFNRNGVDTHPNASKHFQPRAGLEKFQTISEGDDKKKSYKRL
                     HRWRYSPTAAYGNNEVHIHPYLPRRISAAEALAIQSLPKEFELPDNMTLSNMFKTIGN
                     GVPFLAAKGIAMTLKSYLENHYERTKTDGC"
     gene            complement(5331..5777)
                     /locus_tag="ACFOCN_000791"
     CDS             complement(5331..5777)
                     /locus_tag="ACFOCN_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HFC6969971.1"
                     /translation="MDRLTPEQRKKCMQSNKSKGTKPELALAKAMWALGLRYRKNSGS
                     IFGKPDFSFKKYKVAVFVDGEFWHGKDWEQRKAEIKGNREFWIAKIERNIRRDMEVTG
                     RLKVEGWAVLRFWSNDVVKNTTCCAEKVRQAVRDKQGLSKFQTREK"
     gene            complement(6101..7093)
                     /gene="pheS"
                     /locus_tag="ACFOCN_000792"
     CDS             complement(6101..7093)
                     /gene="pheS"
                     /locus_tag="ACFOCN_000792"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HFC6969972.1"
                     /translation="MENVNRIVAEGIAAVEAAQDFNALEQIKARYLGKTGELTGLLKT
                     LGQMSPEERKTIGAHINECKNRFQTAFNAKRDALNEAKLQARLAAEALDITLPGRAQE
                     GGSLHPVTLTLQRVVELFHGMGFEVADGPEIEDDFHNFQALNIPANHPARAMQDTFYV
                     ENGDVLRTHTSPIQIRYMLDKKEPPIRIIAPGRVYRVDSDATHSPMFHQAEGLWVEEG
                     VTFADLKAVFTDFIRRFFERDDLQVRFRPSFFPFTEPSGEIDIMGENGKWLEVGGCGM
                     VHPNVLRNVNIDPEKYTGFAFGIGLDRFAMLRYNVNDLRLFFDNDLNFLKQFAK"
     gene            complement(7439..7798)
                     /gene="rplT"
                     /locus_tag="ACFOCN_000793"
     CDS             complement(7439..7798)
                     /gene="rplT"
                     /locus_tag="ACFOCN_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000124858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HFC6969973.1"
                     /translation="MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQ
                     YAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFD
                     KAAFAQLVEKAKSALAA"
     gene            complement(7811..8008)
                     /gene="rpmI"
                     /locus_tag="ACFOCN_000794"
     CDS             complement(7811..8008)
                     /gene="rpmI"
                     /locus_tag="ACFOCN_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HFC6969974.1"
                     /translation="MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQL
                     RGTSMVNDRDLASVAKMLPYA"
     gene            complement(8155..8676)
                     /gene="infC"
                     /locus_tag="ACFOCN_000795"
     CDS             complement(8155..8676)
                     /gene="infC"
                     /locus_tag="ACFOCN_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HFC6969975.1"
                     /translation="MIAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQ
                     DVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQVQIKEIKFRPGTDEGDY
                     QIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKME
                     GRQMVMMIAPKKK"
     gene            complement(8694..10607)
                     /gene="thrS"
                     /locus_tag="ACFOCN_000796"
     CDS             complement(8694..10607)
                     /gene="thrS"
                     /locus_tag="ACFOCN_000796"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HFC6969976.1"
                     /translation="MLNITLPDGSVRQYESPVTVAQIAASIGVGLARAAVAGRVNGKL
                     VDACDPIVENSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGF
                     YYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQERGEEYKLRLI
                     DDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAGAYWRGDSNNEMLQRIY
                     GTAWATKDELKAYIQRIEEAEKRDHRKLGKQLDLFHLQDEAPGMVFWHPKGWALWQVI
                     EQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKDNMFVTSSEKREYAVKPMNCP
                     GHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQI
                     VSEARAFNELLVRIYKQFGFHDVAVKLSLRPEQRAGSDEVWDKAEQGLRDALTACGVE
                     WEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLDAEYVTENNDRARPVM
                     LHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNITENQADYCREVAAKLQAAGF
                     RAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRKAEDLGSLDLDDFIA
                     QLQQEITDALVNH"
     gene            complement(10660..10736)
                     /locus_tag="ACFOCN_000797"
     tRNA            complement(10660..10736)
                     /locus_tag="ACFOCN_000797"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10700..10702),aa:Val,seq:gac)
     gene            10915..12030
                     /gene="tgt"
                     /locus_tag="ACFOCN_000798"
     CDS             10915..12030
                     /gene="tgt"
                     /locus_tag="ACFOCN_000798"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HFC6969977.1"
                     /translation="MLKFTLHKKDGYARRGTLELNHGKIETPVFMPVGTYGSVKAMNP
                     QNLHDIKAQIILGNTYHLWLRPGLEVVEQFGGLHGFIGWDKPILTDSGGFQVFSLSDM
                     RKLTEEGCTFKSPINGDKLFLSPEISMKIQTVLNSDIAMQLDECTPGEATREQAKKSL
                     QMSLRWAERSKKAFEDLKNPNALFGIVQGAMYEDLREESLRGLEQFDFPGLAVGGLSV
                     GEPKPEMYRMLRAVGPILPEHKPHYLMGVGTPEDLVYGVAHGIDMFDCVMPTRNARNG
                     WLFTRFGDLKIKNAKHKLDKRPIDESCTCYACQNFSRAYLHHLHRTGEILGAQLNTIH
                     NLHFYQVIMAEMREAVEQGKFADWQARFHENRARGTD"
     gene            12040..13122
                     /gene="hemH"
                     /locus_tag="ACFOCN_000799"
     CDS             12040..13122
                     /gene="hemH"
                     /locus_tag="ACFOCN_000799"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HFC6969978.1"
                     /translation="MPSEAASDGILPLYPTRTIFQKPIMLPFFPEPSLSYTQQNRTAV
                     LLLNLGTPDAPTAQAVRPYLKSFLTDRRVVELPKWLWYPILHGLVLTLRPKKSAHAYE
                     KIWFKEGSPLEVYTARQAAALAKRMPDLIVRHAMTYGNPSVADVLSELKAQGAGRLLV
                     IPMYPQYAASSSGAAVDKVCEQLLLQRNQMSVRTVSRFYDDTGYIDAMKNHILRYWAE
                     HGRGKKLMLSFHGVPQKHHDLGDPYPDECRHTAKLLAEALELTEDQYVVSFQSQFGRA
                     KWVTPSTQDLFGKLPKQGVTELDVFCPGFLADCLETMEEIALMGREQFYEAGGKSYRY
                     IPCLNDNPDWIDALVALAEENLGGWR"
     gene            13314..13715
                     /locus_tag="ACFOCN_000800"
     CDS             13314..13715
                     /locus_tag="ACFOCN_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6969979.1"
                     /translation="MNTTRLPTALVLGCLCAAASAADNSIMTKGQKVYESNCVACHGK
                     KGEGRGTMFPPLYRSDFIMKKPQVLLHSMVKGINGTIKVNGKTYNGFMPATAISDADI
                     AAVATYIMNAFDNGGGSVTEKDVKQAKGKKN"
     gene            complement(13778..14068)
                     /locus_tag="ACFOCN_000801"
     CDS             complement(13778..14068)
                     /locus_tag="ACFOCN_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6969980.1"
                     /translation="MAKYFTETGISVREYFDFFGEFVVLPAARSGDLALAYGLRLEAG
                     EEGLSLAELFDKRSDSQEPVECGRIDIGGFMLTAKEVDGDGNIGSMGLKVPR"
BASE COUNT         3498 a         3800 c         3165 g         3616 t
ORIGIN      
        1 attttttagc gtgtaaaaca aaaccggctg catacctgca accggcctca aatcagcaca
       61 attccttatc caaatccgcc aacagctctt tcagaccgtc tccgatttcc tgaagcgtaa
      121 ccggacggtt gccgtccgaa cccgactccg caccttctgc atacggtgca aacgtgctct
      181 gcaatttcaa cagtttcacc acatccaaac gggtgtagcg ttcgccgccg taaccgacaa
      241 ccacaccata atcatgctgc cattgcgcaa aaccataggg gctgatttgc aacagtccgc
      301 acaactcgtc cagcgtgaaa tagcgttttg cgggaacctt caaatcaacg ttgtttgtca
      361 tagtagtgtt ccaccatgct tttgagtttc tggctggcat ggaaagttac cacgcggcgg
      421 gcggtaatcg gcacttcctc gccggtttta ggattacgac ccgggcgttg cggcttgtcg
      481 cgcaactgga aatttccgaa accggaaatt ttgatttctt cgccgcttgc caaagtgctg
      541 cggatttctt caaaaaagag ttcgacgatt tctttggcat cgtttttggt gacgttgctg
      601 actttgtcta ccaaaatatc ggccagttct gctttagtga gagtcatatg attaccttct
      661 gttgtaacag ttgtggatta ttaccaattt ttatttaaaa ttcaagcgaa tatttatttt
      721 ttaactgcga agccgcgccc ctgccgccgt tgccgcgcca atcagttttc cgataagcgg
      781 ctcgaccgcc tcatccgtca gcgtgttttc catatcctgc aaaatcactt tgaccgccac
      841 gctcttcatc ccttcgggca gtcccatgcc gcgatacacg tcaaacacgc tgatttcctg
      901 taccaacttg tttgccgcgc ctttcaagac aagcagcaaa tcatcatggc tcatagcttc
      961 cggcatcaca aacgccaaat cgcggcgcac cggctggaat ttcgatacgg cccgatagcg
     1021 cgttttcccg cattccaaca cggccgccat atcgatttca aataccagcg gcgcttgcgg
     1081 caggtcgtat ttttgcagcc atttcggatg cagttcgccg acaaagccga tgactttgcc
     1141 gtctgaaacg atattggcgg cgcgtccggg atgcagggcg ggatatccgg ttttaacgaa
     1201 ctcgaccgct ttgtttttca acagattttc cacatctgcc ttgatgtcgt aaaaatccgc
     1261 attgcgcgtt ttcccgcccc attgttcggg cattgccgcg ccgtaccaca agccgccgat
     1321 gcgttcgttt tggacaaacc ggccgtctga acctttgccg aacacgcggg cgatttcaaa
     1381 cacgcgcacg cggttttgtt tgcggttcag gttgttttgc aaaatttcca ccaagccgcc
     1441 gatgagtgtg gaacgcatca cggcatattg cgccgccagc gggttttgca ggcggatggg
     1501 gtcggcgttg gcggcaaaat cttgttccca ctgctcgtca acgaaggcat agctgaccac
     1561 ttcgcggtag ccacgcgccg ccatttcgtt gtaaacggca aaacgcgagc gacgtgtttc
     1621 gggcagttcc agcattttca gacggcctga cgtgtaatcg tcggggatgt tttcatagcc
     1681 gtaaacgcgt ccgatttctt caatcaaatc agcctcaatt tcgatgtcaa aacggaagct
     1741 cggcgcggta acgcggaagc cttccgccgt tttctcgggc tgcagaccca agtgttgcaa
     1801 aatggtttcc acctgttcgg caggaatgtc cacgcccaac acggttttca gacggtccaa
     1861 acgcaatcca acctgcttcg cttcaggcaa ttcgccttgc gcttccacca tctcgcctgc
     1921 cgcaccaccg caaatctgca acaccaattc ggtagcacgt tcaatggcat ccgcctgcaa
     1981 acggtaatcc acgccgcgct cgaagcggaa cgacgaatcc gaaccgaaac cgtattggcg
     2041 cgatttgccg gcgatgattt cgggcgcaaa ccaagccgct tccagcacga tattttgcgt
     2101 gccgtctgaa accgcgctcg ccgcgccgcc cattaagccc gccaaactca acgcgccttt
     2161 ttcgtctgcc acgaccagcg tattttcaga cagggaaacg gttttctcgt tcaggcattc
     2221 cagcgtttcc ccttcgcgcg cgcggcggat gtgcaggctg ccggaaagtt tgtcggcatc
     2281 gaaaacgtgc atcggctggc cgatttccag cattacataa ttgccgatgt ccaccagcac
     2341 ggaaatactg cggatgccgc tgcgctccaa acgttgtttc atccaatcgg gagtagccgc
     2401 tttcgcattg acattttcaa taacgcggct gataaaacgg ccgcaatcgg caggcgcgtt
     2461 aatctgcacg ggctgttttc gactgcccgt gatcggcgcg gtatggattt cgggctgcct
     2521 gaacgcgcac cccgtcaatg cggacacttc gcgcgcaatg cccttaacac tcaagcaatc
     2581 agcgcggtta ggcgtaattt tcaacgtaaa cagcgtatcg tccaaatcca agtattcacg
     2641 gatattgata ccgacaggcg cgtcttcagg caaaatgtgc aggccgttca caccatcatc
     2701 aggcaaacct agttcattgg tcgaacacag cataccgttt gatggcacgc cgcgcatttt
     2761 ggtcggcttg attttgaaat tacccggcaa aacggcaccc ggcaacgaac acggcacttt
     2821 gatgcccgct ttcacattcg gcgcaccgca cacgatctga accaactctc ccgtacccgc
     2881 atcaactcgg gtaacgttca aacggtctgc atccggatgt ttttcaacgg atttcacttc
     2941 ggcaacaacc acgcccgcaa aggcaggtgc ggcagtttca gcctcttcca cttccaagcc
     3001 ggacatcgtt aacagatgtt ccagcttatc ggcggaaagt tcggtatcgg cttgggtttt
     3061 cagccatgag taggagaatt gcatattttt cctaaggatt aaatttgatt ggacaactta
     3121 agggtaaccg agtgtaaatt acattacaca tttttccata aagcagtcta aaaattcttc
     3181 attgacagct ttatttgtca atttccggcg aatgcacaag gaatacaact cttcaactgc
     3241 ggaataagga aaatattggg tatctaaatt tttaaacatc ggaacattcg cttctttaaa
     3301 aactttatcc ctatcttcat caggagcaac gataacccag cgcgtattag catatggtgg
     3361 caacaggtct ttcaactgct tcatccgtgc aaggccggaa cgtacacccg tactatgttc
     3421 cacttccatc accgccggca tcagttttcc attcctgaac cagatgcaat caatattcat
     3481 tgccgcctga accgcgccgt caaacgaact gatcagtttc tcgctttcta tcttttgtac
     3541 gataccatcc aaatcagcaa ttttcttatc cccataacta ataccttggt cgtttctcgc
     3601 aatccacgtc ctgaaaccaa gttgaaaacc tattgctgaa agggcaatct ggatttgcac
     3661 gtggcggcgt tttacatcta tatctatttc tgaatgggtt gaaggaaggg ataaagcatc
     3721 gtaaaccaca ttgttggagg ggatttccga aataacgaca tctgtctcat attccttcat
     3781 tacgcctttt tcatgtggcc tatcgggaag ccaaataatg tgcttgtgcc cttccaccac
     3841 ctcgctttta ttcagacccg gttgtatccg ctgcaatttg caccagtaaa tttcaggtgt
     3901 atgggcaagc aatgcctcca gtgcggaacg aaagttataa cttgcgccaa acaccctgtc
     3961 cacattgaca ggctcccccg tggacaacgc atctgccaac cgccaaattg cttgtttcga
     4021 tatcgaagtt tccgtatctc cccttttaat cttaatcgga ccttccggtt tttcaacatg
     4081 gacgatttgt atggtatgcg tatttgagct gttcacatag ttataattga catttttttt
     4141 caagctatca atcgcactga ccaaattagc agccgtcagt ttttgtccgc tcatagtgat
     4201 tctccaaata agattttaat gtcatcgcta tcccttttgc tgccaaaaac ggtacaccgt
     4261 tgcctatagt tttgaacata ttgctcaatg tcatgttatc aggcagctca aactccttcg
     4321 gcaaagactg tattgccaat gcctccgcag cggaaatcct tcttggcaga tagggatgaa
     4381 tgtggacttc gttgtttccg tatgcagcag tcggagaata acgccagcgg tgtaggcgtt
     4441 tataggactt ctttttatca tccccttcgc ttatggtttg aaatttttct aaacccgctc
     4501 ttggttggaa gtgtttgctc gcattcgggt gtgtatccac cccattgcga ttgaaccaat
     4561 actgaacggt caactcaggg tatatgtttg caggctgact gaccactctt cctacttctt
     4621 ctgtcgtagg ccaatctttt tccaaggcat cagggaatga aatatgagca tcccaatcaa
     4681 acttctgcaa agcatcaaca tgctgactca aaaaacccac taggataatc ctttccctgt
     4741 cttgcggtac gccgtattcg atggcattga tgagtttttc agtgcataca tatccaaaat
     4801 cagaaagttg ccgtttcaac gcattgaaaa actccctatg cttggcagtc ctatatagtc
     4861 ctttcacatt ctcaaataca aaaaaatcag gctggttttt acaaattaaa tccacataac
     4921 tttgtgataa cttaccattc tccccatcct tacctttatt tttccctgca atagaaaaat
     4981 ccggacatgg gggacctcca ataaatccga caataatgcc attttgtttt tcctttttaa
     5041 cccagccagc caaatctttt gctttctcag cataaagaca ttcgtcaata ctacccttaa
     5101 aatatccgta tttaggcttc gggatatcca ttctgcttcg agagtattta tatgcttcca
     5161 aaaatggggg atggacttca ttaacgaagg caatatcaaa tcctgacaac tcgaagccca
     5221 aatccaaaaa gcccgcacca gagaaaaaag aaaaaatcaa agtttttttt ctttcctgcc
     5281 gtatgcttat atccaaattg cagcttttat ccgtcaactg gaaggggaga ttatttttct
     5341 ctcgtttgaa attttgacaa tccctgtttg tcgcggacgg cttgtctgac tttttcggca
     5401 cagcaggttg tatttttaac gacatcatta ctccaaaaac gtaaaaccgc ccagccctcg
     5461 accttcagac ggcctgttac ttccatatcc cttcggatat tgcgttctat cttggcaatc
     5521 caaaattcgc ggttgccctt tatttccgcc tttctctgtt cccaatcctt gccgtgccaa
     5581 aactcgccat caacaaacac ggcaacttta tattttttaa atgaaaaatc aggcttccca
     5641 aaaatgcttc cgctattttt ccgatacctg agccccaaag cccacatcgc cttcgccaac
     5701 gcaagctcgg gcttcgtccc cttgcttttg ttggactgca tacatttttt gcgctgttcg
     5761 ggggttaatc tgtccatttc gtgaggcctg aaacgcgttt atacgaaagc gcattcattt
     5821 tacgcggcat cgttgcggat tccggcagtt ttgcacccct tgcaaggaaa caacaaaacc
     5881 caatcgcgca ggaagccacc tgtttcgtca ggttttccct gcaaagccgc aaggttcgca
     5941 gccggacgga ctcaaaatta ccaagcatcc catccgcaca aatcttcaga acgcatcaat
     6001 tcatctgccg aaatcccgcc gaaatcttgc cgcaggcttt ttcagcccgt ccggccggac
     6061 aatatgcggg ttgcactccg cttgcaggct gcccgcacca ttatttcgca aactgcttca
     6121 aaaaattcaa atcgttatca aaaaacaagc gcaaatcgtt cacgttgtaa cgcagcatcg
     6181 cgaaacggtc gagaccgata ccgaaagcga aaccggtgta tttttcggga tcgatattca
     6241 catttctcaa cacgttggga tgcaccatgc cgcagccgcc gacttccagc catttgccgt
     6301 tttcgcccat aatgtcgatt tcgccagacg gttcggtgaa cgggaagaaa gacgggcgga
     6361 aacgtacttg caaatcatcg cgttcaaaga agcgacggat aaaatccgtg aacactgctt
     6421 ttaagtcggc aaaagttaca ccctcttcta cccacaaacc ttccgcctga tggaacatag
     6481 gcgagtgcgt ggcatcgctg tccacacggt aaacgcggcc gggggcgata atgcggatgg
     6541 gcggctcttt tttatcgagc atatagcgga tttgaatcgg ggaagtgtgc gtacgcaaaa
     6601 catcaccgtt ttcaacgtaa aacgtatcct gcatcgcacg ggcaggatgg tttgcaggga
     6661 tgttcagggc ttggaaattg tgaaaatcgt cttcgatttc aggcccgtcc gccacttcga
     6721 aacccattcc gtgaaagagt tcgaccacac gttgcaaggt cagggttacg ggatgcaggc
     6781 tgccgccttc ctgagcgcgt ccgggcaggg taatgtcgag ggcttcggcg gcaagtcggg
     6841 cttgcagctt ggcttcgttg agggcatcgc gtttggcatt aaaagccgtc tgaaaccggt
     6901 ttttgcattc attgatatgc gcacctatgg ttttgcgctc ttcaggcgac atttgcccca
     6961 aagttttcag aagtccggtc aactcgccgg ttttgccaag ataacgggct ttgatttgtt
     7021 ctagagcgtt gaagtcttgc gcagcttcta ctgcggcaat gccttctgca acgatgcggt
     7081 ttacattttc cataatatca agtctgtcaa ttaatgatat gccacctgaa acaacgaggc
     7141 cgcctgtata gcctgacata tcagactctt cagacgacct tattttcttc acggtcaatc
     7201 cattggataa attttctgta tagtggatta aatttaaacc agtacggcgt tgcctcgcct
     7261 tgccgtacta tccgtactgt ctgcggcttc gtcgctttgt cctgatttaa atttaatcca
     7321 ctatatttta acgcaaattt atttaaaaaa atagacttta aagaaagaaa atcaatcaca
     7381 tagaatttct gcaaacaaag aaaaaaggaa gccgcagctt ccttttcaat tttttggatt
     7441 aagcagccaa agcagatttg gctttttcaa ccaattgtgc aaaagcggct ttatcgaaca
     7501 cggccaaatc agccaatact ttgcggtcga tttcaataga ggcgcgtttc agaccgttca
     7561 taaatttgct gtaagacaac ccgttttcac gcgcacctgc attgatacgg acaatccaca
     7621 attgacggaa ttggcgtttg cgttggcggc ggtcgcggta tgcgtattgg ccggctttca
     7681 ttaccgcctg cttggcaacg cggtaaacgt ttttacgacg accgcggtag cctttggcta
     7741 acgcgaagat tttttggtga cgggcacggg cggtaacacc gcgttttacg cgtggcatat
     7801 tctaaactcc ttaagcgtag ggtaacattt tagcaacaga agccaaatcg cgatcattta
     7861 ccatagaggt accgcgcagt tggcgtttgt ttttggtggt ctttttagtc aagatgtggc
     7921 gtttgaacgc atgagcgcgt ttcacaccgc cgttacccag tactttaaag cgttttttcg
     7981 cgctagactt ggttttcatt ttaggcatgg gaaaactcca ttcgttatcg gataaggcat
     8041 tagggggttt taaaacatcg gtttcaaaca cttgaaccca caatgccacg gttttttgcc
     8101 gcaattaaaa acttactccg aagcggcgat cggagtaagc ggagaattat agctttattt
     8161 tttcttcggc gcaatcatca tcaccatttg gcgaccttcc attttgggaa aggactcgat
     8221 ttgcgccact tcagccaaat cttcttttac acgttccaaa agttgcgcgc cgagttgctg
     8281 gtgagccatt tcacggccgc gaaaacgcaa tgtcactttg actttatcgc cgtcggcaag
     8341 gaagcggtta atgttgcgca tcttgatttg ataatcgccc tcatccgtac ccggacggaa
     8401 tttgatttcc ttgatttgca cctgcttttg atttttcttg gcttcgtcgc gcttcttggc
     8461 ttgttggtat ttgtatttac cgtaatccat cagtttgcac acaggcggtt tagcagttgg
     8521 ggaaatctct accaaatcga catcctgccc ttcggccata gccaaagctt cacgaactga
     8581 aacgacacca agctgttcgc ctgactcact gattaaacgc acttctttgg cggtaatttc
     8641 gccgttgatt cgtgcttcgc gttcttgagc gatgatgaat actcctataa aaattaatga
     8701 ttgacgaggg catcagtgat ttcttgctgc aattgcgcaa tgaaatcatc caaatccaaa
     8761 gaacccaaat cttctgcttt gcggcgtacc gccactttgt tttcctgctt ttctttatcg
     8821 ccgacaacga tttgataagg aaaacggtat tggctgttgt cgcggatttt gtaaccgatt
     8881 ttttcgttac gcaaatccaa ctcggcgcgg aatcctgccg cctgcaattt ggcagccact
     8941 tcacggcagt aatccgcttg attttcggtg atattcataa tcaccatttg aaccggcgcc
     9001 agccataacg ggaaagagcc tgcatggttc tcaatcagaa tgccgataaa ccgctccaaa
     9061 gaacccaaaa tggcgcggtg caacattaca gggcgagcgc ggtcattgtt ttcggttaca
     9121 tattctgcat ccaagcgttc cggtaagacg aaatctagtt gcaatgtacc gcattgccaa
     9181 gaacgaccca aggcatcttt gacgtgatat tcgattttag gcccgtaaaa cgcaccttcg
     9241 ccaggcaact cttcccactc tacgccacaa gcggtcaatg catcacgcaa gccttgttcg
     9301 gccttatccc aaacttcgtc agaacctgca cgttgttcag ggcggaggga caacttcaca
     9361 gcaacatcat ggaaaccgaa ctgtttgtag atgcgaacca acaattcatt gaatgcgcgc
     9421 gcttcgctga cgatttggtc ttcggtacag aaaatatgcg catcatcttg cacaaaaccg
     9481 cgaacacgca tcagaccatg caatgcaccg cttggttcat tgcggtggca agaaccgaac
     9541 tcggccaaac gcatcggcaa atcgcgatat gagcgcaaac cgttattaaa aatttgcaca
     9601 tgacccggac agttcatcgg tttcaccgcg tattcgcgtt tttctgaact ggtcacgaac
     9661 atattgtctt tgtagttgtc ccaatggccg gatttttccc aaaaggtttt atccataatt
     9721 tgaggcgttt tgacctcttt ataaccggcg gcgttcagct ctttacgcat atgctgttca
     9781 atcacttgcc acaaagccca gcctttagga tgccaaaaca ccatgcccgg cgcttcgtct
     9841 tgcagatgga acagatccaa ttgcttgcca agtttgcggt ggtcgcgctt ttcggcttct
     9901 tcgatacgtt gaatataggc ttttaattcg tcttttgtcg cccaagccgt accgtatatg
     9961 cgttgcagca tttcattatt gctgtcgccg cgccagtatg cgcccgccaa cttggtcagt
    10021 ttgaagtttt tcaggaaacg ggtattcgga acgtgcggtc cgcggcacat atcgacatat
    10081 tcctgatgat gatacatccc catcgcttcc acttcgggca tatcgtcaat caggcgcagt
    10141 ttgtattctt cgccgcgctc ttgaaaaatt ttaatcgcct ccgcacgcgg agtcatgatt
    10201 ttgaccacat catagtcttg ggcaatcaat tctttcatac gcgcttcaat ggcggcaaca
    10261 tcttccggtg taaacggttt ttccgtggcg atgtcgtaat aaaagccctc ttcaatgacg
    10321 gggccgataa ccatttttgc attaggatag agttgcttga cggcatgccc gacaagatgg
    10381 gcgcaggaat ggcggatgat ttcgatgcct tcctgatctt tcggagtaat gatttgaaca
    10441 gcagaatttt caacaatcgg gtcgcacgca tcgaccaatt tgccgtttac cctgcctgcc
    10501 accgccgccc tcgccaaacc gacaccgata gacgcagcaa tttgagccac ggtaacgggg
    10561 gattcgtatt ggcggactga gccgtccggc aaggtaatgt tcaacatcaa acgctccgaa
    10621 agattaaaaa ataacggcat aaatgccgtt atgggaattt ggtaggcacg attggattcg
    10681 aaccaacgac ccccaccatg tcaaggtggt gctctaacca actgagctac gtgccttcaa
    10741 agaatttttg cattttatcg ggtcgtttta atttttgcaa gaggtatgtg catttcttta
    10801 tgcaacattg tggcaagatt tggggatgtc gtctgaaaaa ccgtgggaat tcatttataa
    10861 tgccgtcttt taaaacatat ttcgacccct gtcgcccaac tgacattcaa tcttatgctt
    10921 aaatttacct tacacaaaaa agacggatac gcccgacgcg gcacgctgga gttgaaccac
    10981 ggcaaaatcg aaacgccggt atttatgcct gtcggtactt acggctcggt taaggcgatg
    11041 aacccgcaaa acctgcacga catcaaggcg caaattattt tgggcaacac ttatcatttg
    11101 tggctgcgtc cgggcttgga ggtcgtcgaa cagtttggag ggcttcacgg ctttatcggc
    11161 tgggacaaac cgattctgac cgactcgggc ggttttcagg ttttttcttt gtcggatatg
    11221 cgcaagctga cggaagaagg ctgtacgttc aaaagcccga tcaacggcga caagctgttt
    11281 ttatcgcctg aaatttccat gaaaatccaa acggttttga actcggacat cgcgatgcag
    11341 ctggacgaat gcacgccggg cgaagcaacg cgcgaacagg cgaaaaaatc gctgcaaatg
    11401 agcctgcgct gggcggaacg gagcaaaaaa gcctttgaag atttgaaaaa cccgaacgcg
    11461 ctgttcggca tcgtgcaagg cgcgatgtat gaggatttgc gcgaagaatc gctgcgcggt
    11521 ttggaacagt ttgattttcc cggccttgcc gtcggcggtt tgtccgtcgg cgaacccaag
    11581 cccgaaatgt accgtatgct gcgcgccgtc ggtccgattc tgccggaaca caagccgcat
    11641 tacctgatgg gcgtaggcac gccggaagac ctcgtgtacg gcgtggcaca cggcatcgat
    11701 atgttcgact gcgtgatgcc cacccgcaat gcacgcaacg gctggctgtt tacccgtttc
    11761 ggcgatttga aaatcaaaaa cgccaaacac aagctcgaca agcgtccgat agacgaaagc
    11821 tgcacctgct acgcctgcca aaacttcagc cgcgcctacc tgcaccatct gcaccgcacc
    11881 ggcgaaatct tgggcgcaca gttgaacacc atccacaatc tgcatttcta ccaagtcatt
    11941 atggcggaaa tgcgcgaagc cgtcgaacaa ggcaaatttg ccgactggca ggcgcgattc
    12001 cacgaaaacc gcgcacgcgg cacagactga ttccctgcaa tgccgtctga agccgcttca
    12061 gacggcattt tgccgcttta ccctacccgc actatttttc agaaaccgat catgcttcca
    12121 ttctttccag aaccctccct ttcctatacg caacaaaacc gtaccgccgt tttgctgttg
    12181 aacctcggca cgcccgacgc gccgaccgcg caggcggtac gaccttatct gaagtccttt
    12241 ctgaccgacc ggcgcgtcgt cgaactgccc aaatggctgt ggtatcccat tctgcatggt
    12301 ctggtactga cgctccgccc caaaaaaagc gcgcacgcct atgaaaaaat ctggtttaag
    12361 gaaggttcgc ccttagaagt ttacacagca cgccaagctg ccgcgcttgc caaacgtatg
    12421 cccgacctca tcgtccgcca cgccatgacc tacggcaatc cttcggtggc agacgtattg
    12481 tcggaactga aggcgcaagg cgcgggcaga ctgctggtca tcccgatgta cccgcaatat
    12541 gccgcttcca gcagcggagc ggcagtagat aaggtgtgcg aacaattact gctgcaacgg
    12601 aaccaaatga gcgtccgcac cgtttcgcgc ttttatgacg ataccggcta cattgatgcg
    12661 atgaaaaacc acatcctccg atattgggcg gaacacgggc gcgggaaaaa actgatgttg
    12721 agttttcacg gcgtaccgca gaagcaccac gacctcggcg acccctatcc cgacgagtgc
    12781 cgccacaccg ccaaactgct tgccgaagca ctggaactga ccgaagacca atatgtcgta
    12841 tcgttccaaa gccaattcgg cagggcaaaa tgggttacac cgagcacgca ggatttgttc
    12901 ggcaaactgc ccaaacaggg ggtaaccgag ctggacgtat tttgcccggg ctttttggca
    12961 gactgtttgg aaaccatgga agaaatcgcc ctgatggggc gggaacagtt ttacgaagca
    13021 ggcggcaaaa gctaccgcta catcccctgc ctcaacgaca accccgactg gatagacgca
    13081 ctcgtcgcac ttgccgaaga aaaccttggc ggctggcgtt gaaactgttt gacccatgtc
    13141 taaaatgccg tctgaacgcc gtgttcagac ggcattttcc cgctacttta gcgtatgatg
    13201 gcatctatgc cggacaacaa catcaagtgc aaccttacta ccgattcggc aaaaaaatct
    13261 ttcacccgct acgcaaaatc aacaacaagg tttcaaacat taaggaaaca ccaatgaaca
    13321 caacccgact gccgaccgcc ctcgtcttgg gctgcctctg cgccgccgct tctgccgccg
    13381 acaacagcat catgacaaaa gggcaaaaag tgtacgaatc caactgcgtc gcctgccacg
    13441 gcaaaaaggg cgaaggccgc ggaaccatgt ttccgccgct ctaccgctcc gacttcatca
    13501 tgaaaaaacc gcaggtgctg ctgcacagca tggtcaaagg catcaacggt acaatcaaag
    13561 tcaacggcaa aacctacaac ggattcatgc ccgcaaccgc catcagcgat gcggacattg
    13621 ccgccgtcgc cacttatatc atgaacgcct ttgacaacgg cggcggaagc gttaccgaaa
    13681 aagacgtaaa acaggcaaaa ggcaaaaaaa actaaacaga caaaatgccg tctgaaaccg
    13741 gcaatccggc ttcagacggc attcaaatca aacctttcta acgcggtact ttcagcccca
    13801 tagacccgat attgccgtcc ccgtcaacct ccttcgcggt cagcataaag ccgccgatgt
    13861 caatacggcc gcactcgacc ggctcctgac tgtcggaacg cttatcgaaa agctcggcaa
    13921 ggctcaaacc ctcttcgccc gcttccagcc tcaaaccgta agcaagtgcc aaatcacccg
    13981 aacgtgctgc cggcaaaacg acaaactcac cgaagaaatc aaaatactca cggacgctaa
    14041 tacccgtctc ggtaaagtat ttcgccattt tatagtgaa
//
LOCUS       DAXIFD010000038        13947 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.038, whole genome shotgun sequence.
ACCESSION   DAXIFD010000038 DAXIFD010000000
VERSION     DAXIFD010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13947
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.038"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(605..940)
                     /locus_tag="ACFOCN_000802"
     CDS             complement(605..940)
                     /locus_tag="ACFOCN_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HFC6969981.1"
                     /translation="MFGKAGLGGLMKQAQQMQENMKKAQAKLAETEIEGEAGNGLVKI
                     TMTCAHEVRKIDISPDLIQEAADDKEMLEDLILAALKSARGKAEETANKTMGAFTQGL
                     PPGVGDFFR"
     gene            complement(1020..3149)
                     /gene="dnaX"
                     /locus_tag="ACFOCN_000803"
     CDS             complement(1020..3149)
                     /gene="dnaX"
                     /locus_tag="ACFOCN_000803"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HFC6969982.1"
                     /translation="MAYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLT
                     GTRGVGKTTIARILAKSLNCENAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGID
                     NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH
                     KVPVTVLSRCLQFVLHNMTSQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL
                     SLLDQAIAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIINQDGAALTAKAQEMAACAV
                     GFDNALGELAILLQHLALIQAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHG
                     KRDLSLAPDEYAGFMMTLLRMLAFAPLAAASCDTNAVIENTELKSPSAQTAEKETAVK
                     KPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQAAAGTA
                     QTSAKSIQTASEAETPPENQVSKNKAADNVTDAPLSEVPSENPIQATPNDEAVETETF
                     AHEAPAEPFYGYGFPDNDCPVEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNN
                     TPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTAEARAT
                     ADKKRLDKIRDTLAQAYGLQLTLQTQDWRDEAGRETPAMQDKRVQAEDRQKAQALLEA
                     DPAAQKILQAFGAQWQPESLELAANRP"
     misc_feature    complement(1921..1960)
                     /gene="dnaX"
                     /locus_tag="ACFOCN_000803"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01843"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="This ribosomal frameshift element is known only in
                     the genus Neisseria; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01843"
     gene            complement(3244..5220)
                     /gene="mutL"
                     /locus_tag="ACFOCN_000804"
     CDS             complement(3244..5220)
                     /gene="mutL"
                     /locus_tag="ACFOCN_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0032300 - mismatch repair complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HFC6969983.1"
                     /translation="MSRIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAID
                     VELAGGGIRLIRVSDNGGGIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLAS
                     IASVSRLTLTSRQEDSSHATQVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKF
                     LKSEATEYAHCATMLERLALAHPHIAFSLKRDGKQVFKLPAQSLHERIAAIVGDDFQT
                     ASLEIDSDNGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLH
                     NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTE
                     SVSNAGEVLHDITGVTPAPMPSENNSENLFDRASNYPTGNKSDTHNAFGSSGKTAPMP
                     YQSAYAPQQRSLSLRESRAAMNTYAELYKKTDDIDLELSRFEQARFGNMPSETPAPQT
                     DTPLSDGIPSPSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQR
                     QENGNLQSQRLLIPVTFAASHEECAALADHAEALAGFGLELSDMGGNTLAVRAAPAML
                     GKSDVVSLARDVLNEFAQVGSSQTIEEHENHILATMSCHGSIRAGRRLTLPEMNALLR
                     DMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ"
     gene            5364..5549
                     /locus_tag="ACFOCN_000805"
     CDS             5364..5549
                     /locus_tag="ACFOCN_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HFC6969984.1"
                     /translation="MYHYQSEATQFLNRLIEEKPELEQQRLENRGLLWDVELNPEEQE
                     NFEAAKVAKKPYTYYQD"
     gene            5560..6228
                     /locus_tag="ACFOCN_000806"
     CDS             5560..6228
                     /locus_tag="ACFOCN_000806"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6969985.1"
                     /translation="MTTHLSNVAPDLQNYLNAIGEPEHPVLMRLREKTGHHRMGKMAI
                     AREQAAVLVWLAKLIRAEKYLEVGVFTGYSSTALALALPEHGRITACDINVSFTDTAR
                     QVWNEAGVAHKISLHLQPALLTLDDLIVQGEAGSYDLALIDADKPPTPQYFERCLKLV
                     RQGGIIAIDNILLNGRVMREAASDAPPSVGILKDFNQNLPNDPRIVPITLPVGDGLTL
                     LLKK"
     gene            6228..6944
                     /locus_tag="ACFOCN_000807"
     CDS             6228..6944
                     /locus_tag="ACFOCN_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system YbgF family protein"
                     /protein_id="HFC6969986.1"
                     /translation="MKTKLPLFIIWLSVSAACSSPVSRNIQDMRLEPQAEAGSSDAIP
                     YPVPTLQDRLDYLEGTLVRLSNEVETLNGKVKALEHAKTHPSSRAYVQKLDDRKLKEH
                     YLNTEGGSASAHTVETAQNLYNQALKHYKSGRFSAAASLLKGADGGDGGSIAQRSMYL
                     LLQSRARMGNCESVIEIGGRYANRFKDSPTAPEAMFKIGECQYRLQQKDIARATWRSL
                     IQAYPSSPAAKRAAAAVRKR"
     gene            6993..7478
                     /gene="purE"
                     /locus_tag="ACFOCN_000808"
     CDS             6993..7478
                     /gene="purE"
                     /locus_tag="ACFOCN_000808"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HFC6969987.1"
                     /translation="MTQIGIIMGSNSDWPVMRQAAQFLEEFGVEYEARVVSAHRTPDL
                     MFQYAETARARGIKAIIAGAGGAAHLPGMVAAKTTVPVLGVPVPSKYLRGEDSLLSIV
                     QMPKGVPVATFAIGEAGAANAALFAVSMLANENPELAQKLADFRAKQEQAVLSMELEQ
                     I"
     gene            complement(7494..7652)
                     /locus_tag="ACFOCN_000809"
                     /pseudo
     CDS             complement(7494..7652)
                     /locus_tag="ACFOCN_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(7661..9115)
                     /locus_tag="ACFOCN_000810"
     CDS             complement(7661..9115)
                     /locus_tag="ACFOCN_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HFC6969988.1"
                     /translation="MTTQTIKFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRK
                     AVLTDEEELQSLRDLCEHVRQRSLSKLPALLEQLEENLTKLGVKVHWAETPTEACQII
                     HDIITAKNGKLMVKGKSMVSEEIELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVM
                     PAIHKTKEQVSELFHQNLGTPLTDDVDQLTGFARKALRDIYSTADVGLSGVNFAVAET
                     GTLCLVENEGNGRLSTTVPPVHIAITGIEKVVAKLSDIPPLYSLLPRSAIGQNITTYF
                     NMITGPRRSEELDGPQEMHLVLLDNGRSQAYAEDQMRRTLQCIRCGACMNHCPVYTRI
                     GGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVEVCPVRIPITEQMQRLR
                     VEAQRSPTETVPHPILGQGASHTFGEQMAWRTFNGIFSGSKTYRAFGWAATKFRNLTP
                     RKQLGWTQNRVPMKPAKKTLHELMAEKMRQKEQA"
     gene            complement(9112..9813)
                     /locus_tag="ACFOCN_000811"
     CDS             complement(9112..9813)
                     /locus_tag="ACFOCN_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HFC6969989.1"
                     /translation="MSARENILAKLKKADALPMEEPAVFDYYREMGVSWGSEVERLKH
                     WAAAMRAVKTEIYWVTKSNWMQVFREAAEGKGLKNILLPLATEHGQIARAALADSNIE
                     PIAFEREIDTWKTEFFTNIDAGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCL
                     FDTSKMYNEFHNAVEGEKLVENGMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVILA
                     ILPDHISPADLEENA"
     gene            complement(9810..10589)
                     /locus_tag="ACFOCN_000812"
     CDS             complement(9810..10589)
                     /locus_tag="ACFOCN_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFC6969990.1"
                     /translation="MSATIPPKIIRYDSNPTDVYFFGTCVLDLFMPEAGMDAITLIEQ
                     QGIRVHFPMAQSCCGQPAYSSGHPTEAFDVARAQLDLFPEEWPIVVPSGSCGGMMKHH
                     WPTLFKGSEYEERAVDCAGRIIEFTHFLLAIGFKPEDKGEPLKVAVHTSCAARREMNV
                     HLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQADISGAMVTDKVAALKETGATE
                     IISADCGCMMNIGGKIAKDEPNMPRPKHIASFLLERTGGKA"
     gene            10873..12279
                     /locus_tag="ACFOCN_000813"
     CDS             10873..12279
                     /locus_tag="ACFOCN_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6969991.1"
                     /translation="MEKNTLSARAPSPWLPLLLAIAIFMQMLDATILNTALPEIAADL
                     NESPLNMQLAVISYTLTVALLIPLSGYLADRFGTKKVFFGSIAVFMLGSALCAASGSL
                     FELTLSRVVQGIGGSMLVPIPRLTILRVYDKSKLHNAINYAVMPALIGPVLGPLAGGY
                     LVEYASWHWIFLLNLPIGLLGFILGRNIMPDIKGSNISLDFKGYLIFSAAACLLLLSA
                     ESLSHALPPYFALLPLCGGLLFARRYFRHMKTASKPIYSADLFLIRTFRLGLAGNLFS
                     RLGISSIPFLMPLMFQVAFGFGASLSGWLVAPVALSSLLVKPLIAPLMKRFGYRTVLL
                     WNTKLLAAFIMLLALPDGNSPLWIWIFLSLAIGACNSLQFSAMNTLTLADLRPQQTGS
                     GNSLMAVNQQLAISMGIVVGALILKNWTFLIPASSGLHSAFRMTLLSIGGITLASSLV
                     FKRLHVSDGANLTRNTPS"
     gene            12391..13917
                     /locus_tag="ACFOCN_000814"
     CDS             12391..13917
                     /locus_tag="ACFOCN_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HFC6969992.1"
                     /translation="MKTRSLISLLCLLLCSCSSWLPPLEERTESRHFNTSKPVRLDNI
                     LQIRHTPHTNGLSDIYLLNDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNL
                     VYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVLRKWRALGYLTDF
                     PRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSHDF
                     DRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
                     RIDWQSVQTRLISDDPAKGLDRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGT
                     DALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPAT
                     KDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMER
                     TLADTTPKYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
                     "
BASE COUNT         2832 a         3750 c         3914 g         3451 t
ORIGIN      
        1 ccctttatat caaatgcaaa aaatatgccg tcattcccgc gaacgcggga atccagaccc
       61 ctcggcacgg aaatttatcg agtaaaacgg tttctcagat tctacgttct agattcccgc
      121 gttcgcggga atgacggtcg ggggtttctg ttttttccga tagattcccg tggtttttcg
      181 gttactggat tcccgcgttc gcgggaatga cggtcgaggg tttctgtttt tccgatagat
      241 tcctgtggtt tttcggttac tggattcccg cgttcgcggg aatgacgggg tgtaagtttc
      301 tgctccgacg gggttggatt cccgctttca cgggaatgac gaagtttcag acggcattta
      361 agcggtacgg atgtgtaaat aatggtaggg tgggcttcag cctgctgatt cccgctattc
      421 ttgccgtttt tgcgttctta tcattctcac tgtttttacc gttcacgccg aatcctgcaa
      481 actgatgccg tcattcccgc gaaggcggga atccagaccc gtcggcacgg aaatttatcg
      541 agtaaaacgg tttcttagat tctacgttct agattcccgc ctgcgtggga atgacggtcg
      601 ggtatcagcg gaagaagtcg cccactccgg ggggtagacc ttgcgtgaat gcgcccattg
      661 ttttgtttgc ggtttcttcg gctttgcccc gggcggattt gagggcggcg aggatgaggt
      721 cttcgagcat ttctttgtcg tcggcggctt cttgaatcaa atcggggctg atgtcgattt
      781 tgcgtacttc gtgcgcgcag gtcattgtga ttttgaccag gccgttgcct gcttcgcctt
      841 cgatttcggt ttcggcaagt ttggcttgcg cttttttcat attttcctgc atttgctgcg
      901 cctgtttcat caggccgcct aatccggctt ttccgaacat actgaatact cctgtctgtt
      961 ttgattgaat gagggaaacg gcaatgccgt ccgaagggtt cgggcggcat tatatctgtt
     1021 tatggccggt ttgctgccaa ttccagtgat tcgggctgcc attgcgcgcc gaatgcttgg
     1081 aggatttttt gtgcggcggg gtcggcttcg agcaatgctt gtgctttttg cctgtcttcg
     1141 gcttggacgc gcttgtcctg catcgcgggg gtttccctgc cggcttcgtc gcgccagtct
     1201 tgggtttgca gggtgagttg cagtccgtag gcttgggcaa gggtgtcgcg gattttgtcg
     1261 agacgttttt tgtcggcggt ggcgcgggct tcggcggtca tcgccaaaac catcaggccg
     1321 gtgtcgggat ggtattccgt ccacgcggag tgttgcgccg gcatttgcgc cgcgccgagt
     1381 ttgcgggcga aatgccggac gatggctgcc cagttttcgg tggaaaattc gggcggcggg
     1441 gcggacggcg tgttgtttcc gccgatgccg cctgcttctg cttcttcgtc cgcgcctccg
     1501 cctgcggtat cggcaggggc ggcgtgttcc caatcgggcg gcgggatttc tgcgccgtct
     1561 tctacggggc agtcattatc cggaaagccg taaccgtaga aaggttctgc aggggcttcg
     1621 tgtgcaaatg tttccgtttc aacggcttca tcattcggtg ttgcctgaat ggggttttca
     1681 gacggcactt cggacaaggg ggcatcggtt acgttgtcgg ctgccttgtt cttggaaact
     1741 tggttttcgg gcggcgtttc ggcttcggat gccgtctgaa tgctttttgc cgacgtttgc
     1801 gccgtgccgg ctgcggcttg ggcttcgtct ggcgcgtctt cccaaggcgg aacatcgttg
     1861 ttttcttgat tggaaacggg tccggcagtt ttgccttcag acggcattgc cgctgcggat
     1921 gccgtctgaa cgggtgtttg ggcggtttct gcttcagggc gcggttgggg cttttttacg
     1981 gcggtttcct tttcggcggt ttgtgccgat ggggatttta gttcggtatt ttcaatcacg
     2041 gcgtttgtat cacacgaagc tgccgccaag ggcgcaaacg ccagcatacg cagcagggtc
     2101 atcataaagc cggcgtattc gtcgggggcg aggctcaggt cgcgtttgcc gtggacggcg
     2161 atttggtagt aaagctggat ttgttcgccg cttatggttt gggcgaggcg gtgcaaaata
     2221 tcggaatcgg ggtcgtcgtg cgccaaggcg gagggcaccg cctgtatcag ggcgaggtgt
     2281 tgcagcagta tggcaagttc gcccaaggcg ttgtcaaagc cgacggcaca cgccgccatt
     2341 tcctgcgctt tggcggtcag ggctgcgccg tcttggttga tgatgcctgt caagagttcg
     2401 taaaggtatt gtttgtcaac cgcaccgatc atttggcgga cgtcttgttc ggcaacgctg
     2461 cccgaaccca tggcgatggc ttggtcgagc aggctcaagg catcgcgcat cgatccggcg
     2521 gcggcgcgtc ccaaaagttg cagggcaggg ggttcgtagg cgattttttc gctgtcgagg
     2581 acgtgggcga ggtggtcggc aacctgctgc gaagtcatat tgtgcaagac aaattgcagg
     2641 cagcggctca agacggtaac ggggacttta tgcggatcgg tcgtggcaag gatgaatttg
     2701 acgtgttcgg gcggctcttc cagcgttttg agcatagcgt tgaacgcgct tttggaaagc
     2761 atatgcactt cgtcgatgat atagactttg tatttgccgg cagtcggtgc atattgggcg
     2821 ttttccaata cttcgcggat gttgtcgatg cctgtgttgg aggcggcgtc gatttcgagc
     2881 aggtcgacat agcgtccggc atcgatttgg gtgcagcttt cgcacacgcc gcaaggttcg
     2941 ccgtgttgcg cgttttcgca gttgaggctt ttggcaagga tgcgggcgat ggtggttttg
     3001 cctacgccgc gcgtaccggt cagcaggtag gcgtggtgca gcctgccttc gtccaaggcg
     3061 ttttgcaagg ctttgacgac gtgttcctga ccgactaagt cggaaaaggt tttgggccgc
     3121 cattttcggg cgagaacttg ataggccatg tttttctctt ggtttcggtc gtgatgtttc
     3181 tgtcggtgcg tcggaatgcc gtctgaacgg cggcttcggg cggcgtattc tagcactttc
     3241 ggtttattgt ccgcgcaaga acagtgcgtc caattctttc aaagtcagtt tgacccaagt
     3301 cggcctgccg tggttgcact ggttgctgcg cggcgtattt tccatatcgc gcagaagggc
     3361 gttcatttcg ggcagggtga gccggcggcc ggcgcggatc gagccgtggc aggacatggt
     3421 ggcgaggatg tggttttcgt gttcctcgat ggtttggctg ctgccgactt gggcgaattc
     3481 gtttaatacg tcgcgggcga gggagacgac atcggatttg cccaacattg cgggtgcggc
     3541 gcggacggcg agggtgttgc cgcccatatc ggacagttcc agcccgaagc ctgccagtgc
     3601 ttcggcgtgg tcggcaaggg cggcgcattc ttcgtgggac gcggcaaagg ttacgggaat
     3661 aagcaggcgt tggctttgca ggttgccgtt ttcctgacgt tggcgtttca ttttttcgta
     3721 gttgacgcgt tcggcggcgg cgtgcatatc gatgagcaac aggctgtctt cggcttgggc
     3781 aagaatgtag atgccaagta attgggcaat ggcgaaaccg agcggcggca gttcggatgg
     3841 ggacgggatg ccgtctgaaa gcggcgtatc tgtttgggga gcaggcgttt cagacggcat
     3901 attgccgaaa cgtgcctgct cgaatcggct taactcaagg tcgatgtcgt cggttttttt
     3961 gtaaagttcg gcgtaagtat tcattgccgc gcggctttcg cgcagggaca ggctgcgttg
     4021 ttgcggcgca tatgcggact gatagggcat gggcgcggtt ttgcctgatg aaccaaaggc
     4081 attgtgtgta tctgatttgt tgcctgtcgg gtagttggat gcgcgatcaa acagattttc
     4141 gctgttgttt tcagacggca ttggtgcagg cgtaacgccg gtaatgtcat gcaacacttc
     4201 gcctgcgttg ctgacgcttt cggtcaggtc ggcgcgtgtg tcggcaaggg ctttgttgag
     4261 cgtgtggaac acaagttggt gcacctgctg actgtcgcgg aagcggattt cggttttggt
     4321 cgggtggacg ttgacatcca cggcttcggg cggcaggtcg agaaagagga cgaaagcagg
     4381 cgtcagtgcg ttgtgcaata cgtcgcggta tgcctgcttg acggcatgga gcatgacttt
     4441 gtcgcggaca aaacgatggt tgacgaagca gtattgtttg tcggttttac ctttggcgaa
     4501 agtcggtttg gcaatcgcgc catagagccg caatgcgccg ttgtcgctgt caatttccaa
     4561 tgatgccgtc tgaaaatcat cgccgacaat ggcggcaatc cgttcatgca ggctttgtgc
     4621 agggagtttg aacacttgtt tgccgtcgcg tttgagcgag aaggcaatgt gcggatgcgc
     4681 cagcgcgagg cgttcgagca tagtggcgca gtgggcgtat tcggtggctt cagacttgag
     4741 gaacttgcgc cgcgcagggg tattgaagaa gagttcggcg gcttcgatgg tggtgccgac
     4801 ggggtgggcg gcggcggtgg ggctgctgag tttgccgtct tcggctttga cttgggttgc
     4861 gtgcgaactg tcttcttgac ggctggtcag ggtcaggcgg ctgacggagg cgatgcttgc
     4921 caagccttcg ccgcgaaagc ccatgctggc aacgtgttcc aaatcgttta aggttttgat
     4981 tttgctggta gcgtgtcggt ggagcgcaag ctcgatgtcg tcggggtgga taccgccgcc
     5041 gttgtcgctg acgcgaatca ggcggatgcc gccgcccgcc agctcgacat caatcgccgt
     5101 tgcgcctgca tcgatactgt tttcaacaat ttctttcaag gcgttggcag ggcgttcgac
     5161 tacttcgccg gcagcgattt ggttgacaag atggtcgggc agggcggcaa ttcgggacat
     5221 ggcatgggct tccgtttcaa aaaacgcttt attctataat aaaacccctt atctttctgc
     5281 ccgtattctt gataaaagcc gtttatcccg tttggaaaat accagtataa tcacgccgta
     5341 tcccgtaaaa ttggagcgca aagatgtacc actaccaatc cgaagccaca caattcctca
     5401 accgcctgat tgaagaaaaa cctgagttgg aacagcagcg tttggaaaac cgggggcttt
     5461 tgtgggatgt cgaactcaat cccgaagaac aggaaaactt cgaggcggca aaagtagcga
     5521 aaaaacctta tacctattac caagactgaa cccgccgaaa tgacgaccca tctgtccaat
     5581 gtcgcccccg acctgcaaaa ctatttgaac gccatcggcg aacctgaaca tcccgttttg
     5641 atgcggctgc gcgagaagac cgggcatcac cgtatgggca aaatggcgat tgcgcgcgaa
     5701 caggcggcgg ttttggtttg gctggcaaag ctgatccgtg cggaaaaata tctggaagtc
     5761 ggcgtgttta ctggatacag cagcaccgcg cttgcattgg cgttgcccga acacgggcgg
     5821 attaccgcct gcgacatcaa tgtaagcttt accgatacgg cgcgtcaggt ttggaacgag
     5881 gcaggtgtgg cacataaaat cagcctgcac ctgcaacccg cattgctgac attggatgat
     5941 ttgattgtac agggtgaagc cggaagctac gatttggcac tgatagacgc agacaaaccg
     6001 cccacgccgc aatatttcga gcgttgcctc aaactcgtcc ggcaaggcgg catcattgcc
     6061 attgacaata ttttgttgaa cggaagggtg atgcgcgaag cggcttccga cgcgccgccc
     6121 agtgtcggca tcctcaaaga tttcaatcaa aacctgccga acgacccgcg catcgtcccc
     6181 atcaccctgc ccgtcggcga cggtttgacc ctgcttctga aaaaataatg aagaccaaat
     6241 taccgctttt tatcatttgg ctgtccgtat ccgccgcctg ttcttcccct gtttcccgca
     6301 atattcagga tatgcggctc gaaccgcagg cagaggcagg tagttcggac gctattccct
     6361 atcccgttcc cactctgcaa gaccgtttgg attatctgga aggcacactc gtccgcctgt
     6421 cgaacgaagt ggaaacctta aacggcaaag tcaaagcact ggagcatgcg aaaacacacc
     6481 cttccagcag ggcatacgtc caaaaactcg acgaccgcaa gttgaaagag cattacctca
     6541 ataccgaagg cggcagcgca tccgcacata ccgtcgaaac cgcacaaaac ctctacaatc
     6601 aggcactcaa acactataaa agcggcaggt tttctgccgc tgcctccctg ttgaaaggcg
     6661 cggacggagg cgacggcggc agcatcgcgc aacgcagtat gtacctgttg ctgcaaagca
     6721 gggcgcgtat gggcaactgc gaatccgtca tcgaaatcgg agggcgttac gccaaccgtt
     6781 tcaaagacag cccaaccgcg cccgaagcca tgttcaaaat cggcgaatgc caatacaggt
     6841 tgcagcagaa agacattgca agggcaactt ggcgcagcct gatacaggct tacccgagca
     6901 gcccggcggc aaaacgcgcc gccgcagccg tacgcaaacg atagtttttc catttttccg
     6961 ctttttaccc catccgcacc aaggagagat ttatgacaca aatcggcatc atcatgggca
     7021 gcaacagcga ttggcccgtt atgcggcagg cagcgcagtt tcttgaagag ttcggcgtag
     7081 aatatgaggc gcgcgtcgtt tccgcacacc gcactccgga tttaatgttc caatacgccg
     7141 aaaccgcacg ggcgcgcggc atcaaagcca tcatcgcggg tgcgggcggc gcggcgcatt
     7201 tacccggcat ggttgccgcc aagaccaccg tccccgtttt gggcgtaccc gtccccagca
     7261 aatacctgcg cggcgaagat tcgcttttat cgattgtaca aatgcccaaa ggcgtacccg
     7321 tcgccacatt cgccatcggc gaggcaggcg cggcaaatgc cgcattgttc gccgtttcca
     7381 tgctggccaa cgaaaacccc gaactggcgc aaaaactggc agacttccga gccaaacagg
     7441 aacaggctgt tttgagtatg gaattggaac agatttaaaa cccgccgtcc gcgaatatat
     7501 agtggcttaa atttaaacca gtacggcgtt acctcgcctt gccgtactat ttgtactgtc
     7561 tgcggcttcg tcgccttgtc ctgatttttg ttaatccact atacaaatgc cgtctgaagc
     7621 cctgtttcgg gtttcagacg gcatttttgc aaacaactgt ttatgcctgt tctttttggc
     7681 gcattttttc tgccattagt tcgtgcaggg ttttcttcgc cggtttcatc ggcacgcggt
     7741 tttgcgtcca acccaactgt ttgcgcgggg tcaggttgcg gaacttggtg gctgcccaac
     7801 cgaaggcgcg gtaggttttg ctgccgctga aaataccgtt gaatgtgcgc cacgccattt
     7861 gttcgccgaa ggtatgcgat gcgccttgcc ctaggatggg gtgtggcacg gtttcggtcg
     7921 gcgaacgttg cgcttcaacg cgcaaacgct gcatttgttc ggtaatcggg atgcgtaccg
     7981 gacagacttc cacacacgcg ccgcacatgg tacaggcggt tggcaagtcg cgggtggcat
     8041 ccagacccaa caggtgaggg gaaataatct cgccaatcgg gccgggatag gttgtgccgt
     8101 atgccgcgcc gccgatacgg gtataaaccg ggcaatggtt catacacgcg ccgcaacgga
     8161 tacattgcaa ggtgcggcgc atttggtctt cggcataggc ttggctgcga ccgttgtcaa
     8221 gcaggaccaa gtgcatttct tgaggaccgt ccagctcttc gctacggcgc gggccggtaa
     8281 tcatattgaa ataagtggta atgttctgac caatggcaga acgcggcagc aggctgtaca
     8341 agggtgggat gtcggacaat ttcgccacca ctttttcaat gccggtaata gcgatatgca
     8401 cgggcggtac ggtggtactc aagcgaccgt tgccttcgtt ttccaccaga cacagcgtac
     8461 ccgtttcggc aacagcaaag tttacgccac tcaaaccgac atcggcagtg ctgtaaatat
     8521 cgcgcagggc tttgcgggcg aagccggtca gttggtccac gtcgtccgta agcggagttc
     8581 caaggttttg gtggaacagt tcactcacct gttctttggt tttgtgaatg gcgggcatca
     8641 cgatatgggt cggtttttcg cctgccattt ggacgatgaa ctcgcccaag tcgctttcta
     8701 ccgctttaat gccttttgct tcaagataat ggttcagctc gatttcctcg ctgaccatcg
     8761 atttgccttt gaccatcagc ttgccgtttt tggctgtgat gatgtcgtgg ataatttggc
     8821 aggcttcggt cggggtttct gcccagtgca ctttcacgcc caacttagtc aggttttctt
     8881 ccagctgctc cagcagggct ggcaatttag acaatgagcg ctgacggacg tgttcgcaca
     8941 aatcgcgcag gctttgcagc tcttcttcgt cggtcaaaac ggctttgcgt ttggtcatca
     9001 gcatatccat cgcggtacgc aggcttttgc gcaaaggctt gtcttgaagg gaaattgcgg
     9061 cgttttgctt gaaagtttcc ggcttcatgt gaaatttgat ggtttgcgta gtcatgcgtt
     9121 ttcctccaaa tcggcagggg aaatgtggtc gggcaggatg gcgaggatga ccaaatcgcg
     9181 cgggccgtgc gcgccgtaag caagcgtcag ttggatgtct gcggttttgg acgggccgga
     9241 aatcaggaat acattggtcg gcataccgtt ttccaccagt ttttcgcctt cgacggcatt
     9301 atgaaactcg ttgtacatct tggacgtatc gaacaggcag aaatgcacgg gcggaacgag
     9361 actcaaagta cgcggttctt cggggctgga aaacagcatc agcgtgccgg tgcgggcgat
     9421 gccgcattgc gcgccgctga agcccgcatc gatgttcgtg aaaaactcgg ttttccaagt
     9481 atcgatttcg cgctcgaagg caatcggttc gatattgctg tccgccaatg cggcacgggc
     9541 aatttgtccg tgttcggtcg ccaagggcag caggatgttt ttcaaaccct tgccttctgc
     9601 cgcttcgcgg aaaacctgca tccaattgct tttcgtcacc caataaattt cggttttgac
     9661 cgcacgcata gcggcagccc aatgtttcag acgctcaact tcgctgcccc aagaaacacc
     9721 catttcacgg taataatcaa aaaccgcagg ttcttccatc ggcaatgcgt cggctttttt
     9781 cagttttgcc aaaatatttt cgcgcgcgct catgctttgc ctccggtacg ttccaacaag
     9841 aaggatgcga tatgtttcgg acgcggcata ttcggttcgt ccttagcaat tttgccgccg
     9901 atgttcatca tacagccgca gtccgcgctg atgatttcgg ttgcgccggt ttctttcagc
     9961 gcggcgactt tgtcggttac catcgcgccg gaaatatcgg cttgtttgac ggagaatgtg
    10021 ccgccgaagc cgcaacattc gctttcgtgg tcgtggacga tgcgttcgac gttttccata
    10081 ccgtcaatca gttgccagcc cgagagatgg acattcattt cgcggcgggc ggcgcaggaa
    10141 gtgtgaacgg cgactttgag cggttcgccc ttgtcttcgg gtttgaaacc gatggcaagc
    10201 aggaaatggg taaactcgat gatgcggccg gcgcaatcca cagccctttc ctcgtactcg
    10261 ctgcctttaa acagcgtcgg ccaatggtgc ttcatcatac cgccgcacga accggacggt
    10321 acgacaatcg gccactcctc ggggaaaagg tcgagttgcg ctctggcgac atcaaaggct
    10381 tcggtcggat ggccggatga ataggcgggc tgaccgcagc agctttgcgc catcgggaaa
    10441 tggacgcgta tgccctgttg ctcgattagg gtaatggcat ccatgcctgc ttcgggcata
    10501 aaaagatcaa ggacgcaagt gccgaaaaaa tagacatcgg tcggattgct gtcgtatcgg
    10561 atgatttttg ggggaatggt tgcgctcatg ttttttgata acgggaaacc cgtttttttc
    10621 tgtagaaagg taagcgttta ctttaagtaa ttgactgttg cgggtcaagt ctaattttaa
    10681 aaaataatcc ggtttttctt acaaactacc ccataacgct tactgtacct taatctgata
    10741 gttttcgata ataattatca ttacaatgca atgccggttc gtttgcttgt gaacattcaa
    10801 gatgccgact ctgacggcat tcagacagca tctgaaaaca ataacggcac aaggatgggg
    10861 tacaatcgct ctatggaaaa aaacacccta tccgcccgcg caccatcccc ttggctgccg
    10921 cttctgctgg caattgccat ttttatgcag atgttggatg cgaccatttt aaataccgca
    10981 ctgcctgaaa ttgccgccga cctgaatgag tcgccattga acatgcagct ggcggttatt
    11041 tcctacacgc tgacggttgc cctgctgatt cctttgagcg gttatttggc ggacaggttc
    11101 ggaacgaaaa aagtcttttt cggttcgatt gccgttttta tgctcggatc ggcattgtgc
    11161 gccgcatcgg gttcgctgtt tgaattgacg ctttcccgtg tcgttcaggg catcggcggt
    11221 tcgatgctgg ttccgatacc gcgtctgacc atcttgcgtg tgtacgacaa gtccaagctg
    11281 cacaacgcca tcaattatgc ggttatgccc gcattaatcg gaccggtttt agggcctttg
    11341 gcgggcggtt atctggtcga atacgcttcg tggcactgga ttttcctgct caacctgccc
    11401 atcggtcttc tgggtttcat attgggacgc aacatcatgc ccgatattaa aggcagcaat
    11461 atctctttag acttcaaagg ctatctgatt ttttctgccg ccgcgtgcct cttgttactt
    11521 tcggcagaaa gcctgtcgca cgcgctgcct ccgtattttg cactgttgcc gctgtgcggc
    11581 ggactgctgt ttgcacgccg ttatttccga catatgaaaa ccgcgtccaa accgatttat
    11641 tccgccgacc tgtttctgat acgcactttc cgtctaggac tggcgggcaa tctgttcagc
    11701 cgtctcggca tcagctcgat tccttttctg atgcccctga tgtttcaagt cgctttcggc
    11761 ttcggcgcaa gcctgtcggg ttggctggtc gcccccgtcg ccctgtcttc gctgctggtc
    11821 aaaccgctga ttgcaccgct catgaaacgt ttcggctacc gcacggtact gctttggaac
    11881 accaagctgc ttgccgcctt catcatgctg ctcgccctac ctgatggaaa ctcgccgctg
    11941 tggatttgga ttttcctctc gctggcgatc ggcgcgtgca actccctaca gttttctgcc
    12001 atgaacacac tgaccctcgc cgatttgcgc ccgcaacaga ccggcagcgg caacagcctg
    12061 atggcggtca accaacagct tgccatcagc atgggcattg ttgtcggcgc attaatcctt
    12121 aaaaactgga catttctgat accggcttct tcaggtctgc attccgcctt ccgtatgacc
    12181 ctgctcagta tcggcggcat tacccttgcc tcgtcgttgg ttttcaagcg tctgcacgtt
    12241 tcagacggtg caaacctgac acggaacaca ccgtcctaaa gcggtccgca cgcaaaactt
    12301 ttacccgttt caacgtttgg attatgattc cgcacttcca tgcgcaccaa ccccaaaaca
    12361 caggcaatgc cgtctgaaac catatccctg atgaaaacac gcagcctaat ttccctttta
    12421 tgcctccttc tctgttcatg ttcttcatgg ttgcccccac tggaagaacg gacggaaagc
    12481 cgtcatttca atacttccaa acccgtccgc ctggacaaca tcctgcaaat ccggcacacc
    12541 cctcatacca acgggctatc cgatatctat ctgttgaacg acccccacga agcctttgcc
    12601 gcccgcgccg cccttatcga atctgccgaa cacagcctcg atttgcaata ctacatctgg
    12661 cgcaacgaca tttccggccg actgctgttc aacctcgtgt accttgccgc agaacgcggt
    12721 gtgcgcgtac gcctgctgtt ggacgacaac aacacgcgcg gattggacga cctcctgctc
    12781 gccctcgaca gccatcccaa tatcgaagtg cgcctgttca accccttcgt cttacgaaaa
    12841 tggcgcgcac tcggctacct gaccgacttc ccccgcctca accgccgcat gcacaacaaa
    12901 tcctttaccg ccgacaaccg cgccaccata ctcggcggac gcaatatcgg cgacgaatac
    12961 ttcaaagtcg gtgaggacac cgttttcgcc gacctggaca tcctcgccac cggcagcgtc
    13021 gtcggcgaag tatcgcacga cttcgaccgc tactgggcaa gccattccgc ccacaacgcc
    13081 acgcgcatca tccgcagcgg caacatcggc aagggtcttc aagcactcgg atacaacgac
    13141 gaaacgtcca gacacgcgct cctgcgctac cgcgaaaccg tcgaacagtc gcccctctac
    13201 caaaaaatac agacaggacg catcgactgg cagagcgtcc aaacccgcct catcagcgac
    13261 gaccctgcaa aaggactcga ccgcgaccgc cgcaaaccgc cgattgccgg gcggctgcaa
    13321 gacgcgctca aacagcccga aaaaagcgtc tatctggttt caccctattt cgtccccaca
    13381 aaatccggca cagacgcact ggcaaaactg gtgcaggacg gcatagacgt taccgtcctg
    13441 accaactcgc tacaggcgac cgacgttgcc gccgtccatt ccggctatgt caaataccga
    13501 aaaccgctgc tcaaagccgg catcaaactc tacgagttgc aacccaacca tgccgtccct
    13561 gccacaaaag acaaaggcct gaccggcagc tccgtaacca gcctgcatgc caaaaccttc
    13621 attgtggacg gcaaacgcat cttcatcggc tcattcaacc tcgacccccg ttccgcacgg
    13681 ctcaatactg aaatgggcgt tgttatcgaa agccccaaaa tcgcagaaca gatggagcgc
    13741 acccttgccg ataccacacc caaatacgcc taccgcgtta ccctcgacag gcacaaccgc
    13801 ctgcaatggc acgatcccgc cacccgaaaa acctacccga acgaacccga agccaaactt
    13861 tggaaacgca tcgccgcaaa aatcctatcc ctgctgccca tagaaggttt attatagaaa
    13921 tgtagcggat taacaaaaac cagtacg
//
LOCUS       DAXIFD010000039        13753 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.039, whole genome shotgun sequence.
ACCESSION   DAXIFD010000039 DAXIFD010000000
VERSION     DAXIFD010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13753
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.039"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(91..1356)
                     /gene="ftsY"
                     /locus_tag="ACFOCN_000815"
     CDS             complement(91..1356)
                     /gene="ftsY"
                     /locus_tag="ACFOCN_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HFC6969993.1"
                     /translation="MFSFFRRKKKQETPAPEEAQVQETAAKAESEVTQIVENIKEEVE
                     SLTESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVG
                     EAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
                     VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPET
                     KEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNN
                     VTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKA
                     MPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRP
                     VPVRYIGVGEGIDDLRPFDARAFVDALLD"
     gene            1502..3070
                     /gene="msrAB"
                     /locus_tag="ACFOCN_000816"
     CDS             1502..3070
                     /gene="msrAB"
                     /locus_tag="ACFOCN_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional peptide-methionine (S)-S-oxide
                     reductase MsrA/peptide-methionine (R)-S-oxide reductase
                     MsrB"
                     /protein_id="HFC6969994.1"
                     /translation="MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTA
                     DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH
                     EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI
                     NEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRI
                     DGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP
                     TSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAE
                     EYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTE
                     EQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPID
                     AKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQ
                     MDAAGYGALKSKVK"
     gene            complement(3172..3657)
                     /locus_tag="ACFOCN_000817"
     CDS             complement(3172..3657)
                     /locus_tag="ACFOCN_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HFC6969995.1"
                     /translation="MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFD
                     QSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGP
                     GGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
                     V"
     gene            complement(3684..4532)
                     /locus_tag="ACFOCN_000818"
     CDS             complement(3684..4532)
                     /locus_tag="ACFOCN_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HFC6969996.1"
                     /translation="MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWA
                     AKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGG
                     AGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDN
                     EEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQN
                     EERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRD
                     IHIINS"
     gene            complement(4626..5627)
                     /locus_tag="ACFOCN_000819"
     CDS             complement(4626..5627)
                     /locus_tag="ACFOCN_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6969997.1"
                     /translation="MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERA
                     NDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPGSAP
                     VAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSP
                     GLGFLMANISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAA
                     SPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREV
                     QQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK"
     gene            5686..6366
                     /locus_tag="ACFOCN_000820"
     CDS             5686..6366
                     /locus_tag="ACFOCN_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HFC6969998.1"
                     /translation="MQENPTVWLFDLDNTLHDADAGIFTLINRAMTRYMARRLKLSES
                     AASDLRQEYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTKLHGMADTEHTLCR
                     LNGRKAVFSNGPSFYVRAVVGALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDV
                     PPECCIMVDDSADNLHQAKALGMKTVWFGAKSHALSFIDACARDMAQLARYAETLSEH
                     RQTHYNTL"
     gene            6392..6664
                     /locus_tag="ACFOCN_000821"
     CDS             6392..6664
                     /locus_tag="ACFOCN_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex protein"
                     /protein_id="HFC6969999.1"
                     /translation="MRKTFLILMTTAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYY
                     QDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR"
     gene            6719..8089
                     /gene="glmU"
                     /locus_tag="ACFOCN_000822"
     CDS             6719..8089
                     /gene="glmU"
                     /locus_tag="ACFOCN_000822"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HFC6970000.1"
                     /translation="MPQNTLNIVILAAGKGTRMYSKMPKVLHEIGGETMLGRVIDTAA
                     ALNPQNICVVVGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLAAEGRTLVLY
                     GDVPLIDVETLETLLEAAGNEVGLLTDVPADPSGLGRIIRDGSGSVTAIVEEKDADTA
                     QKAVKETNTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRA
                     SHLAAGVNNKRQLAELERIFQTGQAQELLKAGVTLHDPARFDLRGRLKHGQDVVIDVN
                     CIFEGEVEIGDNVEIGANCVIKNAKIGANSKIAPFSHLEDCEVGENNRIGPYARLRPQ
                     ARLADDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGSKTNFGAGTIIANYDGVHKH
                     KTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNVEDNKLALARARQTVIEGWVR
                     PEKDKQ"
     gene            8164..8493
                     /locus_tag="ACFOCN_000823"
     CDS             8164..8493
                     /locus_tag="ACFOCN_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HFC6970001.1"
                     /translation="MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVL
                     DANGAALQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLK
                     SEFVKKA"
     gene            complement(8565..9830)
                     /gene="efeB"
                     /locus_tag="ACFOCN_000824"
     CDS             complement(8565..9830)
                     /gene="efeB"
                     /locus_tag="ACFOCN_000824"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HFC6970002.1"
                     /translation="MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKRGETAERTA
                     ESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQ
                     GGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
                     FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPG
                     AMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHF
                     VEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQLDFAKDPEGNTTPKDSHIRLANPR
                     DPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEE
                     YISPFGGGYFFVLPGVEKGGFLGQGLLGV"
     gene            complement(10094..11260)
                     /gene="efeO"
                     /locus_tag="ACFOCN_000825"
     CDS             complement(10094..11260)
                     /gene="efeO"
                     /locus_tag="ACFOCN_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HFC6970003.1"
                     /translation="MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGS
                     VSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDK
                     MTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
                     KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFK
                     DGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGG
                     VSELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTD
                     TNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK"
     gene            complement(11257..12096)
                     /gene="efeU"
                     /locus_tag="ACFOCN_000826"
     CDS             complement(11257..12096)
                     /gene="efeU"
                     /locus_tag="ACFOCN_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter permease EfeU"
                     /protein_id="HFC6970004.1"
                     /translation="MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVL
                     ASLMCLGLGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMVLWMKKAARSMKQQLQ
                     DSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLA
                     AAVIGALIYQGGMRLNLAKFFRWTGAFLIVVAAGLLAGSLRALHEAGIWNALQDIVFD
                     SSKYLHEDSPLGVLLGGFFGYTDHPTQGEALVWLLYLIPVMTWFLCGSRPSETLTRKE
                     ELK"
     gene            12307..13632
                     /locus_tag="ACFOCN_000827"
     CDS             12307..13632
                     /locus_tag="ACFOCN_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HFC6970005.1"
                     /translation="MKKYLFRAALYGISAAILAACQSKSIQTFPQPDTSVINGPDRPA
                     GIPDPAGTTVAGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCA
                     QAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIY
                     GIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSQFPITARTTAIK
                     GRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIR
                     IGYADKNEHPYVSIGKYMADKGYLKLGQTSMQGIKSYMRQNPQRLAEVLGQNPSYIFF
                     RELTGSGNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQ
                     DTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP"
BASE COUNT         3149 a         4125 c         3534 g         2945 t
ORIGIN      
        1 cctttgaata ttactgttgt tctaaggtct agattcccgc ctgcgcggga atgacggcat
       61 cggtctgctg ttttcggacg gcatttcggc tcaatccagc agtgcgtcca caaacgcgcg
      121 cgcgtcaaac gggcgcaaat cgtctatgcc ttcgcccacg ccgatatagc ggacggggac
      181 ggggcggtcg gaggcaagcg cggcgaggat gccgcctttt gccgtgccgt cgagtttggt
      241 cacgattaaa ccggtcagcc ctaatgcgtc gtcaaaggct ttgacttggt tgacggcgtt
      301 ttgcccgatg ttggcatcaa gcacgacgat gatttcgtgt ggcgcgtcgg gcatggcttt
      361 ttgcagcacg cgtttcactt ttttgatttc ttccatcaaa tgaagctgcg tgggcaggcg
      421 gccggcggtg tcggccagca caatgtcgat gccgcgcgct ttggcggctt ggacggcatc
      481 gaagcacacg gcggcggaat cgcccgtggt ttgcgaaatc acggttacgt tgttgcgttc
      541 gccccaagct tgaagctgct cacgcgcggc ggcgcggaaa gtatcgccgg cggcaagcag
      601 cacagatttg ccctgcgctt ggaaatattt ggcgagtttg ccgatggatg tggttttgcc
      661 cgcgccgttg atgccagcaa gcatgatgac aaacggctct ttggtttcgg gcaaaaccag
      721 cggtttctct agaggcttaa tcaggtcgta caaggcttct ttcagcgcgc cgcgcaattc
      781 gttgccgtct ttcagccctt tgaggctgac gcggtcgcgc acgtctttca tcaggtattc
      841 ggtggcttcc atgcccatat cgctggtaat cagcacggtt tccagctctt cgtacaaatc
      901 ttcgtcgatt tgtccgccgc cgaacacgcc cgccagcgat ttcgccattt tgtcgcgcga
      961 tttggtcaaa ccttgtttca aacgcgccgc ccaaccgagc ttgtgttctt cagttgtcgc
     1021 aacggcttct tgaacttgcc cgacagcctc gccgacggtt tcggcaacgg cttcttttgc
     1081 cgcttcgact tgttccgctg ctttttccgc cgcttcctct gcttcagaca gcatctcggc
     1141 aacggtttcc tttacctgtt caaccgcacc gctgacggtt tcaacagccg attcgacctg
     1201 ccctttgacg ctttccgtta aagattcgac ttcttcttta atattttcaa ctatttgagt
     1261 aacttcggat tctgcttttg ctgcagtttc ctgaacttga gcctcctcgg gagccggcgt
     1321 ttcctgtttt ttcttgcgac ggaagaagct gaacattgaa ttttcctttt aattttagaa
     1381 acttgaaata gggtgtattg tagcgtattt tgcgcggcaa ggttgtctga aaatccgggc
     1441 tgtaaggttt cggcatctca aacgtctaat catgcaaacc gtccacacag gaaacattaa
     1501 aatgaaacac cgtactttct tttccctttg cgccaagttc ggctgcctgc ttgcgctggg
     1561 tgcttgttcg cccaaaatcg tcgatgccgg agccgcgacc gtgccgcaca ctttatccac
     1621 tttgaaaacc gcagacaacc gccccgccag tgtttacttg aaaaaagaca aaccgacgct
     1681 gattaaattt tgggcaagct ggtgtccttt gtgtctgtcc gaattgggac agaccgaaaa
     1741 atgggcgcaa gatgcaaaat tcagctccgc caacctgatt accgtcgcgt ctccgggctt
     1801 tttgcacgag aaaaaagacg gcgacttcca aaaatggtat gccggtttga attatcccaa
     1861 gctgcccgtc gtaaccgaca acggcggcac gatcgcccaa agcctgaata tcagcgttta
     1921 cccttcgtgg gcgttaatcg gtaaagacgg cgacgtgcag cgcatcgtca aaggcagcat
     1981 caacgaagcg caggcgttgg cgttaatccg cgacccgaat gccgatttgg gcagtttgaa
     2041 acattcgttc tacaaacccg acactcagaa aaaggattca aaaatcatga acacgcgcac
     2101 catttacctc gccggcggct gcttctgggg cttggaagcc tatttccaac gcatcgacgg
     2161 cgtggttgac gcggtatccg gctacgccaa cggcaacacg aaaaatccga gctatgaaga
     2221 cgtgtcctac cgccatacgg gccacgccga aaccgttaaa gtgacctacg atgccgacaa
     2281 actcagccta gacgacatcc tgcaatattt cttccgcgtc gttgatccga ccagcctcaa
     2341 caaacagggc aacgacaccg gtacgcaata ccgcagcggc gtgtactaca ccgaccccgc
     2401 cgaaaaagcc gtcatcgccg ccgccctcaa acgcgagcag caaaaatacc aactgcccct
     2461 cgttgttgaa aacgagccgc tgaaaaactt ctacgatgcc gaggaatacc atcaggacta
     2521 cctgattaaa aaccccaacg gctactgcca catcgatatc cgcaaagccg acgaaccgct
     2581 gccgggcaaa accaagaccg ccccgcaagg caaaggcttc gacgcggcaa cgtataaaaa
     2641 accgagtgac gccgaactca aacgcaccct gaccgaagag caataccaag ttacccaaaa
     2701 cagcgcgacc gaatatgcct tcagccacga atacgaccat ttgttcaaac ccggcattta
     2761 tgtggacgtt gtcagcggcg aacctttgtt cagctccgcc gacaaatatg attccggctg
     2821 cggctggccg agcttcacgc gcccgattga tgcaaaatcc gttaccgaac acgatgattt
     2881 cagctacaac atgcgccgca ccgaagtgcg cagccacgcc gccgattcgc atttgggaca
     2941 cgtcttcccc gacggcccgc gcgacaaagg cggactgcgc tactgcatca acggcgcgag
     3001 cttgaaattc atcccgctgg aacaaatgga cgcggcaggc tacggcgcgt tgaagagtaa
     3061 agtgaaataa gccgcaccgc cgcctaaccc gacaaaatac cgtctgaaac ctgcaacgtt
     3121 tcagacggta ttttttatcc ggcggggatt ctgtccagac ggagattttg tttagacagc
     3181 atcgccgccg ttttcaatca gccccgccaa ccgttccaac gcgaaggcga ccgcctgcgc
     3241 gcggacggat tcgcggttgc cgtcaaaacg gcgcattgct tcgcaacttc cgcccggaaa
     3301 ggcaaacccg aaccaaaccg tgccgacggg tttgctttcg ctgccgccgc ccggtccggc
     3361 gatgccggaa ataccgacgg cgtaatccgc ctgcgccacg gctttcgcgc cgcgcgccat
     3421 ctcatagacg gtttggcggc tgaccgcgcc gtgttcgagc agggtttcgg gcaacacgcc
     3481 caagcggtct tctttggctt tgttgctgta tgttacaaaa ctctggtcga accattgcga
     3541 actgcctgca acgcttgtga atgcggcggc aagcattccg cccgtacagg actcggcaca
     3601 gcttacggtt tgacgttttt tcgtcaggtt tcgggcgatg gtgtgcagcg cgtccatttt
     3661 cccactcccc tttcagacgg cgtttaagaa ttgatgatgt gtatgtcgcg ttgcgggaac
     3721 gggatgttga tattgacttt gcggaggttt tcgaccactt gttcgttcaa atcgcattgc
     3781 agcgtccagc ggtctgcttc gtttgcccaa gcccataatg tgatttcgat ggcattgtcg
     3841 cccaaggcgg tgatgtaggc ggcggcctgc cgctcttcgt tttgaacgct caaggggtgt
     3901 tcgacggcgg ctttcaacac cgcctctttc gccactttca aatcgcagtt gtaatcgacg
     3961 ccgactatca cttgggcgcg gcaaagcggc agggtggaac ggttgacgat gctgttgccc
     4021 atcaccacgc tgttgggcag cacgacttct tcgttgtcgg tcgtccgcaa agaagtctgc
     4081 accattttaa tctctcggac atatccttca aaaccgccga cgcggataaa atcgccgact
     4141 ttgaacgggc ggaacaggat aatcagcgca ccggcggcaa aattggacag ctggtctttc
     4201 aaggacaacg ccaccgccaa acccgcgccg ccgattaagg cggttacgga tgttgtggaa
     4261 acgcccaatc tgcccaatgc ggcaataatc accaaaatca ataagccgat attggcaaca
     4321 ttacacaaaa aactaatcag cgtggcatcg acctgcgcgc gcgtcatcgc cgccctcatc
     4381 acagcgacaa tgcgtttcgc cgcccatttt ccgaccaaaa aaataagcag cgcggcggca
     4441 aggttcagcc cgaacgccca cgccttttca gccagatgct cccaaccgga aacactgatc
     4501 aggtgtaaaa aatcaaattg tttgaagtcc attgttttcc tcttgatcga acatccgccc
     4561 cgtgcggcgt aatcggcaca ggtgtaaaaa tgccgtatga agccctgcgg ggcggtatgt
     4621 ttgttttatt tcaaaaccgt tctaatccaa cgggaaaccc atccgcgctg gttcgcatca
     4681 atatcgcgct gcgcgggggc ggtggtgtgc gtcggggctt gggcgaagcg gaacacgtcg
     4741 ggcaggcgcg tgtttttgac ggcggggtaa acccacattt cggacggaac cgcctgctgc
     4801 acttcccgac tttgcagcca ttgcaccagt tttgccgcca attccggctg tttcgcgccc
     4861 ttcaagaccg ccgcgccttc gacctggcgg aatacgccgc cttttaaaaa caggttgccc
     4921 gtcggcggct cgctgtattt gcctttggaa aaatacactt ccgccgccgg gctggcggca
     4981 taaccgacca ccagcggata cgcgccgccg ttgtgcgaaa agtcggtgta atacgcctcg
     5041 ctccagcctt tggcgacctt cacgccgttc tgccgcatct gtgcccacca tttgaacgcg
     5101 ccttcttcgc ccagaccgct gatgttcgcc atcaggaagc ccagccccgg ggacgacgtg
     5161 gcgggagacg gcacgaccaa taggttttta tattcggggc gggtcaaatc ctgcagggtt
     5221 tgcggcagag gaagcttttt gccttcaaac cattttttgt cgtaattgat ggacacatag
     5281 ccgtaatcga ccgccaaagc cgaaggcagc ccgaccgcga cgggggcgga tccgggttgc
     5341 gccgccgcca aaatgcccat ttcccgcgcc ttgccgatat tggcgttgtc caagccgtac
     5401 accgcgtcgg cgatcgggtt ggcgcggctc aaaatcagtt tgttgagcat ttcgttcgcg
     5461 ccgcccgcct gaataatcga caccttcgca tcgtttgccc gctcgaagcg cgcaatcagc
     5521 cctttgggca ggctgaacga cttatgcacc gccagcctga cttccgtctg cgcctgcagg
     5581 tatgccgaaa ccgccagcag cggcagcagc caaattttcc gtttcattcc gagtcctcct
     5641 ctattcgctg taaaataaca ttctaacaaa ttttcacggt tcaaaatgca agaaaacccg
     5701 accgtgtggc tgttcgacct cgacaacacg ctgcacgatg ccgacgcagg catcttcaca
     5761 ctcatcaacc gcgctatgac acgctatatg gcacgccgcc tcaaactctc cgaatccgcc
     5821 gcgtccgacc tgcgtcagga atattggcac cgctacggcg caacgctcgc cggactgcaa
     5881 atccaccatc ccgaaatcga catcgccgaa tttttacgcg aaagccatcc gatcgatgca
     5941 atcctgacca agctgcacgg catggcggat acggaacaca ccctatgccg tctgaacggg
     6001 cgcaaggcgg ttttttccaa cggtccgtcg ttttacgtcc gtgccgttgt cggcgcactc
     6061 ggtttggaaa accgtttcga cgcactgttc ggcacggatg atttcggact gctgtacaaa
     6121 cccaatccgc aagcgtatct caatgtctgc cgccttttgg acgtaccgcc cgaatgctgc
     6181 attatggtgg acgacagcgc ggacaacctg catcaggcaa aagcattggg catgaaaacc
     6241 gtctggttcg gtgcaaaatc ccacgcgctg tcctttatcg acgcctgcgc acgcgatatg
     6301 gcgcaactgg ctcggtatgc agaaactttg tcagaacacc gccaaactca ttacaatacc
     6361 ctctaaatcc tgaaaatacg aaagaaaagc catgcgtaaa accttcctta tcctgatgac
     6421 caccgccgcc cttttgtcgg gctgcgcgtg ggaaacttat caagacggca acggcaagac
     6481 cgccgtccgt caaaaatatc ccgccggcac gcccgtttat taccaagacg gcagctactc
     6541 gaaaaatatg aactacaacc aataccgtcc cgaacgccat gccgtgttac ccaaccaaac
     6601 cggcaacaac gccgacgaag agcatcgcca acactggcaa aagcccaaat ttcaaaaccg
     6661 ataaacccac cctatgccgt ctgaagccct ttcagacggc attgcacagg aaaacgctat
     6721 gccgcaaaac actttaaaca tcgtcatcct cgccgccggc aaaggcacgc gcatgtattc
     6781 caaaatgccc aaggttttgc acgaaatcgg cggcgaaaca atgctcgggc gcgttatcga
     6841 caccgccgcc gcgctgaatc cgcaaaacat ctgcgtcgtc gtcggccacg gcaaagagca
     6901 agttttagac accgtcaaac gcgatgtcgt ctgggttgaa caaaccgaac agctcggcac
     6961 cggccacgcc gtcaaaaccg ccctgcccca ccttgccgcc gaaggccgca cgctggtgtt
     7021 gtacggcgac gttcctttaa ttgacgttga aaccctcgaa accctgctcg aagccgcagg
     7081 caacgaagtc gggctgttga ccgacgtgcc cgccgacccg tcaggtttgg ggcgcatcat
     7141 ccgcgacggc agcggcagcg taaccgccat tgtcgaagaa aaagacgccg ataccgccca
     7201 aaaagccgtg aaagaaacca acaccggcat cctcgtcctg cccaacgcca aactggaaaa
     7261 ctggctgaac agcctttcca gcaacaatgc ccaaggcgaa tactacctga ccgacctcat
     7321 cgccaaagcc gttgccgacg gtattaaagt tcatcccgtc caagtccgcg cctcccacct
     7381 cgccgccggc gtgaacaaca aacgccagct cgccgaactc gaacgcatct tccaaaccgg
     7441 acaggcgcaa gaattgctca aagcaggcgt taccctgcac gacccggcac gtttcgattt
     7501 acgaggccgt ctgaaacacg gacaggatgt cgtaattgat gtgaactgta tctttgaagg
     7561 cgaagtcgaa atcggcgaca acgtcgaaat cggcgcaaac tgcgtcatca aaaacgccaa
     7621 aatcggtgca aacagcaaaa tcgccccctt ctcccacctc gaagactgcg aagtcggcga
     7681 aaacaaccga atcggcccgt acgcccgcct gcgtccgcaa gcccgccttg cagacgacgt
     7741 acacgtcggc aacttcgtcg aaatcaaaaa cgccgccatc ggcaaaggca ccaaagccaa
     7801 ccaccttacc tacatcggcg atgccgaagt cggcagcaaa accaacttcg gcgccggtac
     7861 gattattgcc aactacgacg gcgtgcacaa acacaaaacc gtcatcggcg acgaagtgcg
     7921 catcggttca aactgcgtcc tagtcgcccc cgttaccctc ggcaacaaag taaccacagg
     7981 cgcgggcagc acgattaccc gcaatgtcga agacaacaaa ctcgccctcg cccgcgcccg
     8041 ccaaaccgtc atcgaaggct gggtgcgtcc tgaaaaagac aaacaataaa gctatgccgt
     8101 ctgaagccgg tttcaggttt cagacggcac cccaaaacaa acatccgata aggacggcaa
     8161 accatgtcat tacccccttg cccgcaatgc gcctccgaat acacctacga agacggcgga
     8221 caatacatct gccccgaatg cgcccacgaa tggaatgaaa ccgaatccgc cgccgacctt
     8281 gcggctcaag tgctcgatgc caacggcgcg gcactgcaaa acggcgatac cgtcatcctc
     8341 atcaaagacc tcaaggtaaa aggcagctcg atggtgatca aacaaggtac aaaagtcaaa
     8401 ggcatacgcc tgcaggaagg cgatcacaac atcggctgca aaatcgacgg cagcgcgatg
     8461 aatttaaaat ccgaattcgt caaaaaagcc tgaccgccca aaaacaagaa acgccgtccg
     8521 aacccgtttg gcaaggttcg gacggcgttt tttatatggc ggatttatac gcccagcagc
     8581 ccttgcccca aaaagccgcc tttttccacg ccgggcaaga cgaagaaata gccgccgccg
     8641 aaggggctga tgtattcttc cagcggttcg ccgttgagga ggttttgcac gaagatgaat
     8701 ccgtcggcaa ggtttgcctg atagcagacg aacaccagtc cgacatcaag ctgtccgctt
     8761 gaggcaagtc cgcgcgaata gctgtaggcg cggcggaaga ggcggtgttt tttgaggaat
     8821 tcgggatcgc gcggattcgc caggcgtata tggctgtctt tgggcgtggt attcccctcg
     8881 gggtctttgg caaaatccag ttggtcggct tcttttttgc cgtccatcgg cgcaccgctg
     8941 tatttgcgcc gcccgaaaat gtcggtttgc tcttgaagcg gcgtcctgtc ccaaaactcg
     9001 acaaagtggc ggataaggcg gactgcctga tagctgccgt ttttcgccca ctccggttcg
     9061 tcgaggctgt tggcggccac acccgtccac aaaacctcgt cggcggtttt ggggtcggaa
     9121 actttggggt tgcccgtgcc gtcgcggaag cccaacaggt tgcgcgccgc catcgcgccg
     9181 ggttcggatt taggctgcca cccgtcgata ctccagcgga taacggcggt ttggacggtg
     9241 tgtttgatga tgtcgcgcag ggcggcttgg caggtttcgg gggtgaaggc acagatttgc
     9301 aggctcaaat cgccgtcgca ccagcttttt tgcagcttat cgttggagaa gtcgcgcatt
     9361 tcctgcaaat gaatcggttt tttgtctttg agtccgaacc ggccgtcaaa caggctgctg
     9421 cccaccccca cggtaacggt caacccgtcg gggttgaagg ctttgcccaa aatgccgctg
     9481 ccggctggcg gaagtttgtc gtcgccgtct tggtattcgc cgccttgggt gagaaactcg
     9541 atgcgggcgg tcagcgtgcg gaacaggttt tccagctgct tggcactttg tgcggttacg
     9601 tcgaaggcgc acataatcga aaacgcctgc tgcggcgtaa cgatgcctgc ctgatgttcg
     9661 ccgtagcagg gataggcttg gggcgagtgt tggctttcgg cggtgcgttc ggcggtttcg
     9721 ccccgttttt tgccgccgag ataacctccg attgcgccga ctgctccggc tgcgatcgcg
     9781 gttttaaaaa gagtgcgcct ggtcggttgt gcgggttggt ttttgctcat ggtgtttcct
     9841 tcaatatccg tgcagcagga tgggtatccc tgcacgccgt ttttccatta accgatagcg
     9901 gcaggttgaa atcccgccct gcaatatatg gcggatatag tggattaaca aaaatcagga
     9961 caaggcgacg aagccgcaga cagtataaat agtacggcaa ggcaaggcga ggcaatgccg
    10021 tactggtttt tgttaatcca ctataaaact tcagacggta tctgccgcca aataccgtct
    10081 gaacgcttgc ggcttatttc aagccgagta tgccgcgaag ttgggcaagg tcttcggcaa
    10141 gcgcgttaat agaggcctgt aacgctttgc ggtcggcttc gcccagcttg tcgtaggttt
    10201 caaaaccgtc tttagtccgg tatttcgcca gaatttcgtt gacctgtttg aagttggtat
    10261 cggttttttc caacaaggct ttgtttttgg cctcgatcag cggacggaac aaatcgacga
    10321 tttttttaga tccgtccaca ttggcttgga agtcgctcaa atcggtgtgg ctgtaccggt
    10381 cttcttcgcc gctgatttta ctgcccgcca cttcttcaat cagttcggac acgccgccga
    10441 ccaccttgcc cggaggaaac gccaatgcgt cgatttcttt ttgcagggct tcgacatcgg
    10501 tcatcagttt cgctgcaatt tccttcacgc cggacacgtc tttttccacc caaagggcgt
    10561 attcgatacg gtggaagccg gtaaatccgg catctttcgc gccgtctttg aagtcgtctt
    10621 cacgcgcatc gatgacgggg tcgagttcgc tgaaaagctc ggcaatcggt tcgatgcgtt
    10681 cgtaatggac gcgggtgtcg gcaaacaggg atttcgcctt ttcaatgtcg cctgctttga
    10741 cggcttcggt aaaggttttg gttttcgcca ccagctcttt aacctcgcct tgaacgtagg
    10801 ctttatagtc ggcgagcggt tgggacagtt tttccaaatc cgcttcgttg gcggtgtctt
    10861 taaagccgct gtcggttacc accagcttgc cgcgcggatt ggtcaaaaga ccgcaagtca
    10921 tttcgtattc gcccggcaac agggtgacgg tcattttatc ggaaagtccg ggggcgatgt
    10981 tttcgcgctc gtccaccacc atcacgcctt tcaggatttc ccattcgagc ttgcggccgc
    11041 tgttgttttt aatattgaac acaacctgtc cgctcggcac ggtcagttcc atcggttcgc
    11101 aggcattgtc gttgacggcg atactgaccg aaccgccctc gttggcggtt tgcgcctcac
    11161 cggacgcggc cggcgcagct ttctccgcct ccggcggctg gcacgcggtc aaacctaagg
    11221 caagcatcac ggacaatgcg gtcaaattga attttctcat ttcagctcct ctttacgggt
    11281 taaagtttca gacggcctgc tgccgcacaa aaaccaagtc atgacgggaa taaggtacag
    11341 cagccaaacc aaggcctcgc cctgcgtcgg atggtcggta tagccgaaaa atccgccgag
    11401 cagcacacct aacggactgt cttcgtgcaa atattttgat gagtcgaaca caatgtcctg
    11461 aagcgcgttc caaatgcctg cttcgtgcag cgcgcgcagc gagccggcaa gcaggccggc
    11521 ggcaacgaca atcagaaacg cccccgtcca acggaaaaac ttcgccagat tcaggcgcat
    11581 cccaccctga taaatcaacg cgccaatcac ggcggcagcc aaaacccccg ctaccgcacc
    11641 ggccggcatc tgccaagtcg ggctctgttt gaatacggca agcagaaaaa aaacgctctc
    11701 caaaccttcg cgcgccacgg caagaaacgc cataccgacc aaggcccatc cttgtccgct
    11761 gccccggttc aaagccgcct gcacagaatc ctgaagctgc tgcttcatcg aacgcgccgc
    11821 ctttttcatc cataaaacca tataagtcag catcgcgacg gcaaccaggc cgataatgcc
    11881 gacgacgaac tcctgctgct tttggggaat ctcgcccgtt gccgaatgga tgccgtaccc
    11941 cagccccaaa cacatcaaag aagcaaggac gaccccgaac cagaccttag gcatcagttt
    12001 ggaatgtccg gactgtttca gaaaaccggc aacgatgccg acaatgagcg cggcttcgat
    12061 accctcgcgc aacataatta aaaaagcgac cagcataaac gcgaacgaac aaggatgatg
    12121 aataatatat tatcggaata ttttcattgc ttgtaaatac aaatgcaagt tatttttatc
    12181 tgcagtaccg cgcggcggaa agttccgcag gctgcagctg cgccctgtgt taaaatcccc
    12241 tctccacggc tgccgcaacg ccgcccgaaa ccatctttct tattactgcc ggcaacattg
    12301 tccattatga aaaaatacct gttccgcgcc gccctgtacg gcatctccgc cgccatcctc
    12361 gccgcctgcc aaagcaagag catccaaacc tttccgcaac ccgacacatc cgtcatcaac
    12421 ggcccggacc ggccggccgg catccccgac cccgccggaa cgacggttgc tggcggcggg
    12481 gccgtttata ccgttgtgcc gcacctgtcc ctgccccact gggcggcgca ggatttcgcc
    12541 aaaagcctgc aatccttccg cctcggctgc gccaatttga aaaaccgcca aggctggcag
    12601 gatgtgtgtg cccaagcctt tcaaaccccc gtccattcct ttcaggcaaa acagtttttt
    12661 gaacgctatt tcacgccgtg gcaggttgca ggcaacggaa gccttgccgg tacggttacc
    12721 ggctattacg aaccggtgct gaagggcgac gacaggcgga cggcacaagc ccgcttcccg
    12781 atttacggta ttcccgacga ttttatctcc gtccccctgc ctgccggttt gcggagcgga
    12841 aaagcccttg tccgcatcag gcagacagga aaaaacagcg gcacaatcga caataccggc
    12901 ggcacacata ccgccgacct ctcccaattc cccatcactg cgcgcacaac ggcaatcaaa
    12961 ggcaggtttg aaggaagccg cttcctcccc taccacacgc gcaaccaaat caacggcggc
    13021 gcgcttgacg gcaaagcacc gatactcggt tacgccgaag accctgtcga actttttttt
    13081 atgcacatcc aaggctcggg ccgtctgaaa accccgtccg gcaaatacat ccgcatcggc
    13141 tatgccgaca aaaacgagca tccgtatgtt tccatcggaa aatacatggc ggataagggc
    13201 tacctcaaac tcggacaaac ctccatgcag ggcattaagt cttatatgcg gcaaaatccg
    13261 caacgcctcg ccgaagtttt gggtcaaaac cccagctata tctttttccg cgagcttacc
    13321 ggaagcggca atgacggccc tgtcggcgca ctgggcacgc cgctgatggg ggaatatgcc
    13381 ggcgcagtcg accggcacta cattaccttg ggtgcgccct tatttgtcgc caccgcccat
    13441 ccggttaccc gcaaagccct caaccgcctg attatggcgc aggataccgg cagcgcgatt
    13501 aaaggcgcgg tgcgcgtgga ttatttttgg ggttacggcg acgaagccgg cgaacttgcc
    13561 ggcaaacaga aaaccacggg atatgtctgg cagcttctgc ccaacggtat gaagcccgaa
    13621 taccgcccgt aaaccggaaa acaatgccgt ctgaagccca tccctaggca atcgggcgca
    13681 ttaaggcgaa gttttgcgat accgcaggca caaaattcct ttcttatttg acggaattat
    13741 agtggatcaa att
//
LOCUS       DAXIFD010000040        13588 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.040, whole genome shotgun sequence.
ACCESSION   DAXIFD010000040 DAXIFD010000000
VERSION     DAXIFD010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13588
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.040"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(64..624)
                     /gene="sodC"
                     /locus_tag="ACFOCN_000828"
     CDS             complement(64..624)
                     /gene="sodC"
                     /locus_tag="ACFOCN_000828"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC"
                     /protein_id="HFC6970006.1"
                     /translation="MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPV
                     NGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAG
                     GHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
                     TGGDNHSDHPAPLGGGGPRMACGVIK"
     gene            complement(1041..2081)
                     /gene="mutY"
                     /locus_tag="ACFOCN_000829"
     CDS             complement(1041..2081)
                     /gene="mutY"
                     /locus_tag="ACFOCN_000829"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HFC6970007.1"
                     /translation="MNTPIPFSERLIRWQKQHGRHHLPWQVKNPYCVWLSEIMLQQTQ
                     VATVLDYYPRFLEKFPTVQTLAAAPQDEVLSLWAGLGYYSRARNLHKAAQQVVRQFGG
                     TFPSERKDLETLCGVGRSTAAAICAFSFNRRETILDGNVKRVLCRVFARDGNPQDKKF
                     ENSLWTLAESLLPSENADMPAYTQGLMDLGATVCKRTKPLCHQCPMADICEAKKQNRT
                     AELPRKKTAAEVPTLPLYWLIIRNRNGAILLEKRPAKGIWGGLYCVPCFESLNGLSDF
                     AAKFSLTMADMDEQTALTHRLTHRLLMITPFEGQMPSESPSDGIWIKPTHLKDYGLPK
                     PLEIYLNGNRLE"
     gene            2244..3285
                     /locus_tag="ACFOCN_000830"
                     /pseudo
     CDS             2244..3285
                     /locus_tag="ACFOCN_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225132.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
     gene            complement(3543..4181)
                     /locus_tag="ACFOCN_000831"
     CDS             complement(3543..4181)
                     /locus_tag="ACFOCN_000831"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HFC6970008.1"
                     /translation="MSKLTPREILTAGAVVPVMAIDDLSTAIDLSHALVEGGIPTLEI
                     TLRTPVGLDAIRLIAKEVPNAIVGAGTVTNPEQLKAVEDAGAVFAISPGLHESLAKAG
                     HNSGIPLIPGVATPGEVQLALEHGIDTLKLFPAEVVGGKAMLKALYGPYADVRFCPTG
                     GISLATAPEYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAALKPKA"
     gene            complement(4362..6197)
                     /gene="edd"
                     /locus_tag="ACFOCN_000832"
     CDS             complement(4362..6197)
                     /gene="edd"
                     /locus_tag="ACFOCN_000832"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HFC6970009.1"
                     /translation="MNTTPIHSKLAEITGRIIERSRPTREKYLAKIRSAKQMGRLERN
                     QLGCSNLAHGYASMPKSIKIEMLQDTVPNLGIITAYNDMVSAHQPFKDFPDQIKDEAQ
                     KNGATAQVAGGTPAMCDGITQGYAGMELSLFSRDVIAMSTAVGLSHQMFDGSLFMGVC
                     DKIVPGLMIGALSFGHIPGIFVPAGPMSSGIGNKEKARTRQLFAEGKVGRNELLKSEM
                     GSYHSPGTCTFYGTANSNQMMMEMMGVHLPAAAFVHPYTDLREALTRYAAGHLARGIK
                     NGTIKPLGEMLTEKSFINALIGLMATGGSTNHTMHLVAMARAAGVILNWDDFDEISSI
                     IPLLIRVYPNGKADVNHFTAAGGLPFVIRELLDAGLLHDDVDTVVGHGMRHYTKEPFL
                     IDGKLEWREAPETSGNDDILRKAGNPFSPDGGLRLMKGNIGRGVIKVSAVREGCRIIE
                     APAIVFNDQREVLSAFERGELERDFVCVVRYQGPRANGMPELHKLTPPLGILQDRGFK
                     VALLTDGRMSGASGKVPASIHMTPEALMGGNIAKIRTGDLIRFDSVSGELNVLIDEAE
                     WNAREVEHIDLGANQQGCGRELFAGFRSLTGGAETGAMSFGGEFA"
     gene            6713..8158
                     /gene="zwf"
                     /locus_tag="ACFOCN_000833"
     CDS             6713..8158
                     /gene="zwf"
                     /locus_tag="ACFOCN_000833"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HFC6970010.1"
                     /translation="MSTQTNFDLVLFGATGDLAMRKLLPCLYQAHVAGLLHPEGRILG
                     VSRSELDTEGFLAKVETSSKIHVKENFSDEAWASFVERLAYLKVDVTQPDDFAALGDL
                     VKARKETDNVVIYLSTAPKFFAQTCENLAKIGLNADNVRVVLEKPLGTDLASSQQINT
                     DVARYFKEGQIYRIDHYLGKESLQNLLALRFANVMFEPLWNNKYIESVQLTIAEQLGV
                     EERGEFYDITGALRDMVQNHLMQMLCMTAMEAPASLDADAVRDEKVKVIKSLKPLTVE
                     SVNENVVRGQYTAARGMNGYLEEINVPQDSFTETYVAIKAEIENERWKGVPFYLRTGK
                     RMAGKVAEIVLNFKDLNSHIFEGSRTAPNRLVIELQPYESVRLYTQMKTPGAGNKVET
                     VPLATDLGKALESRRAEAYERLLLDVINGKLALFNRRDELEAAWEYVMPILENWTNNT
                     TPPHGYGAHSWGPEAARELLARDGHKWHEEQ"
     gene            8438..9133
                     /gene="pgl"
                     /locus_tag="ACFOCN_000834"
     CDS             8438..9133
                     /gene="pgl"
                     /locus_tag="ACFOCN_000834"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HFC6970011.1"
                     /translation="MFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRS
                     PIAFFNALSQKDLDWKNVGITLADERIVPTVHADSNTGLVREYLLKNKAEAAMWIPMV
                     EDGKTETELHPDAVVDYALKHYKQPDVLVLGMGNDGHTASIFPKAPQFQTAIDGSAGV
                     ALVHTTPVTAPHERVSMTLDAIAHTGHVFLAIRGEEKKAVFDQAAQGENREYPINLVL
                     NHQGVNCHVFYAE"
     gene            9114..10100
                     /locus_tag="ACFOCN_000835"
     CDS             9114..10100
                     /locus_tag="ACFOCN_000835"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - D-glucose binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HFC6970012.1"
                     /translation="MSSTPNKQAGYPRLVADIGGTNARFALETAPRVIEKAAVLPCKD
                     YDTVTDAVRAYLNQSGATAVRHAAFAIANPILGDWVQMTNHHWAFSIETTRQTLGLDT
                     LILLNDFTAQALAVTQTSSKDLMQVGGQKPVEFAPKAVIGPGTGLGVSGLVHSHAGWV
                     ALAGEGGHTSFPPFDDMEVLIWQYAKNKYGHVSAERFLSGAGLSLVYEALAAKQKAKP
                     AKLMPSEITEKALSGASPLCRQTLDIFCAMLGTVASNLALTLGARGGVYLCGGIIPRV
                     LEYFKTSPFRSRFENKGRFEAYLAAIPVYVVLSEFPGISGAAAALDNHLRNV"
     gene            10150..10998
                     /gene="hexR"
                     /locus_tag="ACFOCN_000836"
     CDS             10150..10998
                     /gene="hexR"
                     /locus_tag="ACFOCN_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HFC6970013.1"
                     /translation="MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASV
                     SQPTVIRFCRSLGYKGLPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAA
                     ASLLGERRFLKESELENAIATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYV
                     DTHTQLMAASVLSDQDVLVAISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLA
                     DCVLSVATQENAELYTPMVSRLLQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKH
                     IDYDKD"
     gene            11119..12765
                     /gene="pgi"
                     /locus_tag="ACFOCN_000837"
     CDS             11119..12765
                     /gene="pgi"
                     /locus_tag="ACFOCN_000837"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6970014.1"
                     /translation="MKHFHDLPAWPKLWNHFDDSKTLHMREMFEQDPQRAERYWLQVG
                     GLTLDYSKNRINDETMSLLFELAREAGVPERMRQMFHGEKINTTENRAVLHVALRNRT
                     NSPIVVDGEDVMPKVNRVLQRMGEFAHEVRSGSWLGYTNQVITDVVNIGIGGSDLGPL
                     MMCTALKPFGHPRLNMHFVSNVDGSQLRDVLSKVHPETTLFIIASKTFTTQETLTNAL
                     TAREWFLNHAGDESAVAKHFVAVSTNQKAVAEFGIDTANMFEFWDWVGGRYSLWSAIG
                     LPIMLYLGEENFIEMLNGAHLMDQHFINTPLERNLPAILALIGIWYINYYGGGSHVIA
                     PYDQHLHRLPKFIQQLDMESNGKQVTLDGKAVGHETSPIIWGETGINGQHAFFQLLHQ
                     GTHITPIDLIASLEKRSNLPGHHEILLANVFAQAEAFMRGKTPDEVRAELKAQGMDEA
                     RIEELVPHKTFSGNRPTNLILMDKVNPRNMGSLIAMYEHKTFVQGIIWGINSFDQWGV
                     ELGKQLAKTILGELTGETGPQKHDSSTERLIRLYLQTNRK"
     gene            12908..13330
                     /locus_tag="ACFOCN_000838"
     CDS             12908..13330
                     /locus_tag="ACFOCN_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6970015.1"
                     /translation="MALIKEPLDKAKQRNEELEAAEEAAAQEALGREQEVDRVSEWEE
                     RYKLSRSEFEQFWKGLPQTVQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKFSEL
                     ACKTAETEARLEELHNRKKALIDEMAREADKKELPKRL"
BASE COUNT         3301 a         3437 c         3688 g         3162 t
ORIGIN      
        1 gctaaatatc tagcaaaaaa gtgcggtcaa aattcaccgc acttttcgtt tcgaacaatc
       61 gaattattta atcacgccac atgccatacg tgggccgcca ccgccaagtg gagctggatg
      121 atcggagtga ttatcaccac ccgtgtggat cataatagag tgaccgcgaa catcatctaa
      181 atgtttaaga cgtggtgcta aaacaggatt tgttgctgtg ccatcatgca atacagttaa
      241 tgcaggtaaa tcacctaagt gtgcatcatc ttgccatggg taaccatgtt gttttgcacc
      301 tttaggatcc cagtgaccgc ctgcgcctaa accagctgtc aatttacctt ctttttcttt
      361 tggctcacag cttgggtttt catggatgtg gaaaccatgt aagccttcgc ttaatccttg
      421 taaatcaggg gtaaacacaa gaccatagtt agattcagta atagtcactg tacccacatc
      481 tttgttaccg tttactggat caagttgttg cactttcact tcaatagaag cacctttagg
      541 tatcgtatta tgctcgtgtg cttgcgcaac accaactgaa catactgcac taaccgctag
      601 tgctaataag gttttcatat tcattgcaat ctcctttatt gcagtaaaaa ctcgcgacta
      661 ttttagtcaa ttttgtttta aaagccgata aatttttacg aaaattttac attaattgtt
      721 atttgcagaa aattagaacc cgttatcacg tcttggataa atgccaaaac cattgtgatt
      781 cagagaatta aaaagaaaaa tttcggaatc ctcatccttt tctgaaacct gattgcggta
      841 tccatggctt tgtctttgtc atttaagttt gtgttcatgt ttttgacctt ctttgctttt
      901 taaatccttt ttaaattgcc gacttcttcc gttccaaatg tcccatttga acattatccc
      961 gccgcctaaa atacgaccca aattcatcgg ttgttcttgc tgcgatacct gcaaacaaca
     1021 gttcaatggg tttattttgt ttattctaac ctattaccgt ttaaataaat ttccaaaggc
     1081 ttgggcaggc cgtaatcttt caaatgcgtc ggctttatcc aaatgccgtc tgaagggctt
     1141 tcagacggca tttgtccttc aaacggcgta atcatcagca accggtgcgt cagccggtgg
     1201 gtcagggcgg tttgttcgtc catatctgcc atggtcaggg agaatttggc ggcaaagtcg
     1261 gaaagcccgt tcaaactttc aaaacacggc acgcaataca gcccgcccca aatgcctttg
     1321 gcggggcgtt tttccagcaa aatcgcgccg ttccggttgc ggataatcag ccagtaaagc
     1381 ggcagggtcg gtacttcggc ggcggttttt ttgcgcggca gctcggcggt gcggttttgc
     1441 ttttttgctt cgcagatgtc cgccatcggg cattggtggc acaagggttt cgtccgtttg
     1501 cacacggttg cgcccaaatc catcaaacct tgtgtatagg caggcatatc ggcgttttca
     1561 gacggcagca ggctttcggc aagtgtccag agcgagtttt caaatttttt gtcctgcgga
     1621 ttgccgtcgc gggcgaacac gcggcagagt acgcgtttga cgttgccgtc caaaatggtt
     1681 tcgcggcggt tgaaggagaa ggcgcaaatg gcggcggcgg tgcttctgcc tacgccgcag
     1741 agcgtttcca agtctttgcg ttccgatgga aacgtgccgc cgaattgcct gacgacttgt
     1801 tgcgcggctt tgtgcaggtt gcgcgcgcgg ctgtaatagc ccaagcccgc ccacaacgac
     1861 aacacttcgt cttgcggcgc ggcggcaagc gtctgaacgg tcgggaattt ttctaagaaa
     1921 cgcggatagt agtccaacac ggtggcgacc tgcgtttgct ggagcatgat ttcggaaagc
     1981 cagacgcaat aagggttttt gacctgccaa gggaggtggt ggcgaccgtg ttgtttttgc
     2041 cagcggatga gccgttcgga gaaggggatg ggtgtgttca ttaatatcaa tcggtggttt
     2101 tatttatatt taaaacagta tgttattgta taacattgtg aaaataattc ttattgactt
     2161 attttttgta ggggtatata actcatataa agaaacttta ttgcggtatt gaaattattt
     2221 atcaacaagc aaggagtatc agcatgaaag caatggttta tcacggcgca aacgacatcc
     2281 gttttgaaga aaaaccccgt ccgcagatta tcgatccgac cgatgcggtg gtgaaaatcg
     2341 tcaaaaccac gatttgcggt accgatttgg gtatttggaa aggcaaaaaa aaccgaagtc
     2401 gccgacggtc gtattctcgg tcatgaaggc atcggtattg tagaagaagt cggcgaggct
     2461 gtaaaaaaca tcaaagtcgg cgataaagtc attatttcat gcgtcagcaa atgctgtact
     2521 tgcgacaact gcaaaatcca actttattcg cattgctgca acggcggctg gattttgggc
     2581 tacatgattg acggcacgca ggcagaatac gtccgcacgc cttatgccga caacagcctc
     2641 gtgccgctgc ccgacaacgt caacgaagaa gtcgccctgt tgttgagcga cgctttgccg
     2701 accgcacacg aaatcggcgt gcaatacggc gatgtcaaac ccggcgacac cgtattcatc
     2761 gcaggtgccg ctcctgtcgg tatgtccgcc ttgttgaccg cccaactgta tagccccgcc
     2821 gccattatcg tgtgcgatat ggacgaaaac cgtttgaaac tggcgaaaga gttgggcgcg
     2881 acccatacca tcagccccgc ctcaggcgat gtctccaaac aagtttttgc cattgtcggc
     2941 gaagacggcg tagattgtgc catcgaagcc gtcggtattc ctgcgacttg gaatatgtgc
     3001 caagacatcg tgaaaccggg cggtcatatc gccgttgtcg gcgtacacgg ccaatccgtt
     3061 gatttcaaac tggaaaaact ctggattaaa aacctcgcca tcactaccgg tttggtcaat
     3121 gccaatacta ccgaaatgct gatgaaggca atttccagca gctcagtcga ttacaccaaa
     3181 atgatgaccc accatttcaa attcagcgaa ttggaaaaag cctacgacgt gttcaaacac
     3241 gccgccgaaa accaagcgat gaaagtggtt ttggaagcgg attaatcggc cttgaatcag
     3301 ttgttttttt aagcggatgc cgtctgaatg cgtttcagac ggcatttttt cagccgcgta
     3361 gtatgggctg tccggctgct gtcgaatgaa ctgaacgtta tttttattat gcggaaggcg
     3421 gatgggcatt ttaggggcgg tatgtctgat cagtgctgcc gtgtatgccg actgtgccct
     3481 caatcggcaa aatgccgtct gaaacgggaa aggtttttca gacggcattt ttacgatgcg
     3541 aatcaggctt tgggtttcaa cgccgccgct tctttggcga ggcgggtgat ggtgtcccag
     3601 tctttgtttt tcacggcttc tttcggtgtc agccaagagc cgccgacgca caggacgttg
     3661 ggcagtgcca agtactcggg cgcggtggcg aggctgatgc cgcctgtcgg gcagaagcga
     3721 acatcggcgt aaggaccgta cagggctttg agcatggctt tgccgccaac gacttcggca
     3781 gggaagagtt tgagggtgtc gatgccgtgt tctaaagcca gttggacttc gcccggggtg
     3841 gcaacaccgg gaatcagggg gatgccgctg ttgtggccgg ctttggcgag ggattcgtgc
     3901 agccccgggc tgatggcgaa aaccgcgcct gcgtcttcga cggctttgag ctgttcggga
     3961 ttggttaccg tacccgcgcc gacgatggcg ttgggcactt ctttggcaat caggcggatg
     4021 gcgtcgaggc cgacaggggt gcgcagggtg atttcgaggg tagggatgcc gccttcgaca
     4081 agggcgtggg acaaatcgat ggcggtgctt aagtcgtcaa tcgccattac cggcacaact
     4141 gcgccggcgg tcaaaatttc gcggggggtc agtttggaca tttcggttct ccgggtggaa
     4201 tggggtattt tattaagatg ggacaggttg taggtcggat tcaagaaacc gacatcttgg
     4261 acggctgtgt cggattcgag aatccgacct acgtctatct taaaacgctt gaataatttt
     4321 tcagacggcc ttcggtctga aaaggccgtc tgaaacgcac atcaggcaaa ttcgccgccg
     4381 aagctcatcg cgccggtttc cgcgccgccg gtcaaactgc ggaagccggc gaagagttcg
     4441 cgaccgcagc cttgttggtt cgcgcccaag tcgatgtgtt cgacttcgcg ggcgttccat
     4501 tcggcttcgt caatcaggac gttgagttcg ccgctaacgg agtcgaagcg gatcaggtcg
     4561 ccggtacgga ttttggcgat gttgccgccc atcagggctt cgggtgtcat gtggatggag
     4621 gctggaactt tgccggacgc gccggacata cgaccgtcgg tcagcagtgc cactttgaag
     4681 ccgcggtctt gcaggatgcc caaaggcggg gtcagtttgt gcaattcggg cataccgttg
     4741 gcacgcgggc cttggtagcg gacgacgcag acgaaatcgc gttccaactc gccgcgttca
     4801 aatgcggaca atacttcgcg ttggtcgttg aacacgatgg caggtgcttc gatgatgcgg
     4861 cagccttcgc gcacggcgga cactttaatc acgccgcgac cgatgttgcc tttcatcagg
     4921 cgcagaccgc cgtcggggga gaacgggttg ccggctttgc gcaggatgtc gtcgttgccg
     4981 ctggtttcgg gggcttcgcg ccattcgagt ttgccgtcga taaggaaagg ctctttggtg
     5041 tagtggcgca taccgtgtcc gacaacggta tcgacatcgt cgtgcaacag gcctgcgtcc
     5101 agcaattcgc ggataacgaa aggtagaccg ccggcagcgg taaagtggtt tacgtcggct
     5161 ttgccgttgg ggtacacacg gatcagcaat gggatgatgg aagaaatttc gtcaaagtcg
     5221 tcccagttca aaatcacgcc ggcggcgcgt gccatggcaa cgaggtgcat ggtgtggttg
     5281 gttgagccgc cggttgccat caggccgatt agggcgttaa tgaaggattt ctcggtcaac
     5341 atttcgccca atggtttaat cgtgccgttt ttgatgccgc gtgcgaggtg tccggcggca
     5401 tagcgggtca gggcttcacg caggtcggtg taagggtgga cgaaggcggc ggcaggcagg
     5461 tgcacgccca tcatttccat catcatttgg ttggagtttg ccgtgccgta gaaagtgcag
     5521 gtgcccgggc tgtggtaaga acccatttcg cttttcaaaa gttcgttgcg tccgaccttg
     5581 ccttcggcga aaagctggcg ggtgcgggct ttttctttgt tgccgatacc gctggacatc
     5641 gggcctgcgg ggacgaagat acccggaata tggccgaaag acaacgcacc gatcatcaaa
     5701 ccgggaacga ttttgtcgca cacgcccata aacaggctgc cgtcaaacat ttgatgagac
     5761 agaccgacag cagtactcat ggcaattacg tcgcgggaga acagcgacaa ttccatgccg
     5821 gcatagcctt gggtaatacc gtcacacatg gcgggcgtac cgccggcaac ttgcgcggtt
     5881 gcgccgtttt tctgcgcttc gtctttgatt tggtcaggga agtctttaaa cggctggtgt
     5941 gcggaaacca tgtcgttgta ggcggtgatg atgcctaagt tgggaacggt gtcctgaagc
     6001 atttcgattt tgatgctttt gggcatggag gcgtagccgt gcgccaaatt gctgcagccg
     6061 agttggttgc gctctaagcg tcccatctgt ttggcactac ggattttcgc cagatatttt
     6121 tcacgcgtcg gacggctgcg ttcaataatg cgcccggtga tttcggcgag tttggagtgg
     6181 ataggagtag tgttcacggt cggtctcctg tcggaacggg gggtattggg gatttgtttg
     6241 tgcgtttctg atttttgtat cgggtattca gacggtgagt atagtggatt aacaaaaacc
     6301 agtacggcgt tgcctcgcct tgccgtatta tctgtactgt ctgcggcttc gtcgccttgt
     6361 cctgattttt gttaatccac tatattttaa aaggtatacc gtctgaaagt gggaagcggg
     6421 tgttattata gtacaaaatt tgtaattttg ttacaaaaaa atcagacatc gaaaagaaat
     6481 ttgatttaaa tcgcagaatc ttccgattgt tgtaacggaa taggggaaac ctgcccgatt
     6541 tttggactag gtcaaataaa ttgtaaaaat gggaatagac aaaaagtgta gcggtgtgta
     6601 gtattactac tcattatgcc gcctgccttt gtttccgata ttgcgatgca gcgtgatggg
     6661 ggaaacaggt ttcagacggc atcgaaaaat tctttcctga cgagataata cgatgagtac
     6721 acaaacaaat tttgatttgg tgttgttcgg tgcgaccggc gatttggcga tgcgcaagct
     6781 gttgccctgt ctgtaccagg cgcatgttgc cggtctgctt catcccgaag ggcgtatttt
     6841 aggggtcagc cgcagcgagt tggataccga aggttttctg gcgaaggtgg aaaccagttc
     6901 caaaatccat gtgaaagaaa atttttccga tgaggcttgg gcatcgtttg tcgaacgtct
     6961 cgcatatctc aaagtcgatg ttacgcagcc ggacgatttt gccgctttgg gcgatttggt
     7021 caaagcgcgc aaagaaaccg acaatgtcgt catctatctt tccaccgcgc cgaaattctt
     7081 cgcgcaaaca tgtgaaaacc ttgccaaaat cggtttgaac gccgacaacg tgcgtgtggt
     7141 tttggaaaaa ccgttgggta cggatttggc ttcttcccag caaatcaata ccgatgttgc
     7201 gcgttatttc aaagaagggc aaatttaccg catcgaccac taccttggca aagaaagcct
     7261 gcaaaacctg cttgcgctgc gttttgccaa tgtaatgttc gagccgctgt ggaacaataa
     7321 atacatcgaa agcgtgcagt tgaccatcgc cgagcagttg ggcgtggaag agcgcggcga
     7381 gttttacgac attaccggcg cgttgcgcga tatggtgcaa aaccatttga tgcagatgct
     7441 gtgcatgact gcgatggaag cccccgccag cttggatgcc gacgcggtgc gcgatgaaaa
     7501 agtcaaagtc atcaagtcat tgaagccgct gaccgtcgag tctgtcaatg aaaacgtcgt
     7561 gcgcggacaa tataccgccg ccagaggcat gaacggctat cttgaagaaa tcaacgttcc
     7621 gcaagacagc tttaccgaaa cctacgtcgc cattaaagcc gaaatcgaaa acgaacgctg
     7681 gaagggcgtt cccttctacc tgcgtaccgg caaacgcatg gcgggcaaag tggcggaaat
     7741 cgttttgaac ttcaaagatt tgaacagcca tatttttgaa ggcagccgca ccgcgcccaa
     7801 ccggctcgtt atcgagttgc aaccatatga atccgtgcgc ctctatacgc agatgaaaac
     7861 cccgggggca ggaaataagg tcgaaaccgt gccgctggca accgatttgg gcaaagcatt
     7921 ggaaagccgc cgcgcggaag cttacgagcg cctgctgctg gatgtgatta acggcaaact
     7981 cgctttgttt aaccgccgcg acgaactcga agccgcgtgg gaatatgtga tgccgatttt
     8041 ggaaaactgg acaaataaca ccacgccgcc gcacggctac ggcgcacact cgtgggggcc
     8101 tgaagccgcg cgcgaactat tggcgcgcga cggacacaag tggcacgaag agcagtaata
     8161 caataatgcg ttcagacggc atggggtttg aaatgccgtc tgaacgtaag taaagcagta
     8221 tagtggatta acaaaaatca ggacaaggcg acgaagccgc agacagtaca aatagtacgg
     8281 caaggcgagg caacgctgta ctggtttaaa tttaatccac tataaaaagc agtcccgata
     8341 tttggtatca aaagcataaa caactgttcg gccgacatat tgctcaaccc gtttccataa
     8401 cggaatatgc cgtctgaaat aaaaaaagga cacaaatatg tttgtttggc acgaatacga
     8461 aaatgcggca gaagcggcgc agtctttggc tgacgcagtg gcggatgctt tgcagggcgc
     8521 actggacgag aagggcggtg cggtgttggc agtttccggc ggacgttcgc cgattgcatt
     8581 tttcaacgcc ctgtcgcaaa aagatttgga ttggaaaaac gtcggcatca ccttggcaga
     8641 tgaacgcatc gtgccgaccg tccacgccga cagcaatacc ggtttggtgc gcgaatacct
     8701 gttgaagaac aaagcggaag cggcaatgtg gattcctatg gtggaagacg gaaaaactga
     8761 aaccgaatta catcccgatg ctgttgtcga ttatgcactg aaacattaca aacagcccga
     8821 tgttttggtt ttgggtatgg gaaacgacgg gcatacggct tcgattttcc cgaaagctcc
     8881 gcagtttcag acggcaatcg acggttcggc aggtgtcgcg ctggtgcata ccacgcccgt
     8941 taccgcgccg cacgagcgcg tcagtatgac cttggatgcg attgcccata cggggcatgt
     9001 gtttttggcg atacggggcg aagagaaaaa agccgtgttc gaccaagccg cacaaggcga
     9061 aaaccgcgaa tatccgatca acctcgtttt gaaccatcaa ggagtgaact gccatgtctt
     9121 ctacgccgaa taaacaagcc ggatatcccc gactggtcgc cgatatcggc gggacgaatg
     9181 cacgctttgc gctggaaacc gcgccgcgcg tcattgaaaa agccgccgtg cttccgtgta
     9241 aagactacga tacggttacc gatgcggtgc gtgcctatct gaatcaaagc ggtgcaacag
     9301 ccgtacggca cgcggcattt gccatcgcca acccgatttt gggcgactgg gtgcagatga
     9361 ccaaccacca ttgggcgttt tccatcgaaa ccacccgtca gactttgggg ctggacaccc
     9421 tcatcctttt gaacgacttt accgcgcagg cattggcggt aacgcagact tcaagcaaag
     9481 acctgatgca ggtaggcggg caaaagcctg tcgaatttgc ccccaaagcc gttatcggcc
     9541 ccggtaccgg cctgggcgtg agcggattgg tgcacagcca cgcaggctgg gtggctttgg
     9601 cgggcgaggg cgggcatacc agtttcccgc cgtttgacga tatggaagtg ctgatttggc
     9661 agtacgccaa aaacaaatac ggccatgttt ccgccgaacg ctttttgagt ggcgcgggct
     9721 tgagcttggt ttacgaggct ttggctgcaa aacagaaagc caaacccgcc aaactgatgc
     9781 cgtctgaaat cacggaaaag gctttgagcg gcgcgtcgcc tttgtgccgt cagactttgg
     9841 acatcttctg cgccatgctc ggcacggttg cttccaacct cgccctgacg ctgggcgcgc
     9901 gcggcggcgt gtacctgtgc ggcggcatta ttccccgcgt gttggaatat ttcaaaactt
     9961 ccccgttccg cagccgtttc gagaacaagg gcaggtttga agcatatctt gccgcgattc
    10021 ccgtgtatgt cgtcttgagc gagttccccg gaatttccgg tgcggctgcg gctctcgaca
    10081 accatttgag aaacgtttaa ccacagcggc tccttgcagc ggggctgcat tatcgaaggg
    10141 catatcatta tgttaagcaa aatcagcgaa tcactggcaa acctttccgg tgcggaacgc
    10201 aaagtcgccg aatgtgcatt ggcggaaccc aaatggttcg ttcatgccgc cgttgccgaa
    10261 attgccgaac gtgcgtccgt cagccagccg accgtcatcc gattctgccg cagcttgggt
    10321 tataaagggc tgcccgagtt caagctcgcc ttgtccgcca gcatcggtca tgagggtatg
    10381 ccctatgtcc acgaagaact caatgccgac gacgatatgg caagcgtggt cgagaaagtg
    10441 ttgggcaatg ccgccgcctc gctgttgggc gaacgccgct tcctgaaaga gtcggagctg
    10501 gaaaacgcca ttgccacgct gatgcacgcc cgtcgcgtcg agttttacgg tgtcggcaat
    10561 tccggtatcg ttgcgcagga cgcgcaacac aagtttttcc gtttcggaat gtccacggtc
    10621 gcctatgtcg atacgcacac gcagctgatg gcagcatccg ttttgagcga tcaggatgtt
    10681 ttggttgcca tttccaacac gggttcgtct atcgaacttt tggatgcggt cagcatcgcc
    10741 aaagaaaacg gcgcgtccgt catcgcactg acccgcaacg attcgcctct ggcgcaactt
    10801 gccgactgcg tgttgagcgt tgccacacag gaaaatgccg aactctacac gcccatggtt
    10861 tcccgcctct tgcagcttgc cgtcatcgac attctcgcca tcggacttgc cctgcgcttg
    10921 ggcgatgctg ccagcctgca attgcagaaa agcaaaaaaa gcatacacaa caagcacatc
    10981 gattacgaca aagattgacc ttcagacggc atcccacaaa tgccgtctga aatgccgaac
    11041 aacggccgtc ggcggcttgc ggcagtttcc ggcagccttt tcatcccaca acaaaaaacc
    11101 tcattcagga gcatatagat gaaacacttt cacgacttac ccgcatggcc gaaattgtgg
    11161 aaccactttg acgacagcaa aacattgcat atgcgcgaaa tgttcgagca agacccgcag
    11221 cgtgcggaac gctactggct gcaagtcggc ggactgacgc tggactactc caaaaaccgc
    11281 atcaacgacg aaaccatgtc gcttttgttc gagttggcgc gtgaagcagg cgtgccggag
    11341 cggatgcggc agatgttcca cggcgaaaaa atcaatacga cggaaaaccg cgccgtcctc
    11401 cacgtcgccc ttcgcaaccg caccaattcg ccgattgtgg ttgacggtga agatgtgatg
    11461 ccaaaagtca accgcgtttt gcaacgtatg ggcgaatttg cacacgaagt ccgcagtgga
    11521 agctggctgg gctataccaa ccaagtcatt accgacgttg tcaacatcgg catcggcgga
    11581 tcggatttgg gcccgttgat gatgtgtacc gcgctcaaac ctttcggtca tccacgcctc
    11641 aatatgcact tcgtctccaa cgtggacggc tcgcaactgc gcgacgtatt gtccaaagtc
    11701 caccccgaaa ccacgctgtt cattatcgcc tccaaaacct ttaccacgca ggaaacgctg
    11761 accaacgcgc tgaccgcgcg cgaatggttt ttgaatcatg cgggcgatga aagcgccgtc
    11821 gccaaacatt tcgttgctgt ttccaccaac caaaaagccg ttgccgaatt cggcatcgac
    11881 accgccaata tgtttgaatt ttgggactgg gtcggcggcc ggtacagcct gtggtccgcc
    11941 atcggattgc cgattatgct gtatctcggc gaagaaaact tcatcgaaat gctcaacggc
    12001 gcgcacctga tggaccaaca tttcatcaac actccgctcg agcgcaacct gcccgccatc
    12061 ctcgccctta tcggcatctg gtacatcaac tactacggcg gcggaagcca cgtcatcgca
    12121 ccttacgacc aacacctcca ccgcctgccc aaattcatcc agcagctcga tatggaaagc
    12181 aacggcaaac aggttacgtt ggacggcaaa gcagtcggac acgaaacctc gccgattatt
    12241 tggggcgaaa cgggcatcaa cggccagcac gccttcttcc aactgctgca ccaaggcacg
    12301 cacatcaccc ccatcgacct catcgcctcg cttgaaaaac gcagcaacct gcccggacac
    12361 cacgaaatcc tgcttgccaa cgtcttcgcc caagcagaag cctttatgcg cggcaaaacc
    12421 cccgacgaag tccgcgccga actcaaagcg cagggtatgg atgaggcgcg tatcgaagag
    12481 ctggttccgc acaaaacctt ctccggcaac cgcccgacca acctcatcct gatggataag
    12541 gtcaaccccc gcaatatggg cagcctgatt gccatgtacg aacacaaaac cttcgtacaa
    12601 ggcatcattt ggggcatcaa cagcttcgac cagtggggcg tggaactcgg caaacaactg
    12661 gctaaaacca ttttgggcga actgaccggc gaaaccgggc cgcaaaagca cgacagttcg
    12721 accgaacgcc tgatcaggct ttacctgcaa accaaccgca aataaaacct gcggaaaaat
    12781 gccgtctgaa cgccgaccgt ttcaaacggc atttttatcg aacaggaaaa ccgtcggtaa
    12841 acttgcagag cgtgtgcaat cccgatatga tggtttgcat aaatttaaac atgtatgttc
    12901 cgcagctatg gcactgatta aagagccgtt ggacaaagcg aaacaaagga acgaagaact
    12961 tgaagcggca gaagaagcgg cggcgcagga ggcattgggt cgggagcagg aagtcgaccg
    13021 cgtatccgaa tgggaagaac gctacaagct gtcgcgcagc gagttcgagc aattctggaa
    13081 aggattgcct caaaccgtac agaataagct gcaagcctca cagaaaacat ggaaaagcgg
    13141 gatggataaa atctgtgcca acaatgcgaa agctgaaggt gaaacgccaa acggcataaa
    13201 attcagcgaa ctggcatgca aaacggcgga aaccgaagca cgcttggaag agctgcacaa
    13261 ccgtaaaaaa gcccttatcg acgaaatggc cagggaagcg gacaagaaag aactgccaaa
    13321 gcggctctga acagcgcggt tcaggcactg cccgccgata ttgccgaaac cgtcatgccc
    13381 gagtaccgca actgacaaaa cggtttgaat gccaaatgcg ccgacggcga cgaatacggc
    13441 gtggcacaat ctgactgccg taccagagaa atcaatgcga aaaccaaaga aatccaaggt
    13501 tatctgattg actgaaactt ggatgcggga atgtcggcgg cttttgcgtt tttgtcgttt
    13561 ttatagtgaa ttaaatttaa accgatac
//
LOCUS       DAXIFD010000041        13504 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.041, whole genome shotgun sequence.
ACCESSION   DAXIFD010000041 DAXIFD010000000
VERSION     DAXIFD010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13504
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.041"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(77..152)
                     /locus_tag="ACFOCN_000839"
     tRNA            complement(77..152)
                     /locus_tag="ACFOCN_000839"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(117..119),aa:Asn,seq:gtt)
     gene            complement(343..1095)
                     /locus_tag="ACFOCN_000840"
     CDS             complement(343..1095)
                     /locus_tag="ACFOCN_000840"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HFC6970016.1"
                     /translation="MITLPSLNNLPSKWDEIRHCLETRVFECGVMPHPNLTECEAGQF
                     DRDFWDNIGCAPEEYVRIRRAIRLLEVRYPDSLNELVCAAIATPLGEMLAVFGNKGLC
                     LLEFVGQKHLEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQI
                     GTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPKAVRAVAAANGQNKVSILIPCHRVI
                     GSDGKLTGYAGGLNRKQFLLALERGEVQTALF"
     gene            1406..1930
                     /locus_tag="ACFOCN_000841"
     CDS             1406..1930
                     /locus_tag="ACFOCN_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HFC6970017.1"
                     /translation="MQTRILSAVLLAFSTAAFAGGAFTLQFDNPSEDGGFTQNQLLSA
                     PYGFGCSGGNAPPALSWKNPPAGTKSFVLTVYDKDAPTGLGWMHWVVADIPADVRRRN
                     AASLQLSRCANIADDQSAAISAVISLRICRIRLTPSYTAKPMPSCCNHANTPQSAASA
                     TLCGTFSSASTAAA"
     gene            1891..2070
                     /locus_tag="ACFOCN_000842"
     CDS             1891..2070
                     /locus_tag="ACFOCN_000842"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970018.1"
                     /translation="MRHFFIRQHRSRIIKRRAHPPGMRQLHRIAHCLRRPVLCGKPFY
                     GFLFESNPLRLIEVV"
     gene            complement(2155..2298)
                     /locus_tag="ACFOCN_000843"
     CDS             complement(2155..2298)
                     /locus_tag="ACFOCN_000843"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970019.1"
                     /translation="MPSNYFHTRERLGALGGIVQHHTALYRSVAVYEPAVLIVRRGSK
                     KLR"
     gene            complement(2670..3815)
                     /gene="dapE"
                     /locus_tag="ACFOCN_000844"
     CDS             complement(2670..3815)
                     /gene="dapE"
                     /locus_tag="ACFOCN_000844"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HFC6970020.1"
                     /translation="MTETQSLELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEEL
                     HFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADM
                     KTSIACFVTACERFVAEHPDHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYC
                     IVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQ
                     EVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAI
                     LDKHGVQYDLQWSCSGQPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKA
                     IAKELIELGPSNATIHQINENVRLDDIPKLSAVYEGILARLLAGNAV"
     gene            complement(3928..4548)
                     /locus_tag="ACFOCN_000845"
     CDS             complement(3928..4548)
                     /locus_tag="ACFOCN_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HI_0552 family protein"
                     /protein_id="HFC6970021.1"
                     /translation="MLTPKSCDLFNIPFFQFAQLKKYRPESIPQIKADYKENWQIWQQ
                     LIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYAQYKNSAAILSILLNRRRLSV
                     SLDWHCYKADVSPITLPDYNRWLDNFDTEKYAAFDMWHGAESEYDDHRTVAQQNESDR
                     KLQNDEDFFCIGKHIERDDLGRQDVAKWIAETVEDLLPLYEACHGK"
     gene            complement(4582..5091)
                     /locus_tag="ACFOCN_000846"
     CDS             complement(4582..5091)
                     /locus_tag="ACFOCN_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6970022.1"
                     /translation="MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGC
                     NQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELLRQHIGLHDN
                     WAAVSAEFAKLEADNAYVPDAEAFKRFVAGYDVHLAIEEPLFDMGNAFIPKEKLTEIG
                     EIMAARRRK"
     gene            complement(5186..5737)
                     /gene="azu"
                     /locus_tag="ACFOCN_000847"
     CDS             complement(5186..5737)
                     /gene="azu"
                     /locus_tag="ACFOCN_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HFC6970023.1"
                     /translation="MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAE
                     AAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGH
                     NLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADG
                     DYKFACTFPGHGALMNGKVTLVD"
     gene            complement(6018..6440)
                     /locus_tag="ACFOCN_000848"
     CDS             complement(6018..6440)
                     /locus_tag="ACFOCN_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HFC6970024.1"
                     /translation="MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQT
                     ACVEDGRLILLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNT
                     LHLSKAALESFGSAAAKLEKRHPELAEALANLVRRHGA"
     gene            6571..9321
                     /gene="secA"
                     /locus_tag="ACFOCN_000849"
     CDS             6571..9321
                     /gene="secA"
                     /locus_tag="ACFOCN_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HFC6970025.1"
                     /translation="MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQ
                     AKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEM
                     RTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISD
                     MQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDE
                     ARTPLIISGQADDNIQLYQIINTVPPHLVRQETEEGEGDYWVDEKAHQVILSEAGHEH
                     AEQILTKMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEF
                     TGRLMSGRRWSEGLHQAVEAKESVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTE
                     AFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVG
                     TTSIENSELVSHLLQKAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDI
                     VLGGNLKHQTDAIRSDENLSDEEKQAQIAALENGWQAEHDKVMEAGGLHIIGTERHES
                     RRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPERGVAIEHNL
                     LTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMKEIR
                     FDVVGGLVDLYMPPESMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNTIDGQDIKER
                     LIERIENEYAAKTELVGRQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQ
                     KNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVAAVEEQPVGNIQSIHSES
                     PDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGK
                     LA"
     gene            9465..11237
                     /gene="dnaG"
                     /locus_tag="ACFOCN_000850"
     CDS             9465..11237
                     /gene="dnaG"
                     /locus_tag="ACFOCN_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HFC6970026.1"
                     /translation="MIPSDFIDELLAKVDIVDIIDEQVPLKKGGANYMACCPFHKEKT
                     PSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQND
                     NPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPTAKAYLDKRGLGAEVIAHYGLGYA
                     PDGWQPLAQVFQPYPNTALVDTGMVIDNEGRHYDRFRHRIMFPIRNPRGQVIGFGGRV
                     LDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGY
                     GVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFL
                     FLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTS
                     SPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQ
                     PVMLTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAESIKNHAAVPETAQV
                     LEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ
                     KSLQSGLNESEKKLLLSLLTAKQN"
     gene            11425..13353
                     /gene="rpoD"
                     /locus_tag="ACFOCN_000851"
     CDS             11425..13353
                     /gene="rpoD"
                     /locus_tag="ACFOCN_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HFC6970027.1"
                     /translation="MSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEI
                     NDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAA
                     LSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSI
                     AEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENED
                     DEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAI
                     ANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEI
                     TNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSS
                     EKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
                     FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLA
                     ELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHE
                     VTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRH
                     PTRSDRLRSFLDSEDSKL"
BASE COUNT         3442 a         3815 c         3359 g         2888 t
ORIGIN      
        1 ctatcttgcc gcattccgaa cgccgtacgt gcaaatatga aaaagcccga acattcaagt
       61 tcgggcttca aaattctggc tccccgacct gggctcgaac cagggacctg cggattaaca
      121 gtccgtcgct ctaccgactg agctatcggg gaatggggtg tattatagcg tccgaaaaaa
      181 atgtgtcaat ccttaatttt ggaaaaatgg gcgacaaaac gacaagcata tgaatcagaa
      241 agacattaag accgatgcct taaaaggatt gccgttgtat gaatttccac agccgtcatc
      301 acaccatatt taagcccgat gagccgttct gccctccccc gcttaaaaca atgccgtctg
      361 aacttcgccg cgttccaaag ccagtaaaaa ctgtttgcgg ttcaacccgc ccgcgtagcc
      421 ggtcagtttg ccgtcgctgc cgatgacgcg gtggcaggga atcaggatag atactttgtt
      481 ctgcccgttg gcggcggcaa cggcgcggac ggctttgggg ttgcccaaac gctgcgcctg
      541 ctccttgtag ctgcgcgttt cgccgtaagg aatcgccaag agcgcgtccc atgcctgctt
      601 ttgaaactcg gtgccaatct gctccaaagg cgtggcaaag gttttcagac gacccttgaa
      661 gtataagtcc aattcctgcc gcaaaagttg cgtccgctca tcctcccgaa acacaaaccg
      721 tccgcgcaag gctttttgga cggcggcaat ttcctgttcc aaatgcttct gtccgacaaa
      781 ctccagcaga cacaatccct tatttccgaa caccgccagc atctcgccca aaggcgtggc
      841 aatggcggca cacaccagct cgttcaagct gtcgggataa cgcacttcca acagacggat
      901 ggctcggcgg atacggacat attcttcagg cgcgcagccg atattgtccc aaaaatcccg
      961 atcgaactgc ccggcttcgc attccgtcag attgggatgc ggcataacgc cgcactcaaa
     1021 aacccgggtt tcgaggcaat ggcggatttc atcccatttt gacggcagat tgtttaagga
     1081 aggcagggta atcattcgtt tgctccgtat ctctatcatg gatttggcgg caaaatcccc
     1141 aattctcgtc attcccgcac gccgatgcag gaacgggcta tgacgtaaat cttgagggtt
     1201 gggttgcggc aatgcctaaa tatgcgatat ttctaaagcc tcagggaaag gaattaaaga
     1261 cttcagacga cctgcaaagg gtcgtctgaa accacgattt ttgcatttac gcattccggc
     1321 acatcatcca accgtttcgg cacattcctg ccgccgttga cagcctataa tgaatccact
     1381 tattcatcaa gcaaaggaat catctatgca aacccgcatc ctctccgccg tactgctggc
     1441 tttttcaacc gctgcctttg ccgggggcgc attcacgctg caattcgaca acccgtccga
     1501 agacggcggc ttcacgcaaa accagctttt gagtgcgcct tacggcttcg gctgttcggg
     1561 cggcaatgct ccgcccgcgc tgtcgtggaa aaatccgccc gccgggacaa aaagtttcgt
     1621 cctgaccgtt tacgataaag acgcgccgac cggactgggc tggatgcact gggtggtcgc
     1681 cgacattccc gccgatgtcc gccgccgcaa cgcggcctcg ctgcaattaa gccgctgcgc
     1741 caacatcgcc gacgaccagt ccgcagccat atcggcggta atcagtttgc ggatttgccg
     1801 catcaggttg acgccttcgt acacggcaaa accgatgccg tcatgctgca accacgccaa
     1861 cacgccgcaa agcgcggcct ccgccacatt gtgcggcact ttttcatccg ccagcaccgc
     1921 agccgcataa tcaaacgccg cgcccatccg cccgggatgc ggcagcttca ccgcatcgca
     1981 cactgcctgc gccgtcccgt attgtgcggc aaacctttct atggcttcct gttcgaaagc
     2041 aatccattgc gcctgataga ggtcgtctga atcgggaata ttgatgacgt caaacgtctg
     2101 cccgcctgcc aaggcgaccg cctcacccgc cgcaatcctc aattcgcgcc tcgctcaccg
     2161 cagcttcttg cttccgcgcc gcacgataag cacagccggt tcatataccg ccacgctgcg
     2221 gtacaaggcg gtatgatgtt gcacgatgcc gcccaaagca cccaatcgtt cgcgcgtatg
     2281 aaagtaattt gacggcacta ttatctccaa cacgcagggc cgcacataag gcgcagccct
     2341 gtttaccctg atttggaagg ggttacttcc caaaaataaa ccaaaatccc actgccccga
     2401 atggccgggt ttcaaccata ttccgtcggt gtgcctgcaa cttgactccc tcccctgtgg
     2461 gggagggttg gggagagggt aaaacggggc agatacagac aatatttccg ttaccgcccc
     2521 gatgccctct ccctaaccct ctcccacggg agagggaatg gattgccgtt gaaataaatc
     2581 gctctacata aaaaatcaat gtgttatctc aaacccacgt taggtctaag caaatggtcg
     2641 gacatccgta tccggcaagc aagctgcttt cagacggcat ttccagccaa caagcgcgcc
     2701 aatatcccct catacaccgc cgacagcttc ggaatatcgt ccagccgcac gttttcgttg
     2761 atttggtgga tggtcgcatt ggacgggcct aattcgatga gttcttttgc aatggctttg
     2821 atgaagcgtc cgtccgaagt gccgccggtg gtggacaatt cggcctcaat gccgcaggtt
     2881 tcggcaatgg ctgcgcgtgc cacgtcggtc agtttgcccg cttgggtcag aaagggctgc
     2941 cccgaacacg accactgtaa atcgtattgc acgccgtgtt tgtccaaaat ggcgtgaacg
     3001 cgttgtttca gccctgcttc ggtggactcg gtggagaagc ggaaattgaa tttgacgttc
     3061 agctcgcccg gaatgacgtt ggtcgcgcct gtaccgccgt tgatattgga aatttgaaag
     3121 ctggtcggcg gaaagtattc gttgccttcg tcccagactt cctgcgtcag ctctaacaag
     3181 gccggggcaa aagtgtggac gggattgatt gccaaatgcg gataggcaat atgtccttgc
     3241 ttgcctttta cggtcaggtt gcccgacagc gagccgcgcc ggccgttttt aatcatatcg
     3301 cccaatttgt ccacggctgt cggttcgccg acgatgcagt agtcgataag ctcgtcgcgc
     3361 gctttcaata catcgacgac tttggtcgtg ccgtccaacg cgtcgccctc ttcgtcggaa
     3421 gtaatcagaa gcgcaatgct gccttggtgg tcgggatgtt cggcaacgaa gcgttcacag
     3481 gcggtaacga agcaggcgat gctggttttc atgtctgccg cgccgcgccc gtataatctt
     3541 ccgtcgcgct cggccggttc gaacgggggc gaatcccatt tttcgacagg acctgtcggt
     3601 acaacgtcgg tatgccctgc aaaacagacg acgggagctt tcgtgccgcg tcgcaaccag
     3661 atgtttttgg tgtcgccgaa atggagttct tcagccgcaa aaccgatttt gtgcaggcgt
     3721 tcggcaagga gtttttggca atccctgtcg tcaggggtaa cggatggtcg ggaaatcagc
     3781 tctttggcaa gctctaggga ttgagtttcg gtcatatttg ttcacttttg aaattagacc
     3841 gtctgaaacg ttctgaatgt gattttcaga cggcatttag gttaggttgg catacggggt
     3901 gggtatttta cccatcagtc ttctgaatca tttgccgtgg caggcttcat aaagcggcag
     3961 caaatcttcc accgtttccg ctatccattt cgcgacatcc tgcctgccca aatcgtcgcg
     4021 ttcgatgtgt ttgccaatgc agaaaaagtc ttcgtcgttt tgcaactttc ggtcggactc
     4081 gttttgttgc gcgacggtgc ggtggtcgtc gtattcgctt tccgcgccgt gccacatatc
     4141 gaatgcggcg tatttttcag tgtcaaaatt atccagccat cggttgtaat cgggcagagt
     4201 aatcggcgac acgtcggctt tgtagcagtg ccaatccaag ctgacactca gacggcggcg
     4261 gttaagtagt atcgacagga tggcggcaga gtttttgtat tgggcgtatt tgaaataggc
     4321 aaagaaatgg gcgcgaacct gccagccgtt acaccagcgt tcgatgtgcg gcggcgcaaa
     4381 cggcgcaccc aattcggcgg caacctgctg aatcagctgc tgccatatct gccagttttc
     4441 cttgtagtcg gctttgattt gcggaatgct ttcaggccgg tattttttaa gctgggcaaa
     4501 ctggaaaaac gggatattga acaaatcgca acttttcggg gtcagcataa tatatccttg
     4561 agacgattgt ttcagacggc attatttgcg ccggcgcgcc gccatgattt cgccgatttc
     4621 ggtcagtttt tcttttggga taaaggcgtt gcccatatca aacagcggct cttcaatcgc
     4681 caaatgaaca tcatatcccg ccacaaaacg tttgaacgct tccgcatcgg gaacataagc
     4741 attgtctgct tcgagtttgg caaattcggc ggaaacagcc gcccagttgt cgtgcagccc
     4801 gatatgttgg cgcaaaagct cgtccacgct ttcttgggct tgcggcgcat attgcagcag
     4861 cagcgggaag aagttttctt cttcgtcttc atggtgcagc ggcgcggcaa cgttgaaata
     4921 ctgggcgatt tggcggatgg tttgcaaaac aatctgattg cagccgtttt cggcgatata
     4981 gtccgacagc atggcgactt gtccgcaaaa acggcgcact ttgccgtggc aggcatacag
     5041 catttcaatc ggttcggcaa aggtaacgct tttggtttca aacggattca tgttttcgtt
     5101 ctcaacgggc acttttcaag cagtcatttt ataataaaac agcctgcaca aagcaggctg
     5161 tccgtctttt gagactttaa gcggattaat cgaccaaagt cactttgccg ttcatcaaag
     5221 caccgtgacc cgggaaggtg caggcaaatt tgtagtcgcc gtcagccaat ttggcaggat
     5281 ccagagtcag ggaagactct tcgccgccgc cgatcagttt ggtgtgggca acaacgcgcg
     5341 catcgtcagg tttgacatag tcggtatcgg cagcacctac gccgtcttta aatacgccgt
     5401 ccatgtcttc agctttggca atcacaaggt tgtgacccat gctggctttg ggttgcgtac
     5461 cggtatgttt cagagtgatg gtaaactctt tacatgcttt gctgacttgg atgtctttgg
     5521 tgttgaactg catattgtcg ttggattcga cagttgccgc acaattgccg gcagcagggg
     5581 cttcggcagc atctgcagga gcagcttcgg cggcaggcgc ttcggaagcg ggtgcttcag
     5641 cagcaggagt tgcctcggca gcaggcgcgg caggttcttg agagcaggca gccaaaccga
     5701 taacggcggc agaaatcaga gccagataag ctttcatggt aaatctccaa tcgataaaat
     5761 aatattcggt tttacagaaa tcaaagtgca accgccatta acaaaacctt gaaaaagatt
     5821 ccgccgcgtt gcacaaacag atgtttcggg gcggcatttt gctacaaatt tcatttgaaa
     5881 tcaaagcctg tctgcaagtt tacaatcgtt tactttaaaa ggggcaattt taccccgaac
     5941 ctatttcttt agtattagac ccattatcct ttacttctta atattaacgg atgtttacac
     6001 aaattcccgt atacatttta tgcgccatgc cttctaacca agtttgccaa tgcctccgcc
     6061 aattcgggat gccgtttttc caactttgcc gccgccgaac cgaaactctc cagcgcagcc
     6121 ttactcaaat gcagggtatt ggttttcggc ggtttttccg gtttcgggac cagcctgacc
     6181 gaaacagagc gtatcgaagc gtcaagccct gccagctgcg gcaataccga cggggcaatc
     6241 atcttcaagc gcgatgccgc catattgttt gccgccaaaa gaatcagcct gccgtcttcg
     6301 acgcaggccg tctgaaaatg cgggtgcagg ttggcaggca gcagtttttt cacggcggca
     6361 tccaaccgcc gccactgtcc cgcctgtttc aaaagtccgg aaagcagcgc gtcccgcctg
     6421 cccaactgtt ccaaattcat aaaacataca cccaaaaaga ttgaaatacc gcaaacgcgc
     6481 ctttatttca gacggcatta gcactttgca caaacgcttg tgttaaaatc gcgttttcgc
     6541 ccactattat atcaggcgca ggaattattc atgctgacaa acattgccaa gaaaatcttc
     6601 ggcagccgca acgaccgctt gctgaaacaa taccgtaaat ccgttgccag aatcaacgcg
     6661 ctcgaagaac agatgcaagc cctaagcgat gctgatctgc aagccaaaac tgccgaattc
     6721 aaacaacgcc tcgccgacgg tcagactttg gacggcattt tgcccgaagc cttcgccgtc
     6781 tgccgcgaag cgtcccgccg caccctcggt atgcgccact tcgacgtgca gcttatcggc
     6841 ggtatggtgc tgcacgacgg caaaatcgcc gaaatgcgta ccggcgaagg caaaaccctg
     6901 gtcgccaccc tcgccgtcta tctcaacgcg ctggccggca aaggcgtgca cgtcgttacc
     6961 gtcaacgact acctcgcctc gcgcgacgca ggcattatgg agccgctcta caatttcctc
     7021 ggcctgaccg tcggcgtgat tatttcagat atgcaaccgt tcgaccgtca aaacgcctat
     7081 gccgccgata tcacctacgg caccaataat gaattcggct tcgactacct gcgcgacaat
     7141 atggttaccg accaatacga caaagtgcag cgcgaattga attttgccgt tgtcgatgaa
     7201 gtggattcca tcttgattga cgaagcgcgc actccgctga ttatctccgg tcaggcagac
     7261 gacaacatcc agttgtacca aatcataaac accgtcccgc cccacctcgt ccgccaagaa
     7321 accgaagaag gcgaaggcga ctactgggta gatgaaaagg cgcaccaggt catcctgagc
     7381 gaggcaggtc acgaacacgc cgagcaaatc ctgaccaaaa tggggttgct ggcagaaaac
     7441 gactcgctct attccgccgc caacatcgcc ctgatgcacc accttatggc cgcattgcgc
     7501 gcgcactcgc tgttccacaa agaccaacat tacgttatcc aagacggcga aatcgtcatc
     7561 gtggacgaat ttacaggtcg tctgatgtcc ggccgccgct ggtcggaggg tctgcaccaa
     7621 gccgtcgaag ccaaagaaag tgtggaaatc aaacgcgaaa accaaaccct cgcctccatc
     7681 accttccaaa actatttccg cctgtacacc aagctctccg gtatgaccgg tacggcagat
     7741 accgaagctt tcgagttcca aagcatttat aacctcgaaa ccgtcattat cccgaccaac
     7801 cgccccgtac agcgcaaaga cttcaacgac cagattttcc gttccgccga agaaaaattc
     7861 gaagccgtcg tcaaagacat cgaggaatgc cacaaacgcg ggcagcccgt cctcgtcggc
     7921 accaccagca tcgaaaactc cgaactggtc tcccaccttc tgcaaaaagc cggactgccg
     7981 cacaacgtcc tcaacgccaa agaacacgaa cgcgaagccc tgattgtcgc ccaagccggc
     8041 aaagtcggtg cgattaccgt tgccaccaat atggcgggac gcggtacgga catcgtttta
     8101 ggcggcaacc tgaagcacca aaccgatgcc atccgatccg acgaaaacct gagcgacgaa
     8161 gagaaacagg cacaaatcgc cgcactcgaa aacggctggc aggcagaaca cgataaagta
     8221 atggaagcag gcggtttgca catcatcggc acagaacgcc acgaaagccg ccgtatcgac
     8281 aaccagttgc gcggacgctc cggccgtcag ggcgaccccg gatccagccg tttctacctc
     8341 tcctttgaag acccgctgct gcgcctattc gcactcgacc gtgccgccgc catcctcaac
     8401 cgcctcgcac ccgaacgcgg cgtcgccatc gaacacaacc tgctgacgcg ccaaatcgaa
     8461 ggcgcgcaac gcaaagtcga aggcagaaac ttcgatatgc gcaaacaggt tttggaatac
     8521 gacgacgttg ccaacgaaca gcgcaaagtc atttacagcc agcgcaacga aattctgacc
     8581 agcaaagaca tcagcgacct gatgaaggaa atccgttttg atgtcgtcgg cgggcttgta
     8641 gacctctata tgccgccgga aagtatggaa gagcagtggg atattccgac cctggaaaac
     8701 cgtttggctg ccgaattcag actgcacgaa gacattcagt cctggctgaa agcagacaat
     8761 acaattgacg gtcaagacat caaagagcgc ctgatcgaac gcatcgaaaa cgaatatgcc
     8821 gccaaaaccg aactggtcgg caggcaggcg atggcggatt tcgagcgcaa cgtgatgttg
     8881 caggtcatcg acaaccaatg gcgcgaacac ctcgccgcta tggactacct gcgccaaggc
     8941 atacacctgc gcagctatgc ccaaaaaaat ccgaagcagg aatacaaacg cgaagccttc
     9001 acgatgttcc aagacctgtg gaacggcatc aaattccata ttgcttccct gcttacctcg
     9061 gttcaaatcg aacaaaaccc tgtcgcggcg gttgaagagc aacccgtcgg caacatccag
     9121 tccatccatt ccgaatcgcc cgatatggaa gaacttttgg ggcaatcgca aaccgatctg
     9181 gttaccgaag cctttaatcc cgatgggacg gatttcagcc ccgaagcctt ggaagcgcgg
     9241 gggcaaatcg tccaccgcaa cgacccctgc ccctgcggca gcggtttgaa atacaaacaa
     9301 tgccacggca aactggcttg agcgtttgaa cgcaaatgcc gtctgaacat ccggtttccg
     9361 gcttcagacg gcattttgcc tgaaccgcca catccgaccg ccattccgaa aactcccgat
     9421 ttcgtaccgt acaaactaaa aacaggcatc cgccccgccg aactatgatt ccatccgact
     9481 tcattgacga acttctagcc aaagtcgata ttgtcgatat tatcgacgag caggttccgc
     9541 tgaaaaaagg cggggcgaac tatatggcgt gttgcccgtt ccacaaggaa aaaacaccgt
     9601 cgttttcggt cagtccgacc aagcagtttt atcattgttt cagttgcggg gcgcatggtt
     9661 cggcgattgg ttttgtgatg gaacatcagg ggctgtcgtt tccggaggcg gtgcagtttc
     9721 ttgccgaccg tgtgggcatg gttgtgccta aagtgcgcgg gcagaacgat aatcccgaag
     9781 tccgtgccga acgtaagaaa aaacagcaga cactggagga aacgacggct gcggcggctg
     9841 atttttacgc gcaacagttg aaattcaatc cgacggcgaa ggcttatttg gacaagcgcg
     9901 gcttgggtgc agaagttatc gcgcattatg gtttgggcta cgcgcccgac ggttggcagc
     9961 ctttggcgca agtgttccaa ccgtacccga atactgcgtt agtggatacg gggatggtga
    10021 ttgacaatga gggacggcat tacgaccgct tccgccatcg gattatgttc cccatccgca
    10081 atccgcgcgg gcaggtgatc ggtttcggcg gcagggtgct ggacgactcg aagccgaaat
    10141 atttaaattc tcccgataca cctttgtttg acaaagggaa aaacctttac ggactgtatg
    10201 aagggcgtgc cgctgtcaag gaagcaggac gaattttggt ggtcgaaggc tatatggacg
    10261 tggtcgcgct ggcgcagttc ggcgtgggct acggcgtagc ggctttgggt acggcaacga
    10321 cggcagaaca cgtcaaaatc ctgatgcggc aggcggacag tatttatttc tgtttcgacg
    10381 gcgacagcgc ggggcgaaaa gcggcttggc gcgcgctgga aaacgcgttg ccgcagttga
    10441 aagacgacaa atcgctgcat tttttgttcc tgcccgagga acacgacccc gacagttaca
    10501 tccgtgccta cggcaaagcg caatttgaag acgcgcttct gaatcaaagc aagcctttgt
    10561 cggagtattt ctgggaacac ctttcagacg gcattcatct caatacgcag gaaggcaagg
    10621 cggaattggt gaaaaccagt tcgccgcttt tggcgcagat taccgcgccg gcattggctt
    10681 atttgttaaa acaacggctt agcgaactgg tcggcatcga ccccgacaac ctcgcgcaac
    10741 tgctaggaca ggaagcgccg aagcggcacg tcaaacaaaa aaactacaaa ctgcctccga
    10801 tttccgtcaa acagcccgtc atgctgacgc tggtacagcg gcaaatccgc agcctcttga
    10861 taaatccgga ttgggctgca tatatagacc tgcccgatta tctggcgttg gacggtgatt
    10921 tcgcctgcct tgccaatctt gccgaatcga ttaaaaacca tgccgccgta cccgaaaccg
    10981 ctcaggtttt agagtatatg cgcggctcgc cttacgaaga aacgataacc cgaatcttcc
    11041 attcaacgca ccaatcggaa gaaatgaaca gcagcagtga agaagattgc gagaatttcc
    11101 aaatcggcat gaaaaaactg ctcaatgagt taaaatacag ccaaatcgaa gcattgaaac
    11161 aaaaaagcct gcaatccggc ttaaatgaaa gcgagaaaaa acttttgctg tcgttgctga
    11221 ccgcaaaaca aaattgaccg gcggattccg ccacccgtaa acccgttatg ccgtctgaaa
    11281 agcacttacc ccggctgcaa caacgacacc tgcagaacac ccatccccaa aagccttcag
    11341 acggcatcag agtaccctac tctgccacgc cttcaggtgc gtccaaacgc aaaccgtcgg
    11401 catcttgcca acagaaagca gacaatgtcc aaaaaccaaa atcacgaaga ataccaagac
    11461 gatgcccgac ccctgacgat tgaggaacaa cgcgcgcgcc tgcgccaact catcattatg
    11521 ggcaaagaac gcggctacat cacctactcc gaaatcaatg acgcactgcc cgacgatatg
    11581 tccgatgccg atcaaatcga caacatcgtc agtatgattt ccggtttggg tatccaagtt
    11641 accgaacacg cccccgatgc ggaagacata ttgttaagcg acaatgccgc cgttaccgac
    11701 gatgatgccg tcgaagaagc cgaggccgcc ctttccagcg ccgactccga gttcggcagg
    11761 acgaccgacc ccgtccgtat gtatatgcgc gaaatgggac aggtcgacct gctgacccgc
    11821 gaagacgaaa tcatcatcgc caaaaaaatc gaaaacgccc tgaaaaatat ggttcaggcc
    11881 atctccgcct gcccgggatc cattgcggaa atcttagaac tcatcgaaaa aatccgcaaa
    11941 gacgaaatcc gcgtcgacga agtcgtagaa gccattatcg acccgaatga agtattgctc
    12001 aacgaattgg gcttggggca cttggaaacc acagcgcccg agaaaccttc caacgacaat
    12061 tcggacgaaa acgaagacga cgaagaatcg gaagaagatg cggatgaaat ctcggcagcc
    12121 aatctcgccg aattgaaaca aaaagtcatc ggccactttg cccaaatcga aaaagactac
    12181 aaaaaaatga tcggtcgttt ggaaaaacac cacagccggc acaaagacta tctcgcctac
    12241 cgcgacgcga ttgccaacaa actgctggaa gtccgtttcg ccacccggca aatcgacagc
    12301 ctcagcagca gcctgcgcgg aaaagtagaa aacatccgca aactcgaacg cgaaatccgc
    12361 gacatctgcc tcgaccgcgt ccatatggag cgcgactact tcatccaaaa cttcctgccc
    12421 gaaatcacca atctggaatg gattgaagaa gaaatcgcca aaggcagggt ttggagcgac
    12481 gcgctcgacc gcttccgcca cgccatcctc gaaaaacaaa ccgagttggc agatatggaa
    12541 aaagaaaccc gcatttccat cgaagagttg aaagaaatca acaaaaatat ggtgtcgagc
    12601 gaaaaagaaa ccgcagccgc caaacaggaa atgattcagg caaacttgcg cctcgtcatt
    12661 tccattgcca aaaaatacac caaccgtggc ttgcagttcc ttgatttgat tcaggaaggt
    12721 aacatcggcc tgatgaaagc ggtcgacaag ttcgaatacc gccggggcta caaattctcc
    12781 acctacgcaa cctggtggat ccgccaggca atcacccgtt cgattgccga tcaggcgcgt
    12841 accatccgca ttccggtaca tatgattgaa accatcaaca agatgaaccg catctcgcgc
    12901 caacaccttc aagaaaccgg cgaagaaccc gattccgcca aacttgccga actgatgcag
    12961 atgcccgaag acaaaatccg caaaatcatg aaaatcgcca aagagccgat ttcgatggaa
    13021 acccccatcg gcgacgacga cgattcgcac ttgggcgact tcatcgaaga tgccaacaat
    13081 gttgcgccgg ccgatgcggc aatgtacacc agcctgcacg aagtaaccaa agaaatcctc
    13141 gaaagcctga caccgcgtga ggcaaaagtc ctgcgtatgc gtttcggcat cgatatgaac
    13201 accgaccaca cgctggaaga agtcggcaga cagtttgacg taacgcgcga acgcatccga
    13261 caaatcgagg caaaagcact ccgcaagctg cggcatccga caagaagcga ccgtttgaga
    13321 agtttcttgg acagcgaaga cagcaagctg taaaccaaaa aaccgcaggt ttcaaatacc
    13381 tgcggttttt tcttacacaa taaacaacgc ttccacatat cccacactcc tatcccgaga
    13441 cctttgcaaa atcccccaaa atcccctaaa ttcccaccaa gacatttagg agcaccttct
    13501 tcca
//
LOCUS       DAXIFD010000042        13474 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.042, whole genome shotgun sequence.
ACCESSION   DAXIFD010000042 DAXIFD010000000
VERSION     DAXIFD010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13474
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.042"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(210..932)
                     /gene="rmpM"
                     /locus_tag="ACFOCN_000852"
     CDS             complement(210..932)
                     /gene="rmpM"
                     /locus_tag="ACFOCN_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding outer membrane protein
                     RmpM"
                     /protein_id="HFC6970028.1"
                     /translation="MTKQLKLSALFVALLASGTAVAGEASVQGYTVSGQSNEIVRNNY
                     GECWKNAYFDKASQGRVECGDAVAAPEPEPEPEPAPVVVVEQAPQYVDETISLSAKTL
                     FGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVA
                     NNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRR
                     VDVKIRSIVTRQVVPAHNHHQH"
     gene            1296..2246
                     /locus_tag="ACFOCN_000853"
     CDS             1296..2246
                     /locus_tag="ACFOCN_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HFC6970029.1"
                     /translation="MKLQQLKYALEVYQHNLNVSEAAEALFTSQPGISKQIKLLEEEI
                     GIQIFIRSGKRVVSVSQPGKVVLDIAERILRDVQNIKNIGSEFTGQDSGSLTVATTHT
                     QARYALPLIVADFVKRYPKVNLTIKQGSPAAIARMVTSGEADLAIVTERIDDHPELGK
                     LPCYDWTHAVIVPNDHPLLECRNPLRIEDLARFPLITYEFAFNAGSSIARAFSKARLE
                     QPDVALAAADTDVLKTYVRLGLGVGLMAKMAYNPDTDGDLQLVDAAHLFEPSPTWIAL
                     RSDTYLRGYAYDFIQAFAPHLTREKVDRILYTPISEDFSI"
     gene            complement(2359..3093)
                     /gene="fnr"
                     /locus_tag="ACFOCN_000854"
     CDS             complement(2359..3093)
                     /gene="fnr"
                     /locus_tag="ACFOCN_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HFC6970030.1"
                     /translation="MASHNTTHQMKTLCSSCSLRELCLPVGLLPNELSQLDAVIRQSR
                     RLKKGEYLFCVGEAFTSLFAIRSGFFKTTVASQDGRDQVTGFFMSGELIGMDGICSHV
                     HSCDAVALEDSEVCELPFTHIEELGQNIPSLRTYFFRMMSREIVRDQGVMLLLGNMRA
                     EERIAAFLLNLSQRLYSRGFAANDFILRMSREEIGSYLGLKLETVSRTLSKFHQEGLI
                     SVEHKHIKILNLQVLKKMVSGCSHAI"
     gene            3298..4719
                     /gene="hemN"
                     /locus_tag="ACFOCN_000855"
     CDS             3298..4719
                     /gene="hemN"
                     /locus_tag="ACFOCN_000855"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HFC6970031.1"
                     /translation="MKIIQIQNNHNVNDDRPEFDRALIASLPASGPRYTSYPTADRFH
                     DGFREGEYIKALHLRGMGALNKPLSLYIHIPFCNTICYYCGCNKIITKDKSRADAYIE
                     YLEKEMELLAPHLNGRHQLAQLHFGGGTPTFLSDEQIERVFRMIRKHFELIPTGEYSI
                     EIDPRKVSRDTVLMLGRLGFNRMSIGIQDFDPKVQAAVNRIQSYEETKEVIDAAREAG
                     FKSVSVDLIYGLPHQTSESIKTTIDTVLSLDPDRLALYHYAHLPHVFKPQRRIDTASV
                     PDSEEKLDMLQYCVQTLTERGYVFIGMDHFAKPDDELSIALKEGFLQRNFQGYSTYAD
                     CDLVAIGVSSIGKIGSTYSQNERDIDAYYAAIDEGRLPIMRGYQLNQDDILRRNIIQD
                     LMCRFALDYRIYESMFGIPFDRYFKDELADLEKLAGLGLVRLNSHGLTVTPKGRFLIR
                     NIAMVFDYHLRHKETKAKYSQTV"
     gene            complement(5072..6646)
                     /locus_tag="ACFOCN_000856"
     CDS             complement(5072..6646)
                     /locus_tag="ACFOCN_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HFC6970032.1"
                     /translation="MAQIQMSANVKTINAVFAAMLVGTVGYFIYWGLGYTHYNYAALF
                     IIATMFGVFMAFNIGGNDVANSFGTSVGAGTLTIPQALLIAAVFEVSGAVIAGGEVTN
                     TIRKGIVDLKGVDFEPIQFVFIMMSALLAAALWLLFASKKGLPVSTTHSIIGGIVGSA
                     VCMAVMNDAASGDLIRWGKLGGIGVSWVLSPVLGGAVSYFLFSRVKKNVLDYNAWAEG
                     TLKGIKQEKKAYKERHRLFFEGLSEAEKVEYATKMAHDAQIYDEPEFDPQELQSEYYR
                     GLYAFDNRKNNVDSYKALHSWIPFIASFGAMMISAMLIFKGLKNLHLGMSNVNSFLTI
                     FMIGAAVWMGTFVFAKSLKRKDLGKSTFQMFSWMQVFTACGFAFSHGANDIANAIGPF
                     AAIMDVLRTNSVAAQNVVPPIAMLTFGIALIVGLWFVGKEVIKTVGTSLAEMHPASGF
                     TAELSAASVVMGASLMGLPVSSTHILVGAVLGIGLVNRNANWKLMKPIGLAWVITLPA
                     AAVLSVVCYLVLQAVF"
     gene            6971..8071
                     /locus_tag="ACFOCN_000857"
     CDS             6971..8071
                     /locus_tag="ACFOCN_000857"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HFC6970033.1"
                     /translation="METQLYIGIMSGTSMDGADAVLIRMDGGKWLGAEGHAFTPYPDR
                     LRRQLLDLQDTGADELHRSRILSQELSRLYAQTAAELLCSQNLAPSDITALGCHGQTV
                     RHAPEHGYSIQLADLPLLAERTRIFTVGDFRSRDLAAGGQGAPLVPAFHEALFRDNRE
                     TRAVLNIGGIANISVLPPDAPAFGFDTGPGNMLMDAWTQAHWQLPYDKNGAKAAQGNI
                     LPQLLDRLLAHPYFARPHPKSTGRELFALNWLETYLDGGENRYDVLRTLSRFTAQTVF
                     DAVSHAAADTRQMYICGGGIRNPVLMADLAECFGTRVSLHSTAELNLDPQWVEAAAFA
                     WLAACWINRIPGSPHKATGASKPCILGAGYYY"
     gene            8190..9131
                     /gene="mafA"
                     /locus_tag="ACFOCN_000858"
     CDS             8190..9131
                     /gene="mafA"
                     /locus_tag="ACFOCN_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6970034.1"
                     /translation="MKTLLLLIPLVLTACGTLTGIPAHGGGKRFAVEQELVAASSRAA
                     VKEMDLSALKGRKAALYVSVMGDQGSGNISGGRYSIDALIRGGYHNNPESATQYSYPA
                     YDTTATTKSDALSSVTTSTSLLNAPAAALTKNSGRKGERSAGLSVNGTGDYRNETLLA
                     NPRDVSFLTNLIQTVFYLRGIEVVPPEYADTDVFVTVDVFGTVRSRTELHLYNAETLK
                     AQTKLEYFAVDRDSRKLLIAPETAAYESQYQEQYALWMGPYSVGKTVKASDRLMVDFS
                     DITPYGDTTAQNRPDFKQNNGKNPDVGNEVIRRRKGG"
     gene            9135..10631
                     /gene="mafB"
                     /locus_tag="ACFOCN_000859"
     CDS             9135..10631
                     /gene="mafB"
                     /locus_tag="ACFOCN_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6970035.1"
                     /translation="MKPLRRLTNLLAACAVAAAAFGQPALAADLAQDPFITDNAQRQH
                     YEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLIQQAAIQGNLGYTVRFSGHG
                     HEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGA
                     RDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKL
                     DRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF
                     AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVLPFAKVKNLTKAAKPGKA
                     AVSGDFSAAYNTRTTRKVTTETEGLNRIRQNQKNSNIHEKNYGRDNPNHINVLSGNSI
                     QHILYGDEAGGGHLFPGKPGKTTFPQHWSASKITHEISDIVTSPKTQWYAQTGTGGKY
                     IAKGRPARWVSYETRDGIRIRTVYEPATGKVVTAFPDRTSNPKYNPVK"
     gene            10646..10876
                     /locus_tag="ACFOCN_000860"
     CDS             10646..10876
                     /locus_tag="ACFOCN_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6970036.1"
                     /translation="MKTLDERIKNLGKSLEDRIDANLIDAALEYITFSERLLAFETLC
                     DYIEDFNIQLTEKESQEISFINKEFGIESTSD"
     gene            11025..11702
                     /locus_tag="ACFOCN_000861"
     CDS             11025..11702
                     /locus_tag="ACFOCN_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hint domain-/BECR-fold containing toxin"
                     /protein_id="HFC6970037.1"
                     /translation="MVKTADGYKAIAHIQAGDRVLSKDEASGETGYKPVTARYGNPYQ
                     ETVYIEISDGIGNSQTLISNRIHPFYSDGKWIKAEDLKAGSRLYSESGKTQTVRNTVV
                     KPKPLKAYNLTVADWHTYFVKGNRAETEGVWVHNECPPRKTPSTPIYGNDSEAYAAAK
                     ELGYRKIKERTRNDAAIFKKGKSYISRDVDSHNGGAWKEASSPEKLNRKETRNGTFDK
                     NLNRIGD"
     gene            11708..12115
                     /locus_tag="ACFOCN_000862"
     CDS             11708..12115
                     /locus_tag="ACFOCN_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6970038.1"
                     /translation="MCEFKDFRRNIPCFKEYDENSFIGKWYDDGVWDDEEYWKLENDL
                     IEVRKKYPYPMDIPRDIVIGIGTIIDFLMVQNWKLFEIKASPWLPKSVKINERYERFR
                     VMLRYIFTDLDVEDWKFFYFPIQNSKGRLRRKV"
     gene            12137..12514
                     /locus_tag="ACFOCN_000863"
     CDS             12137..12514
                     /locus_tag="ACFOCN_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6970039.1"
                     /translation="MCEFKDIIRNVPYFEGYDENSFIGKWYDDGVWDDEEYWKLENDL
                     IEVRKKYPYPMDIPRYVVIGIGTIIDFLMVPNWKLFEIKASPWLPDSVGINERYERLK
                     TMLRYIFTEKDIVNVRFDYYNKK"
     gene            12556..12828
                     /locus_tag="ACFOCN_000864"
                     /pseudo
     CDS             12556..12828
                     /locus_tag="ACFOCN_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951299.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
     gene            13016..13471
                     /locus_tag="ACFOCN_000865"
     CDS             13016..13471
                     /locus_tag="ACFOCN_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970040.1"
                     /translation="MVDAVVKTPEFLPFTSVGIFRFGADITQYKNILETFMYEPPDEF
                     GTEYYESPDSNLLISVEKNKIISIFCYQELYFMGVNIIGLNFEDFKQLFHHPKSYGVD
                     KYYLSNESYPTYVYEFDEIGVQAWEAKGKIVTIIAGGKDNYSTEPYYDE"
BASE COUNT         3764 a         3598 c         3137 g         2975 t
ORIGIN      
        1 gcggcaatgg gacacaaacc tgaatctgaa tccgaacctg caccccgatt ctgacgatag
       61 ccgtttcaga aaaccaccca aaaaaacaaa ccccgcaaaa gcgggggttt gtttcacatc
      121 atcgatgccg accgacgttt cacgaatatt gcaacagtac ctggtacaaa atccactaac
      181 ctcatgcatc ggcaagatat tgcctagcct tagtgttggt gatgattgtg tgccggcaca
      241 acctgacggg ttacgatgct gcggattttc acatccacac ggcggtcagg ttcgatacat
      301 gcaatcagag cctcacgttt tttggcttta gagactttcg cacccagttt ggcaacttcg
      361 gcttcacaaa cttgagtcat ttgcgcttga gattcgccca agccgacagc agaaattcta
      421 gaaacaggta cgccgttgct gaccaggttg tttgccacta cgtatgcgcg gcgttcggac
      481 agggcctgat tgtatttgtc agaacccata aagtcggtat ggccttcgac gcggacagat
      541 tggatattgg tttgacccag gcgttgcgcc aatactttca ggttgtcttg agcttcggcg
      601 cgcaatgaat ccttatcgaa accgaacagg gttttggcag acagggaaat ggtttcatca
      661 acatattgcg gagcctgctc cacaacgacg acaggagcgg gttcgggttc tggctcgggt
      721 tcgggggcag caaccgcatc gccgcattct acgcgacctt ggcttgcttt atcaaagtag
      781 gcgtttttcc agcattcgcc atagttgttg cgtacgattt cgttcgactg gccgcttacg
      841 gtgtaaccct gaacggacgc ctcgcccgca acagcagtgc cggaagcgag caatgcaacg
      901 aataatgcgc ttaatttcag ctgtttggtc attttattcc ctcattaaat ttgtacagca
      961 gatacagaag caactgctga attgccaaca tacaggccgc tgtagaaaca tggcggcaaa
     1021 tcggatattt cagtctccac tataaagaag cagggggagg actgtcaata ctcaacgcct
     1081 gaaaacaacc gtaaaacagc ctgtttcctg atagtctatc atgccgaaaa atcaattccg
     1141 tgtcattact ttagggggat tttttccata tcgcacgatt gccgttgcac aaaaacaaca
     1201 aacacaacgg caaagcccca taccgtaccg gcaagaaaat atgataaatt ataaacaatg
     1261 ttcagccacc cgacacagac ccacaccgac ccgccatgaa attacaacaa ttgaaatacg
     1321 ccttagaagt ttaccagcac aacctgaacg tttccgaagc ggccgaagcc ttgtttactt
     1381 cgcaacccgg catctccaaa caaatcaaat tgctggaaga agaaatcggc attcagattt
     1441 ttatccgcag cggcaagcgc gtggtttcgg tctcgcagcc gggcaaggtg gttttggata
     1501 ttgcggaacg tattttacgc gatgtacaga acattaaaaa tatcggcagc gagtttaccg
     1561 gacaggacag cggttcgctg acggttgcca cgacgcatac tcaggcacgc tatgccctac
     1621 ccttgattgt tgccgatttt gtgaaacgct atccgaaagt caacctgacc atcaaacagg
     1681 ggagccctgc cgccatcgca cgtatggtta cctcaggcga ggcggacttg gcgattgtta
     1741 cggaacggat agacgaccat cccgaactgg gaaaacttcc ctgctatgac tggactcatg
     1801 cggttatcgt accgaacgac caccccttgc tcgaatgcag aaaccccctc cgcattgaag
     1861 atttggcgag gtttccgctg attacttatg aatttgcatt caatgcgggc agcagcatcg
     1921 cgcgggcatt ttccaaagcc cgtttggaac agccggatgt cgcattggcg gcggcggata
     1981 cggacgtatt gaagacttat gtgcgcttgg gtttgggcgt gggactgatg gcgaaaatgg
     2041 cgtacaaccc ggatacggac ggcgatttgc agcttgtgga tgcggcacac ctgttcgagc
     2101 cgtcgccgac gtggattgct ttgcgcagcg atacttattt gcgcggatat gcctacgact
     2161 ttatccaagc gtttgcgccg cacctgacac gcgagaaggt ggataggatt ctgtacacgc
     2221 ccatcagcga ggatttttcg atttaggcgg ctgccggttt tcagacggca ctttgcggca
     2281 gatacaacaa acaggacaga tgttttcgtc tgccctgtgt ttattgagaa tgccgtctga
     2341 aatgttcgta cgggttaatc aaatggcgtg cgaacaaccg gataccatct tcttcaacac
     2401 ctgcagattg aggatcttga tgtgtttgtg ttcgacggaa atcaatcctt cctgatgaaa
     2461 tttagataat gtgcggctga cggtttcaag tttcagcccg agataactgc cgatttcttc
     2521 gcgggacatt cttaagatga agtcgttggc agcaaaacct cgggaataaa ggcgttggga
     2581 aaggttcaac agaaaggcgg caatccgctc ttcggcgcgc atattgccca acagcagcat
     2641 aacaccttgg tcgcgcacga tttcacgact catcatgcgg aaaaagtagg tacgcaggct
     2701 ggggatattc tgccccagtt cttcgatgtg ggtaaacggc agttcgcaca cttcgctgtc
     2761 ttccaaggcg accgcgtcgc aactgtgcac atgggaacag atgccgtcca tgccgatgag
     2821 ttcgcccgac ataaagaaac ccgttacctg atcgcggccg tcctgactgg cgacggttgt
     2881 tttgaagaag cccgaacgga tggcaaagag cgaggtaaag gcttcgccga cacagaacag
     2941 gtattcgccc tttttcaggc ggcggctttg acggatgacg gcatcgagtt ggctgagctc
     3001 gttgggcagc agcccgacag gcaggcagag ttcccgcaaa gaacaggaag aacacagcgt
     3061 tttcatctga tgtgtagtat tatgcgaagc cataccgtac ctttttgtgc gctttgcccc
     3121 atcatgatta tagtggatta aatttaaacc agtacggcgt tgcctcgcct tgtccttatt
     3181 taaatttaat ccactatatg tgcttattga cacatatcaa gacaggttta tcatactgtg
     3241 gcattctacc aaactatcca aaatttgact aacatcataa aaccgcacac acacaccatg
     3301 aaaatcattc agatacagaa caatcacaat gtaaacgatg accgccccga gtttgaccgc
     3361 gcgctgattg ccagcctgcc cgccagcggc ccgcgctaca cttcctaccc taccgccgac
     3421 cgtttccatg acggtttccg cgaaggcgaa tatatcaaag ctttacattt gcgcggtatg
     3481 ggcgcgttaa acaaaccgct ttccctttac attcacattc cgttctgcaa caccatctgc
     3541 tactactgcg gctgcaacaa aatcatcacc aaagacaaaa gccgcgccga tgcctacatc
     3601 gaatatcttg aaaaagaaat ggaactgctc gctccacatc tgaacggacg gcaccagctt
     3661 gcccaactgc acttcggcgg cggcacgccg acctttttga gcgacgaaca gatcgaacgt
     3721 gtcttccgca tgatacgcaa acatttcgag ttaatcccca ccggcgaata ctccatcgaa
     3781 atcgacccgc gcaaagtcag ccgcgacacc gtcctcatgc tcggcagact cggcttcaac
     3841 cgcatgagca tcggcattca ggatttcgac cccaaagtgc aggcagcggt caaccgcatc
     3901 caaagttacg aagaaaccaa agaagtcatc gatgcggcgc gcgaagcggg gttcaaatcc
     3961 gtcagcgtcg atttgattta cggcctgccg caccagactt cggaaagcat caaaaccacc
     4021 atcgataccg ttttgtcgct cgatcccgac cgcctcgccc tttatcacta cgcccacctg
     4081 ccgcacgtgt tcaaaccgca acgccgcatc gataccgcct ccgtccccga cagcgaagag
     4141 aagctcgata tgctgcaata ctgcgtccaa accctaaccg aacgcggcta cgtcttcatc
     4201 ggcatggatc atttcgccaa acctgacgac gaactctcca tcgccctcaa agaaggcttc
     4261 ctccagcgca acttccaagg ctattcgacc tacgcggatt gcgatttggt cgccatcggc
     4321 gtgtcgtcca tcggcaaaat cggcagcacc tattcccaaa acgaacgcga catcgatgcc
     4381 tactatgccg ccatcgacga aggcagactg cccatcatgc gcggttatca gctcaatcag
     4441 gacgacatcc tgcgccgcaa tatcattcag gatttgatgt gccgcttcgc gctcgactac
     4501 cggatttacg aaagtatgtt cggcatcccg ttcgaccgct acttcaaaga cgaactggcg
     4561 gatttggaaa aactcgccgg tttgggattg gtgcgcctga acagccacgg gctgaccgtt
     4621 accccgaaag gacgcttcct catccgcaac atcgccatgg tgttcgacta ccacctgcgc
     4681 cacaaggaaa ccaaggcgaa atattcgcaa acggtgtgat tgcgtctaac gtacaaatgc
     4741 cgtctgaaag gctttttcag acggcatttt gctgccggca ggataagtgt tttcaagaac
     4801 aggcggcggc atatcataac gttccgcacc tttgtgtccg accgttccga aaccaagata
     4861 tagtggatta acaaaaacca gtacagcgtt gcctcgcctt gccgtactat ctgtactgtc
     4921 tgcggcttcg tcgccttgtc ctgatttttg ttaatcacta taccaaacgg catatcccga
     4981 cagaacagat tgtgcataag gcacaagccc gcacattcca tcaacaaaat gccgtctgaa
     5041 cacgggttca gacggcatca gtattttaca atcagaatac tgcctgtaaa accaagtagc
     5101 agacaaccga caatacggcg gcggcaggca gggtaatgac ccacgccaaa ccgatgggct
     5161 tcatcagttt ccagttggca ttgcggttga ccagaccgat gccgagtacc gcgccgacca
     5221 agatatgcgt actggacacg ggcagcccca tcagcgacgc gcccatcacg acggatgcgg
     5281 cggacagttc ggcggtaaaa cccgaggcgg ggtgcatttc cgccaaactc gtaccgacgg
     5341 ttttaatcac ctctttaccg acaaaccaca aaccgacaat cagcgcgatg ccgaaagtca
     5401 gcatcgcaat cggggggacg acattttgcg cggcaacgct gttggtacgc aaaacatcca
     5461 taatcgcggc aaacggaccg atggcgttgg cgatatcgtt cgccccgtgg ctgaatgcga
     5521 agccgcaggc ggtaaagacc tgcatccatg aaaacatctg aaaggtcgat ttgcccaagt
     5581 ctttacgctt gaggcttttg gcaaacacaa acgtccccat ccacaccgcc gcgcctatca
     5641 taaagatggt caggaagctg ttgacgttgc tcatccccaa atgcaggttt ttcaagccct
     5701 tgaaaatcag catagcggaa atcatcatcg cgccgaacga agcgataaag ggaatccaag
     5761 aatgcagtgc tttgtaggaa tcgacattgt ttttacggtt gtcgaacgca taaagaccgc
     5821 ggtaatactc cgattgcagc tcttgcggat cgaattcggg ttcgtcgtaa atttgcgcgt
     5881 cgtgcgccat tttggtggcg tactcgactt tttcggcttc ggacaaaccc tcgaaaaaca
     5941 ggcggtgccg ttctttatag gccttttttt cctgcttgat gcccttgagc gtgccttccg
     6001 cccaagcgtt gtaatctaag acgtttttct tgacgcgcga aaacaggaaa taggacaccg
     6061 cgccgcccaa cacgggcgac aatacccaag aaacaccaat accgcccagc ttgccccaac
     6121 gtatcaaatc gcccgatgcg gcatcgttca ttaccgccat acataccgcg ctgccgacaa
     6181 tgccgccgat aatggaatgg gtggtagata ccggaagccc ttttttcgag gcaaacaaca
     6241 gccacaacgc cgccgccaaa agcgcggaca tcataataaa cacaaactgt atgggttcga
     6301 aatcaacacc cttcaaatcg acgatgcctt tgcgtatggt attggttacc tcgccgcccg
     6361 cgatgaccgc gccgctgacc tcaaataccg ccgcaatcag caaagcctgc gggatggtca
     6421 gcgtacccgc accgacgctg gtgccgaaag aattggcaac atcgttgccg ccgatgttga
     6481 acgccataaa cacgccgaac atcgtggcaa taatgaataa ggcggcgtaa ttgtaatggg
     6541 tataacccaa gccccaataa ataaaatagc cgactgtacc taccagcatg gcggcaaaga
     6601 cggcgttgat ggttttaaca tttgcgctca tttggatttg agccatggca atcttccttt
     6661 aatgtggtgg aaatcatgag tgttgccgac actgtactgc tgcctccggt cgaactgccg
     6721 tttcgggata tggcagacgc atccttcctt ctgaaccgca tccaaatacc cccaaacctg
     6781 accgaatgca aaactgctgc cggaaacggt ttgtatgaca cttctactac tggatgttgc
     6841 gggcgcatta taatattttt ccatccgtct tgaaacattt atttacactt tatttacact
     6901 gcggcggcaa atcggtatac gagcgtcaat acacgttaaa atggcgtttt gcaccagttt
     6961 gggagtgatg atggaaacac agctttacat cggcatcatg tcgggaacca gcatggacgg
     7021 ggcggatgcc gtactgatac ggatggacgg cggcaaatgg ctgggcgcgg aagggcacgc
     7081 ctttaccccc tatcccgaca ggctgcgccg ccaattgctg gatttgcagg acacaggcgc
     7141 agacgaactg caccgcagca ggattttgtc gcaagaactc agccgcctgt acgcgcaaac
     7201 cgccgccgaa ctgctgtgca gtcaaaacct cgcaccatcc gacattaccg ccctcggctg
     7261 ccacgggcaa accgtccgac acgcgccgga acacggttac agcatacagc ttgccgattt
     7321 gccgctgctg gcggaacgga cgcggatttt taccgtcggc gacttccgca gccgcgacct
     7381 tgcggccggc ggacaaggcg cgccactcgt ccccgccttt cacgaagccc tgttccgcga
     7441 caacagggaa acacgcgcgg tactgaacat cggcgggatt gccaacatca gcgtactccc
     7501 ccccgacgca cccgccttcg gcttcgacac agggccgggc aatatgctga tggacgcgtg
     7561 gacgcaggca cactggcagc ttccttacga caaaaacggt gcaaaggcgg cacaaggcaa
     7621 catattgccg caactgctcg acaggctgct cgcccacccg tatttcgcac gaccccaccc
     7681 caaaagcacg gggcgcgaac tgtttgccct aaattggctc gaaacctacc ttgacggcgg
     7741 cgaaaaccga tacgacgtat tgcggacgct ttcccgtttt accgcgcaaa ccgttttcga
     7801 cgccgtctca cacgcagcgg cagatacccg tcaaatgtat atttgcggcg gcggcatccg
     7861 caatcctgtt ttaatggcgg atttggcaga atgtttcggc acacgcgttt ccctgcacag
     7921 caccgccgaa ctgaacctcg atcctcaatg ggtggaggca gccgcatttg cgtggttggc
     7981 ggcgtgttgg attaaccgca ttcccggcag cccgcacaaa gcaaccggcg catccaaacc
     8041 gtgtattctg ggcgcgggat attattattg agcgcaaata ccgtctgaaa gccatttccg
     8101 ccgctcagac ggcattttcg ccccttttgt ttacaaaccc ttaaaatcca tttacactca
     8161 aactcgttca aaacaaaaca aaccctgcca tgaaaaccct gcttctcctc atccccctcg
     8221 tcctaaccgc ctgcggcaca ctgaccggca tacccgccca cggcggcggc aaacgctttg
     8281 ccgtcgaaca agaactcgtc gccgcatcgt cccgcgccgc cgtcaaagaa atggatttgt
     8341 ccgccctgaa aggacgcaaa gccgcccttt acgtctccgt tatgggcgac caaggttcgg
     8401 gcaacataag cggcggacgc tactctatcg acgcactgat acgcggcggc taccacaaca
     8461 accccgaaag tgccacccaa tacagctacc ccgcctacga cactaccgcc accaccaaat
     8521 ccgacgcgct ctccagcgta accacttcca catcgctttt gaacgccccc gccgccgccc
     8581 tgacgaaaaa cagcggacgc aaaggcgaac gctccgccgg actgtccgtc aacggcacgg
     8641 gcgactaccg caacgaaacc ctgctcgcca atccccgcga cgtttccttc ctgaccaacc
     8701 tcatccaaac cgtcttctac ctgcgcggca tcgaagtcgt accgcccgaa tacgccgaca
     8761 ccgacgtatt cgtaaccgtc gacgtattcg gcaccgtccg cagccgtacc gaactgcacc
     8821 tctacaacgc cgaaaccctt aaagcccaaa ccaagctcga atatttcgcc gtcgaccgcg
     8881 acagccggaa actgctgatt gcccctgaaa ccgccgccta cgaatcccaa taccaagaac
     8941 aatacgccct ctggatggga ccttacagcg tcggcaaaac cgtcaaagcc tcagaccgcc
     9001 tgatggtcga tttctccgac atcaccccct acggcgacac aaccgcccaa aaccgtcccg
     9061 acttcaaaca aaacaacggt aaaaaccccg atgtcggcaa cgaagtcatc cgccgccgca
     9121 aaggaggata aaccgtgaaa ccgctgcgca gactgacaaa cctccttgcc gcctgcgccg
     9181 tagcggccgc cgccttcgga cagcccgccc tcgcagcgga cttggcgcaa gacccgttca
     9241 ttaccgataa cgcccaacgg cagcactacg aacccggcgg caaataccac ctcttcggcg
     9301 acccgcgcgg cagcgtctcc gaccgcaccg gtcaaatcaa cgtcatccaa gactataccc
     9361 accagatggg caacctgctc atccaacagg cggcaatcca aggcaatctt ggttacaccg
     9421 tccgcttttc cggacacgga cacgaagaac acgccccctt cgacaaccac gccgccgaca
     9481 gcgcaagcaa agaacaaggc aacgttgacg aaggctttac cgtgtaccgg ctcaactggg
     9541 aaggacacga acatcatccc gccgatgcct acgacggccc gaagggcggc aattacccca
     9601 aacctacggg cgcacgagac gaatacacct atcacgtcaa cggcacagcc cgcagtatca
     9661 aactcaatcc gaccgacacc cgcagcatcc ggcaacgcat atccgacaac tacaacaacc
     9721 tcggcagcaa tttctccgac cgcgccgatg aagccaacag aaaaatgttc gagcacaatg
     9781 ccaagctcga ccgctggggc aacagcatgg agtttatcaa cggcgtcgcc gccggcgcgc
     9841 tcaacccctt tatcagcgcg ggcgaagcct tgggcatagg cgacatactg tacggaacgc
     9901 gctatgccat agacaaagcc gcaatgcgca acatcgcccc cttgcccgcc gagggcaaat
     9961 tcgccgtcat cggcggcttg ggcagcgtgg cgggctttga aaaaaatacg cgtgaagccg
    10021 ttgaccggtg gatacaggaa aaccccaatg ccgccgaaac cgtcgaagcc ctggtcaacg
    10081 tcctgccgtt tgccaaagtc aaaaacctga caaaggcggc aaaaccgggg aaggctgcgg
    10141 ttagcgggga tttttctgct gcatacaata caagaacaac tagaaaagtt actacagaaa
    10201 cagaggggtt aaatagaatc agacagaacc agaaaaatag taatatacat gagaaaaatt
    10261 atggaagaga taatcctaat catattaatg ttttatctgg aaattctata caacatatac
    10321 tgtatggaga tgaagcagga ggtgggcatc tttttcctgg caaacctggt aagacaacat
    10381 tcccccaaca ttggtcagcc agtaaaataa ctcatgaaat tagtgatatc gttacatccc
    10441 caaaaacgca atggtatgca cagactggaa caggcggcaa atatattgct aaaggaagac
    10501 cagccaggtg ggtatcatat gaaacgagag atggaattcg tatcagaaca gtttatgaac
    10561 ctgcaacagg aaaagtggta actgcattcc ccgatagaac ctctaatccc aaatataacc
    10621 ctgtaaaata atgagtattt gaaagatgaa aacattagac gaacgaataa aaaatttagg
    10681 aaaatctctt gaagatagaa ttgacgctaa tctaattgat gccgcactag agtacattac
    10741 tttttcagaa cgtttgctag cttttgaaac gctatgtgat tatatagaag atttcaatat
    10801 ccagcttacg gaaaaagaat cccaagaaat ctcttttatt aataaggaat ttggaattga
    10861 aagtacatca gattaataaa tattaggtcg gtttaaaaac ccaacaatca aaaagtcgtc
    10921 tgaaactgtg tttaatttac agacgacctt tccttcattt gaagcaggat attgagaact
    10981 gagttcttca aaaatcctac acctgctcct tccacggcag caccttggtc aaaacggcag
    11041 acggctacaa agccattgcc catattcaag ccggagaccg cgtcctttcc aaggacgagg
    11101 caagcggaga aacgggatac aaacccgtta ccgcccgata cggcaatccc tatcaagaaa
    11161 ccgtttacat tgaaatttca gacggcatcg gcaacagtca aaccctgatt tccaaccgca
    11221 tccatccgtt ttattcggac ggcaaatgga ttaaggcgga agatttaaaa gcgggaagca
    11281 ggctgtattc cgaaagcggc aaaacccaaa cagtccgcaa caccgttgtc aaaccaaaac
    11341 cgctcaaagc ctacaatctg accgttgccg attggcatac ttactttgtc aagggcaatc
    11401 gggcggaaac ggaaggggtt tgggttcata atgagtgtcc gccaagaaaa acaccatcta
    11461 cccccatata tgggaatgat tcagaagcat atgcagcagc aaaggaattg ggatatagaa
    11521 aaataaaaga aagaacgaga aatgatgctg ctatttttaa aaaaggaaag agttatatat
    11581 cacgcgatgt agattcacat aatggaggtg cttggaaaga ggcatcttca cccgaaaaac
    11641 tgaacagaaa agaaacaaga aacggtacat ttgataaaaa cctaaatcgt attggagatt
    11701 aattattatg tgcgagttca aggattttag aagaaacatc ccttgtttta aggagtatga
    11761 cgaaaattca tttattggca aatggtatga tgacggggtg tgggatgatg aagaatattg
    11821 gaaattggag aatgatttaa ttgaggttag aaaaaaatat ccttatccga tggatatacc
    11881 aagggacatc gtgattggaa tcggtaccat tattgatttt ttaatggttc aaaattggaa
    11941 actttttgaa attaaagctt ctccttggtt gcctaaaagt gtcaaaatta atgagcgtta
    12001 tgaaaggttc agggtaatgc tccgttatat ttttactgat ctagatgtag aggactggaa
    12061 atttttttac tttccaatac aaaatagtaa aggtagattg agacgaaaag tttaattata
    12121 ttggagatac attattatgt gtgagttcaa ggatattata agaaacgttc cttattttga
    12181 ggggtatgac gaaaattcat ttattggcaa atggtatgat gacggggtgt gggatgatga
    12241 agaatattgg aagttggaga atgatttaat cgaggttaga aaaaaatatc cttatccgat
    12301 ggacatacca agatatgttg tcattggaat cggtaccatt attgatttct taatggttcc
    12361 aaattggaaa ctttttgaaa ttaaagcttc cccttggcta cctgatagcg tgggaattaa
    12421 cgaacgttat gaaaggctta aaacaatgct ccgttatatt tttaccgaga aagacatagt
    12481 caacgtgcga tttgattatt acaacaaaaa atagcaaaac ccggcaatca aaatgccgtc
    12541 tgaagcgata tccggctttc agacggcatc ggcaacagcc aaaccctgat ttccaaccgc
    12601 atccactcgt tttattcggg cggcaaatgg attaagacgg aagatttgaa agcgggaatc
    12661 aggctgttat ccgaaagcgg caaaacccaa accgtccgca acatcgttgt caaaccaaaa
    12721 ccgctcaaag cctacaatct gaccgttgcc gattggcata cctactttgt caaaggcaat
    12781 cgggcggaaa cggaaggagt ttgggttcat aatgcgtgtc cgcccaaaag aacaggaagc
    12841 tccaagaatg aaaaacatgg agacgacggt cgaagtcaaa tatcagcgga atcaagaatt
    12901 gctgaattaa aaaataaaat tattcccgga atgcccaaaa atgaacgctt aaagattgag
    12961 caaaaaatca aaaatattac aaaaaatgcc aatcgaaaag caaaaggaga agagcatggt
    13021 cgacgcggtc gttaaaactc ccgaattttt accttttact tctgtaggaa tattccgttt
    13081 tggtgctgat ataacacagt acaaaaacat actggaaact tttatgtatg aacctcctga
    13141 tgagtttgga acagaatatt atgaatctcc cgactcaaat ttactcattt ccgtcgaaaa
    13201 aaacaaaatt atttcgatat tttgttatca ggagctatat tttatgggcg ttaatataat
    13261 aggtctgaat tttgaagatt ttaaacagct tttccatcac cctaaatcat acggtgttga
    13321 taaatattat ttatcaaatg aatcttatcc gacatatgtc tatgagtttg atgaaatagg
    13381 agtacaagct tgggaagcaa aagggaaaat tgttactatc attgccgggg gcaaagacaa
    13441 ttattcgaca gaaccttact acgatgaata acat
//
LOCUS       DAXIFD010000043        12917 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.043, whole genome shotgun sequence.
ACCESSION   DAXIFD010000043 DAXIFD010000000
VERSION     DAXIFD010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12917
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.043"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            52..1005
                     /locus_tag="ACFOCN_000866"
     CDS             52..1005
                     /locus_tag="ACFOCN_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HFC6970041.1"
                     /translation="MTHTVHLHLEETDNLALQRLCGSFDNNLDLLAKALDIHISRRFE
                     HFTFNGAFAHAGKRALLKLLETAQTRDLNDGDIRLAAVEAQTEDAGHQEKNHDHAYYF
                     RTKRGSIGGRTPRQNGYIRALLNHDIVFGLGPAGTGKTYLAVAAAVDAMEKHQVERII
                     LVRPAVEAGEKLGFLPGDLTQKVDPYLRPLYDALYDLMGFDRVSKLIEKGLIEIAPLA
                     YMRGRTLNGAYIILDEAQNTTPEQMKMFLTRIGFGAKAVITGDTSQIDLPKNIKSGLK
                     DAREKLHNVEGLYFHTFTGEDVVRHPLVQKIVEAYESAEHD"
     gene            complement(1109..1432)
                     /locus_tag="ACFOCN_000867"
     CDS             complement(1109..1432)
                     /locus_tag="ACFOCN_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970042.1"
                     /translation="MKKCILGILTACAAMPAFADRIGDLEARLAQLEHRVAVLESGSN
                     TVKIDLFGSNSTMYVCSVTPFQKTFEASDRNEGVARQKVRQACNRETSAMFCEDEAIR
                     CRKFD"
     gene            complement(1605..2966)
                     /locus_tag="ACFOCN_000868"
     CDS             complement(1605..2966)
                     /locus_tag="ACFOCN_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HFC6970043.1"
                     /translation="MLKKWLNKMLPSGRSSKKAESKTVIPAERHNIRAEMLSFAAENV
                     IRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV
                     HVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPEKE
                     EILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTAPIAE
                     SICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIAGK
                     MTVLALKNTDERLRADKSVSVGFVLAALMWPELERHWKSNLQQGLKPAPALSDAINTM
                     RETVERGWGVPQRFSATMREIWMFQPQFENRKGARPHKLFAQARFRAAYDFLLLRAET
                     GNADRALAEWWTAFQTASQEQRTEMTKNEAAARHEKNEGQAKKRRRRRRKPKPKVEGT
                     DWE"
     gene            complement(3327..5027)
                     /gene="recJ"
                     /locus_tag="ACFOCN_000869"
     CDS             complement(3327..5027)
                     /gene="recJ"
                     /locus_tag="ACFOCN_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HFC6970044.1"
                     /translation="MSVKIQTRSINTDVFNHLLTAGADPLIARLCASRGVQSPAELDD
                     KLAALLPYQTLTNCEAAAGRLADAVGRKEKILIVADYDADGATACAVGLDGLAAMGAK
                     VDFLVPNRFEHGYGLTPELAEIAAAQGVDLLITVDNGIASIAGVARAQALGLDVIVTD
                     HHLPADTVPDCIIVNPNQKGCGFQSKSLAGVGVIFYVLTALRAELRRRNYFSDGLKEP
                     NLGDLLDLVALGTVADVVPLDHNNRILVSQGLKRMRSGKMRPGIRALFEVARRDWRKA
                     QPFDMGFALGPRINAAGRLDDMSVGIACLLARDDSEAQELAAQLNNLNIERREIEQSM
                     LQDALNAFPETLPSGQTTLVAYRDDFHQGVVGIVASRLKDRFYRPTIVFAPADNGEVR
                     GSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILEHNIPAFQTTFEEAVRE
                     MVCEDDLSQTFITDGSLPACDITLEQAQNLARHVWGQGFAPPSFTDEFHVVRQQPLGA
                     EGKHKKVWLQKDGCEFEAMFWRCSEDIPEYIRTVYRPVANEWRNNLELQLYIDYWEAV
                     "
     gene            complement(5096..5814)
                     /locus_tag="ACFOCN_000870"
                     /pseudo
     CDS             complement(5096..5814)
                     /locus_tag="ACFOCN_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5861..6367)
                     /gene="yjgA"
                     /locus_tag="ACFOCN_000871"
     CDS             complement(5861..6367)
                     /gene="yjgA"
                     /locus_tag="ACFOCN_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HFC6970045.1"
                     /translation="MFEQEDEWVSKTQMKKQMNGLQDLGMELTKLSSDTLKKIGLDED
                     LYEAVVTYKKITSNGALKRQAQFIGRLMRDTDPAPIEAFLAKLRGDDAAHNAFLQRVE
                     RTRMELLADDGALTQFMSDFPHADAGKLRTLIRNTKKEQEQNKPPKNFRALFQELKTV
                     MENGDAEI"
     gene            6522..7853
                     /gene="pmbA"
                     /locus_tag="ACFOCN_000872"
     CDS             6522..7853
                     /gene="pmbA"
                     /locus_tag="ACFOCN_000872"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HFC6970046.1"
                     /translation="MLFNHTASELLDLCRRTLDLAKAAGATAAEADFSESIGQSVSVR
                     LGEIEQIEFQQDKSLDITVYVGKRKGRAGTADFSEQALRDTVRAAADIARHTAEDGCA
                     GLADPELMAQHIGDPDLYHEWDLDTEAAVGFAKQCEQAALNEDERIENSEGAAVQTGH
                     YQYVYGNTHGFAAHRQGTHHSISCSVVAADENGMQRDYWYDSACRHPDMDSPETIGQT
                     AARRTLRRLGSRSIPTGSYPVLFDTTVSGGLIGHLVGALSGGALYRQSSFLIDSIGKK
                     VLPDFLNLREEPHIPRSFRSSYFDAEGVATAPRFVIQNGIVEGYFLSSYSARKLGMQT
                     TGNAGGAHNLYLNHTHETQSDLLKEMGTGLLVTELMGQGANTITGDYSRGAAGFWVEN
                     GVIAYPVHEITVAGRLQDMYRDIVGVADDALRRSSNKIGSILIAGMTVAGS"
     gene            complement(8150..8353)
                     /locus_tag="ACFOCN_000873"
     CDS             complement(8150..8353)
                     /locus_tag="ACFOCN_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HFC6970047.1"
                     /translation="MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKE
                     GQRVSFDVTTGPKGKQAANIQAA"
     gene            8596..8898
                     /gene="clpS"
                     /locus_tag="ACFOCN_000874"
     CDS             8596..8898
                     /gene="clpS"
                     /locus_tag="ACFOCN_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HFC6970048.1"
                     /translation="MTAQHQSDTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEI
                     FMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI"
     gene            8900..11197
                     /gene="clpA"
                     /locus_tag="ACFOCN_000875"
     CDS             8900..11197
                     /gene="clpA"
                     /locus_tag="ACFOCN_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HFC6970049.1"
                     /translation="MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDASVPNV
                     LKLCGADLKVVSEQLAASVAENTPLIPEHLLDTVETRPTLGFQRVMQRAMVHTQSAGK
                     AAVEPLDVLVALMSETDSHTVYFLKLQSVTRFEVLRCIAHGSPDEDEDEDDGNYSSDG
                     MDDDNENRAKPGKNPLSAYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPL
                     LVGEAGVGKTALAEGLAHQIVNGGIPDALKDAEVYALDMGSLLAGTKYRGDFEARVKS
                     VLKQLEKIPHAILFIDEIHTIIGAGSTSGGTMDASNLLKPALAKGSLRCIGATTYDEY
                     RTIFDKDHALSRRFQKIDVVEPTVSETVQILRGLKPMFEAFHQVRYTQGALEAAAELS
                     ARYINERFLPDKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVSRIPEKTVSH
                     DDKQVLQFLGRDLKNMVYGQENAIDALVAAVKMSRSGLALPDKPIGSFLFSGPTGVGK
                     TEAAKQLAYSLGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC
                     VLLLDEIEKAHPDIFNVLLQVMDAGKLTDNNGKSADFRNVILIMTTNAGAESLSRPSL
                     GFTAKRERGDEMQAINKLFTPEFRNRLDAIIPFAPLSEPIIVKVVDKFLLQLEHQLLD
                     KKVEAEFTSALHKYLAEKGFDPQMGARPMHRLIQEKIRKPLADELLFGKLSDGGFVRI
                     DWDAAKEEAVLKFKKSKVKIKTASA"
     gene            complement(11261..12265)
                     /gene="rfaD"
                     /locus_tag="ACFOCN_000876"
     CDS             complement(11261..12265)
                     /gene="rfaD"
                     /locus_tag="ACFOCN_000876"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HFC6970050.1"
                     /translation="MTIIVTGAAGFIGSNIVKALNQRGITDIVAVDNLSKGEKFKNLA
                     ECEIAHYLDKHEFIRQVREHILPYQNIEAVFHQGACSDTMNHDGLYMMENNYQYTLDL
                     LNWCQDERIPFLYASSAAVYGKGEIFREERELEKPLNVYGYSKFLFDQVLRRRMKEGL
                     TAQVVGFRYFNVYGQHEQHKGRMASVTFHHFHQYREHGYVNLFGSNDGYGNGEQTRDF
                     VSVEDVAKVNLYFFDHPELSGIYNLGTGRSQQFNELAAATVNACRAAEGKPEMSLKEL
                     VEEELIRYIPFPDALKGKYQSFTQADITKLREAGYKEEFFDVKSGVDRYVKWMLENLA
                     "
     gene            complement(12306..>12917)
                     /locus_tag="ACFOCN_000877"
     CDS             complement(12306..>12917)
                     /locus_tag="ACFOCN_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6970051.1"
                     /translation="RKIVLPKISYLSILKLLPVKDIEDSEPLFYFRIFLDYQFRSIVH
                     PQLLSREKLEIPASEFNQFVEQEIIKQKSRKGQQKYRKDVINHMPQCPFTLITDEVLL
                     RASHIKPYMVCITEKNEKEALDYLNGLALTPTYDWLFDQGYITFLDDGRLICGTRLSR
                     YTWEKLNINPNAKNKMRIYPEGREKYLEYHRKFVFQDNIDDFL"
BASE COUNT         3100 a         3643 c         3213 g         2961 t
ORIGIN      
        1 taatccacta tagattaaaa tcacacaata tccaactatt cggaccttca tatgacacat
       61 accgtccacc tgcatttaga agaaaccgac aacttggcgt tgcagcgtct gtgcggttct
      121 tttgacaaca accttgattt acttgctaaa gcactcgata tccacatcag ccgccgtttt
      181 gaacatttca ctttcaacgg cgcatttgca cacgccggca aacgcgcact gctcaaactc
      241 ttggaaacgg cgcagacgcg cgacctaaac gacggcgaca tcaggcttgc cgccgtcgaa
      301 gcccaaaccg aagatgccgg tcatcaagaa aaaaaccatg accacgccta ttatttccgc
      361 accaagcgcg gcagcatcgg cggcagaacg ccacggcaga acggctatat ccgcgcccta
      421 ctcaaccacg acatcgtatt cggtctcggg ccggcaggta cgggcaaaac ctatcttgcc
      481 gtcgccgccg ccgtcgatgc gatggaaaaa caccaagtcg aacgcatcat tttagtgcgg
      541 cctgccgtcg aagccggcga gaaactgggc tttctgcccg gagacctgac ccaaaaagtc
      601 gacccctacc tccgtccgct ttatgacgcg ctttacgacc tgatgggctt cgaccgcgtc
      661 agcaaactga ttgaaaaagg cctgattgaa atcgccccgc tcgcctatat gcgcggcagg
      721 acgctcaacg gcgcatacat catcctcgac gaagcgcaaa acaccacgcc cgaacaaatg
      781 aaaatgttcc tgacccgcat cggcttcggc gcgaaagccg tcattaccgg cgacaccagc
      841 caaatcgacc tgcccaaaaa catcaaatcg ggattaaaag atgcgcgtga gaaactgcac
      901 aacgtggaag ggctgtattt ccacaccttt accggcgaag acgttgtccg gcatcctctg
      961 gtgcaaaaaa tcgtcgaagc ctacgaatcg gcagaacacg actgacattc caatgccgtc
     1021 tgaaacccga tgcatggaaa tcgggcagag aaaaacggat acggaaacca agctccgtat
     1081 ccgtttcttt atccgtccaa ccgatacatc aatcgaattt tctgcatcgg attgcctcat
     1141 cttcgcaaaa cattgccgaa gtttcgcggt tgcacgcctg acgcactttc tgccgcgcca
     1201 cgccttcatt ccgatcgctt gcctcaaacg tcttctgaaa aggcgtaacg ctgcatacat
     1261 acatggtgga atttgaaccg aaaaggtcga ttttgacggt attgctgccg ctttccaata
     1321 cggcgacacg gtgttccaac tgcgccagac gtgcttccaa atcgccgatt ctgtcggcaa
     1381 atgcaggcat ggcggcacac gcggtcaaaa tgcccaaaat acattttttc atcaattttt
     1441 ccttgtttct tgaaccctac ccacccggac atcctttttc cgagaggcag ggtcagactt
     1501 tatttacggg gatgaatccc cttacaaatc aggataatac atagaacggc actttatgct
     1561 tcatcccatg tgttgaaact tcattgctcc ttgtctgttg acccttattc ccaatccgtt
     1621 ccctcaacct tcggcttggg tttgcgcctg cgacggcggc gttttttcgc ctgtccttcg
     1681 tttttttcgt gccgggcagc agcctcgttt ttggtcattt ccgtccgttg ttcctgcgat
     1741 gccgtctgaa acgccgtcca ccactcggca agggcgcggt ccgcattgcc ggtttcggcg
     1801 cgcaagagca ggaaatcata ggcggcacgg aaacgcgcct gtgcaaacag tttatgcgga
     1861 cgtgcgcctt tgcggttctc aaactgcggc tgaaacatcc aaatttcgcg catcgtggcg
     1921 gaaaagcgtt gcggcacgcc ccaaccgcgt tcgacggttt cacgcatcgt attgattgca
     1981 tcggacaggg cgggcgcagg tttcaaaccc tgttgcagat tgcttttcca atggcgttcc
     2041 aactcgggcc acatcagagc cgccagtaca aaaccgaccg aaaccgattt gtcagcacgc
     2101 agccgctcat cggtattttt cagggcaagc accgtcattt ttccggcgat gccgtctgaa
     2161 acgcgcaagg cattgagcag cggatggatg tcgtccggta tgtcaaatcc gttcaaacgt
     2221 ttcagacact cgcgcgcgtg ccctgaaaac agcagtttca tgatttcgtc aaacagcctc
     2281 gctaccggtt cgtgcttcag acggcatatc gattcggcaa tcggtgcggt ggtttcttcc
     2341 gacagctcaa agcccaattt gcccgacagg cggatggcgc gcaaaatcct gacagggtct
     2401 tcctgatagc gttcggcggc atcgccaatc ataaccagcc tgcgggcggc aacatcggca
     2461 atcccgttgt ggaaatccaa aatctcttct ttttcaggat cgtaatacaa ggcattgcag
     2521 gtaaaatcgc gccgcatcgc atcttcttcg atgctgccgt aggtgttgtc tttcatgatt
     2581 ctgccgtgcg cgttctgatg aaccttcgca ccgccgcgaa acgtcgttac ttcgataatc
     2641 tccgcaccgt tcatcacatg gacgatttga aaacgcctgc cgatgatgcg gctgcggcgg
     2701 aagagtttgt gcacctgttc gggcgtggca tcggttgcga catcgaaatc tttgggttcg
     2761 atgccgagca gcagatccct gaccgcgccg ccgaccacat aagcctgaaa ccccgcccct
     2821 ttcagacggc gtatgacgtt ttcggcggca aagctcaaca tttcggcacg gatgttgtgt
     2881 ctttcggcag gaatgaccgt tttactttcc gcttttttac tgctccgacc ggaaggcagc
     2941 atcttattca accatttttt cagcataaat attctaaccc gaagagcggc atctccacgg
     3001 gcaaccgtgt tcagacggca tcaggcggta cgattccgca agatgccgta accataaaca
     3061 aaaggcgtag aaactacgcc gtccgaatca cgccgccctc gcggcggcgg caacgcgcca
     3121 ttataacaga ttgcccttta aaaaaatcag accctgcttt tgtggcggag tctgaaattt
     3181 gatgcacctt atatattgcg tccctaagaa gggatgatta acaaaaatta acgcccttta
     3241 ctttcttttc cgattgggaa cattcccgtc gtacaaacag gcaaatgaag gaacagaaat
     3301 cacattcaaa cggcgttccg ccgcctctac accgcttccc agtaatcgat atacagctgc
     3361 aattcgagat tgttgcgcca ttcgttggca acggggcggt aaaccgtgcg gatgtattcg
     3421 gggatgtctt cgctgcaacg ccaaaacatc gcttcaaatt cgcagccgtc tttttgcagc
     3481 cagacttttt tgtgtttgcc ctccgcgccc aaaggttgct ggcggacgac gtggaactcg
     3541 tcggtaaagc tcggcggcgc gaagccctgc ccccaaacgt gacgggcaag gttttgcgcc
     3601 tgttccaacg tgatgtcgca ggcgggcagg ctgccgtcgg tgatgaaggt ttgcgacaaa
     3661 tcgtcttcgc acaccatttc gcgcacggct tcttcaaagg tcgtctgaaa cgcgggaatg
     3721 ttgtgttcaa gtatgctcaa acccgccgcc atcgcgtgtc cgccgaattt taaaatcaaa
     3781 tcgggatggc gtttggacac caagtccaaa gcatcgcgca ggtgcaggtt gggaatggaa
     3841 cgccccgaac cgcgcacttc gccgttgtcg gcaggcgcaa acacgatggt cggacgataa
     3901 aaacggtctt tgaggcggct ggcgacgata ccgaccacgc cttgatggaa gtcgtcgcga
     3961 tacgccacca aagtcgtctg acctgaaggc agggtttcag gaaaggcgtt cagcgcgtct
     4021 tgcagcatag actgctcgat ttcgcgacgc tcgatattga ggttgtttaa ctgagccgcc
     4081 agttcctgag cttcggaatc atctcgcgcc aacaggcagg cgatgccgac cgacatatcg
     4141 tccagccgtc cggcggcatt gatgcgcggg cccaacgcaa aacccatatc aaacggctgc
     4201 gccttgcgcc agtcgcgccg cgccacttca aacaaggcgc ggatgccggg gcgcattttg
     4261 cccgaacgca tccgtttcaa accttgcgac acgaggatgc ggttgttgtg gtcgagaggg
     4321 acgacatcgg caaccgtgcc gagtgcgacc aaatccaaaa gatcgcccag attcggctct
     4381 ttcaggccgt ctgaaaaata attgcggcgg cgcagttcgg cacgcaacgc cgtcaacaca
     4441 taaaaaatca cgcccacgcc cgccaagctt ttgctttgga aaccgcagcc tttttggttc
     4501 ggattgacga tgatgcagtc gggcacggta tcggcaggca gatggtggtc ggttacaatc
     4561 acatccaaac ccagagcctg cgccctcgcc acgcctgcga tgctggcgat accgttatcc
     4621 accgtaatca gcaaatccac gccctgcgcg gcagcgattt cggcaagttc gggcgttaag
     4681 ccgtagccgt gttcaaagcg gttgggcaca aggaaatcca cttttgcccc catcgccgcc
     4741 aaaccgtcca aaccgacggc acacgccgtc gcgccgtcgg catcgtagtc ggcgacaatc
     4801 aggatttttt ccttgcgccc aaccgcatcc gccaaacgtc cggcggcggc ttcgcagttt
     4861 gtcagcgttt gatacggcaa aagcgcagca agcttgtcgt ccaattcggc aggactttgc
     4921 acaccgcgcg aagcacaaag ccgggcgatt aaaggatcgg caccggcggt gagcaaatga
     4981 ttaaaaacgt cggtattgat ggatcgggtt tggattttga ctgacataac gtggggtttt
     5041 actgtgcgtg tgtgcttaaa atgccgtctg aaagcttttc agacggcatt gctgttcatt
     5101 tgcgggcggc atccacgacc gcacccagag ccgccgcagg caaagccagt accgcgcccg
     5161 ccgcatccag tatcaaaaag gggggggcgt atataagata tttgcaaaca gcttggattt
     5221 gtcggtatgt ttttcagtaa ccgtgtaata aatatcggca ggcacacttt gctcaaaatg
     5281 ataatcggcg ttcagttttt gcggcgtggc gtagtatttg cctttggcag agacgcagcg
     5341 cgtgtaaata gtctgtttgt cgagttcgac cgcttcaaac tcaagctgtt tcagcttggc
     5401 gatgtcgtca ggcctgtcgg tatcgtagcg caggcaaagg ccgtcggtac tgaaattctg
     5461 gctgccgggc gattcgagtt tgaccggcag ggcttggtgg cgggcatagc tcggggtatc
     5521 ctcaactatt tggaagggct tgtccagccc ggccttcaaa atgcccgtca gcttcgccga
     5581 atcttcagga ttgacgacga accagtattt tccgcccatc atcaccaggc tgcccttttc
     5641 caattgggca ttgtcttcgg caaccacacc gaaggcgcgg atttggtctt tgtcaacgtg
     5701 tttgcgggtg attgtttcgc tgaccgggtt gttcattccc cacaacatca acgtacagcc
     5761 gttcagcatc aaggttgccg ccaaaacggc ggcggtcgtt ttacggaaca acattttatc
     5821 ctccaatcta aataacggcg gatgtcgtct gaaaatatgc ctaaatttcc gcgtccccgt
     5881 tttccatcac ggttttcaac tcttgaaaca gggcgcggaa attttttggt ggtttgtttt
     5941 gctcctgctc ttttttggta ttgcggatga gtgtcctcag cttgcccgcg tccgcatgcg
     6001 gaaaatccga cataaactgc gtcaacgcgc cgtcgtctgc cagcagctcc atccgcgtcc
     6061 gctccacacg ttgcaaaaag gcgttgtgcg ccgcatcgtc gccgcgcagc ttggcaagaa
     6121 atgcctcgat gggcgcggga tcggtatcgc gcatcagtct gccgataaat tgcgcctgcc
     6181 gcttgagcgc gccgttggat gtgatttttt tataggtaac gacggcttcg tacaaatctt
     6241 cgtccaagcc gatttttttc aacgtgtcgc ttgagagctt ggtcagctcc atacccaaat
     6301 cctgcaaacc gttcatctgc tttttcattt gggttttgct gacccattcg tcttcttgtt
     6361 caaacatctt cattctcaaa ttttatccga cgggcgcatt ttaacagaat gattccgcgt
     6421 tcagacggca ttttgcaccg tccgccctgc aaacggcacg cttttgcccc tgccgcccga
     6481 aacggttaaa atgccgcaac gctccaccaa gaaagatttc tatgctgttc aaccacaccg
     6541 cttccgaact tctcgacctc tgccgccgca cgctcgactt ggcaaaagca gcgggcgcga
     6601 ccgccgccga agccgatttc agcgaatcca tcggacaaag cgtcagcgtg cggctgggcg
     6661 aaatcgaaca aatcgagttc cagcaggaca agtcgctgga cattaccgtt tacgtcggca
     6721 aacgcaaagg ccgcgctggc accgccgatt tctccgaaca agccctgcgc gacaccgtcc
     6781 gcgccgccgc cgacatcgcc cgccacaccg ccgaagacgg ttgcgccgga cttgccgacc
     6841 ccgagttgat ggcgcaacac atcggcgacc ccgaccttta ccacgaatgg gatttggata
     6901 cggaagccgc cgtcggcttt gcaaaacaat gcgaacaagc cgccctgaac gaggatgagc
     6961 gcatcgaaaa ctccgaaggc gcggcggtgc aaaccggcca ttaccaatac gtttacggca
     7021 acacccacgg ttttgccgca caccggcaag gcacgcacca cagcatttcc tgcagcgtcg
     7081 ttgccgccga cgaaaacggg atgcagcgcg actactggta cgattccgcc tgccgccatc
     7141 cggatatgga cagccccgaa accatcggtc aaaccgccgc ccgccgcact ttgcgccgac
     7201 tcggcagccg cagcatcccg acaggcagct accccgtcct cttcgatacc accgtttcgg
     7261 gcggccttat cggacacctc gtcggcgcac tctccggcgg cgcgctctac cgccaaagca
     7321 gtttcctgat cgacagcatc ggcaaaaaag tcctgcccga tttcctcaac ctgcgcgaag
     7381 aaccgcacat cccccgctct ttccgcagca gctattttga tgcggaaggc gttgccaccg
     7441 caccgcgctt cgtgattcaa aacggcattg tcgaaggcta tttcctcagc agttacagcg
     7501 cgcgcaaact cggtatgcag accacgggca acgccggcgg cgcgcacaac ctgtatttga
     7561 accatacgca cgaaacgcaa tccgacctgc tgaaagaaat ggggacggga ttattggtta
     7621 ccgaactgat gggacagggc gcgaacacca ttaccggtga ctactcgcgc ggcgcggcgg
     7681 gtttttgggt ggaaaacggc gtgattgcct accccgtcca cgagattacc gtagccggac
     7741 gcttgcagga tatgtaccgc gacattgtcg gcgtggcgga tgacgctttg cggcgttcgt
     7801 ccaacaaaat cggctcgatt ctgattgcgg ggatgacggt tgccggaagc tgaacgccct
     7861 gccgatgccg tctgaagacg aaggcagcac gttttgcccc gtgcctgccc gtttgccgtt
     7921 ttatgccgca ccgccttttg ccgacaacat tgcacatttt ttcatcagca ctgattttcc
     7981 cttatccgtc aaaatactaa gccacttgtc cacaacaggg tacacacaag ttcaggataa
     8041 ggcgtgcggg gattggggtt tttccgccgc cggcaaaacg gcagacaaaa acggcgggac
     8101 attgcctgtc ccgccgtttt caaatataca tttgaccgta catcaggaat taagcagcct
     8161 gaatgttggc ggcctgtttg cctttagggc cggtggttac gtcgaaagag acgcgttggc
     8221 cttctttcag ggttttgaaa ccttccatat tgattgctga gaagtgagcg aacaaatctt
     8281 cgccgccttc atcaggcgtg atgaaaccaa aacctttagc gtcgttaaac cattttacga
     8341 taccggttgc cattagaaac ttcctatact caaaaattaa caaaatcagc aaaacaaggc
     8401 atacggcaaa ccgagccgtc tggcgttcct tccagcttga tatactcggc ggatgcccaa
     8461 tcctgcttaa ccgtcttttt acatttgtta agacaaaacg tcaagctatg ttttcaaaaa
     8521 agtgggaaaa taggcaaaag taccgaaaat acaacaaaaa tgccgtctga acgcggcttt
     8581 caaatgggac acactatgac cgcgcaacac caatccgaca cgctcttgca ccgtctgaac
     8641 accctgccgc cgaaacgtta cggcgttttc ctattgaacg acgattacac cacgatggaa
     8701 tttgtcgtcg aaatcctgac cgaaatcttt atgctcggac aagaacaggc ggtagcggta
     8761 atgctcttgg ttcatcacga aggcaaaggc ctgtgcggca cttacacgcg cgatattgcc
     8821 caaaccaaac aacaacaagt catgcagcgg gcaaaagccg aagggcatcc gctgcaatgt
     8881 attgtcgagg agatttaata tgcttgcacc cgaattggaa cagattttgc agcagcttta
     8941 ccgcgaggcg cgtaaggctc attatgaatt tatcagcctc gagcatctgc ttttggtact
     9001 catcgaagaa gatgcctccg tgccgaacgt cttaaaacta tgcggcgcgg atttgaaagt
     9061 ggtgtccgaa cagctcgccg ccagcgttgc cgaaaacacc cccctgattc ccgaacacct
     9121 tttagacacg gtcgaaacac ggcccacgct cggcttccaa cgcgtgatgc aacgggcgat
     9181 ggtgcatacc cagtctgccg gaaaagccgc agtcgaaccg ttggacgttt tggtcgcgct
     9241 gatgagcgaa accgacagcc acaccgtcta tttcctcaag ctgcaatcgg ttacgcgttt
     9301 tgaagttttg cgctgtattg cccacggctc tcccgatgaa gatgaagatg aagacgatgg
     9361 caactattct tcagacggca tggacgacga taatgaaaac cgcgccaaac cgggcaaaaa
     9421 ccctttatcg gcgtacaccg tcaacctcaa cgccgaagtc aaagccggcc gtatcgaccc
     9481 tttgattggt cgcaaacacg aaatggaacg gctggtgcaa atcctatgcc gccgccgcaa
     9541 aaacaatccg cttttggtcg gcgaagcggg cgtgggcaaa accgcgctgg cggaaggttt
     9601 ggcacatcaa atcgtcaacg gcggcattcc agacgcgctc aaagatgccg aagtgtacgc
     9661 gctggatatg ggctcgctgt tggcgggcac gaaataccgc ggcgactttg aagcgcgggt
     9721 caaatccgtc ttgaaacagc tcgaaaaaat cccgcacgcc attttgttta tcgacgaaat
     9781 ccacaccatc atcggcgcgg gcagcaccag cggcggcacc atggacgcgt ccaacctgct
     9841 caaacccgcg ctggcaaaag gttcgctgcg ctgcatcggc gcgaccacct acgacgaata
     9901 ccgcaccatt ttcgacaaag accatgcctt aagccgccgc ttccaaaaaa tcgacgtggt
     9961 cgaacccacc gtttccgaaa ccgttcaaat cctgcgcggc ttgaaaccga tgtttgaagc
    10021 cttccaccaa gtccgctaca ctcaaggcgc actcgaagcc gccgccgaac tctccgcacg
    10081 ctacatcaac gagcgtttcc tgcccgacaa agccatcgac gtaatggatg aagcaggcgc
    10141 ggcgcaacgg attctgccca aatccaaaca gaaaaaagtc atcggcaaag cacaaatcga
    10201 aaccgtcatc gccaaagttt cgcggattcc cgaaaaaacc gtgtcgcacg acgacaaaca
    10261 agtgctgcaa ttcctcggtc gcgatttgaa aaacatggtt tacggtcaag aaaacgccat
    10321 cgacgcgctg gttgccgccg tcaaaatgtc gcgttccggc cttgccctgc ccgacaaacc
    10381 gataggcagc ttcctcttct ccggcccgac cggcgtgggc aaaaccgaag ccgccaaaca
    10441 gcttgcctac tcgctgggcg taccgctgca acgctttgat atgtccgaat acatggaacg
    10501 ccatgccgta tcgcgcctca tcggcgcgcc accgggctac gtcggctttg aacaaggcgg
    10561 ccttttgacc gaagccgtca acaaacagcc gcattgcgta ttgctcttgg acgaaatcga
    10621 aaaagcccac cccgacattt tcaacgtcct cctgcaagtc atggacgcag gcaaactgac
    10681 cgacaacaac ggcaagagtg ccgatttccg caacgtcatc ctgattatga ccaccaacgc
    10741 aggcgcggaa agcctcagcc gccccagcct cggctttacc gccaagcgcg aacgcggcga
    10801 cgaaatgcag gcaatcaaca agctcttcac gcccgagttc cgcaaccgct tggacgcgat
    10861 tatcccgttt gcacccttgt ccgaacccat catcgtcaaa gtcgtggaca aattcctgct
    10921 ccagctcgaa caccagctcc tcgacaaaaa agtcgaagcc gaattcacgt cggcattgca
    10981 caaatatctg gcggaaaaag gtttcgaccc gcaaatgggc gcgcgcccga tgcaccgcct
    11041 gattcaggaa aaaatccgca aaccgctcgc cgacgaactc ctgttcggca aactatccga
    11101 cggcggcttc gtgcggatag actgggatgc ggcaaaagaa gaagccgtgt tgaagtttaa
    11161 gaaaagcaag gtcaaaataa aaaccgcctc cgcgtaaaat caaaaatgcc gtctgaaatt
    11221 tcagacggca ttttctttca aacaaaatta ccaatcgtgt ttaagccaaa ttttccagca
    11281 tccatttgac gtagcggtcg acgcctgatt tgacatcgaa aaattcttcc ttatatccgg
    11341 cttcgcgcaa tttggtgatg tcggcttggg tgaagctctg gtatttgcct ttgagtgcgt
    11401 cggggaaggg gatgtagcgg ataagttctt cttccaccag ctctttcaag ctcatttcag
    11461 gcttgccttc ggcggcgcgg caggcgttga cggtggcggc ggcgagttcg ttaaactgtt
    11521 ggctgcggcc ggtaccgagg ttgtagatgc cggaaagttc gggatggtcg aagaagtaga
    11581 ggttgacttt ggcaacgtct tcgacgctga caaagtcgcg ggtttgttcg ccgttgccgt
    11641 aaccgtcatt gctgccgaac aggttgacgt aaccgtgttc gcggtattgg tggaaatggt
    11701 ggaaggtgac ggatgccatg cggcctttgt gttgttcgtg ttgtccgtaa acgttgaagt
    11761 agcggaagcc gacgacttgg gcggtgagac cttctttcat gcggcggcgc aatacttggt
    11821 cgaacaggaa tttggagtag ccgtacacat taagcggttt ttcgagttcg cgctcttcgc
    11881 ggaagatttc gcctttgccg taaaccgccg cactggaggc ataaaggaag ggaatgcgtt
    11941 cgtcctgaca ccagttcaac aaatccagcg tgtactggta gttgttttcc atcatataca
    12001 aaccgtcgtg gttcatcgta tcggaacacg cgccttgatg gaaaacggct tcgatgtttt
    12061 gataaggtaa aatgtgttcc ctcacttggc ggatgaattc gtgtttgtcg agataatggg
    12121 cgatttcgca ctcggcaagg tttttgaatt tttcgccttt gctcaaatta tcgacggcga
    12181 cgatgtcggt aataccgcgt tgattaagtg ctttgacgat gttgctgccg ataaagccgg
    12241 ccgcgcctgt tacgatgatg gtcatattcg gtttcctttg ttttgagtaa aattaataaa
    12301 cttagttaca agaaatcatc gatattgtcc tgaaacacaa atttgcgatg atattccaaa
    12361 tatttttctc ttccttcggg atatattctc atcttatttt ttgcatttgg attgatatta
    12421 agtttttccc atgtgtaacg gcttagtcga gtaccgcaaa tcaaacgacc atcatccaag
    12481 aaagtaatat aaccttgatc gaacaaccaa tcataagtcg gcgttaaagc taacccattt
    12541 aaataatcta atgcctcttt ctcatttttc tcagtaatac aaaccatata aggtttaata
    12601 tgactagccc ttaacaaaac ctcatctgta attaatgtaa atggacattg cggcatatga
    12661 tttataacat ccttgcgata tttctgctgc ccttttctac ttttctgttt aatgatttct
    12721 tgctctacga attgattaaa ttctgaagcc ggtatttcta atttttctct tgataagagt
    12781 tgcgggtgca cgatagagcg aaattgataa tccaaaaata ttcggaaata aaataatggt
    12841 tctgaatctt ctatatcttt gacaggcaat agtttaagaa ttgataaata actaattttg
    12901 ggcaatacaa tcttacg
//
LOCUS       DAXIFD010000044        12841 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.044, whole genome shotgun sequence.
ACCESSION   DAXIFD010000044 DAXIFD010000000
VERSION     DAXIFD010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12841
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.044"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(16..1326)
                     /locus_tag="ACFOCN_000878"
     CDS             complement(16..1326)
                     /locus_tag="ACFOCN_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HFC6970052.1"
                     /translation="MDTSKQTLLDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNP
                     LILGETGMDMGAVFVATCIASAIGCFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGV
                     PWQVALGAVFISGLIFILFSFFKVREMLVNALPMGLKMSIAAGIGLFLALISLKGAGI
                     IVANPATLVGLGDIHQPSALLALFGFAMVVVLGHFRVQGAIIITILTITVIASLMGLN
                     EFHGIIGEVPSIAPTFMQMDFEGLFTVSMVSVIFVFFLVDLFDSTGTLVGISHRAGLL
                     VDGKLPRLKRALLADSTAIVAGAALGTSSTTPYVESAAGVSAGGRTGLTAVTVGVLML
                     ACLMFSPLAKSVPAFATAPALLYVGTQMLRSARDIDWDDMTEAAPAFLTIVFMPFTYS
                     IADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAVLWALKFWYLG"
     gene            complement(1465..2643)
                     /gene="ftsZ"
                     /locus_tag="ACFOCN_000879"
     CDS             complement(1465..2643)
                     /gene="ftsZ"
                     /locus_tag="ACFOCN_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HFC6970053.1"
                     /translation="MEFVYDVAESAVSPAVIKVIGLGGGGCNAINNMVANNVRGVEFI
                     SANTDAQSLAKNHAAKRIQLGTNLTRGLGAGANPDIGRAAAQEDREAIEEAIRGANML
                     FITTGMGGGTGTGSAPVVAEIAKSLGILTVAVVTRPFAYEGKRVHVAQAGLEQLKEHV
                     DSLIIIPNDKLMTALGEDVTMREAFRAADNVLRDAVAGISEVVTCPSEIINLDFADVK
                     TVMSNRGIAMMGSGYAQGIDRARMATDQAISSPLLDDVTLDGARGVLVNITTAPGCLK
                     MSELSEVMKIVNQSAHPDLECKFGAAEDETMSEDAIRITIIATGLKEKGAVDFVPARE
                     VEAVAPSKQEQSHNVEGMIRTNRGIRTMNLTAADFDNQSVLDDFEIPAILRRQHNSDK
                     "
     gene            complement(2762..4006)
                     /gene="ftsA"
                     /locus_tag="ACFOCN_000880"
     CDS             complement(2762..4006)
                     /gene="ftsA"
                     /locus_tag="ACFOCN_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HFC6970054.1"
                     /translation="MEQQQRYISVLDIGTSKVLALIGEVQDDDKINIVGLGQAPSRGL
                     RAGMVTNIDATVQAIRQAVNDAELMADTKITHVTTGIAGNHIRSLNSQGVVKIKDGEV
                     TQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVREPIGMSGVRLDTRVHIIT
                     GASTAVQNVQKCIERCGLKSDQIMLQPLASGQAVLTEDEKDLGVCVIDIGGGTTDIAV
                     YMNGAIRHTSVIPAGGNLITKDLSKSLRTPLDAAEYIKIHYGVASCDTEGLGEMIEVP
                     GVGDRTSRQVSSKVLAAIISARIQEIFGVVLGELQKSGFPKEVLNAGIVLTGGVSMMT
                     GIVEFAEKIFDLPVRTGAPQEMGGLSDRVRTPRFSTAIGLLHAACKLEGNLPQPENGA
                     VQEREGGGGLLARLKRWIENSF"
     gene            complement(4092..4820)
                     /locus_tag="ACFOCN_000881"
     CDS             complement(4092..4820)
                     /locus_tag="ACFOCN_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HFC6970055.1"
                     /translation="MWDNAEAMERLTRWLLVMMAMLLAASGLVWFYNSNHLPVKQVSL
                     KGNLVYSDKKALGSLAKEYIHGNILRTDINGAQEAYRRYPWIASVMVRRRFPDTVEVV
                     LTERKPVARWGDHALVDGEGNVFEARLDRPGMPVFRGAEGTSAEMLRRYDEFSTVLAK
                     QGLGIKEMTYTARSAWIVVLDNGITVRLGRENEMKRLRLFTEAWQHLLRKNKNRLSYV
                     DMRYKDGFSVRYASDGLPEKESEE"
     gene            complement(4810..5724)
                     /locus_tag="ACFOCN_000882"
     CDS             complement(4810..5724)
                     /locus_tag="ACFOCN_000882"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HFC6970056.1"
                     /translation="MQNFGKVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDP
                     KETPLSELKAQGFQTAFNILHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRC
                     KLIWQALGLPVPEFAVLHDDTDFDAVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS
                     VYEELKHLQGEIIAERFIGGGEYSCPVLNGKGLPGIHIIPATEFYDYEAKYNRNDTIY
                     QCPSEDLTEAEESLMRELAVRGAQAIGAESCVRVDFLKDTDGKLYLLEINTLPGMTSH
                     SLVPKSAAVTGVGFADLCIEILKTAHVG"
     gene            complement(5837..7246)
                     /gene="murC"
                     /locus_tag="ACFOCN_000883"
     CDS             complement(5837..7246)
                     /gene="murC"
                     /locus_tag="ACFOCN_000883"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HFC6970057.1"
                     /translation="MMKNRVTNIHFVGIGGVGMSGIAEVLHNLGFKVSGSDQARNAAT
                     EHLGSLGIQVYPGHTAEHVNGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAEL
                     MRFRDGIAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLGKGEYIVA
                     EADESDASFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI
                     DSEHVRAILPKVSKPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVV
                     LNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL
                     LVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV
                     LTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM
                     GAGSINRVPAALLELSKQI"
     gene            complement(7400..8467)
                     /gene="murG"
                     /locus_tag="ACFOCN_000884"
     CDS             complement(7400..8467)
                     /gene="murG"
                     /locus_tag="ACFOCN_000884"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HFC6970058.1"
                     /translation="MGGKTFMLMAGGTGGHIFPALAVADSLRTRGHHVIWLGSKDSME
                     ERIVPQYGIRLETLAIKGVRGNGIKRKLMLPVTLYQTVREAQRIIRKHRVECVIGFGG
                     FVTFPGGLAAKLLGVPIVIHEQNAVAGLSNRHLSRWAKRVLYAFPKAFSHEGGLVGNP
                     VRADISNLPVPAERFQGREGRLKILVVGGSLGADVLNKTVPQALALLPDDARPQMYHQ
                     SGRGKLGSLQADYDALGVKAECVEFITDMVSAYRDADLVICRAGALTIAELTAAGLGA
                     LLVPYPHAVDDHQTANARFMVQAEAGLLLPQTQLTAEKLAEILGSLNREKCLKWAENA
                     RTLALPHSADDVAEAAIACAA"
     gene            complement(8471..9796)
                     /locus_tag="ACFOCN_000885"
     CDS             complement(8471..9796)
                     /locus_tag="ACFOCN_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HFC6970059.1"
                     /translation="MQTDWQVVFLKISEVLVKVGDGVHTLLLDRPIVRDGRKFDAPLL
                     WMVVLMTAFSLLMIYSASVYLASKEGGDQFFYLTRQAGFVVAGLIASGLLWFLCRMRT
                     WRRLVPWIFALSGLLLVVVLIAGREINGATRWIPLGPLNFQPTELFKLAVILYLASLF
                     TRREEVLRSMESLGWQSIWRGTANLIMSATNPQARRETLEMYGRFRAIILPIMLVAFG
                     LVLIMVQPDFGSFVVITVIAVGMLFLAGLPWKYFFVLVGSVLGGMVLMITAAPYRVQR
                     VVAFLDPWKDPQGAGYQLTHSLMAIGRGEWFGMGLGASLSKRGFLPEAHTDFIFAIIA
                     EEFGFFGMCVLIFCYGWLVVRAFSIGKQSRDLGLTFNAYIASGIGIWIGIQSFFNIGV
                     NIGALPTKGLTLPLMSYGGSSVFFMLISMMLLLRIDYENRRKMRGYRVE"
     gene            complement(9922..11259)
                     /gene="murD"
                     /locus_tag="ACFOCN_000886"
     CDS             complement(9922..11259)
                     /gene="murD"
                     /locus_tag="ACFOCN_000886"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HFC6970060.1"
                     /translation="MTLENKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVS
                     QIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA
                     DIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKK
                     ADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQV
                     LNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATKDIPLQGLHN
                     AANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGKKNGVVFIDDSKGTNVGAT
                     AAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLN
                     MTDCATLEEAVQTAYAQAEACDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL"
     gene            complement(11349..11621)
                     /locus_tag="ACFOCN_000887"
     CDS             complement(11349..11621)
                     /locus_tag="ACFOCN_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HFC6970061.1"
                     /translation="MKQTVKWLAAALIALGLNQAVWADDVSDFRENLQAAAQGNAAAQ
                     YNLGAMYYKGRGVRQDLVLAQEWFGKACQNGDQDGCDIYQRLKAGY"
     gene            complement(11736..12818)
                     /gene="mraY"
                     /locus_tag="ACFOCN_000888"
     CDS             complement(11736..12818)
                     /gene="mraY"
                     /locus_tag="ACFOCN_000888"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HFC6970062.1"
                     /translation="MFLWLAHFSNWLTGLNIFQYTTFRAVMAALTALAFSLMFGPWTI
                     RRLTALKCGQAVRTDGPQTHLVKNGTPTMGGSLILTAITVSTLLWGNWANPYIWILLG
                     VLLATGALGFYDDWRKVVYKDPNGVSAKFKMVWQSSVAIIASLALFYLAANSANNILI
                     VPFFKQIALPLGVVGFLVLSYLTIVGTSNAVNLTDGLDGLATFPVVLVAAGLAIFAYA
                     SGHSQFAQYLQLPYVAGANEVVIFCTAMCGACLGFLWFNAYPAQVFMGDVGALALGAA
                     LGTVAVIVRQEFVLVIMGGLFVVEAVSVMLQVGWYKKTKKRIFLMAPIHHHYEQKGWK
                     ETQVVVRFWIITIVLVLIGLSTLKIR"
BASE COUNT         3029 a         3677 c         3266 g         2869 t
ORIGIN      
        1 ttaatatcga atcaatcagc ccaaatacca gaatttcagt gcccacaata cggcaacaat
       61 ccataccata ggcggaacgt ctttggtgcg gcggcataaa agtttaacca cggcatagct
      121 gatgaagccg aaggcgatgc cgtctgcaat cgaataggta aacggcatga agacaatggt
      181 caggaatgcg ggtgcggctt ccgtcatatc gtcccaatca atatccctcg cactgcggag
      241 catctgcgtg ccgacataaa gcagggcggg cgcggtggca aaagcgggaa cacttttcgc
      301 caaaggtgaa aacatcaggc aggcgagcat caatacgccg actgtaaccg ccgtcaggcc
      361 ggtccgtccg cctgccgata cgcccgccgc gctttccaca taaggcgtgg tggaagaagt
      421 acccaaagcc gcacctgcca caatggcggt agagtctgca agcagtgcgc gtttcaggcg
      481 gggcagctta ccgtccacca gcagcccggc acggtgggat atgccgacca gcgttccggt
      541 actgtcaaat agatcgacca agaagaagac gaaaatcaca ctgaccatgc tgacggtaaa
      601 caggccttca aaatccatct gcataaaagt cggcgcaatg ctcggtactt cgccgatgat
      661 gccgtgaaat tcattcaaac ccatcaggct ggcaatgacg gtaatggtca agatggtgat
      721 gatgattgcg ccttgaacgc ggaaatgtcc caatacgacc accatagcaa aaccgaacag
      781 tgccaacaac gcggacggct gatgaatatc gcccaaaccg accaaggttg ccggattggc
      841 aacgataatg cctgcgcctt tcagggaaat cagtgccaaa aacaaaccga taccggcagc
      901 aatcgacatt ttcaaaccca taggcagtgc gttgaccagc atttccctga ctttaaaaaa
      961 gctgaacagg ataaaaatca gaccggagat gaacaccgca cccaacgcaa cctgccaagg
     1021 cacgcccata cccttaacga cggcaaaggt gaaataggca ttcagcccca tccccggtgc
     1081 gagtgcaatc ggatagttgc cgacaaaacc cataacaaaa cagccgatgg cagacgcgat
     1141 acaggtagcg acgaataccg cccccatatc catgccggtc tcgcccaaaa tcagagggtt
     1201 gacgataacg atgtagcaca tcgtcaaaaa agttgtcaaa cccgccatca actcggtacg
     1261 caccgtcgta ccgtttgcct tcagcttaaa aatcccgtcc aacagtgttt gttttgaagt
     1321 gtccatatct gaaagtctgt atcaagtgga aaaatctgaa tccgccgacc gcaaaccgta
     1381 cgaaattgca acatcttgaa aaacatacct cccaaaccgg acaaaccgat tcgggaggca
     1441 gcaggtttac gggcaaacag cacattattt gtctgaattg tgttgacgac gcaaaatcgc
     1501 agggatttca aagtcgtcaa gtacggactg attgtcgaaa tccgcagcgg taaggttcat
     1561 cgtgcggata ccgcgattgg tgcggatcat accttcgaca ttgtggcttt gctcctgttt
     1621 ggacggagca accgcttcta cctcccttgc cggaacaaaa tcgaccgcgc ctttttcttt
     1681 cagaccggta gcgataatgg taatccggat ggcatcttcg ctcatggtct cgtcttcagc
     1741 cgcaccgaat ttgcattcca aatcgggatg cgcgctttgg ttgacgattt tcatgacttc
     1801 ggacaactcg gacattttca agcaacccgg agcagtcgta atattgacca gcacaccgcg
     1861 cgctccgtcc aaggttacat cgtccagcag cggactggaa atggcctggt cggtcgccat
     1921 acgcgcacgg tcgatacctt gggcataacc cgaacccatc atagcgatac cgcggttgct
     1981 catcacggtt ttcacgtcgg caaagtcgag gttgatgatt tcgctcgggc aagttaccac
     2041 ttcggaaatg cctgcgaccg catcgcgcaa tacattgtcg gcggcacgga aggcttcgcg
     2101 catcgttacg tcttcaccca atgcagtcat cagtttgtcg ttcgggatga tgatcagcga
     2161 atcgacgtgt tctttcaact gttccaaccc tgcctgtgcg acatggacgc gcttaccttc
     2221 atatgcgaac ggtcgggtaa ccacggcaac ggtcagaatg cccaaagact tggcaatctc
     2281 agcaacaacc ggcgcggaac cggtaccggt accgccgccc ataccggtcg tgataaacag
     2341 catattcgca ccgcgaatgg cttcttcaat ggcttcccgg tcttcctggg ctgccgcacg
     2401 gccgatatcg ggattcgcgc ccgcgcccaa accgcgtgtc agattcgtac ccaactggat
     2461 tctcttcgcc gcatggtttt ttgccaaaga ctgcgcatcc gtattggcac tgataaactc
     2521 cacaccgcgc acattgttgg caaccatgtt attgattgca ttgcaaccgc cgccgcccaa
     2581 gccgattact ttaatcaccg cagggctgac tgccgattct gccacgtcgt aaacaaattc
     2641 cattcaaaaa ctcctgctcg ccccattcag aggacggttt aaataaatta ttattcatta
     2701 tataagaagt atcttgctgc tggcaaaata cttctcacct gtcaaacggc aatccacctg
     2761 ttcagaagct gttttcaatc caccgtttca atcttgccaa caaaccgccg cccccttccc
     2821 tctcttgcac tgcaccgttt tccggctgcg gcaagtttcc ttccagcttg catgctgcat
     2881 gaagcagccc gatggcggta gaaaagcgcg gtgtgcggac gcggtcggac aaaccgccca
     2941 tttcttgggg cgcaccggtg cgtacaggca aatcgaagat tttttcggca aattccacaa
     3001 tcccggtcat catggacaca ccgccggtca gaacgatacc cgcattcagc acttctttgg
     3061 ggaaacccga tttttgcagc tcgcccagca ctacgccaaa aatctcctga atacgtgcgc
     3121 tgatgattgc tgccaaaacc ttactggaaa cctgacgcga tgtccggtca cccacgcccg
     3181 gaacttcaat catctcaccc aagccttccg tatcgcatga tgccacgcca taatggattt
     3241 taatgtactc ggcggcatcg agaggtgttc tcaacgattt ggacaaatct ttggtaatca
     3301 gattaccacc ggccggaatg acggacgtat ggcggatggc accgttcata taaacggcaa
     3361 tatcggtcgt tccgccacca atgtcgatga cgcatacgcc gaggtctttt tcatcttcag
     3421 tcagcaccgc ctgcccgctt gccaacggct gaagcatgat ctgatcgctt ttcaaaccgc
     3481 accgctcgat acatttttgg acattctgca ctgccgtact tgcaccggta atgatgtgca
     3541 cccgcgtatc cagacgcaca ccgctcatac cgatgggctc cctcacgcca agttgggtgt
     3601 cgataatgta gtcttgaacc acggcatcga gaattttttg atcgggcggg atattgattg
     3661 cctttgccgt ttcaatggcg cggtcgatgt ctgcctgcgt gacttccccg tctttaattt
     3721 taaccacacc ttgcgaattg agactgcgga tgtggttgcc tgcgatacct gtggtaacgt
     3781 gggtaatttt ggtatccgcc atcagctcgg catcattgac cgcctgcctg atggcttgga
     3841 cggtggcatc gatattggtt accatgcccg cgcgcaagcc ccgtgaagga gcctgcccca
     3901 aaccgacgat gttgattttg tcgtcatctt gaacttcccc gatcagtgcg aggactttag
     3961 acgtaccgat atccagtacg ctgatgtatc tttgctgctg ttccattgtt cgtctgctct
     4021 taaaactgat tgaaatttgc gtcgcaccgt ttcagacggc acggtcgtaa tctgtccgat
     4081 acctgttccc actattcttc ggattctttt tcgggtaaac cgtcggaagc atagcggact
     4141 gaaaatccgt ccttatacct catatccaca taggataacc gatttttatt tttacgcaac
     4201 agatgctgcc acgcttcggt aaaaagccgg aggcgtttca tctcgttttc ccgtccgagc
     4261 ctgacggtga tgccgttgtc caaaacgaca atccacgccg aacgtgccgt ataggtcatc
     4321 tctttgatgc ccaaaccctg ttttgccaaa acagtcgaaa attcgtcata acggcggagc
     4381 atttcggcag acgttccttc cgcgcctctg aataccggca ttccgggtct gtccaagcgg
     4441 gcttcaaaaa cattgccttc gccgtccacc aaggcatggt cgccccaacg cgcgaccggc
     4501 ttgcgctcgg tcaggacgac ctcaaccgtg tcgggaaaac ggcggcgcac catgaccgac
     4561 gcaatccacg gataccggcg gtaggcctcc tgtgcgccat tgatgtccgt cctcaaaata
     4621 ttcccatgga tgtattcttt cgccaaactg cccaatgcct tcttatcgga ataaaccagg
     4681 ttgcccttca gcgacacctg cttgacgggc agatgattcg aattgtaaaa ccaaaccagc
     4741 ccggacgcag caagcagcat cgccatcatg acaagcagcc agcgcgtcag ccgttccatc
     4801 gcttcggcat tatcccacat gtgcggtctt caaaatttca atacataaat cggcaaaacc
     4861 cacgcccgta acggcagcgg atttcggtac taaactatgg ctcgtcatac cgggcagggt
     4921 gttgatttcc aacagataga gtttgccgtc ggtatctttg aggaaatcga cgcgcacgca
     4981 gctttccgca ccgattgcct gcgcgccgcg aaccgccagt tcgcgcatca ggctttcttc
     5041 ggcttcggtc agatcttccg aaggacattg ataaatggtg tcgttgcggt tgtacttggc
     5101 ttcgtagtca taaaactcgg tcgcggggat gatgtgtatg ccgggcaggc ctttgccgtt
     5161 caagacgggg caggaatatt cgccgccgcc gataaaccgt tcggcaatga tttcgccctg
     5221 aaggtgtttc aattcttcgt aaacgctttt cagacggcct tttcctttga cttttaccac
     5281 gcctacgctg ctgccttcgg ccgccggttt cacaaacatc ggcaggccca atttttcttc
     5341 gacggcatcg aaatcagtgt cgtcgtgcag gacggcgaac tcgggaacgg gcagtcccaa
     5401 tgcctgccaa atcagtttgc agcggtattt gtccatgccg atggcggatg cggcgacacc
     5461 gctgccggta tagggaatgc ccaacagttc caatgcaccc tgaaccgccc cgtcttcgcc
     5521 gtaagtaccg tgaaggatgt tgaatgccgt ctgaaaacct tgtgccttca attcagacaa
     5581 tggggtttct ttaggatcga aggcatatgc gtctatgcct ttgcttttta aagcattcaa
     5641 aatggcggtg ccgctgtcca gcgagatttc tcgttcgctg gaaaaaccgc ccatcaatac
     5701 ggccactttg ccaaaattct gcattgtttt tgttctttcc tgattgcttt atgcttgttg
     5761 ccagaggtcg tctgaaacct gatttgcggt ttcagacgac ctttatatga tgttccgtct
     5821 gtcaggcggg tgtgcctcaa atctgtttcg acaattccag cagcgcggcg gggacgcggt
     5881 tgatgcttcc cgcacccata ttcaacacga tgtcgccgtc ctgcaaaacg ttcaacagca
     5941 tttcgggcag atcggcaacg ttttcgcagt aaatcggctc gagtttgccc aacacgcgga
     6001 tggcgcgggc aagagcgcgg gaatcggcgg cggcaatcgg ctcttcaccg gcggcataaa
     6061 cttcggtcag caccagcgcg tcaacggtat tgaggacttt ggtaaagtct tcaaacaaat
     6121 cgcgcgtgcg ggtatagcgg tgcggctgga aggcgagtac caaacgtttt tccggatacg
     6181 cgccgcgtgc ggcggcaagg gtcgccgcca tttcgacggg gtggtgtccg tagtcgtcca
     6241 ccaagagcgc ggtcccgccg tttggcaact tgatgtcgcc gtatttttgg aagcggcggc
     6301 cgacaccttc aaagccgagc aagccttttt ggatcgcttc aaccgatgcg ccgacttcca
     6361 gcgccacgcc gatggctgcc aatgcgttca gcacgttgtg tctgccgggc atattcagca
     6421 cgacttcaaa cgacccctgc tcatgtcctt tcatttgaac atggacggtg aatttcattt
     6481 gcgcgccgac gttttcgatg tcggtggcgt agatgtcggc ggtatcgtcc aaaccgtaag
     6541 tagcataagg tttgctcact ttgggcaaaa tcgcgcggac gtgttcgctg tcaatacaca
     6601 aaaaggcttt gccgtagaag ggcatacggt ggatgaaatc gataaacgcc tgatgcagtt
     6661 tttcgacgct gtgcccgtag gtatccatat ggtcttcgtc gatattggta acgacggaca
     6721 taatcggtgt caggtgcaga aaggatgcat ccgactcgtc ggcttcggca acgatgtatt
     6781 cgcctttgcc caagcgggcg ttggtgcctg cggcgttgag tttgccgccg ataacgaaag
     6841 tcgggtcaag tcctgccgcg ccgaggatgg aggcggtcag gctggtggtc gtggttttgc
     6901 cgtgcgtgcc ggcaatggcg atgccgtcac ggaagcgcat caactccgcc aacatcaggg
     6961 cgcgcggaat aacgggaatt tgctgctcca acgcagcgac aacttcggga ttttcttttt
     7021 tgacggcggt agaggtaacg acgacatccg caccgttaac gtgttctgcg gtatggccgg
     7081 gataaacttg aatgcccagg ctgcccaaat gctcggtagc ggcatttcgc gcctgatccg
     7141 aaccggaaac tttaaaaccc aaattgtgca agacttcggc gataccgctc atgccgacgc
     7201 cgccgatacc gacaaaatgg atgttggtca ctcgattttt catcataatg ttgcgttccg
     7261 gtggatttcg atgcgtaaag gcgttatttt aaagggctga ccgtttgcgc gccatagttt
     7321 tctgacaaat atatagcgga ttgaaataaa aaacatccat gccgtctgaa cggcttttca
     7381 gacggcatgg ttcggcagtt tacgccgcac acgcaatcgc ggcttcggca acgtcgtccg
     7441 cgctgtgcgg caatgccaaa gtacgggcgt tttctgccca tttgagacat ttttcgcggt
     7501 tcaggctgcc gaggatttcg gcgagttttt ccgccgtcaa ctgggtttgc ggcaacagca
     7561 gtcctgcttc tgcctgcacc ataaaacgcg cgttggcggt ttggtgatcg tcaaccgcgt
     7621 gggggtacgg aacgagcaac gcacccaatc ccgccgccgt caactcggca atcgtcagcg
     7681 cgccggcacg gcaaatcacc aaatcggcat cgcggtaggc ggacaccatg tcggtaataa
     7741 attccacgca ttcggctttc acgcccagcg cgtcgtaatc cgcctgcaag ctgcccagct
     7801 tgccccgtcc cgattggtgg tacatctgcg gacgcgcatc gtcgggcagc aaagccaatg
     7861 cctgcggtac ggttttgttc aaaacgtccg cgcccaaact gccgccgacc accaaaattt
     7921 tcagacggcc ttcacgccct tggaagcgtt cggcaggcac gggcaggttg ctaatatcgg
     7981 cgcggacggg gttgccgacc aagccgcctt cgtggctgaa cgctttcgga aaagcgtaca
     8041 acacccgctt cgcccagcgc gacaggtggc ggttggacaa gcctgccacg gcgttttgct
     8101 cgtgaatcac aatcggcacg cccaagagtt tcgctgccag accgccggga aaggtaacga
     8161 agccgccgaa gccgatgacg cactcgacac ggtgtttgcg gataatccgc tgcgcttcgc
     8221 ggacggtttg atacaaagta accggcagca tcagtttgcg tttgatgccg ttgccgcgca
     8281 cgcctttaat cgccagcgtt tccaagcgta tgccgtattg cggcacgata cgctcttcca
     8341 tcgaatcctt gctgcccagc caaatcacat gatggccgcg cgtgcgcaat gaatccgcca
     8401 ccgccagcgc ggggaaaata tgtccgcccg ttccgcccgc catcagcata aaggttttac
     8461 cgcccatgat ttactccacc cgataaccgc gcattttccg gcggttttca taatctatac
     8521 gcaacagcag catcatgctg atcagcatga aaaagactga cgaaccgcca taggacatca
     8581 acggcagcgt cagacctttg gtcggcaaag caccgatgtt cacaccgata ttgaagaaac
     8641 tttggatacc gatccaaatg ccgatacccg aagcgatata ggcgttgaaa gtcaaaccca
     8701 aatcgcgcga ctgcttgccg atggaaaacg cccgcaccac cagccagccg taacagaata
     8761 tcagcacgca cataccgaag aaaccgaatt cttcggcgat gatggcaaaa ataaaatcgg
     8821 tatgcgcttc cggcagaaag ccgcgtttgc tcaaactcgc acccaaaccc ataccgaacc
     8881 actctccgcg cccgattgcc atcagagagt gggtaagctg gtagccggca ccctgcgggt
     8941 ctttccacgg gtccaaaaat gccactaccc gctgcacacg gtagggagcg gcggtaatca
     9001 tcagcaccat cccgcccaag acgctgccta ccaggacgaa aaaatatttc cacggcaatc
     9061 ctgccaaaaa cagcattcca acggcaatga cggtaatgac gacaaacgaa ccgaaatccg
     9121 gctgtaccat tatcagcacc aaaccgaacg ccaccagcat aatcggcagg atgatcgccc
     9181 ggaaacggcc gtacatttct aatgtttcac gacgtgcctg cggattggtg gcggacatga
     9241 tcagattggc cgtcccccgc caaatcgact gccaacccaa actttccatg ctgcgcaaca
     9301 cttcttcacg gcgcgtgaac aggcttgcca aataaaggat gaccgccagc ttgaacagct
     9361 cggtcggctg gaaattcaac ggacccaaag gtatccaacg ggtcgcgcca ttgatttcgc
     9421 gcccggcaat caatacgact accagcaaca ggccggatag ggcaaaaatc cacggcacaa
     9481 gccgccgcca tgtcctcatc ctgcaaagaa accataacaa accgctcgct atcaagccgg
     9541 caacgacgaa ccccgcctgt ctggtcaaat agaaaaactg atcgccgcct tcttttgatg
     9601 ccaaatacac agaagccgaa taaatcatca gcaggctgaa cgccgtcatc agcaccacca
     9661 tccacaaaag cggcgcgtcg aatttcctgc cgtcgcgcac aatcggcctg tcgagcagca
     9721 gagtgtggac accgtcgccc acttttacca atacttccga aatcttcaaa aaaaccacct
     9781 gccagtctgt ttgcacctgc cgcaaagggc aaaaatttca gacggcagac aatgccgtcc
     9841 gaacatacga tacatcccaa atcggtattc taaatcttta cttgccgccc aacaatgacg
     9901 gcgtttgcat ttcagacggc atcacaaagc cttaaacgct tcgataaaca cttccgaacg
     9961 gtgcgcgtag cctttaaaca tatcaaaact cgcacaagcc gggctgagca gcacgatatc
    10021 gcacgcttcg gcttgggcat atgccgtctg aacggcttct tccaaagtgg cgcagtcggt
    10081 catattcaga ccgcagccgt ccaaatcgcg gcggatttgc ggcgcatcaa cgccgatcag
    10141 gaacacgcct tttgccttgc cggcaagcgc gtcgcgcaga ggcgtgaagt cctgcccttt
    10201 gcccatgccg cctaaaatca cgaagagcgg attttgcaaa ccggcaatcg cggcggcggt
    10261 cgcgccgaca ttcgtgcctt tgctgtcatc aatgaatacc acgccgtttt tcttgccgat
    10321 tttttccacg cggtgcggca ggccttggaa ggttttgacg tgttcaagca atgcttcgcg
    10381 cggcaaaccg acggcttcgc acaaagccac ggcagccatg acgttggcgg cgttgtgcaa
    10441 gccttgcaac ggaatgtctt tcgtggcaat caaatcttca ttgccttgtt tcaggcggcc
    10501 tgtctcacgt tccaaccaaa aatcggcttc gtgttccaac gaaaaccatt ttacctcgcg
    10561 cccggcacgt ttcatggcac ggcagaacgc atcgtccgca ttcaaaacct gcacaccgtc
    10621 gccacggaaa atcttggctt tggtatgcgc gtagtcgagc aagtcgtcgt agcggtcgag
    10681 atggtcttcg gaaatattca gtaccgtcgc cgccgtcggg cgcaggcttt cggtgttttc
    10741 cagttggaag ctggaaagct ccaacaccca cacgtccgcc tttttgcctt cgcgctgcca
    10801 ttccgcctcc aaaaccggcg tgccgatatt gcccgcgata acggtatcca gcccgcactt
    10861 gatacagaga tagccgacca ggctcgttac cgtggttttg ccgttgctgc cggtaatcgc
    10921 aattaccttg tcgccccggc ggttcacaat gtccgccagc aattcgatgt cgcccaacac
    10981 gcgtccgccg ttttgcttga acgcctcaat atccggctga cgctcgctga tgccggggct
    11041 gagtgccaaa atatcgaaac cgttgtccag cgcatctttc agacggcctg tgtaaaacac
    11101 cagcccgtca aacatcttac cgatttgcga cacgcgctcg ggcttcaact ccgcatcata
    11161 agcggccacc tccgcgccgt ttttgcgcag ataggcaatc atggaaatac ccgtaccgcc
    11221 gagtccggcg acgaggattt ttttgttttc aagcgtcatt ttggttttgt cctaaaacaa
    11281 atcatattgg gcaggtgggg ggatgtccgc ccctgcccaa gccgctttca gacggcatcg
    11341 cgggctgttc aataacctgc cttcaggcgt tggtaaatgt cgcagccgtc ttggtctccg
    11401 ttttgacaag ccttaccaaa ccattcttga gcgagcacaa ggtcttggcg cacgccgcgt
    11461 cctttgtaat acattgcgcc caaattgtat tgggctgctg catttccctg tgctgccgcc
    11521 tgcaagtttt cccgaaaatc cgatacgtca tccgcccaca ccgcttggtt caagcccaag
    11581 gcaatcaggg cggcggcaag ccatttgact gtctgtttca tggttttact tctgttttag
    11641 tataagccgc cgttaacgat agggctgggc ggattgtcgc cgcaggttta ttgcgcgttc
    11701 aaatgccgtc tgaaaggtgt tcagacggca taggttcagc ggattttgag ggtactcaaa
    11761 ccgatcaaca ccaagacgat ggtaataatc caaaagcgga cgacgacttg ggtttctttc
    11821 cagccttttt gttcgtagtg gtgatggatg ggcgccatca ggaagatgcg ttttttggtt
    11881 ttcttatacc agccaacctg aagcataacg gatacggctt ctacgacaaa taatccgccc
    11941 ataatgacga ggacaaactc ttggcggacg atgacggcga cggtaccgag cgcggcaccc
    12001 aatgccaatg caccgacatc gcccataaag acttgcgcgg gataggcgtt aaaccacaag
    12061 aaaccgaggc acgcgccgca catggcggta cagaaaatca ccacttcgtt tgcgccggca
    12121 acgtaaggta attgcaggta ttgggcaaat tgtgagtggc cgctggcata ggcgaagatg
    12181 gcgaggccgg cggcaacgag gacgacgggg aaggtcgcaa ggccgtccaa gccgtcggtg
    12241 aggttgacgg cattggatgt gccgacgatg gtcaggtaag acaacaccaa aaagccgacc
    12301 acgcccagcg gcagggcgat ttgtttgaag aacgggacaa tcaaaatatt gttggcggaa
    12361 ttggcggcaa ggtaaaacaa tgccaaactg gcgataatgg caacgcttga ctgccacacc
    12421 attttgaatt tggcggacac gccgttgggg tctttataga cgactttgcg ccagtcgtcg
    12481 taaaaaccga gtgcgcccgt ggcgagcaat acgcccaaga gaatccagat atacgggttt
    12541 gcccagttgc cccacaacag ggtggacacg gtaatggcgg tcagaatcag cgaaccgccc
    12601 atcgtcggcg tgccgttttt gacgaggtgg gtttgcggac cgtcggtacg cactgcctgc
    12661 ccgcatttga gcgcggtcag cctgcgtatc gtccacgggc cgaacatcag ggaaaacgct
    12721 aaggcggtca acgccgccat gacggcgcgg aatgtggtgt attgaaaaat attcagaccg
    12781 gttaaccagt tgctgaaatg tgcgagccat aaaaacatgg ggcttccttt ttttgttttg
    12841 t
//
LOCUS       DAXIFD010000045        12794 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.045, whole genome shotgun sequence.
ACCESSION   DAXIFD010000045 DAXIFD010000000
VERSION     DAXIFD010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.045"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            85..2091
                     /locus_tag="ACFOCN_000889"
     CDS             85..2091
                     /locus_tag="ACFOCN_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase"
                     /protein_id="HFC6970063.1"
                     /translation="MADMKKITPQNLRPLLSESLGHTDFVNVLNALIKFLRRGGKKCA
                     GERFDLIIDTFKQDRELLSRFSRCFYIWLAQIHIYPALIKLGIFSRHSFAREMGIRIY
                     ERFSPSYKDFANLGEVFLYLFHSENDDKWLQTLNIRQWLVLYELIRSHAEPSKLQTAG
                     IRLADARLRAIEMLSVWTASEAIEPDLIRIAPRLLEADSSFVALQRETAKLVEHYRNG
                     TAPYDTAHLEVMFDQCFSQIDYLRRKGTGAGSGSSVKVAHLLERLRQTVDRLKLLTDI
                     QTGAGNSNRLTIALMNSLIYAAVEQYSTRHLRRSSIRMLARSITENKSHHGEHYITRN
                     RKEYFKMFYSAAGGGVIIALMALLKIRIGTLGLSPFLTSLSAGFNYGIGFMIIHMLHC
                     TVATKQPAMTAASFAEQVDLNEGGKAVDNKLAKLLIDVCRSQSVAVFGNVSIAILLAC
                     AISFGYAHLYRQPILDAHTAAYQFKSIDIIAYPTLWYAAIAGLWLFCSGIIAGFFDNR
                     ADYLNLRQRLPFNPLLRKIMRPGPRRVLAAYIHKHYGSLVGNFIFGMLLGMTGYFGHL
                     LGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIFSVLAIGLVNLCVSFSLALFVAL
                     RSRGTKIGSIRNLIKSFWNQIKSNPCILFLPPAKEQGHPPSDKP"
     gene            complement(2214..3306)
                     /gene="mltB"
                     /locus_tag="ACFOCN_000890"
                     /pseudo
     CDS             complement(2214..3306)
                     /gene="mltB"
                     /locus_tag="ACFOCN_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
     gene            complement(3455..4882)
                     /locus_tag="ACFOCN_000891"
     CDS             complement(3455..4882)
                     /locus_tag="ACFOCN_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6970064.1"
                     /translation="MIHTEPSAQPSTMDTAAFLKHIESAFRRIFSDGIDLMRYLPEDK
                     WLALKQAGLLLPFLDKRHGGRKGSQFEIQEVLRIAGHYGVPVTLRTGIEGALVLQPLQ
                     EFGDEAQIAQGLDMVFKGEGGGLGVTEPETSGAAIAREMQSYYEYTDGQTIYVNAAKY
                     WQGNSQSDFLLVAAKERKNGKLAKVIDLLLVPKTYIRCETLASEGLRAVRYAVNRIDA
                     EMPATAVMKLSQSDAAGLRAFQNIFIRSRLQLIGMTHGIMEYILENLERYVRNDIRFV
                     DYERREIRRRHQVSEILYRYVCHSVSPVAPVAHQLMEANIVKTLATEYTYAAAQMLQK
                     LLGAKGFERGHTAGNIAIDIRPFTIFEGPNDMLYAEIYDQFVRATAEEKEAGMKLDKN
                     QTLLDRLQTDARFAAVARDYTLPEDIRSFLQEHTLTDACALQKVFIGKIIARLFVFVQ
                     AEHEDTAAFLLNDIRKDILDCRYCG"
     gene            5067..8972
                     /gene="mfd"
                     /locus_tag="ACFOCN_000892"
     CDS             5067..8972
                     /gene="mfd"
                     /locus_tag="ACFOCN_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HFC6970065.1"
                     /translation="MTYPIPKPREKSRWPNLSQGSLPLALARYLPHKRLKVVLTQDAE
                     QALRLQTAWRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLF
                     VPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVR
                     GGIVDLFPMGSEMPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEA
                     QKIFRSRFREEVDGNPNDAAVYKAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDAL
                     FVSLGDVHAEANRFWSDVKSRYAMAQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLP
                     DVSGKEHALPDLAVNRQSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGL
                     KAKSVSDWQGFLSAHEPLMITVAPLAYGFKLGGLQSPNQQQTTSASEGEGDAVTDQTE
                     FSASATNPLPSPLPQEREQSAAAVSDDLKTKSSLHPVANNLHGQIRQQPTPSPVGEGW
                     GEGKAVAAQTEFSAAATKPLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLH
                     GQIQQQPAPSPVGEGWGEGKAVAAQSAIAVITESDLYQYVARSRVHNRRKKHAAVSDG
                     LLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAGEAQLYVPVSQLH
                     LISRYSGQAHENVALHKLGSGAWNKAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEI
                     NELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAF
                     VAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKATKAALEGLAD
                     GTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPI
                     PRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHN
                     EVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGI
                     DIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAA
                     ADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDLKKGRQPD
                     LDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKRLAVCETVQQINAIHEELVDRFG
                     LPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNNNVDPTEIILLIQNDKK
                     YRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK"
     gene            9121..9504
                     /gene="panD"
                     /locus_tag="ACFOCN_000893"
     CDS             9121..9504
                     /gene="panD"
                     /locus_tag="ACFOCN_000893"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HFC6970066.1"
                     /translation="MFRTMLGGKIHRATVTEADLNYVGSITVDQDLLDAAGIYPNEKV
                     AIVNNNNGERFETYTISGKRGSGVVCLNGAAARLVQKGDIVIIMSYVQLSEPEIAAHE
                     PKVVLVDGNNKIRDIISYEPPHTVL"
     gene            9526..10368
                     /gene="kdsA"
                     /locus_tag="ACFOCN_000894"
     CDS             9526..10368
                     /gene="kdsA"
                     /locus_tag="ACFOCN_000894"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HFC6970067.1"
                     /translation="MDIKINGITVGNDAPFVLFGGINVLEDLDSTLQTCAHYVEVTRK
                     LGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPV
                     AEVCDVIQLPAFLARQTDLVAAMAETGNVINIKKPQFLSPSQMKNIVEKFREAGNGKL
                     ILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQA
                     LDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKALDDLIKSQPI
                     LTIE"
     gene            10383..10823
                     /locus_tag="ACFOCN_000895"
     CDS             10383..10823
                     /locus_tag="ACFOCN_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HFC6970068.1"
                     /translation="MMQTFRKISLYAATLWLGMQIMAGYIVAPVLFKMLPKMQAGEIA
                     SVLFDILSWSGLAVWGAVLAAAFAALTRRQTALLLFLLSALAANRFLITPVIEALKYG
                     HENWLLSFVGGSFGMWHGISSIVFMATALLSAVLSWQLSGKEAV"
     gene            10870..12156
                     /gene="eno"
                     /locus_tag="ACFOCN_000896"
     CDS             10870..12156
                     /gene="eno"
                     /locus_tag="ACFOCN_000896"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HFC6970069.1"
                     /translation="MSAIVDIFAREILDSRGNPTVECDVLLESGVMGRAAVPSGASTG
                     QKEALELRDGDKSRYSGKGVLKAVEHVNNQIAQALIGIDASEQSYIDQIMIELDGTEN
                     KGNLGANATLAVSMAVARAAAEDAGLPLYRYLGGAGPMSLPVPMMNVINGGEHANNSL
                     NIQEFMIMPVGAKSFREALRCGAEIFHALKKLCDSKGFPTTVGDEGGFAPNLNSHKEA
                     LQLMVEATEAAGYKAGEDVLFALDCASSEFYKDGKYHLEAEGRSYTNAEFAEYLESLV
                     NEFPIISIEDGMDENDWEGWKLLTEKLGGKVQLVGDDLFVTNPKILAEGIEKGVANAL
                     LVKVNQIGTLSETLKAVDLAKRNRYASVMSHRSGETEDSTIADLAVATNCMQIKTGSL
                     SRSDRMAKYNQLLRIEEELAEAADYPGKAAFYQLGK"
     gene            12170..12448
                     /gene="ftsB"
                     /locus_tag="ACFOCN_000897"
     CDS             12170..12448
                     /gene="ftsB"
                     /locus_tag="ACFOCN_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HFC6970070.1"
                     /translation="MKWVTVVLSFALVCCQYSLWFGKGSIGRNSSLREQIAVQEEKNQ
                     TLALRNHSLAAEVYDLENGQEAISEIARVELGYIQDGETFYRLIRHNR"
     gene            complement(12489..12779)
                     /gene="yfaE"
                     /locus_tag="ACFOCN_000898"
     CDS             complement(12489..12779)
                     /gene="yfaE"
                     /locus_tag="ACFOCN_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I ribonucleotide reductase maintenance
                     protein YfaE"
                     /protein_id="HFC6970071.1"
                     /translation="MARIGTNKGFFELLEGETLLEGLERTGHMVEYQCRSGYCGSCRV
                     KILEGSVTYRKPPLAFLGRDEILPCCCYVEGDVRLDCGLSGEDEGLSDSLLK"
BASE COUNT         3005 a         3873 c         3227 g         2689 t
ORIGIN      
        1 aaaccggcgg aaaatgcgcc gcccaccgca ggcgcgccct ccccgctatc ggggcgttta
       61 acgccggatt gccgatgcgg tacaatggct gatatgaaga aaattacccc tcaaaacctg
      121 cgccccctgc tttcggaaag cttgggacat accgattttg tcaacgtcct caacgcactg
      181 attaaatttt tgcgccgtgg cggcaaaaaa tgtgcggggg aacgtttcga cctgattatc
      241 gacacattca aacaagacag ggaattgctg tcccgcttca gccggtgttt ttacatctgg
      301 ctcgcgcaaa tacacattta tccggcactc atcaaactcg gcatcttctc gcgccacagc
      361 tttgcccggg aaatgggcat acgcatctac gaacgcttca gcccgtcata taaagatttt
      421 gccaacttgg gcgaagtctt cctttatctt ttccattccg aaaacgacga caaatggctg
      481 caaacgctca atatccgcca atggctggtt ttatacgaac tcatccggag ccacgccgaa
      541 ccgtccaaat tgcagacggc gggcatccgc cttgccgatg cgcgtttgcg cgccatcgaa
      601 atgctgtctg tctggacggc atccgaagcc atcgaacccg acctcatccg catcgccccg
      661 cgcctgctgg aagccgattc ttccttcgtc gccctccaac gcgaaaccgc caaactggtc
      721 gaacactacc gcaacggcac cgcgccttac gacaccgccc acctcgaagt gatgttcgac
      781 caatgtttca gccagattga ctatttgcgc cgcaaaggga cgggcgccgg ctccggttcg
      841 tcggtcaaag tcgcccacct gctcgaacgg ctccggcaga ccgtagaccg tctgaagctg
      901 ctcaccgaca tccaaaccgg cgccggcaac agcaaccgcc tgaccatcgc gctgatgaac
      961 tccctcatct acgcggcggt cgaacaatac agcacccgcc acctgcgccg cagcagcatc
     1021 cgtatgctcg cccgcagcat taccgaaaac aaaagccacc acggcgaaca ctacatcacc
     1081 cgcaaccgca aagaatattt caaaatgttc tactcggcgg caggcggcgg cgtcatcatc
     1141 gccctgatgg cgctgctcaa aatccgcatc ggcacactcg gcctcagccc cttcctcact
     1201 tccttgtcgg ccgggttcaa ctacggcatc ggctttatga tcatccatat gctgcactgc
     1261 accgtcgcca ccaagcagcc cgcgatgact gccgccagct ttgccgaaca ggtcgatctc
     1321 aacgaaggcg gcaaagcggt ggacaacaaa ctcgccaagc tcctcatcga cgtatgccgc
     1381 tcccaaagcg tcgccgtctt cggcaacgtt tccatcgcca tccttttggc gtgcgccata
     1441 tcgttcggct atgcccatct gtaccggcag cccatactcg atgcccacac cgccgcctac
     1501 cagttcaaat ccatagacat catcgcttac ccgacgctgt ggtatgccgc cattgcaggt
     1561 ctgtggctgt tctgctccgg catcatcgca ggttttttcg acaaccgcgc cgactacctc
     1621 aacctgcgcc aacgcctgcc tttcaacccc ttgctgcgta aaatcatgcg ccccgggccc
     1681 cgccgcgtcc tcgccgccta catccacaaa cactacggct cgttggtagg caacttcatc
     1741 ttcgggatgc tcttgggtat gaccggctat ttcggacacc tcctcgggct gccgctggac
     1801 atccgccacg tcgccttttc ctccgccaac ctcggctatg ccgccgtcag cggcaacgtc
     1861 ggtttgggca cgttcgtact cggcattttc agcgtcctcg ccatcggcct ggtcaacctc
     1921 tgcgtcagtt tcagcctcgc cctcttcgtc gccctgcgct cgcgcggcac gaaaatcggc
     1981 agcatccgca atctgattaa aagtttttgg aatcagatta aaagcaatcc ctgcatactt
     2041 ttcctcccgc ccgccaaaga acagggacat cctccttcgg acaagccttg accggcaatg
     2101 ccgtctgaag cgggattcgc cccgaatacc gccctgatgc gggaaatccc cataaaagga
     2161 tgcaaaaatg ccgtctgaat cgaaacgtgg ttcagacggc attttaaaaa acattacaat
     2221 cccgggccgc caagcgaatt ggcaatgtcc ctgaccgccg ttacatacat ccgactgtga
     2281 ttgtactgcc ataccgtata aaaattgttc aagcccaaat aatattcaaa cacgccgggt
     2341 gcggtttcca gtttgaacaa aaccgccttt tcatcatcgg caagctcttc gccggggatg
     2401 atgccgtacg ccttcaaatc cgccaccgtc cgcgtcaggg cggttttttc gccaatgatt
     2461 gcctgaacat ccgcacccgg cgccaatgtt gcagacacca gtattttccc gcccgtgcgc
     2521 caaccgtgct gcttcatata attggcaacc gatgccgcga catcgccgat gttgccccat
     2581 atgtcccgat gtccgtcccc gtcataatcc accgcccatt tccggtagct cgaaggcata
     2641 aattgcggca tccccattgc gcccgcatag ctgcctttaa aggcgaaaac atcgccgcct
     2701 tcttcttttg ccagctttaa aagctcgacc aattcttttt ggaaaaaccc ggcgcggcgg
     2761 gggtaatcaa agcctaaggt cgccaatgcg tccgccacac ggaaactgcc cgtatttttg
     2821 ccgtaattcg tttcaatccc gataaccgcc acgataagtt cggcaggcac gccgtatttt
     2881 tgcgccacat catcgataag cgcgcggttt tccgcataaa accggcgcgc gccgcgaaat
     2941 ttcgccttgc ccgaatttcc cgtgcggaac acataccacg gacgcgatgt ggagggtcgg
     3001 tgcataatct tgacgatgtc cgccttgtaa gccgctttgt caaaaaaatc ctgccattcc
     3061 gcccgggaaa aatccccttt cccgacttca tcgtccacaa aacggcggac atttgcattg
     3121 gcggcaaacc cgctgtcgga taccggtacg gctgccgcgt caaacgcggg gcggctttct
     3181 tttttcattt catccgcgcg ggggggcttg ggcttcattt acccggggcg ggcgtgcctc
     3241 catcgccgta caggcagaca aagccgccaa acaaattgcc agcggcagta tttttctctt
     3301 tttcataaat atgttccgaa caaatagggt aagtgggaaa gcggcgcaag gggcgcggtg
     3361 cgaaatgcgg catccgccgc aatcggcggc tttgtggaat accgcgcgtt gccttttgca
     3421 ccgcctgaaa tccgtatgcc gccgtatttg cccgctatcc gcaatatcgg cagtccaata
     3481 tatctttgcg gatgtcgttc agcaggaagg ctgcggtgtc ttcgtgttcc gcctgtacga
     3541 agacaaagag tcgggcgatg attttgccga tgaagacttt ttgcagggcg caggcgtcgg
     3601 tcagggtgtg ttcctgcagg aagctgcgga tgtcttcggg caaagtgtag tcgcgggcga
     3661 cggcggcaaa gcgggcatcg gtttgcaggc ggtcgagcag ggtttggttt ttgtccaact
     3721 tcatgcctgc ttctttttct tcggcggtgg cgcggacgaa ctggtcgtaa atttcggcat
     3781 aaagcatatc gttcgggcct tcaaaaatcg tgaagggacg gatgtcgata gcgatattgc
     3841 cggcggtgtg tccgcgttca aaacccttcg cgcccaaaag tttttgcaac atttgcgcgg
     3901 cggcgtaagt gtattccgtg gcgagggttt tgacgatgtt cgcctccatc agctgatggg
     3961 cgacgggtgc aacgggcgaa acggaatggc agacgtagcg gtaaagaatc tcggaaacct
     4021 gatggcggcg ccggatttcg cggcgttcgt aatcgacgaa tctgatgtcg ttgcggacgt
     4081 atcgttccag gttttcaagg atgtattcca taatgccgtg cgtcatgccg atcagttgca
     4141 ggcggctgcg gataaagatg ttttggaacg cgcgcaaacc tgcggcgtcg ctctgggaga
     4201 gtttcatcac ggcggttgca ggcatttcgg catcgatgcg gttgacggcg taacggacgg
     4261 cgcgcaagcc ttcggatgcg agggtttcgc agcggatgta tgttttgggg acgagcagca
     4321 ggtcgatgac tttggcgagt ttgccgtttt tgcgttcttt ggcggcaacg aggaggaagt
     4381 cgctttgcga gttgccctgc cagtattttg cggcgttgac gtaaatggtt tgtccgtcgg
     4441 tatattcgta gtaagactgc atttctcggg caatcgccgc gccggaggtt tcgggttcgg
     4501 taacgcccaa accgccgccc tcgcctttga aaaccatgtc caaaccctgt gcgatttgcg
     4561 cttcatcgcc gaactcttgc agtggctgca acaccagcgc gccttcgatg ccggtacgca
     4621 gcgtaacggg tacgccgtaa tgccccgcaa tccgcaatac ttcctgaatt tcaaactggc
     4681 tgcccttgcg gccgccgtgt cttttgtcga ggaagggcaa cagcaaaccc gcctgcttca
     4741 aggcaagcca tttgtcttcg ggcaggtatc gcatcaggtc gataccgtct gaaaaaatgc
     4801 ggcggaatgc ggattcgatg tgctttaaaa aagcagccgt gtccatagtt gacggctgcg
     4861 cgctcggttc ggtgtgtatc atcggcttcc tctgtcggtt cccattaatc ggcggccggt
     4921 caaaccgcct gccacagttt agagttgatt ttctaaactt taccacaaag tgcgccgggc
     4981 aacaatccgc cggcttttca gacggcatcg cgcaccctcc cgtgctaaaa tgaccgtttg
     5041 catcactgtc cgccgattgc cgcactatga cctaccccat ccccaaaccc cgtgaaaaat
     5101 cccgttggcc caatctttcg caaggctcgc tgcccttggc tttggcgcgt tatctgccgc
     5161 acaagcggct caaggtcgtg ctgacccaag atgcggaaca ggcgttgcgc cttcagacgg
     5221 catggcggtt tttccgtccg cacgacacgg cggtgttctt gccggactgg gaaacgctgc
     5281 cttacgagcg tttttctccg catcaggatt tggtgtcgga gcggctctcg gcgttgtggc
     5341 agattaagag cggcgcggcg gacgtgttgt ttgtgccggt tgccacggcg atgcagaagc
     5401 tgccgcccgt gccgtttttg gcggggcgca cgttttggct gaaaacagga cagactttgg
     5461 atataggccg tctgaaaacc gatttggtag atgcgggcta caaccatgtt tcccatgttg
     5521 ttgcggcggg cgagtttgcc gtgcgcggcg gcattgtcga tttgttcccc atgggcagcg
     5581 aaatgcccta ccgcatcgat ttgtttgacg atgaaatcga cagcatcaaa acctttgata
     5641 cggacacgca gcgcaccatc tcccccgttt ccgaaatccg cctgctgccg gcgcacgaat
     5701 tccccaccga cagcgaggcg caaaaaatct tccgcagccg cttccgcgag gaagtcgatg
     5761 gtaatccgaa cgatgcggct gtatacaaag cagtaagcaa cggccacttc ggtgcgggcg
     5821 tggaatatta cctgccgctg ttttttgaaa acgagctgga aacgctgttt gactatatcg
     5881 gcgaagacgc gctgtttgtc tctttgggcg atgttcacgc cgaggcaaac cgcttttgga
     5941 gcgacgtcaa atcgcgttac gccatggcgc agggcgacga aacctatccg cctttgcttc
     6001 cacagcattt gtatctctct gccgatgttt ttgcaggccg tctgaaaaac tacggacagg
     6061 tgctgcccga tgtttccggc aaggaacacg ccctccccga ccttgccgtc aaccgacaat
     6121 ccgacgagcc tttgcaggca ttgaaggatt ttcagacggc gtttgaagga cggattttgc
     6181 tgtgcgccga aagtttggga cggcgcgaaa ccatgctcgg cttcttgcag caaaacggtt
     6241 taaaagccaa aagcgtgtct gattggcaag gcttcttgtc ggcacatgag ccgctgatga
     6301 ttacagtggc accgttggct tacggattca aactgggcgg attgcaatcc ccgaaccagc
     6361 agcaaactac ttccgcctcc gaaggagaag gcgatgcggt taccgaccaa accgaatttt
     6421 ccgcatccgc aacaaaccct ctccctagcc ctctcccaca ggagagggaa caaagtgcag
     6481 ccgccgtttc agacgacctg aaaaccaaaa gcagcctgca tcccgtcgca aataatctgc
     6541 acgggcaaat ccgacagcaa cctactccct cccccgtggg ggagggttgg ggagagggca
     6601 aagcagttgc cgctcaaacc gaattttccg cagccgcaac aaaacctctc cctagccctc
     6661 tcccacagga gagggaacaa agtgcagccg tcgtttcaga cagtctgaaa gcagccgccg
     6721 tttcaaccga aagcagcctg ccccccggta aaagtaatct gcacgggcaa atccaacagc
     6781 aacctgcccc ctcccccgtg ggggagggtt ggggagaggg caaagcagtt gccgctcaaa
     6841 gtgccatcgc cgtcatcacc gaatccgatc tctaccaata cgtcgcccgt tcgcgcgtcc
     6901 acaaccgccg caagaaacac gccgccgttt cagacggtct gttgcgcgac cttgccgaaa
     6961 tcaacatcgg cgaccccgtc gttcacgaag aacacggcat cgggcggtat atgggcttga
     7021 tcacaatgga tttgggcggc gaaaccaacg aaatgatgtt gcttgaatat gcaggcgaag
     7081 cgcagcttta tgtgcctgtt tcgcaactgc atttaatcag ccgctactcc ggtcaggcgc
     7141 atgaaaacgt cgccctgcac aagctcggca gcggcgcgtg gaacaaagcg aaacgcaaag
     7201 ccgccgaaaa agcgcgcgat accgccgccg agttgctcaa cctctacgcc caacgcgctg
     7261 cccaatcggg acacaagttt gaaatcaacg agttggacta tcaggcgttt gccgacggtt
     7321 tcggctacga ggaaaccgaa gaccaggccg ccgccatcgc cgccgtgatt aaagacctga
     7381 cacaggcgaa gccgatggac cgactcgtgt gcggcgatgt cggctttggc aaaaccgaag
     7441 tcgccctgcg cgccgcgttt gtggcggtga tgggcggcaa acaggtcgcc gtactcgccc
     7501 caaccacgct tctagtcgag cagcacgcgc aaaactttgc cgaccgtttc gccgatttcc
     7561 ccgtgaaagt cgccagcctt tcgcgtttca acaacagcaa agccaccaaa gccgcactgg
     7621 aaggcttggc ggacggcacg gtcgacatcg ttatcggcac gcacaaattg gtgcaggaca
     7681 acatcagatt caaaagctta ggtttagtga ttatcgatga agaacaccgc ttcggcgtgc
     7741 gccagaaaga acagctcaaa cgcctgcgcg ccaatgtcga tatccttacc atgaccgcca
     7801 cgccgattcc gcgcaccctc agcatggcac tcgaaggcct gcgcgacttc tcgctgatta
     7861 ccaccgcgcc cagccgccgc ctcgccgtga aaacctttgt caaaccgttc agcgaaggca
     7921 gcgtgcgcga agccgtgttg cgcgaactca aacgcggagg acaggtattt ttcctgcaca
     7981 atgaagtaga tacgattgaa aatatgcgcg agcggctgga aaccctgctg cccgaagccc
     8041 gcatcggcgt ggcgcacgga caactgcgcg agcgcgagct ggaacaagtc atgcgcgact
     8101 ttttacagca acgattcaac gtgttgctct gttccaccat catcgaaacc ggtatcgaca
     8161 ttcccaacgc caacaccatc atcatcaacc gcgccgacaa attcggactg gcgcaactgc
     8221 accagcttcg cgggcgcgtc ggacgcagcc accaccaagc ctacgcctac ctgctcacgc
     8281 ccgaatacat caccaaagac gcagaaaaac gcctcgacgc catcgcggca gcagacgaac
     8341 tcggcgcagg tttcaccctc gccatgcagg atttggaaat ccgcggcgca ggcgaaatcc
     8401 tcggcgaagg gcagtccggc gaaatgatac aggtcggctt cacgctctac accgaaatgc
     8461 tcaaacaagc cgtgcgcgat ctcaaaaaag gccgccaacc cgacctcgac gcgccgctgg
     8521 gcatcaccac cgaaatcaaa ctgcacagcc ccgccctact gcccgaaagc tactgccccg
     8581 acatccacga gcgtctcgtc ctctacaaac gcctcgccgt ctgcgaaacc gtgcagcaaa
     8641 tcaacgccat acacgaagaa ctcgtcgacc gcttcggcct gcccgaacaa cccgtcaaaa
     8701 cccttatcga aagccaccac ctgcggctta tggcaaaaga attgggtatc gatgccattg
     8761 atgcggccgg cgaagcggta acggtaacct tcggtaaaaa caataatgtc gatccaaccg
     8821 aaatcatcct gctgattcag aacgacaaaa aataccgcct tgccggcgcc gataagctgc
     8881 ggtttaccgc agagatggaa aatatcgagg tcagaatcaa caccgtaaaa aacgttttaa
     8941 aaaccttgca aaacagatgc ctgcccaaat aaagccgaca ccgcaatgcc gtctgaaaca
     9001 ccgttttcct tgtccgaaag ccgccattat gaatttgaag gaaactccac tataatacgg
     9061 cattcagatc tccagacggc atcgcgcccg tcagaccgca cacaaaccaa aaggaaatac
     9121 atgttccgta ctatgcttgg cggaaaaatc caccgcgcca ccgttaccga agccgatttg
     9181 aactacgtcg gcagtattac cgtcgatcaa gacctgttag acgcagcagg catctacccc
     9241 aacgaaaaag tcgccatcgt caacaacaac aacggcgaac gttttgaaac ctataccatt
     9301 tcaggcaaac gcggcagcgg cgtggtctgc ctgaacgggg cggcggccag gctggtacag
     9361 aaaggcgata tcgtcatcat catgtcttac gtccaactct ccgaacccga aatcgccgca
     9421 cacgaaccca aagtcgtctt ggtagacgga aacaacaaaa tccgcgacat catctcctac
     9481 gagccgccgc acaccgtgct gtaaccctga aaacggacat tgaccatgga tattaaaatc
     9541 aacggcatta ccgtcggtaa cgatgctcct ttcgtactgt tcggcggcat caacgtttta
     9601 gaagatttgg attccaccct ccaaacctgt gcgcattacg tcgaagttac ccgaaaactc
     9661 ggtattccct atatctttaa agcctctttc gacaaggcaa accgttcctc catccattct
     9721 tatcgcggcg taggcttgga agaaggctta aagatttttg aaaaagtcaa agcagagttc
     9781 ggcatccccg tcattaccga cgtacacgaa ccccatcagt gccaacccgt cgccgaagtg
     9841 tgcgatgtca tccagcttcc cgcctttctt gcgcggcaga ccgatttggt ggccgcaatg
     9901 gcggaaacgg gcaatgtcat caacatcaaa aaaccccagt tcctcagccc ttcgcaaatg
     9961 aaaaacatcg tggaaaaatt ccgcgaagcc ggcaacggga aactgatttt atgcgaacgc
    10021 ggcagcagct tcggctacga caacctcgtt gtcgatatgc tcggtttcgg cgtgatgaaa
    10081 caaacctgcg gcaacctgcc ggttattttc gacgttaccc attccctgca aacccgcgat
    10141 gccggttctg ccgcatccgg cggtcgtcgc gcacaggctt tggatttggc acttgcaggc
    10201 atggcaaccc gccttgccgg cctgttcctc gaatcgcacc ccgatccgaa actggcaaaa
    10261 tgcgacggcc ccagcgcgct gccgctgcac cttttagaag attttttaat ccgcatcaaa
    10321 gcattggacg atttaatcaa atcacaaccg attttaacaa tcgagtaaca cggtttcgcc
    10381 ttatgatgca gactttccga aaaatcagcc tgtatgccgc aaccttgtgg ctcggtatgc
    10441 agattatggc gggttatatc gtcgcgccgg tgctgttcaa aatgctgccc aaaatgcagg
    10501 cgggcgaaat tgccagcgta ttgttcgaca tcctctcttg gagcgggctt gccgtttggg
    10561 gcgcggtact ggctgccgcc tttgccgccc taacccggcg gcaaaccgcc ctgctgcttt
    10621 ttttattgtc cgcccttgcc gccaaccgat tcttgattac acccgttatc gaggcgctga
    10681 aatacgggca tgagaattgg ctgttgtcgt ttgtaggcgg atccttcgga atgtggcacg
    10741 gcatttccag tattgttttt atggcaaccg ccctactttc agcagtttta agttggcagc
    10801 tttccggcaa agaggccgtc tgaagccctc ccatttttta cctcccttca cttcacttgg
    10861 agaacattca tgagcgcaat cgttgatatt ttcgcccgcg aaattttgga ctcacgcggc
    10921 aaccccacag tcgagtgtga tgtattgctc gaatctggcg taatgggacg tgcagccgta
    10981 ccgagcggtg cgtccaccgg tcaaaaagag gctttggaac tgcgcgacgg cgacaaatcc
    11041 cgttattcgg gcaagggcgt attgaaggcg gtcgaacacg tcaacaacca aatcgcccaa
    11101 gccctcattg gtatcgatgc cagcgaacaa tcttatatcg accaaatcat gatcgaattg
    11161 gacggtactg aaaacaaagg taacttgggt gccaacgcga ctttggccgt ttctatggcc
    11221 gtagcacgcg cagccgctga agatgcaggg ctgccgcttt accgctactt gggcggcgca
    11281 ggtccgatgt ccctgcccgt accgatgatg aacgtcatca acggcggcga acacgccaac
    11341 aacagcctga acatccaaga gtttatgatt atgcccgtcg gcgcaaaatc tttccgcgaa
    11401 gcgttgcgct gcggtgcgga aattttccac gccttgaaaa aactgtgcga cagcaaaggc
    11461 ttcccgacca cagtcggcga cgaaggcggt ttcgccccca acctgaacag ccacaaagaa
    11521 gccctgcaac tgatggtcga ggcgaccgaa gccgccggct acaaagcggg cgaagacgta
    11581 ttattcgcat tggactgcgc ctccagcgag ttctacaaag acggcaaata ccacttggaa
    11641 gccgaaggcc gctcctacac caacgcggaa tttgccgaat atctggaaag tctggtcaac
    11701 gagttcccca tcatctccat cgaagacggc atggatgaaa acgactggga aggctggaaa
    11761 ctgctgaccg aaaaactggg cggcaaagtc caactcgttg gcgacgacct cttcgttacc
    11821 aacccgaaaa tccttgccga aggcattgaa aaaggcgtgg caaacgcact attggtcaaa
    11881 gtcaaccaaa tcggtacttt gagtgaaacc ctgaaagccg tcgacttagc caaacgcaac
    11941 cgctacgcca gcgtaatgag ccaccgctcc ggcgaaaccg aagacagcac cattgccgac
    12001 ttggcagtcg ccaccaactg tatgcagatc aaaaccggtt ctttgagccg ttccgaccgc
    12061 atggcgaaat acaaccaact gctgcgtatc gaggaagaat tggcggaagc cgccgactac
    12121 cccggcaaag ccgcattcta ccaactgggc aaataaaaaa ggttaaggta tgaagtgggt
    12181 aactgtcgtt ttatccttcg cacttgtctg ttgccaatac agcctctggt tcggcaaagg
    12241 cagcatcgga cgcaacagca gtctgagaga acagattgcc gttcaagaag aaaaaaacca
    12301 gacactcgcc ctacgcaatc attcccttgc cgccgaagtc tatgatttgg aaaacggtca
    12361 agaagccatt tcggaaatcg cccgggtaga actgggttat atccaagacg gtgaaacctt
    12421 ttaccgactc atcaggcata accggtaata ccgtcaaaaa gccgtccgaa ccaatgttcg
    12481 gacggctttt atttcaacaa actgtcagac agcccctcat cctcccccga caaaccgcaa
    12541 tccagcctga catccccctc gacgtaacag cagcacggca gtatctcgtc ccgccccaaa
    12601 aaagccaaag gcggcttccg ataagtaacg cttccctcca aaatcttcac ccggcacgat
    12661 ccgcaatatc cgcttcggca ctgatattcc accatatgcc ccgtccgttc caagccttcc
    12721 aacagggtct cgccctccaa gagctcaaaa aaacccttat tcgtaccaat gcgcgccatt
    12781 tccgaccaat caaa
//
LOCUS       DAXIFD010000046        12400 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.046, whole genome shotgun sequence.
ACCESSION   DAXIFD010000046 DAXIFD010000000
VERSION     DAXIFD010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12400
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.046"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..220
                     /locus_tag="ACFOCN_000899"
     CDS             <1..220
                     /locus_tag="ACFOCN_000899"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970072.1"
                     /translation="SSLHIENAAQANLQFASLVLALSHGERGLGCRLPLRFRQILTSL
                     IPRFSFAEAALSDDLLEHHRYTHLRNAV"
     gene            complement(231..554)
                     /locus_tag="ACFOCN_000900"
     CDS             complement(231..554)
                     /locus_tag="ACFOCN_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6970073.1"
                     /translation="MDIVQLGSAELKAWMDEGRMFCLLDVRTDEETAVCSLPNALHIP
                     MNLIPLRQNELPDDVPLVVYCHHGIRSLHTAMYLADAGFENLYNLQGGIDAWAAEIDG
                     NMMRY"
     gene            complement(634..1290)
                     /locus_tag="ACFOCN_000901"
     CDS             complement(634..1290)
                     /locus_tag="ACFOCN_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HFC6970074.1"
                     /translation="MDFEKARFNMVEQQIRPWDVLDFDVLDALAEIPRELFVDEDLQG
                     LAYADMALPLANGHKMLEPKVVARLAQGLKLTKNDTVLEIGTGSGYATALLAKLAGRV
                     VSDDIDAEQQNRAKAVLDGLGLDNIDYVQNNGLTELSAGAPFDAVYVGGAVNLVPEVL
                     KEQLKDGGRMVVIVGRKPVQRALLITRKGDVFEEKVLFDTLVAHLDDKDADPFGGFQF
                     "
     gene            complement(1392..1919)
                     /locus_tag="ACFOCN_000902"
     CDS             complement(1392..1919)
                     /locus_tag="ACFOCN_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HFC6970075.1"
                     /translation="MYATIGDVMHALHFSASDKAALYREVLPQIESVVADETDWVANL
                     ANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGT
                     VVVGDVDAHPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGEL
                     AKILEKRFEASRQAV"
     gene            2079..2852
                     /gene="tpiA"
                     /locus_tag="ACFOCN_000903"
     CDS             2079..2852
                     /gene="tpiA"
                     /locus_tag="ACFOCN_000903"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HFC6970076.1"
                     /translation="MYHQIGMWDQKWVIGNWKMNGRLQNNNSLMHRFRILPTAERVLI
                     GLAAPTVYLLQLHNAMQIVLNNRILTCAQDVSRFPDNGAYTGEVSAEMLADTGTDIVL
                     IGHSERSLYFGEKNEIQRRKMENVLNVGLIPLLCVGESLEEREAGKEHEVIAHQLSIL
                     QGLDTKNITVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDVKIRVLYGGSV
                     KADNAADIFAVPYVDGALVGGASLSYDSFTAIISAAQNA"
     gene            2859..3209
                     /gene="secG"
                     /locus_tag="ACFOCN_000904"
     CDS             2859..3209
                     /gene="secG"
                     /locus_tag="ACFOCN_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HFC6970077.1"
                     /translation="MEAFKTLIWIVNIISALAVIVLVLLQHGKGADAGATFGSGSGSA
                     QGVFGSAGNANFLSRSTAVAATFFFATCMAMVYIHTHTTKYGLDFSNVQQTQQAPKPI
                     SNTEPSAPVPQQQK"
     gene            3223..3308
                     /locus_tag="ACFOCN_000905"
     tRNA            3223..3308
                     /locus_tag="ACFOCN_000905"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3257..3259,aa:Leu,seq:gag)
     gene            4109..4477
                     /locus_tag="ACFOCN_000906"
     CDS             4109..4477
                     /locus_tag="ACFOCN_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFC6970078.1"
                     /translation="MRIFKNQWIVKFAKKHKISDSELLEAVERADNGLIDADLGGGVI
                     KQRIARQGQGRSGGYRSLILFKQADRAFFVYAFAKNDRENISDKELDVYRKAAAYYLK
                     YTRAELAALKEDGIITEIES"
     gene            4474..4785
                     /locus_tag="ACFOCN_000907"
     CDS             4474..4785
                     /locus_tag="ACFOCN_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6970079.1"
                     /translation="MKYKSEALAAIHEMMEGAYNIGAIDKKTMRGFDKSCLTEIKPLS
                     GGDIKAIREKEALSQAAFAIYLNVGKNHVSAWERGVKKPSGAALKLLTIVKNKGIEAI
                     A"
     gene            4895..5047
                     /locus_tag="ACFOCN_000908"
     CDS             4895..5047
                     /locus_tag="ACFOCN_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970080.1"
                     /translation="MPDRIKPSRNGDGADDIARQQGTAQTGAKPETSPTARHGDFLSP
                     LQGDWI"
     gene            complement(5555..6109)
                     /locus_tag="ACFOCN_000909"
     CDS             complement(5555..6109)
                     /locus_tag="ACFOCN_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970081.1"
                     /translation="MIIGGIGGARTQTGLRFEERTDLRTLFEEIPGYDLRKTYDNAGY
                     EVWFNGELKAYCFKKYEFYRFLKRPGYNINWKDHLSKRLLPDNGLFIIIRDTLFIIEI
                     KFQQTPGSVDEKLQTCDFKRKQYTKLVHSLGWRVEYVYVLNDWFTKPEYKDVLDYIIS
                     VNCHYQFNTIPLRWFGLPDGETNE"
     gene            complement(6106..6915)
                     /locus_tag="ACFOCN_000910"
     CDS             complement(6106..6915)
                     /locus_tag="ACFOCN_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6970082.1"
                     /translation="MIDFDKPAEEDAIYQSRLKKIVSDDLVLYNENSLNVMRKILEKY
                     PNGCFDMIFSDPPYFLSNDGFSCQNGQMVSVNKGNWDKSKGMAADLEFYEEWLRLCYA
                     LLKPNGTIWVCGTFHNIYLIGYLMQTIGYHILNNITWEKPNPPPNLSCRFFTHSTETI
                     LWAKKNKKAKHTFHYEMMKAQNDGKQMKCVWTFPPPNKAEKTFGKHPTQKPLPLLERC
                     ILSASNIGDLIFDPFMGSGTTGVAALKHGRKFCGCELEEDFFELAKKRLEK"
     gene            complement(6908..7720)
                     /locus_tag="ACFOCN_000911"
     CDS             complement(6908..7720)
                     /locus_tag="ACFOCN_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFC6970083.1"
                     /translation="MASKPFLKWAGGKHKLVPFIEHNLPTPTRKRLIEPFCGSAALSL
                     ALDFEHYLLNDINADLIGLFRILKEEKSGFIDYARSFFISENNSDSRFYELREQFNFS
                     KNLHERSALFIYLNRHAFNGLCRYNSKGVFNVPFGRYKSPYFPQQEMEGFIQKSDRVE
                     LMCGDFQMILSQTDNTDTVYCDPPYAPLSPTASFTTYAKESFNLDNQIRLAQSAQQIA
                     PDSQGVLISNHDTEFTRDIYSFAILKTIEVQRNIAAKGSSRKKVGELLAIYD"
     gene            complement(7958..10588)
                     /gene="leuS"
                     /locus_tag="ACFOCN_000912"
     CDS             complement(7958..10588)
                     /gene="leuS"
                     /locus_tag="ACFOCN_000912"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HFC6970084.1"
                     /translation="MQEHYQPAAIEPAAQKKWDDARIFNVSEDASKPKYYCLSMFPYP
                     SGKLHMGHVRNYTIGDVLSRFKLLNGFNVMQPMGWDAFGMPAENAAMKNNVAPAAWTY
                     DNIEYMKTQLKSLGFAIDWARETATCKPEYYRWEQWLFTKLFEKGIVYRKNGTVNWDP
                     VDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITDYAEELLNDLDKLEHWPEQVKT
                     MQRNWIGKSRGMTVRFAVSDDSKQGLEGDYAKLLQVYTTRPDTLMGATYVAVAAEHPL
                     AAAAAADKPELQAFIAECKAGSVAEADMATMEKKGVPTGRYVVNPLNGDKLEVWIANY
                     VLWGYGDGAVMAVPAHDERDFEFAAKYNLPKKQVIAVGDNAFDANRWQEWYADKENGV
                     LVNSGDLDGLDFQTAFDAVAAKLQSQGAGEPKTQYRLRDWGISRQRYWGCPIPIVHCE
                     QCGDVPVPADQLPVVLPENVVPDGMGSPLAKMPEFYETACPCCGGAAKRETDTMDTFM
                     ESSWYFFRYMSPKFSDGMVDPAAAKYWGAVDQYIGGIEHAILHLLYARFFTKLMRDEG
                     LVNVDEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPISAVLKADG
                     LPVVISGTEKMSKSKNNGVDPQELINAYGADTARLFMMFAAPPEQSLEWSDSGVEGAH
                     RFLRRLWRTVYEYLKQGEAVKAFAGSQDGLSKELKDLRHKLHATTAKVSDDYGRRQQF
                     NTAIAAVMELLNQYDKTDTGGEQGRAVAQEVLETAVRLLWPIVPHICETLWSELNGAK
                     LWEAGWPTVDEAALVKSEIEVMVQVNGKLRGKITVAADASKADLEAAALATEGAVKFM
                     EGKPAKKIIVVPGRLVNIVV"
     gene            10855..11370
                     /locus_tag="ACFOCN_000913"
     CDS             10855..11370
                     /locus_tag="ACFOCN_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6970085.1"
                     /translation="MKIKQIVKPGLAVLAAGVLSACATKSNVKADGTTDNPVFPKPYS
                     VTLDNNRGTFPTYDELDLMRPGLTKDDIYKILGRPHYDEGMYGVREWDYLFHFHTPGV
                     GIDPENTSGVEGITTCQYKIIFDKDKFARSFYWNPVFPKDAACPPPAPKAEPQVIIRE
                     IVPAKPKRIRQ"
     gene            11377..11820
                     /locus_tag="ACFOCN_000914"
     CDS             11377..11820
                     /locus_tag="ACFOCN_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HFC6970086.1"
                     /translation="MPFRLFLGILCGLSMVAPVYAQGQPDAVNAYIQKKKVIVNTSKA
                     ELCFADDRQCHPVLIGVATPKGTFGLTLNSTDKPGYGGEVIGFKQEGDFLFALHRVWN
                     QIPSERRNERIASPSVSDRIMTNGCINVSDAVYEKLRHYFVLEVI"
     gene            11989..>12400
                     /locus_tag="ACFOCN_000915"
     CDS             11989..>12400
                     /locus_tag="ACFOCN_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HFC6970087.1"
                     /translation="MPEQNRILCRELSLLAFNRRVLAQAEDKNVPLLERLRFLCIVSS
                     NLDEFFEVRMAWLKRENKLHPRRRLDNGKMPSETIADVTEAARSLIRHQYDLFNNVLQ
                     PELARESIHFYRRRNWTGTQKKWIEDYFDRELLPI"
BASE COUNT         3175 a         3278 c         2996 g         2951 t
ORIGIN      
        1 aagcagcctg cacattgaaa atgccgccca agcaaacctt cagtttgcca gcctcgtcct
       61 agccctctcc cacggggaga ggggattggg gtgcaggctg cctttaaggt tcaggcaaat
      121 tttaacttcg ttgataccgc gctttagctt cgcagaagct gcactttcag acgacctttt
      181 ggaacaccac aggtacacgc atttaaggaa tgccgtctga aatgcctgcc tcaataacgc
      241 atcatgttgc cgtcaatctc ggccgcccat gcatcgatgc cgccctgaag gttgtacagg
      301 ttttcaaaac ccgcgtccgc caaatacatc gccgtatgca ggctgcggat accgtggtgg
      361 caatacacca caagcggcac atcatccggc agctcgttct gccgcagcgg aatcagattc
      421 atcgggatat gcagcgcatt tggcagcgaa caaaccgccg tttcttcatc cgtacgcacg
      481 tccaacaaac aaaacatccg cccttcgtcc atccacgcct tcaattccgc cgacccaagt
      541 tgcacaatat ccatcgcacc ccccaaaaaa aaaccaagca aaatgccgtc tgaagcccca
      601 aacccgcttt cagacggcat cgcaatccga acatcaaaac tgaaaaccgc caaacggatc
      661 ggcatcctta tcatccaaat gcgccaccaa ggtatcgaac agcaccttct cttcaaacac
      721 atcgcccttg cgcgtaatca aaagcgcacg ctgaacaggc ttgcggccta cgataaccac
      781 catgcgtccg ccatctttca actgttcttt caacacttca ggcacaaggt ttaccgcacc
      841 gccgacataa accgcatcaa acggcgcacc tgcggaaagt tcggtcaacc cgttgttttg
      901 cacataatcg atattgtcca aacccaagcc gtccaacacc gctttggcgc ggttttgctg
      961 ttcggcatcg atgtcgtccg acaccacacg accagccaat tttgccaaca gcgcggtcgc
     1021 atagcccgaa cccgtgccga tttccaaaac cgtatcgttt ttcgtcagct tcaagccctg
     1081 cgccagccgc gccacgactt tcggctcgag catcttatga ccgttggcaa gcggcagcgc
     1141 catatccgca tacgccaaac cctgcaagtc ctcatcgaca aaaagctcgc gcggaatctc
     1201 cgccaaagcg tccaaaacgt caaaatccaa tacatcccaa ggacggattt gctgttcgac
     1261 catattgaac cgcgcttttt caaaatccat ttagtgctcc gtcaaataat tgttccaaca
     1321 atagcaggca ttataaaacc acactcccgc cgcgccaact tcggcacgcg ccgcccgccc
     1381 ctttccctca ctcaaaccgc ctgacgcgaa gcctcaaacc gcttctccaa aatcttcgcc
     1441 agctcgccca aatacaaagc atctgtctca tcaaactgcg ccaaatgttc gctgtccgcg
     1501 tccaacacgc cgatacagcg gccgtctgaa aacagcggca cgacaatctc cgaacgcgac
     1561 aaagacgaac aggcaatatg gtcgggatgc gcgtccacat ccccgacgac caccgtcccg
     1621 cccttcgccc aagcctgacc gcacaccccg cgaccgaacg gaatccgcgt acacgccaaa
     1681 ggcccctgaa acggtgccaa aaccaattcg tccgaacgcg tatcgaccaa ataaaaaccc
     1741 acccaaaacc aaccgaacgc ctccttcaaa accgccgccg tgttcgccaa attcgccacc
     1801 caatccgtct cgtccgccac cacagactca atctgcggca acacctcccg ataaagcgcg
     1861 gccttgtccg aagccgaaaa atgaagcgcg tgcatcacat ctcctatagt tgcatacata
     1921 tcaggcggcc attataaaac aacctgcccg aaacaacatt ccaaaccgcc cccgcagccg
     1981 cccgccccaa gttgcgaacc cgccgcatat ccactaaact tcacattgca acgcgccaca
     2041 cgcggcagac agaaaaaaca cgacacggag caaaaaagat gtatcaccaa atcggaatgt
     2101 gggatcaaaa atgggtcatc ggcaactgga aaatgaacgg ccggctccag aacaacaatt
     2161 cgctcatgca ccgcttccgc atcctcccca ccgccgaacg cgtcctcatc ggactcgccg
     2221 ccccgaccgt ttacctgctg caactgcaca acgccatgca aatcgtctta aacaaccgca
     2281 tcctcacctg cgcccaagac gtgagccgct tccccgacaa cggcgcgtac accggcgaag
     2341 tgtccgccga aatgctcgcc gacaccggca cagacatcgt cctcatcgga cactccgaac
     2401 gcagccttta tttcggcgaa aaaaacgaaa tccaacgccg caaaatggaa aacgtcctca
     2461 acgtcggact catcccgtta ttgtgcgtcg gcgaaagcct cgaagagcgc gaagccggca
     2521 aagaacacga agtcatcgcc catcagcttt ccatcctgca agggctggat accaaaaaca
     2581 tcaccgtcgc ctacgaaccc gtctgggcga tcggcaccgg caaagtcgcc accgtcgaac
     2641 agattgccga tatgcacgca ttcatctaca aagaaatctt gtctttgtgc ggaagcgatg
     2701 ttaaaatccg cgtcctttac ggcggaagtg tgaaagcgga caacgcggcc gacatcttcg
     2761 cagtacctta tgtggacggc gcactcgtcg gcggcgcgtc attgtcgtac gactccttta
     2821 ccgccatcat cagtgccgca caaaatgcgt agaaaaatat ggaagccttc aaaaccctaa
     2881 tttggattgt taatataatt tccgctttgg ccgtcatcgt gttagtattg ctccaacacg
     2941 gcaaaggcgc ggatgccggc gcgaccttcg gatcgggaag cggcagcgcg caaggcgtat
     3001 tcggctctgc cggcaacgct aacttcctca gccgttcgac cgccgttgca gcaacatttt
     3061 tctttgcaac ctgcatggct atggtgtata ttcacaccca cacgacaaaa tacggtttgg
     3121 acttcagcaa cgtacaacaa actcagcaag cacccaaacc cataagcaat accgaacctt
     3181 ctgcccctgt tcctcagcag cagaaataac agtttttcaa atgccgacat ggtgaaattg
     3241 gtagacacgc tatcttgagg gggtagtggc cgtaggctgt gcgagttcaa atctcgctgt
     3301 cggcaccaac acacaaaacg cttagaaatt ctaagcgttt ttttcgttta atcctgtcta
     3361 atgccgtcaa ccaatcccaa tcaatacaag gatttcaggc tgattgttat cctgccgtcc
     3421 cccttcctga cagtgcaatc ccgtccaatc cgccctaatt gaactaacct gattttttac
     3481 agcatccgaa aataccgcga gaaaataccg taaaaataaa gctgaacgac caccaaagca
     3541 ggaatgccaa gcgggaaata gcttgcgggg aatactgacg caccgtaggg aatgaggggg
     3601 aaaccgtcca agatgcagag cggttttttt ttgggttttt ggaaaaaacc tatactatag
     3661 tggattaaat ttaaaccggt acggcgttgc ctcgccttgc cgtaccggtt taaatttaat
     3721 tcactataaa ataagaaaaa gataaaaaat tggtaacaaa tgcggtaaca aatggtaacg
     3781 aatcggtaac aacttttggg gttttccggt ttttcaccgt cttggcagtg ggagcgtagc
     3841 ggaatgaaaa gccaaaacgc acggaaccgc gcctattttg agcaggaatg gcggttaaac
     3901 cgcttggtta tatacgggga ataggaagac agcgaaacgc gctaaaaacg caatttgagc
     3961 cattaaaagc gattgattaa aaaataatca ggttagccgc cagtgtttca ggcggcataa
     4021 acggagaaat tgcagggtat aaaaaggcgg cttgccgtgt tgtctgtctc tggtataatt
     4081 ccaagtatca ctaatcaacg gctacacaat gcggatattc aaaaaccaat ggatagtgaa
     4141 atttgccaag aaacataaaa tcagtgattc cgagctgctg gaagcggtag agcgggcgga
     4201 taacgggctg atagacgcag atttaggcgg cggtgtgatt aagcagcgca tagcaaggca
     4261 aggacaaggc agaagcggcg gctatcgcag cctgatattg ttcaaacagg cagatagggc
     4321 atttttcgtt tacgcctttg ccaagaacga cagggaaaac atttcggata aagaactgga
     4381 cgtttaccga aaagccgccg catattatct gaaatacacg cgggcagagc tggcggcttt
     4441 gaaagaagac ggcattatca cggagataga atcatgaaat acaaaagcga ggcattagcc
     4501 gccattcatg aaatgatgga aggggcttac aacatcggcg caatcgacaa aaagactatg
     4561 cgcggctttg acaagtcctg cctgaccgaa atcaaaccgt tgagcggcgg agacatcaag
     4621 gcaatcaggg agaaggaggc actatcgcaa gccgctttcg ccatctatct caacgtggga
     4681 aaaaatcacg tttcggcttg ggagcggggc gttaaaaagc cgagcggcgc ggcgttgaag
     4741 ctgctgacca tcgtcaaaaa caagggtatc gaagccattg cgtagccgac ttggcaaacg
     4801 gcaaaatcag caagttcaca atagacacgc tgctgaatat gcctgccaaa acaggcaaga
     4861 ccgccgaact gaatatcagg gcgtagccgc ataaatgccc gaccgcatca aaccaagccg
     4921 aaacggcgac ggtgcagacg acatagcccg acagcaaggc acggcgcaga cgggcgcgaa
     4981 acccgaaaca tccccgaccg cgaggcacgg ggattttttg agcccgttgc agggggattg
     5041 gatttaagcg gcgcgggctt gaaagcaaaa cgggcggggc gcagaactgt ttaaatgccg
     5101 tctgaatctc aaacgatttc agacggcatt ttgaaacaac ggctcaaatt ctcgatcccc
     5161 ttcccttaac gccgacgttt tttattaacg cgccccttat ttctgacact ttgctcataa
     5221 accggcataa cggtcggcaa caaccgtttt agattttcta tacgggcatt gtttacagca
     5281 tcagcataag acaccgtact ctggaatacc gcctaaaccc tgcggatagt tttggatgtg
     5341 gtatcgacat tgtcggcaga cttgtctaac tcgaccgttt tcaaataatc tttgacagat
     5401 gctgcattca gtgtcgcgga atccgcgtat tttgaacaaa aggtcgggct actttatcac
     5461 aatagcagaa agatggaaaa cggcggggat tggtgaaagg tcgtctgaaa tgatattcag
     5521 acgaccttga acggctgtgt tttaaatatg gtatttattc atttgtttca ccatcaggca
     5581 gtccaaacca ccttaaggga atcgtgttaa attggtaatg gcagttaaca ctgataatat
     5641 aatctaaaac atctttatat tccggctttg taaaccaatc attcaaaaca tagacatatt
     5701 caacccgcca acctaaagag tgaaccaatt ttgtatattg ttttctctta aaatcgcaag
     5761 tttgtaattt ctcatctact gaaccgggag tttgttggaa tttgatctca ataataaata
     5821 aggtatcacg gatgatgata aataagccat tgtcgggtag taatctttta gacagatggt
     5881 ctttccaatt aatattgtat cccggtcttt tcaaaaatcg gtaaaactca tattttttaa
     5941 aacaataagc cttcaattct ccattgaacc aaacttcata acccgcatta tcatatgttt
     6001 ttcttaagtc gtacccggga atttcttcaa acaacgttcg taagtctgta cgttcttcga
     6061 atctgagtcc tgtttgtgtc cttgcaccac cgattccgcc aataatcatt tttctaacct
     6121 tttttttgct aattcaaaaa aatcttcttc cagttcgcaa ccacaaaatt tccgaccatg
     6181 ttttaaggcg gcaacgcctg ttgtgccgct gcccatgaaa gggtcaaaaa ttaaatctcc
     6241 gatgtttgaa gctgagagta tgcagcgttc aagcaagggg agtggttttt gtgtcggatg
     6301 tttgccgaat gttttttcgg ctttgtttgg aggaggaaat gtccaaacac atttcatctg
     6361 tttgccatca ttttgtgctt tcatcatttc ataatgaaac gtgtgtttgg cttttttatt
     6421 tttctttgcc cataagattg tttctgtcga atgggtaaaa aaacggcagg acaaattagg
     6481 gggaggattg ggtttttccc aagtaatatt gttcaaaata tggtatccga tagtttgcat
     6541 caggtagccg attaaataaa tattatggaa tgtgccgcaa acccaaattg tgccgtttgg
     6601 ttttaataag gcgtaacaca gtcggagcca ttcttcgtag aattccaaat ctgccgccat
     6661 tcctttggat ttatcccagt tgcccttatt gacggaaacc atttgtccgt tttgacaact
     6721 gaagccgtca ttggaaagaa agtaaggcgg gtctgagaaa atcatatcaa aacagccgtt
     6781 tggatatttt tccaatatct tccgcatgac gttaagggaa ttttcgttgt agaggacaag
     6841 gtcgtctgaa acgatttttt tcaaacgact ttgataaatg gcgtcttctt cagccggttt
     6901 gtcaaaatca atcataaatt gccaataatt ctccgacttt tttacggctg ctgccttttg
     6961 cggcaatatt gcgttgtact tcaattgttt tcagaatggc aaaagaataa atatcccttg
     7021 tgaattcagt atcatgattt gaaatcaaaa cgccttggga atcgggcgca atttgttggg
     7081 ctgactgggc aagacggatt tgattgtcta aattgaaact ttctttggca taagtggtaa
     7141 atgaagcggt tgggcttaaa ggcgcgtaag ggggatcgca ataaaccgta tcggtattgt
     7201 ctgtctgaga tagaatcatt tgaaaatctc cgcacattaa ttcaactctg tcagatttct
     7261 gaatgaaacc ttccatttct tgttggggaa agtacggcga tttgtagcgt ccgaacggca
     7321 cattgaatac ccctttgctg ttgtaacggc ataaaccgtt aaaagcatga cggttcaaat
     7381 aaataaatag tgctgagcgt tcgtgcagat ttttgctgaa gttgaattgt tcccgcaatt
     7441 catagaatct tgaatcgcta ttgttttcgg aaataaagaa agagcgggcg tagtcgatga
     7501 atccggattt ttcttctttt aggatacgga ataagccgat taagtcagcg ttaatatcat
     7561 tgagcagata atgttcgaag tccaatgcaa gagacaaagc ggcagaaccg caaaagggtt
     7621 caatcaggcg ttttcgtgta ggagtgggta gattatgttc gataaagggg acaagtttat
     7681 gtttgccgcc tgcccatttt aggaagggtt ttgaagccat taggatgcag agtataagcg
     7741 tggttgattg gcttggaatt gtgccaaaac atcgtgagga atacaacgga tttatatttt
     7801 ggggacgtgt gtagagtgag tctaaatcca atagaacctt tccattccaa tatgttattg
     7861 gacttatcaa ctccatctgc cttaaaaagg ccgtctgaaa ccctgtttcc cagttttcag
     7921 acggccttta tccgtatggc taaaccttaa gagcggttta gacgacgata ttcaccaagc
     7981 gtccgggaac gacgatgatt ttcttcgccg gtttgccttc catgaatttc accgcgcctt
     8041 cggtggcgag tgcggcggct tcgaggtcgg ctttggatgc gtcggcggca acagtgattt
     8101 tgccgcgcag tttgccgttg acttgaacca tcacttcgat ttcggatttg accaaggcgg
     8161 cttcgtcgac tgtcggccag cctgcttccc acagtttcgc gccgttcaat tcgctccaca
     8221 gggtttcgca gatgtgcggc acgatgggcc acaacaggcg tacggcggtt tccaatactt
     8281 cttgggcgac ggcgcgtcct tgttcgccgc cggtgtcggt tttgtcgtat tggttgagca
     8341 attccatcac ggcggcgatg gcggtgttga actgctggcg gcggccgtag tcgtcgctga
     8401 ctttggcagt ggtcgcgtgc agtttgtggc gcaggtcttt gagttcttta gacaaaccgt
     8461 cttggctgcc tgcgaacgct ttgaccgctt cgccttgctt caagtattcg taaacggtac
     8521 gccacaggcg gcgcaggaag cggtgtgcgc cttcgacgcc gctgtcgctc cattcgaggg
     8581 actgttcggg cggtgcggcg aacatcataa acaggcgggc ggtgtccgcg ccgtaggcgt
     8641 taatcagttc ttgcggatcg acgccgttgt ttttggactt ggacattttt tccgtgccgc
     8701 tgatgacgac gggcagcccg tcggctttga ggacggcgga aatggggcgg cctttgtcgt
     8761 cgaacgtcag ctcgacatcg gcggggttga tccaatcttt gccgcctttg tcgttttcgc
     8821 ggtagtaggt ttcgcaaacg accatgcctt gcgtcagcag gcgttcaaac ggttcgtcaa
     8881 cattgactag accttcgtcg cgcatcagtt tggtgaagaa acgcgcgtac aagaggtgca
     8941 aaatcgcgtg ttcgatgccg ccgatgtatt ggtcgaccgc gccccagtat ttcgcggcgg
     9001 caggatcgac catgccgtct gaaaattttg gcgacatata gcggaagaaa taccagctcg
     9061 attccatgaa ggtgtccatg gtgtcggttt cgcgttttgc cgcgccgccg cagcatgggc
     9121 aggcagtttc gtaaaactcg ggcatttttg ccagcggcga acccatgccg tcgggtacga
     9181 cgttttcagg caaaacgacc ggcaattggt cggcagggac gggtacgtcg ccgcattgtt
     9241 cgcaatggac gatgggaatc gggcagcccc agtagcgttg gcgcgaaatg ccccagtcgc
     9301 gcaggcggta ttgggttttc ggttcgcccg cgccttggct ttgcagcttg gcggcaacgg
     9361 catcgaatgc cgtctgaaaa tccaagccgt ccaagtcgcc gctgttgacc aatacgccgt
     9421 tttctttgtc ggcataccat tcttgccatc ggtttgcgtc gaatgcgttg tcgccgacgg
     9481 caatgacttg ttttttaggc agattgtatt tggcggcgaa ctcaaaatcg cgttcgtcgt
     9541 gcgccggaac cgccatcact gcgccgtcgc cgtagcccca caatacatag ttggcaatcc
     9601 acacttccag cttgtcgccg ttgagcgggt tgacgacgta gcgaccggtc ggcacgcctt
     9661 ttttctccat cgtcgccata tcggcttcgg caaccgaacc ggctttgcat tcggcaataa
     9721 atgcctgcaa ttcgggtttg tcggcggctg cggcggctgc cagcggatgc tcggcggcaa
     9781 cggcaacata agtcgcaccc atcagcgtgt cggggcgggt ggtataaact tgcagcaatt
     9841 tcgcgtaatc gccttccaag ccttgtttgc tgtcgtctga aacggcgaag cgcacggtca
     9901 taccgcgcga tttgccgatc cagttgcgct gcatggtttt gacttgttcc ggccagtgtt
     9961 ccagcttgtc caagtcgttg agcagctctt cggcgtaatc cgtgattttg aagtaataca
    10021 tcgggatttc gcgtttttcg atcaacgcgc ccgaacgcca gccgcgtccg tcgatgactt
    10081 gctcgttggc aaggacggtt tggtcgaccg ggtcccagtt caccgtgccg tttttgcgat
    10141 agacgatgcc tttttcaaac agcttggtaa acagccattg ttcccagcgg tagtattcgg
    10201 gtttgcaggt tgcggtttcg cgcgcccagt caatcgcaaa acccaggctt ttgagctggg
    10261 ttttcatgta ttcgatgtta tcgtacgtcc aagcggcagg ggcgacgttg tttttcatcg
    10321 ccgcgttttc cgccggcatg ccgaacgcgt cccaacccat aggctgcatg acgttgaagc
    10381 cgtttaaaag tttgaagcgg ctcaatacat cgccgatggt gtagttgcgc acatgcccca
    10441 tgtgcagctt gccgctggga taggggaaca tggagaggca ataatatttg ggtttggaag
    10501 cgtcttcgga gacgttgaaa atacgggcgt cgtcccattt tttctgcgcc gcaggctcga
    10561 tggcggcggg ttggtaatgt tcttgcatgg tcattctgtt tttcgcttga aaacgttagg
    10621 aatttaaagg aggaattata acaggttgcc gatgtcggcg aatcggcaaa ttgccggcag
    10681 gatgcgtaaa ttcgcacgcg catcattccg tatgccgtac aaatacaccg cgtttactga
    10741 tacgcacgtt ttttatgcta atattacaaa ccaaaatcaa atgtttaaaa ctctcctgat
    10801 gcggctcttc cgaacaaaag gcagacgggc atcgggtaaa agaggattct gcatatgaaa
    10861 atcaaacaaa tcgtcaaacc gggcttggca gtattggcgg cgggcgttct gtctgcctgc
    10921 gcaaccaaaa gcaacgtcaa agccgacgga acgaccgaca atccggtttt cccgaaaccc
    10981 tattccgtaa cgctcgacaa caatcgcggt acattcccga cctatgacga attggacttg
    11041 atgcgtcccg gtctgaccaa agacgacatc tacaaaatcc tgggtcgtcc gcattacgac
    11101 gaaggtatgt acggcgtgcg cgaatgggat tatctgttcc acttccacac cccgggcgta
    11161 ggcatcgacc ctgaaaacac ttccggcgta gaaggcatta ccacctgtca atacaaaatt
    11221 attttcgata aagacaaatt tgcccgcagc ttctactgga accccgtctt cccgaaagat
    11281 gccgcctgtc cgccgcccgc acccaaagcc gagccgcaag tcatcatccg cgaaatcgtg
    11341 ccggcaaaac cgaaacgtat ccgccaataa tccgacatgc cgttccgcct gtttttaggg
    11401 atattatgcg gcctgtcaat ggttgccccc gtatatgcac aggggcaacc ggatgcggtc
    11461 aacgcttata ttcaaaagaa aaaagtcatc gtaaacacat ccaaagcgga actctgtttt
    11521 gccgatgaca ggcagtgcca ccccgtcctc atcggtgttg ccacgcccaa ggggacgttc
    11581 gggctgacgc tgaacagtac cgacaagcct ggatacggcg gcgaagtcat cggtttcaag
    11641 caggagggtg attttctttt cgccctgcac cgcgtttgga atcagatacc gtcggaaagg
    11701 cggaacgaac gcatcgcctc cccgtccgtg tccgacagga ttatgaccaa cggctgcatc
    11761 aacgtcagcg atgcggtgta cgaaaaactg cgtcattatt ttgtgttgga agtgatttga
    11821 aacagacgga taccgcacgc gccggtatct gttttcacat tgccccgatg cctgaaacag
    11881 actgtccgcc acgtcatgcc gtctgaaacc ggcgcagatg ccgccaagcc ttcagacggc
    11941 attgcctgcc cgctccgacc gaacaacaac catctttggg agaaccttat gcccgaacaa
    12001 aaccgcatcc tctgccgcga actaagcctg ctggcattca accgccgcgt gttggcacag
    12061 gcggaagaca aaaacgtccc ccttttggaa cgcctgcgct tcctgtgcat cgtgtcgtcc
    12121 aatcttgacg agtttttcga agtccgcatg gcgtggctca agcgtgaaaa caagctgcac
    12181 ccccggcgca ggctggacaa cggcaaaatg ccgtctgaaa ccatcgccga cgttaccgaa
    12241 gcggcgcgct ccctgatacg gcatcagtac gacctgttca acaacgtcct tcagcccgag
    12301 ttggcgcggg aaagcatcca tttttaccgc cgccgcaact ggacgggcac gcagaaaaaa
    12361 tggatcgaag actatttcga ccgcgaactg ctgccgatcc
//
LOCUS       DAXIFD010000047        12249 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.047, whole genome shotgun sequence.
ACCESSION   DAXIFD010000047 DAXIFD010000000
VERSION     DAXIFD010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12249
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.047"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            23..259
                     /locus_tag="ACFOCN_000916"
     CDS             23..259
                     /locus_tag="ACFOCN_000916"
                     /inference="COORDINATES: protein motif:HMM:NF012675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HFC6970088.1"
                     /translation="MWIFSACSRGADPIGRPFAFVNILENLEIRSTLPLIANRPTFPQ
                     LWVNGELIGGSDIILQMYQSGELKPLIEEHSPKV"
     gene            427..2202
                     /gene="ggt"
                     /locus_tag="ACFOCN_000917"
     CDS             427..2202
                     /gene="ggt"
                     /locus_tag="ACFOCN_000917"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036374 - glutathione hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HFC6970089.1"
                     /translation="MAKTYLLTALIMSMTISGCQVIHANQGKVNTHSAVITGADAHTP
                     EHATGLTEQKQVIASDFMVASANPLATQAGYDILKQGGSAADAMVAVQTTLSLVEPQS
                     SGLGGGAFVLYWDNTAKTLTTFDGRETAPMRATPELFLDKDGQPLKFMEAVVGGRSVG
                     TPAIPKLMETIHQRYGVLPWGKLFDTPIRLAKQGFEVSPRLAISVEQNQQHLARYPKT
                     AAYFLPNGVPLQAGSLLKNLEFADSVQALAAQGAKALHTGKYAQNIVSVVQNAKDNPG
                     QLSLQDLSDYQVVERPPVCVTYRIYEVCGMGAPSSGGIAVGQILGILNEFSPNQVGYD
                     AEGLRLLGDASRLAFADRDVYLGDPDFVPVPIRQLISKDYLKHRSRLLEQSDKALPSV
                     SAGDFIHEWVSSQAIELPSTSHISIVDKAGNVLSMTTSIENAFGSTLMANGYLLNNEL
                     TDFSFEPIKQGKQVANRVEPGKRPRSSMAPTIVFKAGKPYMAIGSPGGSRIIGYVAKT
                     IVAHSDWNMDIQDAISAPNLLNRFGSYELETGTTALQWQQALNDLGYKTDVRELNSGV
                     QAIIIEPSRLVGGADPRREGRVMGD"
     gene            2265..2528
                     /locus_tag="ACFOCN_000918"
     CDS             2265..2528
                     /locus_tag="ACFOCN_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970090.1"
                     /translation="MSNQTKIQAIKQASEQIFAICETPNTALQAIHLILRHGGAGELS
                     WQVVYQRVMADKDVVGAGYLIDFAQTAENLPFDALPLGSLVLT"
     gene            2683..3933
                     /gene="glyA"
                     /locus_tag="ACFOCN_000919"
     CDS             2683..3933
                     /gene="glyA"
                     /locus_tag="ACFOCN_000919"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HFC6970091.1"
                     /translation="MFSKSVTLAQYDPDLAAAIAQEDQRQQDHVELIASENYVSCAVM
                     EAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKKLFGAQYANVQPHSGSQAN
                     QAVYASVLKPGDTILGMSLAHGGHLTHGASVNISGKLYNAVTYGLDENEVLDYAEVER
                     LALEHKPKMIVAGASAYALQIDWAKFREIADKVGAYLFVDMAHYAGLIAGGEYPNPVP
                     FCDFVTTTTHKTLRGPRGGVILCRDNTHEKALNSSIFPSLQGGPLMHVIAAKAVAFKE
                     ALQPEFKQYAKQVKINAAAMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAA
                     LGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNEADARVLANLVADVLSNPE
                     DEANLENVRKQITALCDKYPVYGA"
     gene            4024..4668
                     /locus_tag="ACFOCN_000920"
     CDS             4024..4668
                     /locus_tag="ACFOCN_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6970092.1"
                     /translation="MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVT
                     PLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDS
                     KIFRREYLDKTHRFYEKHGGKTIIIARFMPIVRTFAPFVAGMGKMHYAKFIRYNIIGG
                     LLWVILFSYAGYFFANFPVVKNNLGLVMGGIIIVSVLPGAVEIARAKLAVKSKR"
     gene            4687..6597
                     /locus_tag="ACFOCN_000921"
     CDS             4687..6597
                     /locus_tag="ACFOCN_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6970093.1"
                     /translation="MNILSVENASFAIGHVALLDKTSFQLDSGEKVGLIGRNGAGKSS
                     FLKILAGVQKLDDGQIIIQNNLKIVYVPQESFFDKDATVFDTVAEGLGEIRDLLRRYH
                     RVGHELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGG
                     QKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDN
                     IATRIVELDRGILRSYPGSFSKYSEKKVQELAVEAEHNRLFDKFHAQEEAWIRKGIEA
                     RRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHASFAYGDKVI
                     MDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELNPTYGRIRIGSKQEVAYFDQFRS
                     TLNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFHPARAQSPVSSLSGGERNRLL
                     LAKLFTRPANILILDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI
                     IFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKE
                     QRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERW
                     ELLETKQNGNAV"
     gene            6618..6983
                     /locus_tag="ACFOCN_000922"
     CDS             6618..6983
                     /locus_tag="ACFOCN_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970094.1"
                     /translation="MFKRPEEIIVLILAVLWIAGTYFLAALFGADAYTVLKITALTLL
                     WSAASFLLWQKNLSRHIWPLLLGCLTACWWPYLNQSVAPGSLPWYASWTFKTILALIP
                     VTAGYLFKWKQYRQRKTKP"
     gene            7094..8569
                     /gene="trpE"
                     /locus_tag="ACFOCN_000923"
     CDS             7094..8569
                     /gene="trpE"
                     /locus_tag="ACFOCN_000923"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HFC6970095.1"
                     /translation="MISKQEYQAQAAQGYNRIPLVQELLADLDTPLSLYLKLANRPYT
                     YLLESVVGGERFGRYSFIGLPCSHYLKASGKHVDVYQNGEIVEQHDGNPLPFIEAFHN
                     RFKTPEIPSLPRFTGGLVGYFGYETIYNFEHFAHRLKNTTKADPLGTPDILLMLSQEL
                     AVVDNLSGKIYLIVYADPSQPDGYERARERLEDIRTQLRQSCAIPLSLGSKHTEAVSE
                     FGEEPFKACVNKIKDYIFAGDCMQVVPSQRMSMEFTDSSLALYRALRTLNPSPYLFYY
                     DFGDFHIVGSSPEILVRRERDDVIVRPIAGTRLRGKTPAEDLANEQDLLSDAKEIAEH
                     VMLIDLGRNDVGRISKTGEVKVTDKMVIEKYSHVMHIVSNVEGRLKDGMTNMDILAAT
                     FPAGTLSGAPKVRAMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNTL
                     YVQSGAGVVADSDPASEWQETQNKARAVIHAAQMVQEGLDK"
     gene            8566..9111
                     /locus_tag="ACFOCN_000924"
     CDS             8566..9111
                     /locus_tag="ACFOCN_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HFC6970096.1"
                     /translation="MTYEKLYELRQTLRPTTKDGLYTDNEKSREILTVRWSGNTENPK
                     NFSAVAIGINPSKANDERSDKTLTQLARFLDMYGFTNFKMLNIFSSYSTQQTGIRANT
                     QTDFSKFKGCLEDADMIILAWGTDRGAYKDEKNRILEFLKAEKFMEKVFCISETGNSS
                     DTRHPSRISYSYQLVQFEESA"
     gene            9108..10244
                     /locus_tag="ACFOCN_000925"
     CDS             9108..10244
                     /locus_tag="ACFOCN_000925"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HFC6970097.1"
                     /translation="MKNISLSPPAMLGILGGGQLGRMFTVAAKTMGYKVTVLDPDPDA
                     PAAEFADCHLCAPFNDQAALDELAKCAAVTTEFENVNADAMRFLAKHTNVSPGSDCVA
                     IAQNRIQEKAWIRKAGLQTAPYQAICKAEDITEESIQFLPGILKTATLGYDGKGQIRV
                     KTVDELKAAFAEHRGVDCVLEKMVDLRGEISVIVCRLNNDNVQTFDPAENIHENGILA
                     YSIVPARLSADIQQQARQMAQRLADELNYVGVLAVEMFVVGDTHELVVNEIAPRPHNS
                     GHHTVDACAADQFQQQVRLMCNLPPADTKLLSSCCMANILGDVWQEDGGEPDWFPLQS
                     RPDAHLHLYGKKTAHKGRKMGHFTVLTTDSDTAFQEAKKLHQSL"
     gene            10291..10773
                     /locus_tag="ACFOCN_000926"
     CDS             10291..10773
                     /locus_tag="ACFOCN_000926"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6970098.1"
                     /translation="MNLLTLLRPATVQDCKDIFKVHLHSVQYTCILSYNEHALKVWEG
                     LLNTESYLPTISDPDKALWVAEYKGNIQGFFQIDCQEAQLDALYVHPLFHNLGLGTAL
                     LHQAETIAHKSGLSFLKLYASLNSVPFYLLNRYESLGSAVLQLDPSIKIKCELMRKHL
                     "
     gene            10879..11934
                     /locus_tag="ACFOCN_000927"
     CDS             10879..11934
                     /locus_tag="ACFOCN_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6970099.1"
                     /translation="MKTYAPALYTAALLTACSPAADSNHPSGQNAPANTESDGKNITL
                     LNASYDVARDFYKEYNPLFIKTYQSEHPGTSVSIQQSHGGSSKQALSVANGLQADVVT
                     MNQSSDIDLLEKKGLVEKGWQQALPDHAAPYTSTMVFLVRKNNPKQIRDWNDLAKDGV
                     NIVIANPKTSGNGRYAFLGAYGYGLKTTNGNEQEAQKLVASILKNTPVFENGGRAATT
                     TFTQRNIGDVLITFENEANYVSKKLTQGQFEIVYPSYTISAESPVAVVNSVVAKKGTQ
                     KTARAYLEYLWSEPAQELAASLYLRPRNPEVLARHKADFPDLDSFSPEEKFGGWDNIM
                     KTYFADGGIFDRLTAQK"
     gene            11931..12143
                     /locus_tag="ACFOCN_000928"
     CDS             11931..12143
                     /locus_tag="ACFOCN_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970100.1"
                     /translation="MTAMPSEPPFRRHSTHQNRKTAPKIIITRHNGKPDTKPNTAAKM
                     PSEAVGATILIWGALQGRITFLNHPF"
BASE COUNT         3374 a         3349 c         2789 g         2737 t
ORIGIN      
        1 aaggcacgcc ccagtttccc caatgtggat tttcagcgcg tgcagtagag gtgctgaccc
       61 aattggcaga ccctttgctt ttgttaatat cctagaaaac ctagaaattc gcagtactct
      121 accactcatc gccaatcggc caacctttcc acagctttgg gttaatggtg agttaatcgg
      181 tggtagtgat attatcctac aaatgtacca atcaggtgag ctaaaaccac tcattgaaga
      241 gcatagccca aaggtctgat tacttaatat cttaaaataa atatcaaaaa agactgctga
      301 tgacattagc ggtctttttt tgatggtcaa gattgatagt ttggattgaa ttatttagcc
      361 atattaaata caataatcag catgccttgt atgaatcatc aatcaaactc aggcgaagga
      421 gtgcttgtgg ctaaaacata tttattgact gcattgataa tgtctatgac aatctctgga
      481 tgtcaagtca tccatgccaa tcaaggtaag gttaatactc attctgctgt catcacaggt
      541 gcagacgctc acacgcctga acatgcaacg ggactgaccg aacaaaagca ggtgattgca
      601 agtgatttta tggtagcgtc agccaatcca ttagcaacac aagctggcta tgatatctta
      661 aagcaaggcg gtagcgctgc agatgcgatg gtggcggtgc agacgacact aagcttggta
      721 gagccacagt cgtcaggctt gggcggtggt gcatttgtgt tgtattggga taataccgcc
      781 aaaacattga ccacatttga tgggcgtgag acggcaccga tgcgtgcgac gccggaatta
      841 tttttggata aagatggtca accattgaaa tttatggaag cggtggtcgg tggtcgctcg
      901 gtgggtacgc ctgctatccc taaactgatg gagacgatac atcagcgata cggtgtattg
      961 ccttggggaa aattatttga tacgccgatc cgcttggcaa aacaaggctt tgaggtgtcg
     1021 ccaaggcttg ccatctcggt tgagcaaaat cagcagcatt tggcacgcta tccaaaaaca
     1081 gccgcttatt ttttgccgaa tggtgtgccg ctacaagcag gcagcttgct gaaaaattta
     1141 gaatttgctg acagtgttca ggcgttagca gctcaaggtg caaaagctct gcatactggt
     1201 aaatatgccc aaaatatcgt ttcagttgtc caaaatgcta aggataaccc cggtcaatta
     1261 tccttacaag atttatctga ttatcaagtg gtggaacgcc cgcctgtttg tgtgacttat
     1321 cgtatttatg aagtatgcgg tatgggtgca ccaagctcag gtgggattgc tgtgggtcag
     1381 attttgggga ttttaaatga attttcaccc aatcaggtgg ggtatgatgc tgaaggttta
     1441 cgtctcttgg gcgacgcttc taggcttgcg tttgcggatc gtgatgtata tttgggcgac
     1501 cctgattttg taccagtacc cattcgccag ttgatttcta aagactacct aaaacatcgc
     1561 agccggctgc ttgagcagtc ggataaggca ttgcctagcg tatctgcagg cgattttatt
     1621 catgagtggg tgtcctcaca agcgattgag ttaccttcta ccagtcatat atcaattgtg
     1681 gataaggcgg gcaatgtgct atcaatgacg acttccattg aaaatgcgtt tggctcaact
     1741 ttgatggcaa atggctacct gctgaataat gagctgacag actttagttt tgagccaata
     1801 aagcagggca aacaggtcgc caatcgtgtc gagcccggca agagaccacg ctcctcaatg
     1861 gcaccaacca tcgtatttaa agcaggcaag ccttatatgg caatcggctc cccaggtggt
     1921 agccgtatca ttggctatgt cgctaagacg attgtggcac atagtgactg gaatatggat
     1981 atccaagatg ccatcagtgc acccaattta ttaaatcgct ttggtagcta tgaactagaa
     2041 acgggtacaa ccgccctcca gtggcaacaa gcattaaatg atttgggcta taagactgac
     2101 gtgcgtgagc taaattcagg tgttcaagcc attattatcg agccaagcag gctggttggt
     2161 ggtgccgatc cacgccgaga aggtcgagtg atgggtgatt agaggtgaag cttgtatttt
     2221 gtgaatttga ccgcattaag ttaatattaa aataggggga aattgtgagt aatcaaacaa
     2281 aaatacaagc catcaagcaa gcttctgagc agatcttcgc aatttgtgag acgccaaaca
     2341 cagcattaca agccattcat ctgattttaa gacatggtgg ggcaggagag ttgtcttggc
     2401 aagtggtgta tcagcgggtt atggctgata aagatgtggt tggtgctggt tatttgattg
     2461 attttgcaca aactgccgaa aatttaccat ttgatgcatt gcctttgggt agccttgtac
     2521 taacataaag gtaatgagac gctaaaaacc agcatgttaa ataaattacc tgataatgcc
     2581 aaagaaaatt tacgcattat ggactatctg ccttaggttt tgaagtattt ttttatacaa
     2641 aaaacactca tgataccctg attacacaaa ggagccgaga acatgttttc aaaaagcgtt
     2701 accctcgcac aatatgaccc cgatttggca gcagccattg cccaagaaga ccaacgccag
     2761 caagaccacg tcgagctgat tgcctctgaa aactacgtca gctgcgccgt aatggaagcg
     2821 caaggttccc agctgaccaa caaatacgcc gaaggctacc ccggcaaacg ctactacggc
     2881 ggctgcgaat acgtcgatat tgtcgaacaa ttggcaatcg accgcgtcaa aaaactgttc
     2941 ggcgcgcaat acgccaacgt tcaaccgcac tccggctcgc aagccaacca agccgtgtac
     3001 gcttccgttt taaaaccggg cgacaccatt ttgggtatgt ctttggcgca cggcggccac
     3061 ctgacccacg gcgcgagcgt taatatttcc ggcaaactct acaatgccgt tacttatggt
     3121 ttggatgaaa acgaagtgct cgattatgcc gaagtggaac gcttggctct cgaacacaaa
     3181 cccaaaatga ttgtggcggg tgcgtctgcc tacgcgttgc aaatcgactg ggcaaaattc
     3241 cgcgaaatcg ccgataaagt cggcgcatac ctctttgtcg acatggcgca ctacgccgga
     3301 ctgattgccg gtggcgaata tcccaacccc gtgccattct gcgacttcgt gaccaccacc
     3361 acccacaaaa ccctacgcgg ccctcgcggc ggcgtgattc tgtgccgcga caatacccac
     3421 gaaaaagcac tgaactcttc catcttccca agcctgcaag gcggtccgct gatgcacgtc
     3481 atcgccgcca aagccgtagc gtttaaagaa gcgttgcaac ccgagttcaa acaatacgca
     3541 aaacaagtga aaatcaatgc tgccgccatg gcggaagaac tggtcaaacg cggtttgcgc
     3601 atcgtttccg gccgcaccga aagccacgtt ttcctcgtcg acctgcaacc gatgaaaatt
     3661 accggcaaag ccgccgaagc cgctttgggc aaagcgcaca tcaccgtcaa caaaaacgcc
     3721 attccgaacg atccggaaaa acccttcgtt acctccggca tccgcatcgg ctccgccgcc
     3781 atgaccacac gcggttttaa cgaagccgac gcacgcgtat tggcgaactt ggttgccgac
     3841 gtattgtcta accccgaaga cgaagcgaat ctggaaaacg tccgcaaaca gattaccgcc
     3901 ctctgcgaca aataccccgt ttacggcgcg taaacttttt taaaaacaaa tgccgtctga
     3961 aaatttcaga cggcattttt ccaatcggtt aaaatacgcg gtttgttttt ttaggaacgc
     4021 gccgtgcttg cctccgccat cgacttcatc ctccatatcg accaacacct gctcgcgctg
     4081 tcggcgcaat acggtgtgtg gatttatgcg attctgtttt tgattgtttt ttgcgaaacc
     4141 ggcctgattg ttacgccctt actgcccggc gattcgctgc tgtttgccgc cggcgggatt
     4201 gccgcgctgg gcggtatgga tattcatttg atggttgcat tattaagcct tgccgccata
     4261 ctcggcgacg cgctcaattt taccgtcggc aaatatttcg gcggcaggct gttcgccaac
     4321 cccgattcta aaatcttccg acgtgaatat ctcgataaaa cccaccgttt ttacgaaaaa
     4381 cacggcggca aaaccatcat cattgcccgt tttatgccca tcgtccgcac ctttgccccc
     4441 ttcgtcgccg gtatggggaa aatgcactat gccaaattta tccgctacaa catcatcggt
     4501 ggcttgttgt gggttatcct gttttcttac gcgggctatt tctttgccaa cttccccgtc
     4561 gtaaaaaaca atctgggctt ggtgatgggc ggcatcatta ttgtttccgt cctgccgggt
     4621 gcggttgaaa ttgcccgcgc caaacttgcg gtaaaatcca aacggtaact gttgagaatt
     4681 tgcatcatga atatattatc tgtagaaaac gcttcttttg ccatcggcca cgttgccttg
     4741 ctcgacaaaa cttcttttca actcgacagc ggcgaaaaag tcggcttgat cggacgcaac
     4801 ggcgcaggta agtcttcgtt tctgaaaatc ctcgccggcg tgcaaaagct cgacgacggg
     4861 cagattatca ttcaaaacaa cctcaaaatc gtttatgtac cgcaggaatc cttttttgat
     4921 aaggacgcaa ccgtatttga taccgttgcc gaaggtttgg gtgaaattcg cgatttattg
     4981 cgccgttacc accgcgtcgg ccatgagttg gaaaacggtt cgggtgaggc tttgttgaaa
     5041 gaactcaacg aattacaact tgaaatcgaa gcgaaggacg gctggaagct ggatgcggca
     5101 gtcaagcaga ctttggggga actcggtttg ccggaaaacg aaaaaatcgg caacctttcc
     5161 ggcggtcaga aaaagcgtgt cgccttggcg caggcttggg tgcagaagcc cgacgtattg
     5221 ctgctggacg aaccgaccaa ccatttggat atcgacgcga ttatttggct ggaaaatctg
     5281 ctcaaagcgt ttgaaggcag cttggttgtg attacccacg accgccgttt tttggacaat
     5341 atcgccacgc ggattgtcga actcgatcgc ggtattttgc gttcctatcc cggctcgttc
     5401 tccaaataca gcgaaaaaaa agtgcaggaa ttggcggttg aagcggaaca caaccgcctg
     5461 tttgacaaat tccacgcgca ggaagaagcg tggatacgca aaggcatcga agcgcgccgc
     5521 acccgcaacg aaggccgcgt gcgccgtttg gaagagctgc gccgccaacg cgccgaacgc
     5581 cgcaatgtgc agggacaggt caacttcaag ctcgacagcg gcgagaaaag cggcaaaatc
     5641 atcgccgaat tggaacatgc ctcgtttgcc tatggcgaca aagtcattat ggacaaattc
     5701 tccgcgattt tgcagcgcgg cgataaaatc ggtctaatcg gccccaacgg catcggcaaa
     5761 accacatttt taaaactgat tttaggcgaa ctcaacccga cttacggcag aatccgtatc
     5821 ggcagtaagc aggaagttgc ctatttcgac caattccgca gcacgttgaa cgaaaacgac
     5881 accgtgtttt acacgctcgg tcaaggcaac gattacgtcg aagtcggcgg caagaaaaaa
     5941 cacgtaatga gctatctgga agatttctta ttccatccag cccgcgcaca aagtcccgtt
     6001 tcatcgctct ccggcggcga acgcaaccgc cttttgctgg caaaactctt tacccgtcct
     6061 gctaatattt tgattttgga cgaaccgacc aacgacttgg atatcgatac ccaagagctg
     6121 cttgaagatt tgctgcgcga ttatcaaggc acggtattcc ttgtctcaca cgaccgtatg
     6181 ttcctcgata acgtgattac ccaaagcatt atttttgaag gaaatggaag gttaaaagaa
     6241 tatatcggcg gctatcagga ctacatcgac gcaaaatcac gcgaagcgaa gattcagacg
     6301 gaatccgcac ccaaaacagc cgatgccgaa ccggtgaaag aaaaacccaa agccaaccgc
     6361 acggtcaaac tgtcctacaa agaacagcgc gaactcgacg ccctgcccga cgaaatcgcc
     6421 gccttggaag ccgaacaggc agaaatcaac gcgcagcttt ccgatcccga aatcttcaaa
     6481 gattacgaaa aagccggcgc actgcaaagc cgcgccgaag aaatcgaaat gctgcttttg
     6541 gaaaagctgg aacgctggga gctgctggaa accaaacaga acggcaatgc cgtctgaaat
     6601 caaacaggaa gaaaaaaatg ttcaaacgac ctgaagaaat cattgtcctg atacttgccg
     6661 tcctctggat tgccggtacg tattttctcg ccgccctgtt tggagcggat gcttataccg
     6721 tgttaaaaat cactgccctt accctgcttt ggtctgccgc atcattcctc ctttggcaaa
     6781 aaaacctcag ccggcatatc tggccgctgc tgctcggctg cctgactgcc tgttggtggc
     6841 cgtatctgaa tcaatcggtc gcacccggtt ctttaccttg gtatgcatca tggacgttca
     6901 aaaccatctt agccctgatt cccgtaaccg caggttatct gtttaaatgg aaacaatacc
     6961 ggcagcgcaa aacaaagccg taagcccgtc cttttcagac ggcatctccg gtcagactgt
     7021 caacaattcc gataaaatgc tatactcgcg cccgttgccg cgccgtccga aaccgccctt
     7081 tgggaaagca gaaatgatca gcaaacaaga ataccaagcc caagccgctc aaggctacaa
     7141 ccgcatcccg ctcgtgcaag aactccttgc cgatttggat acgccgcttt ccctctatct
     7201 caaactcgcc aaccgcccct atacctacct gctcgaatcc gttgtcggtg gcgaacgttt
     7261 cggccgctat tcttttatcg gcctgccttg cagccactat ctcaaagcca gcggcaaaca
     7321 cgtcgatgtt tatcaaaacg gcgaaattgt cgagcaacac gacggcaacc ccctgccctt
     7381 tatcgaagcc ttccacaacc gcttcaaaac acccgaaatc ccaagcctgc cgcgctttac
     7441 cggcggactg gtcggctact tcggttacga aaccatctac aattttgaac acttcgccca
     7501 ccgcctgaaa aacaccacca aagccgaccc gctcggcacg cccgacatcc tcctgatgct
     7561 ctcgcaagag cttgcagtag tggataacct aagcggtaaa atctacctga ttgtttacgc
     7621 cgatccgtcg cagcccgacg gctacgaacg cgcacgcgaa cgcctcgaag acatccgtac
     7681 acagttacgc caaagttgcg ccatcccgct ttcgctcggc agcaaacaca ccgaagccgt
     7741 cagcgaattc ggcgaagagc cgttcaaagc ctgcgttaac aaaatcaaag actacatctt
     7801 tgcaggcgac tgcatgcagg ttgtccccag ccagcgcatg agcatggaat tcaccgacag
     7861 ctcgctcgcc ctctaccgcg ccttgcgcac gctcaaccct tcgccttatc tcttctacta
     7921 cgatttcggc gatttccaca tcgtcggctc ctcgcccgaa atcctcgtcc gccgcgaacg
     7981 cgacgatgtc atcgtccgcc ccatcgccgg cacgcgcctg cgcggcaaaa cccccgccga
     8041 agaccttgcc aacgaacaag atttgttaag cgatgccaaa gaaatcgccg aacacgtcat
     8101 gttgattgac ttaggacgca acgacgtcgg ccgcatcagt aaaaccggcg aagtcaaagt
     8161 taccgacaaa atggtgattg aaaaatactc ccatgtaatg cacatcgttt ccaacgtcga
     8221 aggccgtctg aaagacggca tgaccaacat ggacatcctc gccgctacct tccctgccgg
     8281 cacactctcc ggcgcaccca aagtccgcgc catggaaatc atcgaagaag tcgaaccaag
     8341 caaacgcggc atctacggcg gtgccgtcgg cgtatggggt ttcaacaacg acatggattt
     8401 ggcaatcgcc atccgcaccg ccgtagtaaa aaacaacacg ctatacgtcc aaagcggcgc
     8461 gggcgtggtt gccgactccg atccggcctc cgaatggcag gaaacacaaa acaaagcccg
     8521 agccgtcata cacgccgcgc agatggtgca ggaagggttg gataaatgac ttatgaaaaa
     8581 ctttatgagc ttcgccaaac actcagaccg actaccaaag acggtctcta tacagataat
     8641 gaaaaaagtc gagaaatcct aacggttaga tggagcggca acacagaaaa tcctaaaaat
     8701 ttctcagctg ttgctatagg aattaatcca agtaaagcaa atgatgaaag aagcgacaaa
     8761 acccttaccc aacttgcacg tttcttggat atgtacggtt ttaccaactt caaaatgtta
     8821 aatatttttt ccagttactc tacacagcaa acaggaatta gggcaaacac ccaaaccgat
     8881 ttttccaaat ttaaaggatg tttggaagat gctgatatga ttattcttgc atggggtaca
     8941 gaccgcggtg cttataagga tgaaaaaaac agaatactgg aatttctaaa agcagaaaaa
     9001 tttatggaaa aagtattctg tatttctgaa actggtaatt ccagcgatac aagacatccg
     9061 tcaagaatta gttatagcta tcaacttgta caatttgaag agtcagcatg aaaaacatat
     9121 ctctttctcc gcccgccatg cttggcatcc tcggcggcgg acaattaggc agaatgttta
     9181 ccgttgccgc caaaaccatg ggctacaaag taaccgttct cgaccccgat ccggacgcgc
     9241 cggcagcaga atttgccgac tgtcatttat gcgcgccgtt taacgaccaa gctgctttgg
     9301 acgaattggc aaaatgcgcg gcggtgacca ctgaatttga aaacgtcaat gccgatgcga
     9361 tgcgttttct cgccaaacac accaatgttt cccccggcag cgactgcgtt gccatcgcgc
     9421 aaaaccgcat tcaggaaaag gcatggatac gcaaagcagg attgcaaacc gcgccgtatc
     9481 aagcaatttg caaagccgaa gacatcactg aagaaagcat acaatttctg cccggcatcc
     9541 tgaaaaccgc tacattgggc tatgacggca aaggccaaat ccgcgtcaaa acggtggatg
     9601 aactcaaagc cgcgtttgcc gaacaccgcg gcgtggattg cgttttggaa aaaatggtgg
     9661 acttgcgcgg cgaaatttcc gttatcgtat gccgtctgaa caatgacaac gtgcaaactt
     9721 tcgatcctgc cgaaaacatt cacgaaaacg gtatcctcgc ctactccatc gtcccagccc
     9781 gactgagtgc cgacattcag caacaggcgc gacaaatggc gcagcgtttg gccgatgaat
     9841 tgaactacgt cggcgtattg gcggtagaaa tgtttgttgt cggcgacacg catgaattgg
     9901 tcgtcaacga aatcgcgccg cgtccgcaca attccggcca ccataccgtc gacgcctgcg
     9961 cggcagacca attccagcaa caggtccgcc tgatgtgcaa cctgccacct gctgacacca
    10021 aattgctgag ttcttgctgt atggcgaata ttttgggcga cgtttggcag gaagacggcg
    10081 gcgaaccgga ttggtttccc ctgcaaagcc ggccggacgc gcacctgcac ctttacggca
    10141 aaaaaaccgc gcacaaaggg cggaaaatgg gacactttac cgttttaacc accgattcgg
    10201 acaccgcatt tcaagaagca aaaaaactgc atcagtccct ataatccgac caacggcaca
    10261 gatgccgtct gaagccgccg acatactgcc atgaacctgc tgacactgtt acgccccgcc
    10321 accgtgcaag actgcaaaga catcttcaaa gtccacctgc actccgtcca atacacctgc
    10381 atcctcagct acaacgaaca cgccctaaaa gtatgggaag gcttgttaaa cacagaaagc
    10441 tacctgccga ccatttccga tcccgacaaa gcactttggg ttgccgaata caaaggcaac
    10501 atacagggat ttttccaaat cgactgccaa gaagcacaac tcgatgcact ttacgtccac
    10561 cccctgttcc acaacctcgg actgggcact gccctgcttc atcaggcgga aaccatcgcc
    10621 cacaaatccg gtttgagctt tctgaaactc tacgcatcgc tcaactccgt cccgttttac
    10681 cttctcaacc gctacgaatc gctcggttcg gcagtattgc agcttgaccc cagcatcaaa
    10741 atcaaatgcg aactgatgcg gaaacacctc tgatccgtcc ttataaccaa aactgataat
    10801 cttcaaatca aacattattt ccacaagcgc agacagccgt ataaagttgc cccatctacc
    10861 aaccgacagg acaagcatat gaaaacctac gcaccggcac tctataccgc agccctgctc
    10921 accgcctgca gccccgcagc cgattcaaac catccgtccg gacaaaatgc cccggccaat
    10981 accgaatccg acggaaaaaa cattaccctg ctcaacgcct catacgatgt ggcacgggat
    11041 ttttacaaag aatacaaccc cttatttatc aaaacatacc aatccgaaca ccccggcaca
    11101 tccgtcagca tccaacagtc ccacggcggc tccagcaaac aggcattatc cgtagccaac
    11161 ggccttcaag ccgatgtcgt aaccatgaac caatcctccg acatcgacct gctcgaaaaa
    11221 aaaggactgg tagaaaaagg ctggcaacaa gccctccccg accacgctgc gccctacacc
    11281 agcactatgg ttttccttgt ccgaaaaaac aaccccaaac agatccgcga ttggaacgac
    11341 cttgccaaag acggcgttaa catcgtcatc gccaatccca aaacctcggg caacggacgc
    11401 tacgccttcc tcggcgcata cggttacggt ctgaaaacca ccaacggcaa cgaacaggaa
    11461 gcccaaaaac tcgtcgcatc catcctcaaa aacacccccg tttttgaaaa cggcggacgc
    11521 gccgccacca ccaccttcac acaacgcaac atcggcgacg tactcattac ttttgaaaac
    11581 gaagccaact acgtcagcaa aaaactgacc caaggacagt ttgaaatcgt ctatccgagc
    11641 tacaccattt ccgccgaaag ccccgtcgcc gtcgtcaaca gcgtcgtcgc gaaaaaaggc
    11701 acgcaaaaaa ccgcccgcgc ctatctcgaa tacctttgga gcgaaccggc gcaagaactc
    11761 gccgcctcac tctacctgcg cccccgcaac cccgaagtat tggcaagaca caaagccgac
    11821 ttcccagact tagactcatt ctctcccgaa gaaaaattcg gcggatggga caacatcatg
    11881 aaaacctact tcgccgacgg cggcatattc gaccgcctga ccgcacaaaa atgaccgcta
    11941 tgccgtctga accgcctttc agacggcatt ccacacatca aaacagaaaa accgcgccca
    12001 aaatcatcat cacaagacac aacggcaaac cggatacaaa acccaacacc gccgccaaaa
    12061 tgccgtctga agccgtcggc gcaaccatcc ttatctgggg cgcgcttcag gggcgcataa
    12121 ctttccttaa ccatcccttt tgacagccaa ataaacagtg cttttgcctg tcagaaacaa
    12181 aaccaatatt ttgcagttcg tatcggaaca tttatagtgg attaacaaaa accagtacag
    12241 cgttctcgc
//
LOCUS       DAXIFD010000048        12049 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.048, whole genome shotgun sequence.
ACCESSION   DAXIFD010000048 DAXIFD010000000
VERSION     DAXIFD010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12049
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.048"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            184..963
                     /locus_tag="ACFOCN_000929"
     CDS             184..963
                     /locus_tag="ACFOCN_000929"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6970101.1"
                     /translation="MAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSR
                     LGFYEGEGFIWRAYSIVSAEYADTLEYFAVLIQDGPMSARFAKMQQGDTILLDKNATG
                     FLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDR
                     LAALTEHPLVGEYGHSFRFLPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKFTPES
                     TRFMICGNPDMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF"
     gene            complement(1173..2558)
                     /locus_tag="ACFOCN_000930"
     CDS             complement(1173..2558)
                     /locus_tag="ACFOCN_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HFC6970102.1"
                     /translation="MIVASRWPLLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALV
                     KFEQGRVVRHEWLVNPQKPIPQFVVGLTGISDGMVADAPVFAEIAGELFSVLKGCVLV
                     AHNSRFDYTFLKHEFHRVGIGFSSPVLCSVQLSRCLYPQFYKHSLDSIIERLGIVVED
                     RHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPDG
                     MGVLACFDGGGKVNYIGTFERVYSEVSALLDSGKAPFDWCNTEEVRFFPALGSLHAYK
                     IKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVTDNPPTGLFA
                     NKKAARRALSSWAETYGLCPAAAGILSDGYTEDEPCPVYVSDRCDKACVRSDEQVLAF
                     AHKLPVLDWGKMHEVEITETDPLTGEKVVLHGMGGALEMDDGLWYFDKDLPDAFKAKF
                     KTDRKNIKEIG"
     gene            2676..2752
                     /locus_tag="ACFOCN_000931"
     tRNA            2676..2752
                     /locus_tag="ACFOCN_000931"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2710..2712,aa:Arg,seq:acg)
     gene            2770..2844
                     /locus_tag="ACFOCN_000932"
     tRNA            2770..2844
                     /locus_tag="ACFOCN_000932"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2803..2805,aa:Glu,seq:ttc)
     gene            3403..4578
                     /locus_tag="ACFOCN_000933"
     CDS             3403..4578
                     /locus_tag="ACFOCN_000933"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent flavin oxidoreductase"
                     /protein_id="HFC6970103.1"
                     /translation="MQNIFDPLVIRGKSLTPIVQGGMGVGVSASGLSSAVARENGIGT
                     IASVDLRHLHEDLLAESQINPSEEKYTSLNCTALDREIQKAKSASEGKGLIAVNVMKA
                     VKDHAAYVRQACESGADAVVMGAGLPLDLPEMTEGYHKDVALLPILSESRGINIVLKR
                     WMKKGILPDAIVVEHPAHAAGHLGASTVEGVNDAKFDFKRVIEETFEVFKSLGLESEK
                     IPLILAGGMANFEKVKTALKNWGASAVQIGTAFAVTEEGDAHLNFKKTLAGAETEKVV
                     EFMSVAGLPARGVRTKFLDSYIKRESKLQTNAKADPRRCTQGLNCLTSCGLRDGLSKA
                     GQFCIDIQLAAAFRGEVDKGLFFRGKDPLPFGNAIRTVRETIQYLLTGSEPVATLGR"
     gene            complement(4789..5337)
                     /locus_tag="ACFOCN_000934"
     CDS             complement(4789..5337)
                     /locus_tag="ACFOCN_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HFC6970104.1"
                     /translation="MSQNTPIKPWYKHVWPWILMAGPIFVVIASVAMFFVAQQHATDL
                     VTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISPDMNAAKVFVGGEFDGKQPLNLLL
                     MHPTRKADDQTVALKPVGSAQNGRAEYEAVFKTLSPTNHWYVRVEDAAGVWRVENKWI
                     TSQGNAVDLTPMDKLFNNTESK"
     gene            complement(5340..6836)
                     /gene="ccoG"
                     /locus_tag="ACFOCN_000935"
     CDS             complement(5340..6836)
                     /gene="ccoG"
                     /locus_tag="ACFOCN_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HFC6970105.1"
                     /translation="MTTENQAGSPASGIGTSEQTKAAPKAKKTFDPRASVIQIHPEGE
                     RIHPKKAEGRFAKLRIAAVLATQFVFYVIPWFNWSGRQAVVFNIPERHFFIFGLSLGV
                     GDLIYLALLLMICAFGLFWWTTIAGRLWCGYSCPQTVYTEIMLWIDNLVEGDRNKRLK
                     LEKSPWNFTKIRIKATKYLLIFLVCAWTGITFAGWFVPIRQFVPDLFTGAAGGGAMFA
                     AAFYGFMTFFFAHIMREKVCLHMCPYARFQSAMFDKDTLIVSYDAERGEPRGARKKTV
                     NKEEAGLGDCINCAMCVQVCPVGIDIRNGLQYQCIGCAACIDACDEVMDKMGYPRGLI
                     RYTTESALEHEYSEKDIKKRLLRPRVAGYGAVLALVIIAFLAGLSTRKMVEVDILKDR
                     GVLVRENAKGWLENAYSLRIINKSEKEQLITASVKGFDEIALTGLPEGGIKVAPRETV
                     TLPVQVSTIPEYADKGSHPIEFTFQYRESGAPDGKPVVLEEDATFIGE"
     gene            7364..9343
                     /gene="tkt"
                     /locus_tag="ACFOCN_000936"
     CDS             7364..9343
                     /gene="tkt"
                     /locus_tag="ACFOCN_000936"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HFC6970106.1"
                     /translation="MSQLANAIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNH
                     NPANPKFYNRDRFVLSNGHASMLLYSLLHLTGYNLSIEDLKNFRQLHSKTPGHPEYGY
                     TDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
                     HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDT
                     AAIQAAIEAARAETGKPSIICCKTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGW
                     TYPAFEIPQEIYDAWNAKEKGAKLEAEWDKLFAQYQAKYPAEAAEFVRRMDKKLPENF
                     DGYVQTALKEVCAKAETVATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVS
                     VTRDKGGNYIHYGVREFGMGAIINGLVLHGGVKPFGATFLMFSEYERNALRMAALMKI
                     NPVFVFTHDSIGLGEDGPTHQPIEQTATLRLIPNMDVWRPCDTAESLVAWAEAVKAAD
                     HPSCLIFSRQNLKFQARSEQQLNDIKRGGYVISEAQGNAQAVIIATGSEVELALEAQK
                     ALAAQNIAVRVVSMPSTNVFDRQDTAYQAAVLPEGLPRIAVEAGHADGWYKYVGLNGA
                     VVGINRFGESAPADLLFKEFGFTVDNVVDTVKSVL"
     gene            9491..10879
                     /gene="fumC"
                     /locus_tag="ACFOCN_000937"
     CDS             9491..10879
                     /gene="fumC"
                     /locus_tag="ACFOCN_000937"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HFC6970107.1"
                     /translation="MNTRTEHDTMGNVEVPSEAYWGAQTQRSRNNFKIGGETLPQPLI
                     YALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGRLDGQFPLVVWQTGSGTQSN
                     MNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAAIEINRHLI
                     PAVKALRDTLDKKAQAFAPIVKIGRTHLQDATPLTLGQEFSGYVSQLDHGLGRLNDAL
                     KDLYELALGGTAVGTGLNSHPEYAEKAAAKLAELSGLPFVSAPNKFEALGGRDAAVAA
                     SGALKTLAASLNKIANDIRWLASGPRCGLGEIKIPENEPGSSIMPGKVNPTQCEAMTM
                     VCCQVFGNDVTIGMAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEP
                     VPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFD
                     ELVVPADMVHPR"
     gene            complement(10944..11867)
                     /locus_tag="ACFOCN_000938"
     CDS             complement(10944..11867)
                     /locus_tag="ACFOCN_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6970108.1"
                     /translation="MENQRPLLGFALALLAAMTWGTLPIAVRQVLKFVDAPTLVWVRF
                     TVAAAVLFVLLALGGRLPKWRDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQ
                     VLWQISPFTMIVVGVLVFKDRMTAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGV
                     LLCAAGSMAWVCYAVAQKLLSAQFGPQQILLLIYAASAAVFLPFAKPAHIGSLDGTLA
                     WVCFAYCCLNTLIGYGSFGEALKHWEASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAA
                     PDMNGLGYVGALVVVGGAVTAAVGDRLFKRR"
BASE COUNT         3103 a         3484 c         2790 g         2672 t
ORIGIN      
        1 aggaggatta ggggggtatt ggggtaaaat tagtggatat ttgaaacgaa aacagccgaa
       61 aacctgtgtt tgggtgtcag ctgtcgggag ggaaaggaat tttgcaaagg tctcagaccg
      121 tcaatgcgga aaaaaacacc caaattggct ataatcccga caaacacact caaggacaac
      181 aacatggcag cctcgcccga agcaaaattc actgaagaaa agattttgtg ggtcaaacac
      241 cacacgccga aactcatcac tttcgccatc agccgtcccg aatcctaccg ttttaaagcg
      301 ggacagttct cccgactcgg tttctacgaa ggggaaggct ttatttggcg tgcctactcc
      361 atcgtttccg cagaatatgc cgacacgctc gaatattttg ccgtactcat ccaagacggc
      421 cccatgtctg cccgtttcgc caaaatgcaa cagggcgaca ccatcctgct cgataaaaat
      481 gccaccggct tcctgcttcc cgaacgcttc cccgacggca aggatttggt gatgctctgc
      541 accggctccg gcatcgcccc cttcctttcc attctcgaac aacctgaaat ccggcagcgt
      601 ttcgataccg tcaacctgat acattccgta tcttttcccg aagaattgat tttcaacgac
      661 cggctcgccg cattgaccga acatcccctg gtaggcgaat acggacactc gttccgtttc
      721 ctccctgtta ccacccgtgc cgccaacccc tcgggcttaa gcggaaaacg cattccggaa
      781 ctcttaaaaa acaacagcat cgaacaggcg ctgcatacca agttcacccc ggaatccaca
      841 cggtttatga tttgcggtaa cccggacatg gtcaaagaca ctttccaaac gctgcttgac
      901 atgggttacg ccatgcaccg caaccgcatt cccggtcaaa tcatgatgga aaacggcttc
      961 taaaaaccac cctgcttgtc cgatgccttc ggatggacgg tcaaaccgac acggcacgaa
     1021 aaccgcgtcg gcaaaaatgc cgtctgaaaa gttcagacgg catcttcgga cacattacct
     1081 gcaaacggta acacattcca acccaaaccg attaggcaat cagtacgaac gactgtttac
     1141 atacttgccg gctttcacca accggtatcg atttaaccga tttccttaat atttttcctg
     1201 tccgttttaa acttcgcctt aaacgcatcc ggtaaatctt tatcgaaata ccaaagcccg
     1261 tcatccattt ctaatgcgcc gcccattcca tgcagaacaa ctttttcccc cgttaaagga
     1321 tcggtttcgg taatttccac ctcatgcatt tttccccaat ccaagacagg cagcttgtgt
     1381 gcaaacgcca aaacctgttc gtcagagcgg acgcacgcct tatcacatcg gtctgaaaca
     1441 tatacgggac aaggctcatc ctctgtataa ccgtccgaca ggataccggc tgcggcagga
     1501 cacaatccgt atgtttccgc ccacgacgac aaagcccgtc tcgctgcctt tttattggca
     1561 aataatccgg taggcggatt atccgtcaca ccgtttttca aagccgctgt tttcgcattc
     1621 aacatgccgt ctgaaccttt ttcaaacctg acggtcgtaa atgttttaag cagatttttg
     1681 gcagatacat aacaacccga atgataacgt ccgaccaatt ccgctttaat cttatatgca
     1741 tgcaggctgc ccaatgcagg aaaaaaacgg acttcctccg tattgcacca atcaaacggg
     1801 gcttttccgg aatccaataa agccgaaacc tcgctatata cccgttcaaa cgtaccgatg
     1861 taatttactt ttcctccgcc gtcgaaacag gccagcaccc ccataccgtc aggcaaaccg
     1921 tacaactgtt ccctcaaccg ttcgggcagc gcggcaggca acggtttcgg attcatcaaa
     1981 cggaaacact gcctgatcca tgcctcgacc ccgtgttccg acagactgta ttccaaataa
     2041 tcgcacaatg ccgatacatc cgccatcgca cgatgcctgt cttccacaac aatccccaac
     2101 ctttcgatga tactgtccag gctgtgcttg taaaattgcg gatacagaca ccgggacagc
     2161 tgcacactgc acaaaacagg cgatgaaaat ccgataccca cacgatgaaa ctcatgcttt
     2221 aaaaacgtat agtcgaaacg gctgttatgt gcaaccagca cacaaccctt caataccgaa
     2281 aacaactcgc cggcaatctc tgcaaaaaca ggcgcatcgg caaccatgcc gtctgaaatc
     2341 cccgtcagcc ccaccacaaa ctgcggaatc ggtttttgag gattaaccaa ccactcatgc
     2401 ctcaccaccc ttccctgctc aaacttgacc aaagccactt cggttaccct gtcttcatac
     2461 agattgccgc ccgtcgattc caaatcaacc acggcaacag gcattccaaa ccgtaaaaat
     2521 accttttcca gcaagggcca gcgagaagca acaatcattt tattctcttt aaattcaaac
     2581 aacaaaccaa tattttacac ttttaaggca tttcatccaa caaaacaatt gacagaatcc
     2641 gatgattacc ctaaaattcg aatctttctt gcagcgcacc cgtagctcag ttggatagag
     2701 tatctggcta cgaaccagag ggtcgggcgt tcgaatcgct ccgggtgcgc cagtaagaaa
     2761 atacaatatg cgcccatcgt ctagcggtta ggacatcgcc ctttcacggc ggtaaccggg
     2821 gttcgattcc ccgtgggcgt gccaaattct aaatccccga gattatcgct cggggatttt
     2881 ttattgtctc agcaactcgt taccatatct ttacctaccc ccttcatcag aatctcagac
     2941 gtaatcgaat catattcaaa cctttgccgt gcaaaccgat atcccataac cggatgcggt
     3001 gtccgtccaa cattttaccc gattgaaacg cctgatatat tgcaccccat caacgtggca
     3061 ttacttttct taacaatccc ctttgacagc aactgactag ggctttttta tgccatcatc
     3121 aaatttatag tggattaact ttaaaccagt acggcgttgc ctcgccttgc cgtactattt
     3181 gtactgtctg cggcttcgtc gccttgtcct gatttttgtt aattcactat aatattttct
     3241 ctcccgattg aaacaggcgt aacagaatat gcccgaagct ccggctgctt tcttgtttac
     3301 cgccgcgata tttagagtat aataccaaat ttgagcaata gttctaaaac agttagaacc
     3361 atttttcatg agcctgactg attcgtacac tcggagaaac tgatgcagaa tatttttgac
     3421 cctttggtta ttcgtggaaa atcccttacc cccatcgtgc aaggcggtat gggggtcggt
     3481 gtttccgcat cgggtttatc cagcgcggtg gcgcgtgaaa acggtatcgg aacgattgcc
     3541 agtgtggatt tgcgccacct tcacgaagac ctactcgccg aatcacaaat caatccgagt
     3601 gaagagaaat atacatcttt gaactgtacc gcattagaca gggaaatcca aaaagccaaa
     3661 agcgcttcag agggaaaagg actgattgcg gtcaacgtga tgaaggcggt caaagaccac
     3721 gccgcgtatg tccgccaggc ttgcgaatca ggggcggatg cggttgtaat gggtgccggc
     3781 ctgcctttag acctgccgga aatgaccgag ggctatcata aagatgtcgc gctgctgccg
     3841 attctgtccg aatcgcgcgg tattaatatc gtcttgaaac gttggatgaa aaaaggcata
     3901 ttgcccgatg cgattgtagt cgaacatcct gcccacgcgg ccggacattt gggtgcatca
     3961 accgttgaag gcgtaaacga tgccaagttc gacttcaaac gcgtgattga ggaaacgttt
     4021 gaagttttca aaagtttagg gctggaaagc gaaaaaatcc cgcttattct tgcgggaggc
     4081 atggcaaatt ttgaaaaagt caaaaccgcc ctaaagaact ggggagcatc cgccgttcaa
     4141 atcggtacgg cttttgccgt taccgaagaa ggagatgcac accttaactt caaaaaaacg
     4201 ctcgccggtg cggaaactga aaaagtagtc gaatttatgt ctgttgccgg tttgccggcg
     4261 cgcggtgtcc gcaccaaatt cctagacagc tacatcaagc gtgaaagcaa acttcagaca
     4321 aacgccaaag ccgacccgcg ccgctgtacc caaggtttaa actgcctaac cagttgcggt
     4381 ctgcgcgacg ggctttccaa agcaggacag ttctgtattg atatccagct tgccgccgca
     4441 ttccgtggag aagtagataa aggcctgttc ttcagaggta aagacccgct gcccttcggc
     4501 aatgccatcc gcaccgtccg cgagacgata caatatctgc tgacggggag cgaacctgtt
     4561 gcaacgctcg gacgctgaca tcaggtagga tttgatttgc aaacaaaatg ccgtctgaag
     4621 ggctttcaga cggcgttttt caggctgcgt tccggaatag tgttaaaaaa taaacgggat
     4681 gagatacatt tattttcgtc cgacaaatca aaccatcgcg ccgaatgatc aaataatgcc
     4741 tgcacggcat tacatctggc aaagcaatgc aatgaaaaca cggctttttt atttgctttc
     4801 agtattattg aaaagcttgt ccatcggggt caaatcgacc gcattgcctt ggctggtaat
     4861 ccatttgttc tcgacgcgcc acacgcctgc cgcgtcctcc acgcgcacat accagtggtt
     4921 ggtcggcgaa agggttttga acaccgcctc atattccgcc ctgccgttct gcgcgctgcc
     4981 gacgggcttg agggcgacgg tttgatcgtc cgccttgcgg gtcgggtgca tcagcagcag
     5041 gttcaaaggc tgtttgccgt caaactcgcc gccgacaaac acttttgccg cattcatatc
     5101 gggggaaatg agaacctgca ccccgatatg ccgtctgacg gcttcttcat cccgatgaag
     5161 ctggatgtcg atatgtttgc cgtctttata ataatcgtcc gtaaccaaat ctgtcgcgtg
     5221 ctgctgcgcg acaaaaaaca tagcgacgct ggcgatgacg acaaaaatcg gccccgccat
     5281 caagatccac ggccagacgt gtttgtacca aggtttgatt ggagtgtttt gagacacggt
     5341 tattctccga taaaggttgc atcttcttcc aagacgaccg gcttgccgtc gggcgcgccg
     5401 ctttcgcggt attggaaggt aaattcgata gggtggctgc ctttgtccgc gtattccgga
     5461 atggtggaca cttggacggg aagggttacc gtttcgcgcg gggcaacctt gataccgcct
     5521 tcgggcagcc cggtcagggc gatttcgtca aagcctttga cacttgcggt aatgagctgt
     5581 tctttttcac ttttgttgat gatacgcagg ctgtatgcgt tttccagcca gcctttggcg
     5641 ttttcgcgca ccagtacgcc acggtctttc aaaatatcga cctcgaccat tttgcgcgtg
     5701 gacaaaccgg ccaggaaggc aatgataact aacgccaaca ccgcgccgta acctgccacg
     5761 cgcggtctga gcagccgttt tttaatgtct ttttcagaat attcgtgttc cagcgcgctt
     5821 tcggtcgtat aacggattaa tccgcgcgga tagcccattt tgtccataac ctcatcgcac
     5881 gcgtcgatac aggcggcgca gccgatacat tggtattgca gaccgttgcg gatgtcgatg
     5941 ccgacggggc agacttggac gcacatcgca cagttgatgc agtcgcccaa acccgcctct
     6001 tccttattga ccgttttctt gcgcgcgccg cgcggttcgc cgcgttccgc gtcataagaa
     6061 acaatcagcg tgtccttgtc gaacatcgcg ctttggaaac gtgcatacgg acacatatgc
     6121 aggcatactt tttcacgcat aatgtgggcg aagaagaagg tcataaagcc ataaaacgct
     6181 gcggcaaaca tcgcgccgcc acctgctgct ccagtgaata aatcgggaac gaactggcgg
     6241 atagggacaa accagcctgc aaacgtgatg cccgtccacg cgcagacaag gaaaatcagc
     6301 aggtatttgg tggctttgat gcggatttta gtgaaattcc acggcgattt ttccagtttc
     6361 agccgtttgt ttctatcgcc ttcgaccagg ttgtcaatcc acagcataat ttcggtgtaa
     6421 accgtttgcg ggcaggaata gccgcaccac agtcgccctg caatcgtcgt ccaccaaaac
     6481 agcccgaagg cgcaaatcat cagcagcaag gcaaggtaaa tcaaatcgcc cacccccaac
     6541 gacaatccga aaatgaagaa atgccgttcg gggatattga aaacgacggc ctgcctgccg
     6601 ctccagttga accacggaat gacgtaaaac acaaactgcg tcgccaatac ggcggcgata
     6661 cgcagtttgg cgaaccgtcc ttccgccttt ttgggatgga tgcgttcgcc ttcgggatgg
     6721 atttgaatca cgctggctcg cggatcgaat gttttttttg ctttcggcgc ggcttttgtt
     6781 tgttcggacg tgccgattcc ggatgccgga ctgccggctt ggttttccgt ggtcattctg
     6841 cattccttag atttttgatt gatggtttgc ccgttaccgc cgccgtttgc ttttcagacg
     6901 tcatttttct tgttttttaa ggcgttgtgt ttcaagtttt gagaaaatcc gtttttccca
     6961 aaatatattt ccgctattgt acaactttat gcgccgtccg gatgtatggg gcggatacat
     7021 ttcccatccg catcaaaacg cctggatttt accttaccgc ccgaacaaaa tccgaatacg
     7081 gttaaaaaaa aagactaaaa aaaccgacac ccccatatcg gcagaaccga cggcgcaagc
     7141 tcataaacaa acgctatcga caatccggca cacaatctat aactttttat ttcaaaagga
     7201 ataatggcag gcttcgcccg caaatcgaaa atccttcccc gcctgtcccc tgccgccgcc
     7261 ttcccacgcg tccgcccttt tcttgaaagc ataagcgaat cgggcgataa tcaacgcttt
     7321 ccgattatcc acttatctga aacaccagca aggaaaatac aaaatgtctc aactggcaaa
     7381 cgcaatccgc ttcctctcgg ccgatgccgt tcaaaaagcc aattccggcc accccggcgc
     7441 gcctatgggt atggcggaaa tggcggaaac attgtggacg aaattcctca atcacaaccc
     7501 cgccaacccc aaattctaca accgcgaccg cttcgtcctc tccaacggcc acgcgtctat
     7561 gctgttgtac agcctgctgc acctgaccgg ctacaaccta agcattgaag acttgaaaaa
     7621 cttccgccaa ctgcacagca aaacccccgg ccatcccgaa tacggctaca ccgacggcgt
     7681 ggaaaccacg accggcccgt tggggcaagg gattgccaac gcggtgggta tggcattggc
     7741 agaaaaaatc cttgccgccg aatttaataa agacggtttg aacatcgtcg atcattacac
     7801 ctacgtcttt atgggcgacg gctgtctgat ggaaggcgta tcgcacgaag cctgttcgct
     7861 cgccggcacc ttgggcttgg gcaaactgat tgttttatat gatgacaaca atatttccat
     7921 tgatggtaaa gtggacggct ggtttaccga aaacatcccg caacgctttg aaagctacgg
     7981 ctggcacgtc gttcctaacg taaatggtca tgacaccgcc gccattcaag ccgccatcga
     8041 agccgcacgt gccgaaaccg gcaaaccgtc catcatctgc tgtaaaacct taatcggcaa
     8101 aggcagtgcc aataaagaag gcagccacaa aacccacggc gcacctttgg gtgcggacga
     8161 aatcgaagcc acgcgcaaac atttgggctg gacttaccct gcctttgaaa tcccgcaaga
     8221 aatttacgat gcgtggaatg ccaaagaaaa aggcgcgaaa ctggaagccg aatgggacaa
     8281 actgttcgcg caataccaag ccaaatatcc tgccgaagcc gcagaatttg tgcgccgtat
     8341 ggataaaaaa ctgccggaaa actttgacgg gtacgttcag acggcattga aagaagtgtg
     8401 cgccaaagcc gaaaccgtcg ccacccgcaa agccagccaa aacagcatcg aaatcttggc
     8461 aaaagagctg cccgaactgg tgggcggctc tgccgacctg accccgtcca atctgaccga
     8521 ctggtcaaac agcgtctccg ttacccgcga caaaggcggc aactacatcc actacggcgt
     8581 gcgcgagttc ggcatgggtg cgattataaa cggcttggta ttgcacggcg gcgtgaaacc
     8641 ctttggcgcg accttcctga tgttcagcga atacgagcgc aacgccctgc gtatggcggc
     8701 actgatgaaa atcaaccccg tgttcgtgtt cacccacgat tccatcggtt tgggcgaaga
     8761 cggcccaacc caccagccga ttgagcaaac cgccaccctg cgcctgattc cgaatatgga
     8821 cgtatggcgg ccgtgcgaca ccgccgaatc cttggtcgct tgggcagaag ccgtcaaagc
     8881 cgccgatcac ccgtcctgcc tgattttcag ccgtcaaaac ctgaaattcc aagcgcgcag
     8941 cgaacaacaa ctgaacgaca tcaaacgcgg cggctacgtc atcagcgaag cccaaggcaa
     9001 cgcccaagcc gtcatcattg ccaccggttc cgaagtcgag ctggctttgg aagcgcaaaa
     9061 agcactcgcc gcgcaaaaca tcgccgtgcg cgtcgtttcc atgccgtcca ccaacgtatt
     9121 cgaccgccaa gacaccgcct atcaagccgc cgtcctgccc gaaggcctgc cgcgcattgc
     9181 cgtagaagcc ggacacgccg acggctggta caaatacgtc ggcctgaacg gcgcagtcgt
     9241 cggcatcaac cgcttcggcg aatccgcccc tgccgatctg ctgttcaaag aattcggctt
     9301 taccgtggac aatgtggtcg atacagtgaa atcagtgctg taaccccaca cctaaacaaa
     9361 tgccgtctga aaccaattag ggcttcagac ggcatttgtt tgccctctct ccttgatact
     9421 tcctcattcc tccaatctcc attataatat ttgcgaatca ctcttattca catttcaaaa
     9481 ggagaaacgt atgaacaccc gcaccgaaca cgacaccatg ggcaatgtcg aagtcccgtc
     9541 cgaagcctat tggggcgcgc agacccagcg cagccgcaac aatttcaaaa tcggcggcga
     9601 aaccctgccg cagccgctga tttatgcttt ggcgctggtg aaaaaagccg ctgccgcgac
     9661 caatgtttcc ctcggcagga ttaagccgga acaggcggat ttgattacgc aggcggcgga
     9721 tgatgtgttg aacggcaggc ttgacggaca gtttccttta gtggtttggc agaccggctc
     9781 cggcacgcag tccaatatga acatgaacga agtgctggcg aaccgcgcca acgaaatcgc
     9841 cggtacgggt ttggcggcgt atcagcccgt ccatcccaac gaccatgtga accacgcgca
     9901 atcgaccaac gacgcattcc cgaccgccat ccacgttgcc gccgcgattg aaatcaaccg
     9961 ccacctcatc cccgccgtaa aagccctgcg cgacaccttg gacaaaaaag cccaagcctt
    10021 cgcccccatc gtcaaaatcg gccgcaccca cttgcaggac gcgacgccgc tgactttagg
    10081 ccaagaattt tccggctacg tttcccagct cgaccacggc ttaggccgtc tgaatgacgc
    10141 gcttaaagac ttgtatgaac ttgctttggg cggtacggcg gtcggcacgg gtttgaacag
    10201 ccatcccgaa tacgccgaaa aagccgccgc caaactcgcc gaattgtccg gcttgccgtt
    10261 tgtcagcgcg ccgaacaaat ttgaagcctt gggcggacgc gatgccgccg ttgccgcttc
    10321 gggcgcattg aaaacgctgg cggcaagcct gaataaaatc gccaacgaca tccgctggct
    10381 ggcaagcggc ccgcgctgcg gtttgggcga aatcaaaatc cccgaaaacg agccgggttc
    10441 gtccatcatg ccgggcaaag tcaacccgac ccaatgcgaa gcgatgacca tggtgtgctg
    10501 ccaagtgttc ggcaacgacg ttaccatcgg catggcgggc gcgtcgggca atttcgagct
    10561 gaacgtctat atgcccgtta tcgcctacaa cctcttgcaa tccatccgcc tgttgggcga
    10621 cgcgtgcaac agcttcaacg aacactgcgc cgtcggcatc gaacccgtac cggaaaaaat
    10681 cgactatttc ctgcaccatt ccctgatgct ggttactgcg ttaaaccgta aaatcggcta
    10741 cgaaaacgcc gccaaagtcg ccaaaaccgc ctacaaaaac aacaaatcgt tgcgcgaaac
    10801 cgccgttgag ttgggcttgc tgacgggcga agaatttgac gaactggtcg ttcctgccga
    10861 tatggttcat ccgcgctaat ctttccctca aataaaatgc cgtctgaaac ctcgttcaga
    10921 cggcattttc cgttgcctgc gaactagcgg cgtttgaaca gcctgtcccc caccgccgcc
    10981 gtaaccgcac ccccgaccac gaccagtgcg ccaacataac ccaaaccgtt catatccggc
    11041 gcggcaaaag tatcaggcat cacataatgc ccgagcaaag aaaatattac ggtaaacacg
    11101 gggagcaagg ttgttaccgc gctgactttg gaagcctccc aatgtttcaa cgcctcgccg
    11161 aacgagccgt aaccgattaa cgtattcaag cagcaatacg caaaacaaac ccacgccaac
    11221 gtaccgtcca aacttccgat gtgtgccggt ttggcaaacg gcaggaacac ggcggcactt
    11281 gccgcataaa tcaacagcag aatctgttgc ggtccgaatt gcgccgacag cagcttttgc
    11341 gccacggcat aacacaccca tgccatactg cctgccgcac acagcaacac gcccttcgca
    11401 tacgcgccca aacccgacaa ctcgccgaat ttatcgttaa aaaacataag caaaccggca
    11461 agcagcaaaa ccaagccgat tttctgagcg gcagtcatcc ggtctttaaa caccaacaca
    11521 ccgacaacaa tcatcgtaaa cggcgaaatc tgccacaaaa cctgcgtcgt ggtcggcgaa
    11581 atataatgca gcccttgggc aatcagcaca aagtttgccg aaatgcccgc cacgccgagc
    11641 agcagcagcc tgaatgagca ccaagaaaaa tcccgccact tcggcagccg cccgcccaat
    11701 gccagcaaaa caaacaatac cgccgccgcc acggtaaaac gcacccacac cagcgtcggc
    11761 gcatcgacaa acttcaatac ctgccgcacg gcaatcggca gcgttcccca cgtcatcgcc
    11821 gccaaaagtg ccaacgcgaa gcctaggagc ggcctttggt tttccatcct gattttccta
    11881 tttttaaaca accgtattgc cggacgatgc cggtttgccg catcgggcaa tgatggttca
    11941 agcgtttgac gtttgattcc aaccctttga tttcaaacaa accggctgaa gctcggctat
    12001 tgcttcgcgc tatttgaaaa caccgcctga attttaaaat atagtggat
//
LOCUS       DAXIFD010000049        12023 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.049, whole genome shotgun sequence.
ACCESSION   DAXIFD010000049 DAXIFD010000000
VERSION     DAXIFD010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12023
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.049"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            53..1243
                     /locus_tag="ACFOCN_000939"
     CDS             53..1243
                     /locus_tag="ACFOCN_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6970109.1"
                     /translation="MSGNPINLHKLTLIMPLPLPSPEARQFSLKLQTLIAEEIGKHGN
                     WIPFSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQLQELLSQT
                     AGNIYEFGAGTGQLAADLLGSISDGISRYYIIEISPELAARQKNLIQARAPEASQKVV
                     HLTALPEAFDGIIIGNEVLDAMPVEIVRKNEGGSFEHVGVCLDNDRFTYSARPLHDLQ
                     LSALASLYFPQTDYPYTSELHPQQYAFIRTLASRLERGGMIFIDYGFDAAQYYHPQRN
                     QGTLIGHYRHHVIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDLTGYLPQSHFLLNL
                     GITELLAQVGKTDSPAYIREAAAVQKLIDQHEMGELFKVIAFGKNIGVDWAGFRFGDI
                     CHKL"
     gene            1375..1451
                     /locus_tag="ACFOCN_000940"
     tRNA            1375..1451
                     /locus_tag="ACFOCN_000940"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1409..1411,aa:Met,seq:cat)
     gene            1459..1534
                     /locus_tag="ACFOCN_000941"
     tRNA            1459..1534
                     /locus_tag="ACFOCN_000941"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1492..1494,aa:Ala,seq:ggc)
     gene            complement(1816..2637)
                     /locus_tag="ACFOCN_000942"
     CDS             complement(1816..2637)
                     /locus_tag="ACFOCN_000942"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HFC6970110.1"
                     /translation="MDFLIVLKALMMGLVEGFTEFLPISSTGHLIVFGNLIDFHSNHK
                     VFEITIQLGAVLAVVFEYRQRFSNVLHGVGKDRKANRFVLNLAIAFIPAAVMGLLFGK
                     QIKEYLFNPLSVAVMLVLGGFFILWVEKRQSRAEPKIVDVDALRPIDALMIGVAQVFA
                     LVPGTSRSGSTIMGGMLWGIERKTATEFSFFLAVPMMVAATAYDVLKHYRFFTLHDVG
                     LILIGFVAAFVSGLVAVKALLRFVSKKNYIPFAYYRIVFGIAIIILWLSGWISWE"
     gene            complement(2670..3314)
                     /locus_tag="ACFOCN_000943"
     CDS             complement(2670..3314)
                     /locus_tag="ACFOCN_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6970111.1"
                     /translation="MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQKQSGKIE
                     VLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVKLSGL
                     KYQANPAVFKAVYEQKIRLENRSVAEKWALSQKGFDGKKLMRAYDSPAAAAAASKMQQ
                     LTEQYRIDSTPTVVVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK"
     gene            complement(3317..4162)
                     /gene="ftsN"
                     /locus_tag="ACFOCN_000944"
     CDS             complement(3317..4162)
                     /gene="ftsN"
                     /locus_tag="ACFOCN_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6970112.1"
                     /translation="MNKFSQSGKGLSGFFFGLILATVIIAGILFYLNQSGQNAFKIPA
                     SSKQPAETEILKPKNQPKEDIQPEPADQNALSEPDAATEAEQSDAEKAADKADEVEEK
                     AGEPEREKSDGQAVRKKVLTEEREQTVREKAQKKDAETVKKQAVKPSKETEKKAPKEE
                     KKAEKEKVAPKPTPEQILNSGSIEKARSAAAKEVQKMKTSDKAEATHYLQMGAYADRR
                     SAEGQRAKLAILGISSKVVGYQAGHKTLYRVQSGNMSADAVKKMQDELKKHEVASLIR
                     SIESK"
     gene            complement(4268..5764)
                     /locus_tag="ACFOCN_000945"
     CDS             complement(4268..5764)
                     /locus_tag="ACFOCN_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HFC6970113.1"
                     /translation="MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKE
                     SRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGRFDLPIAIGILAASGQVAPEKLA
                     EYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
                     GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLM
                     MGPPGTGKSMLSQRLPGILPPLTEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSAS
                     AAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLENGEIHISRAARQA
                     VYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSL
                     SAAELMQQEAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQACIQKEAQEAL
                     GGLLEKLSLSARSFHRIMRVARTLADLAGDEEVGRSHVMKAIGFRRAL"
     gene            complement(5778..6098)
                     /locus_tag="ACFOCN_000946"
     CDS             complement(5778..6098)
                     /locus_tag="ACFOCN_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003763371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HFC6970114.1"
                     /translation="MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLV
                     TREEFDIQQQVLIKTRTKLAALEARLAKLEAAQNPERAALEAAEAAAEEAVAEIRQQT
                     EAGE"
     gene            6581..8107
                     /gene="putP"
                     /locus_tag="ACFOCN_000947"
     CDS             6581..8107
                     /gene="putP"
                     /locus_tag="ACFOCN_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HFC6970115.1"
                     /translation="MNPMYITFAIYLVAVLLIGLAAYFSTRNFDDYILGGRSLGPFVT
                     AMSAGASDMSGWLLMGLPGAIYLSGLNEAWIAIGLLVGAYFNWLLVAGRLRVHTEYAN
                     NALTLPDYFFHRFGAGGHLMKVVSALIILFFFTIYCASGIVAGATLFQSLFEGMTYNQ
                     AMWLGAGATIAYTFLGGFLAVSWTDTLQASLMIFALILTPVMVYLGLGGAEQMSAAIQ
                     SVAAGTGKEYGSLFAGTTVIGIISTAAWGLGYFGQPHILARFMAAESAKSLVSARRIG
                     MTWMALCLAGAVAVGYFGIAYFGANPDKVSSMSGNHERIFIALSTLLFNPWIAGIILS
                     AILAAVMSTLSCQLLVCSSAITEDFYKGFLRKNAQQSELVWVGRLMVLAIAVISILIA
                     SDPNSKVLGLVSYAWAGFGAAFGPIVILSVLWKRITAYGALSGMVAGALTVVVWAEWV
                     KKPAQAAGESGLLTMYEIVPGFIVCLIVAVLVSLFNKEPSRETQERFEKADADYRAAR
                     "
     gene            complement(8197..8364)
                     /locus_tag="ACFOCN_000948"
     CDS             complement(8197..8364)
                     /locus_tag="ACFOCN_000948"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970116.1"
                     /translation="MKHFLDSPKFFGGQAASVRPEYGNIVINPQMKYKASNAGRVGAS
                     VSLKMKRVKHK"
     gene            8356..11961
                     /gene="putA"
                     /locus_tag="ACFOCN_000949"
     CDS             8356..11961
                     /gene="putA"
                     /locus_tag="ACFOCN_000949"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HFC6970117.1"
                     /translation="MFHFAFPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNA
                     ASELARRLVTQVRAGRTKAGGVDALMHEFSLSSEEGIALMCLAEALLRIPDNATRDRL
                     IADKISDGNWKSHLNNSPSLFVNAAAWGLLITGKLTATNDKQMSSALSRLISKGGAPL
                     IRQGVNYAMRLLGKQFVTGQTIEEALQNGKEREKMGYRFSFDMLGEAAYTQADADRYY
                     RDYVEAIHAIGKDAAGQGVYEGNGISVKLSAIHPRYSRAQHCRVMGELLPRLKELFLL
                     GKKYDIGINIDAEEANRLELSLDLMEALVSDPDLAGYKGIGFVVQAYQKRCPFVIDYL
                     IDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPTYTRKVHTDISYLACARKLLS
                     AQDAVFPQFATHNAYTLGAIYQMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRVY
                     APVGTHETLLAYLVRRLLENGANSSFVNQIVDENISIDCLIKSPFDTIAEQGIHLHNA
                     LPLPRDLYGKCRLNSQGVDLSNENVLQQLQEQMNKAAAQDFHAASIVNGKARDVGEAQ
                     PIKNPADHDDIVGTVSFADAALAQEAVGAAVAAFPEWSATPAAERAACLRRFADLLEQ
                     HTPALMMLAVREAGKTLNNAIAEVREAVDFCRYYANEAEHTLPQDTKAVGAIVAISPW
                     NFPLAIFTGEVVSALAAGNTVIAKPAEQTSLIAGYAVSLMHEAGIPTSALQLVLGAGD
                     VGAALTNDARIGGVIFTGSTEVARLINKALAKRNDNPVLIAETGGQNAMIVDSTALAE
                     QVCADVLNSAFDSAGQRCSALRILCVQEDVADRMLDMIKGAMDELVVGKPIQLTTDVG
                     SVIDAEAQQNLLNHINKMKGVAKSYHEVKTAADVDSEKSTFVRPILFELNNLNELQRE
                     VFGPVLHVVRYRADELDSVIDQINSKGYALTHGVHSRIEGTVRHIRSRIEAGNVYVNR
                     NIVGAVVGVQPFGGHGLSGTGPKAGGSFYLQKLTRAGEWVAPTLSQIGQADEAALKRL
                     EALVHKLPFNAEEKKAAAAALGHARIRTLRRAETVLTGPTGERNSISWHAPKRVWIHG
                     GSLLQAFCALTELAASGVQAVVEPDSPLASYTADLEGLLLVNGKPETADISHVAALSP
                     LDSARKQELAAHDGALIRILPSENGLDILQVFEEISCSVNTTAAGGNASLMAVAD"
BASE COUNT         2796 a         3517 c         2948 g         2762 t
ORIGIN      
        1 caatatatag tattaagata aagccatgac agcacccgta ccaacgtgta atatgtcggg
       61 aaatccaata aatttacaca agctaacact tatcatgccc ctccccctcc cctctcccga
      121 agcacggcaa ttctcgctca aactgcaaac cctcattgcc gaagaaatcg gcaaacacgg
      181 caactggatt ccattttcac gttttatgga attggtttta tacgctccgc aatacggcta
      241 ctacaccggc ggcagccata aaatcggcaa taccggggat tttattaccg caccgaccct
      301 cacctctctg tttgcacaga cactggcacg ccaacttcaa gaacttctat cccaaacggc
      361 gggcaatatc tatgaattcg gcgcgggaac cggacagctt gccgccgatt tgttgggcag
      421 catttcggac ggcatcagcc gttactatat tattgaaata tcgccggagc tggcagcacg
      481 tcagaaaaac ctgattcaag cacgcgcacc ggaagcatct caaaaagttg tccacttgac
      541 cgcacttccc gaagcgtttg acggcatcat catcggcaac gaagtactcg atgccatgcc
      601 tgtcgaaatc gtccgtaaaa atgaaggcgg ctcattcgag catgtcggcg tttgcctaga
      661 taatgaccgt tttacctatt cggcacgacc gctgcacgac ttacagctat ctgccttggc
      721 ttccctctat tttcctcaaa cagattatcc ctacaccagc gaactacatc cgcaacaata
      781 tgcctttatc cgcacccttg cctcaaggct tgaacgcggg ggtatgatat tcatcgacta
      841 cggttttgat gcagcgcagt attaccaccc tcaacgcaat caaggtactc tgatcggaca
      901 ctaccgacat cacgttatcc acaatccttt tgacttcatc gggttggccg acctgaccgc
      961 gcatgtcaac tttaccgaca ttgcccaagc cggtacggat gcaggactgg atttgacagg
     1021 ctatctgccc cagtcccatt ttctgctgaa tctgggcata accgaactgt tggcacaagt
     1081 gggaaaaaca gactcgcccg cctacatccg tgaagctgct gccgttcaga aactgattga
     1141 ccagcatgaa atgggagaat tgtttaaagt catcgcattc ggtaaaaata tcggcgtcga
     1201 ctgggcagga ttccgcttcg gcgacatctg ccacaaactc taaccctcat gccgcctgaa
     1261 tccgcttcag acgacataaa ctttttaaca tttaaaaaca gtcaactaat tcaaaattaa
     1321 aaaatacggc ttgtcaaaaa aacagaaaaa catataatag cgtcttcacg aaacggcgaa
     1381 ttagctcagt cggttagagc agaggaatca taatccttgt gtccggggtt cgagtccctg
     1441 attcgccacc aaattttcgg gggtatagct cagttggtag agcgcttgca tggcatgcaa
     1501 gaggtcagcg gttcgatccc gcttacctcc accagataaa aaagcacaga ccgtaaaaag
     1561 gtatgtgctt ttttattgcc tgattgccag caaataaaga ataaaccact gccttcaaaa
     1621 caggcaatcg actttaaacc tatcgccccg cctgtcctga ttttatagtg aattaaattt
     1681 aaaccggtac agcgttggct cgccttgccg tactatctgc ggcttcgtcg ccttgtcctg
     1741 atttttgtta attcactata tcagcccgcc aaacaaaccc gacccgaata atgtcttcag
     1801 gtcgggttta tggtttcatt cccaacttat ccagcctgac agccacaata taatgatggc
     1861 aatgccaaaa acaatgcggt aataggcaaa aggaatataa tttttcttgg aaacaaacct
     1921 cagcaacgct tttaccgcca ccaaaccgga aacaaaagcg gcaacaaagc caatcagaat
     1981 caaaccgaca tcatgcaggg tgaaaaaccg gtaatgcttc aggacatcat aagccgttgc
     2041 tgcaaccatc atcggaacgg ccaagaaaaa tgaaaactcc gttgccgttt tccgctcgat
     2101 tccccaaagc atcccgccca taatcgtact gcccgaacgg gacgtacccg gaaccagtgc
     2161 aaacacttgg gcaacgccga tcatcaacgc atcaatcgga cgcaatgcat caacatcgac
     2221 aattttaggc tctgcccggc tttggcgttt ctccacccac aaaataaaaa aaccgcccaa
     2281 aaccagcatg actgcaacac tcaaggggtt aaacagatac tctttgattt gtttgccgaa
     2341 caacagcccc atcacggcgg caggtataaa agcaatggca agattaagga cgaaacggtt
     2401 ggctttccgg tcttttccca cgccatgcaa cacattgctg aaacgctgcc ggtattcaaa
     2461 cactaccgcc aaaaccgcac cgagctggat ggtaatttca aaaaccttgt gattgctgtg
     2521 aaaatcaatc agattgccga acacaatcaa atgtccggtg ctggaaatcg gtaaaaattc
     2581 ggtaaaacct tctaccaagc ccatcatcag ggctttcagg acaatcagaa aatccattgc
     2641 ttgcgcttct ttcggatacg ggagttcggc tatttctgta cagcaggggt ctgacgcttg
     2701 cgttcttccc tgactttggc aaccaattct ttaatcgtat gaacaccgcc gtcaaagcca
     2761 ttattgaaga taacgcggta ttttccgccg acgacaacgg tcggcgtact gtcgatgcgg
     2821 tactgttccg tcaattgctg catttttgat gcagcagccg ctgccgcagg agagtcgtag
     2881 gcgcgcatca gttttttgcc gtcaaagcct ttttgagaca aagcccattt ttcggcaacc
     2941 gacctgtttt ccaagcggat tttttgttcg taaactgctt taaacacggc agggtttgcc
     3001 tgatatttca aacctgacag cttgaccgca gcagccattc ttgccagacc gagcatttca
     3061 ggctgccaga ccacgtgctc cgtccttaaa taggcatcag acggcaatgc cttgcccaat
     3121 ttcaataaca aaggatcgaa atgatggcaa tgtacgcaga aatagccgaa aaattccaaa
     3181 acctcaattt tgcccgactg tttttgagga atgggtttat ccaacacaag atagtcttcc
     3241 ccttccgtca gggcatatgc ctgcgcggac aacactgccg acagcagcag cggcaacaga
     3301 tgtttgagct tcataattat ttactttcga tagaacggat caggctggcg acttcatgtt
     3361 ttttcaactc gtcctgcatt tttttcaccg catcggcaga catattgccg ctttgcaccc
     3421 ggtaaagcgt tttatgtccc gcctgatagc cgaccacctt ggaagatatg cccaagattg
     3481 ccagtttggc acgctgccct tccgcgctcc ggcggtcggc atacgcgccc atttgcagat
     3541 aatgcgttgc ttccgccttg tcggacgttt tcattttctg cacttctttg gcggcggcac
     3601 tgcgcgcttt ttcgatgctg ccgctgttga ggatttgttc cggggtcggt ttgggtgcaa
     3661 ctttttcctt ttccgccttt ttctcttctt ttggagcttt tttctctgtt tctttagacg
     3721 gttttaccgc ttgtttttta accgtttcgg catctttctt ctgcgctttt tctctgacgg
     3781 tttgttcacg ctcttccgtc agcactttct tacgcactgc ctgtccgtcc gacttttccc
     3841 gctccggctc gcccgccttt tcttcaacct cgtcggcttt atcggcagct ttttccgcat
     3901 ccgactgctc tgcctctgtc gcagcatccg gttcggacaa ggcgttttga tcggccggtt
     3961 caggttggat gtcttcctta ggctggtttt tcggtttcag gatttccgtt tctgcaggct
     4021 gcttcgacga agccgggatt ttgaacgcat tttgaccgct ctggttcaga taaaacaaaa
     4081 taccggcaat aatgaccgtc gccagtatca aaccgaagaa aaaaccggac agaccttttc
     4141 cggattggga aaatttgttc ataaacatac cttaatgtgt ttcagacggc attaacgccg
     4201 tttgcttacg ggcggatatt ctaacaatat cgccatattt gggcaaaacc tgcttccatt
     4261 cccattccta taaagcacga cggaaaccta tggctttcat gacgtggctt ctgccgactt
     4321 cttcgtcgcc agccaaatcc gccaatgtac gcgccacgcg catgatgcgg tggaagctgc
     4381 gggcggaaag ggagagtttt tccagcaggc cgcccaatgc ttcctgcgct tctttttgga
     4441 tgcaggcttg ggaatcgagt tcgctgacgc tcaaagcggc gttgactttg ccctgccgtg
     4501 cgtattgttt gtcgcgggcg gcgataacgc gttccaaaac ggacgcgctg ctttcgcccg
     4561 cttcctgctg catcagttcg gcggcggaca ggctggggac ttcgatggtc aaatcgatgc
     4621 ggtcgagcag cggcccggaa atcttgctgc ggtaacgcgc gacgctttcg ggcgtgcagc
     4681 ggcagggttt gacgggatgc ccgagataac cgcacgggca ggggttcatg gcggcaacaa
     4741 gttggaattt ggcaggatag acggcttggc gcgccgcgcg ggaaatgtgg atttcgccgt
     4801 tttccaacgg ttcgcgcaaa acttccaaaa ctttgcggtc gaactcgggc agctcgtcca
     4861 aaaacaatac gccgtggtgc gccaatgaaa tctcgcccgg acgcgggtcg gaaccgccgc
     4921 cgaccatagc cgccgcgctg gcgctgtgat gcggactgcg gaaaggacgg ttgctgtcga
     4981 gttgttgctg gtggttgggc aggagcgaac gcaatgccca aacttctacc aattcgtctt
     5041 cggtcagcgg cggcaggatg ccgggcagcc gttgggagag catagacttg cccgttcccg
     5101 gcggacccat catcaagagg ctgtgtccgc ctgcggcagc gatttccaaa gcaaggcgcg
     5161 cggtgtgctg acctttcaca tcgcacaaat caggttgtcc gccatgttca aacggcatct
     5221 gaggaacttg gcattcggtt tgcgccaaag gttcgatgcc gttcaaatgg gcggcgactt
     5281 cgcccaaaga gcgcgcgccg taaacggtaa tgccgcgcat cacggcggct tgtcctgcat
     5341 tttcttcagg caaaacaaat gcacgttttg cctgcatacc ctgccacgcc atcgccaacg
     5401 cgccgcgcac ggggcgcaac agccccgaca gtgccaattc ccccgcaaac tcgtattccg
     5461 ccagtttttc gggcgcaacc tgccccgatg cggcaaggat gccgattgca atcggcaaat
     5521 cgaaacgccc cgactctttg ggcaggtcgg cgggggcgag gttgacggtg atttttttgg
     5581 cggggaattc aaaaccgctt tgaataatgg cggcacggac gcggtcgcga ctttctttga
     5641 cttccgtatc gggcagcccg acgatgttga aatgcggcag accgttggca aggtgggctt
     5701 ccacttcgac caacggcgca ttcataccgc tcaaggcgcg gctgtaaacc aaggcaagcg
     5761 acatatttca gacggcctta ttcgccggct tcggtttgct gcctgatttc ggcgacggct
     5821 tcttcggcag cggcttcagc cgcttccaat gctgcccgtt cgggattttg cgcggcttcg
     5881 agttttgcca aacgcgcttc caaagccgcc agtttggtac gggttttgat taaaacctgc
     5941 tgctggatgt cgaattcttc gcgcgtaacc agatccatac ggttgaacgc gccgcccagc
     6001 atcgccttaa tatttttttc cacatctttg gcagggctgt tggcgatggt ttcgctgatt
     6061 ttcgagccga cttcctcaaa aagctgcttg ccgaacataa tctgtatcct tcctgaacat
     6121 atcaaattca atcggctatt gtataaggaa aaatgccgtc tgaaaacggg cggcggataa
     6181 tcggcaaaac ataccgcgcc tcctttgcgg ttgctaaatt acacctcaaa acacctgccg
     6241 cctgaaaacg gatttcatat tccgcgcaac gcctgattac aagacactac aaaacaatat
     6301 gctgttttaa atgatttttc cgacgcgcat cgtttcaaac tcggcttttt aagccattaa
     6361 gtgctttgca aacaacagaa attgggttat gctgaaacgg attatttaca atttcatata
     6421 gttttattac atatcttatt gtgattgaag ataatttatc cgaatccccc tttcgggtat
     6481 ccggattttc cgttgtactt ttattagaaa aacatttcag gcgcaagttg cttgcaattt
     6541 caaagcctgt aattctgaag ttttagacga ggaatagcac atgaatccca tgtacattac
     6601 ttttgcaatc tatctggttg cagtccttct catcgggctt gccgcctatt tttctacgcg
     6661 caatttcgac gattatattt tgggcgggcg cagcctaggc ccgtttgtta ccgcgatgtc
     6721 ggcaggcgcg tccgatatgt ccggctggct gctgatgggt ctgccgggcg cgatttacct
     6781 gagcggtttg aatgaggctt ggattgccat cggcctcttg gtcggcgcgt atttcaactg
     6841 gctcttggtg gcgggccgcc tgcgcgtgca taccgaatac gccaacaatg cgctgacgct
     6901 gccggattat ttcttccacc gcttcggcgc gggcggacac ttgatgaaag tggtttccgc
     6961 actgattatc ctgttcttct tcacgattta ttgcgcctcg ggcattgtgg cgggcgcaac
     7021 cctgttccaa agcctgtttg aaggtatgac ttacaatcag gcaatgtggc tgggcgcggg
     7081 cgcgaccatc gcctatacct tcttgggcgg cttcttggcg gtcagctgga cggatacgct
     7141 gcaggcttct ttgatgattt tcgccctgat tttaacgccg gtgatggtct atctgggctt
     7201 gggcggcgcg gaacagatgt ctgccgcgat tcaaagcgtc gccgcaggca cgggcaaaga
     7261 atacggcagc ctgtttgccg gtacgaccgt catcggcatc atttccaccg ccgcatgggg
     7321 cttgggctat ttcggacagc cgcacatttt ggcgcgcttt atggcggccg aaagcgcgaa
     7381 atcgctggta tccgcacgcc gcatcggcat gacttggatg gcgttgtgcc ttgcgggcgc
     7441 ggtggcggtc ggttatttcg gcattgcgta tttcggtgca aatcccgaca aagtttcttc
     7501 tatgagcggc aaccacgaac gcatcttcat cgcgctttcc accctgctgt tcaacccttg
     7561 gatcgccggc atcattttga gcgcgatttt ggcggcggtg atgtccaccc tgtcctgcca
     7621 gcttttggtt tgctccagcg cgattaccga agacttctac aaaggctttt tgcgtaaaaa
     7681 cgcgcaacag tcggaactgg tatgggtcgg ccgcctgatg gtcttggcga ttgccgtgat
     7741 ttccatcctg attgcttccg atccgaacag caaagtattg ggactggtgt cttatgcgtg
     7801 ggcaggtttc ggtgcggcgt tcggcccgat tgtgattctg tccgtattgt ggaaacgcat
     7861 cactgcctac ggcgcgttgt cgggtatggt tgcaggtgcc ttaaccgtag tcgtatgggc
     7921 ggaatgggta aaaaaaccgg ctcaagcggc aggcgaaagc ggcttgttga cgatgtacga
     7981 aatcgtcccg ggctttattg tttgcttaat cgtcgccgta ttggtttccc tgttcaacaa
     8041 agaaccttcg cgcgaaaccc aagaacgctt tgaaaaagcc gacgcagatt accgcgccgc
     8101 ccgataaacc cctttcagac ggcacggcat cccggttcgt gccgtctgaa cccgtttccg
     8161 ggtcaaacac aaataaacct tgcctgcata caggccttat ttgtgtttta cccgtttcat
     8221 tttcaaagaa acggaagcac ctaccctgcc cgcatttgaa gccttgtatt tcatctgcgg
     8281 atttattacg atattaccgt attcaggccg caccgatgcc gcctgccccc cgaaaaactt
     8341 tggagaatcc aaaaaatgtt tcattttgca tttccggcac aaactgccct gcgccaagcg
     8401 ataaccgatg cctaccgccg taatgaaatc gaagccgtac aggatatgtt gcaacgtgca
     8461 cagatgagcg acgaagagcg caacgccgcc tccgagcttg cccgccgttt ggttacccaa
     8521 gtccgcgccg gccgcaccaa agccggcggc gtggatgcgc tgatgcacga attctcactc
     8581 tccagcgaag aaggcatcgc actgatgtgt ctggcggaag ccctgctgcg tatccccgac
     8641 aacgccacgc gcgaccgcct gattgccgac aagatttcag acggcaactg gaaaagccat
     8701 ttgaacaaca gcccttccct cttcgtcaat gctgccgcct ggggcctgct gattaccggc
     8761 aaactgaccg ccacaaacga caaacaaatg agttccgcac tcagccgcct gatcagcaaa
     8821 ggcggcgcac cgctcatccg ccaaggcgtg aattacgcca tgcgcctgtt gggcaaacag
     8881 ttcgtcaccg gacagaccat tgaagaagcc ctgcaaaacg gcaaagaacg cgaaaaaatg
     8941 ggctaccgct tctccttcga tatgttgggc gaagccgcct acacccaagc cgatgccgac
     9001 cgctactacc gcgactatgt cgaagccatc cacgccatcg gcaaagatgc ggcaggacaa
     9061 ggcgtttacg aaggcaacgg catttccgtc aaactctccg ccatccatcc gcgctactcg
     9121 cgcgcccaac actgccgcgt gatgggcgaa ctgttgccgc gcctgaaaga gctgttcctt
     9181 ttgggcaaaa aatacgatat cggtatcaac atcgatgccg aagaagccaa ccgcttggag
     9241 ctgtctttgg atttgatgga ggctttggtt tcagaccctg acttggctgg ctacaaaggt
     9301 atcggtttcg ttgtccaagc ctaccaaaaa cgttgtccgt tcgttatcga ctacctgatt
     9361 gacctagccc gccgcaacaa ccaaaaactg atgatccgcc tcgtcaaagg cgcgtattgg
     9421 gacagcgaaa tcaaatgggc gcaagtggac ggcttgaacg gctatccgac ctacacccgc
     9481 aaagtccaca ccgacatctc ctacctcgcc tgcgcgcgca aactgctttc cgcgcaagac
     9541 gcggtattcc cgcaatttgc cacgcacaac gcctacacct taggcgcaat ctaccaaatg
     9601 ggcaaaggca aagactttga acaccaatgc ctgcacggca tgggcgaaac cctgtacgac
     9661 caagtcgtcg gcccgcaaaa cttaggccgc cgcgtgcgcg tgtacgcccc ggtcggcaca
     9721 cacgaaaccc tgctcgccta cttggtgcgc cgcctgttgg aaaacggcgc gaactcgtct
     9781 ttcgtcaacc aaatcgtcga tgaaaacatc agcatcgact gcctgattaa gagcccgttc
     9841 gacaccatcg ccgaacaagg catccacctg cacaacgccc tgccgctgcc gcgcgatttg
     9901 tacggcaaat gccgtctgaa ctcgcaaggc gtggacttga gcaacgaaaa cgtattgcag
     9961 cagcttcaag aacagatgaa caaagccgcc gcacaagact tccacgccgc atccatcgtc
    10021 aacggcaaag cccgcgatgt cggcgaagcg caaccgatta aaaatcctgc cgaccacgac
    10081 gacatcgtcg gcacagtcag ctttgccgat gccgcgcttg cccaagaagc ggttggcgca
    10141 gccgttgccg cgttccccga atggagtgcg acacctgccg ccgaacgcgc cgcctgcctg
    10201 cgccgtttcg ccgacctgct cgaacagcac acccccgcgc taatgatgct tgccgtgcgc
    10261 gaagcgggca aaacgctgaa caacgccatt gccgaagtgc gcgaagccgt cgacttctgc
    10321 cgctactacg caaacgaagc cgaacacacc ctgcctcaag acacaaaagc cgtcggcgcg
    10381 attgtcgcca tcagcccgtg gaacttcccg ctcgccatct ttaccggcga agtcgtgtcc
    10441 gcattggcgg caggcaacac cgttatcgcc aaacccgccg aacaaaccag cctgattgcc
    10501 ggttatgccg tttccctcat gcacgaagcc ggcatcccga cttccgccct gcaactcgtc
    10561 ctcggcgcag gcgacgtggg tgcggcattg accaacgatg cccgcatcgg cggcgtaatt
    10621 ttcaccggct cgaccgaagt ggcgcgcctg atcaacaaag cccttgccaa acgcaacgac
    10681 aatcccgtcc tgattgccga aaccggcgga caaaacgcca tgattgtcga ttccaccgca
    10741 cttgccgaac aagtctgcgc cgacgtattg aactccgcct tcgacagcgc gggacaacgc
    10801 tgctccgccc tgcgtatctt gtgcgtccaa gaagacgttg ccgaccgtat gctcgacatg
    10861 atcaaaggcg cgatggacga actcgtcgtc ggcaaaccga ttcaactcac caccgatgtc
    10921 ggctccgtca tcgatgccga agcgcagcaa aacctgttga accacatcaa caaaatgaaa
    10981 ggcgttgcca agtcttacca cgaagtcaaa accgctgccg atgtcgattc cgaaaaatcc
    11041 acgttcgtcc gccccatcct gtttgaattg aacaacctca acgaactgca acgcgaagtc
    11101 ttcggtcccg tcctgcacgt cgtccgctac cgcgccgacg aactcgacag cgtcatcgac
    11161 caaatcaaca gcaaaggcta cgccctgacc cacggcgtac acagccgcat cgaaggcacg
    11221 gtacgccaca tccgcagccg catcgaagcc ggcaacgttt acgtcaaccg caacatcgtc
    11281 ggcgcagtcg tcggcgtaca gcccttcggc ggacacggtc tgtccggcac aggtcccaaa
    11341 gcaggcggtt cattctacct gcaaaaactg acccgcgccg gcgaatgggt tgccccgacc
    11401 ctgagccaaa tcggacaggc ggacgaagcc gcactcaaac gcctcgaagc actggttcac
    11461 aaactaccgt tcaacgccga agagaaaaaa gccgcagcgg ccgctttggg acacgcccgc
    11521 atccgcaccc tgcgccgtgc cgaaaccgtc cttaccggac cgaccggcga gcgcaacagc
    11581 atctcatggc acgcgcccaa acgcgtttgg atacacggcg gcagcctcct gcaagccttc
    11641 tgcgccctaa ccgaacttgc cgcctccggc gtacaggcag tggtcgaacc cgacagcccg
    11701 ctggcttcct acaccgccga cttggaaggt ctgctgctgg tcaacggcaa acccgaaacc
    11761 gccgacatca gccacgttgc cgccctgtcg cctttggaca gcgcgcgcaa acaggaactt
    11821 gccgcccacg acggcgcact catccgcatc ctcccttcgg aaaacggact cgacatcctg
    11881 caagtgtttg aagaaatctc ttgcagcgtc aacaccacag ccgccggcgg caacgccagc
    11941 ctgatggcgg tcgccgactg attttaccga aatccccggg cgcgggccgt gaaccaatgc
    12001 cgtctgaaaa cctttcagac ggc
//
LOCUS       DAXIFD010000050        11954 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.050, whole genome shotgun sequence.
ACCESSION   DAXIFD010000050 DAXIFD010000000
VERSION     DAXIFD010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11954
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.050"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..108
                     /locus_tag="ACFOCN_000950"
     CDS             <1..108
                     /locus_tag="ACFOCN_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6970118.1"
                     /translation="KYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILQK"
     gene            1029..1607
                     /locus_tag="ACFOCN_000951"
     CDS             1029..1607
                     /locus_tag="ACFOCN_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017147256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6970119.1"
                     /translation="MHYNPVAYGKIKVQSWKERRDFNIVKQDLDFSCGAASVATLLNN
                     FYGQKLTEEDVLKKLDKEQMPASFEDMRRIMPDLGFEAKGYALSFEQLAQLQIPVIVY
                     LKYRKDDHFSVLRGIDGNTVLLADPSLGHVSMSRAQFLDAWQTREGNLAGKILAVVPK
                     GRDAGGDKAFFTRSPKRQTEFAVGQVKWWRAY"
     gene            1737..3398
                     /locus_tag="ACFOCN_000952"
     CDS             1737..3398
                     /locus_tag="ACFOCN_000952"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HFC6970120.1"
                     /translation="MTESITRDSMQYDVVIVGAGPSGLSAAIKLKQLAEQNGREISVC
                     VVEKGSEAGAHSLAGAVIDPIALNELIPDWKEKGAPLTRTVTQDKVLFLTEKKAFNLP
                     ITPNFDNHGNYIVSLGEVVRWLAEQAENLGVEIYPGFAAAEVLYHKDGSVKGIATGNM
                     GVGKNGEPTDSFQPGMELWARQTLFAEGCRGSLSKQIIERFKLDQNSQPQTYGLGIKE
                     VWEVPSEQHQPGLVVHSAGWPLDSKTYGGAFVYHFDDNKVAVGFVVGLDYQNPYLSPF
                     EEFQRFKTHPEIRKTFEGGRRIAYGARSLIEGGFQSLPKLSFKGGVLVGDAAGFLNMP
                     RIKGIHTAMKSAMLAAEAVFPLLENLEEVENFDSGKEAADYQQRFEQSWLYQELYAAR
                     NVRPSFKWGVYLGSIYTGIDQMIFRGKAPWTLKHHGKDNEQLKKAAACKPIDYPKPDG
                     VLTFDRLSSVFLANLAHEENQPDHLVLNNPQTMIDVNYKEYASPETRYCPAGVYEIVE
                     ENGSPRLQINAANCVHCKTCDIKDPTQNITWICPESASGPNYGGM"
     gene            complement(3532..4026)
                     /locus_tag="ACFOCN_000953"
     CDS             complement(3532..4026)
                     /locus_tag="ACFOCN_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase accessory protein NosL"
                     /protein_id="HFC6970121.1"
                     /translation="MKKTLLAIVAVSALSACRQAEEGPPPLPRQISDRSVGHYCSMNL
                     TEHNGPKAQIFLNGKPDQPVWFSTIKQMFGYTKLPEEPKGIRVIYVTDMGNVTDWTNP
                     NADTEWMDAKKAFYVIDSGFIGGMGAEDALPFGNKEQAEKFAKDKGGKVVGFDDMPDT
                     YIFK"
     gene            complement(4023..4154)
                     /locus_tag="ACFOCN_000954"
                     /pseudo
     CDS             complement(4023..4154)
                     /locus_tag="ACFOCN_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(4249..4863)
                     /locus_tag="ACFOCN_000955"
                     /pseudo
     CDS             complement(4249..4863)
                     /locus_tag="ACFOCN_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709597.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            complement(4921..6120)
                     /locus_tag="ACFOCN_000956"
     CDS             complement(4921..6120)
                     /locus_tag="ACFOCN_000956"
                     /inference="COORDINATES: protein motif:HMM:TIGR04247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
                     /protein_id="HFC6970122.1"
                     /translation="MASGVYQTKLYIDKPITIEGPADRSATIEGDRSGRTIAVHAPDV
                     TLRNLTVTRSGMSLPAMDAGIYLEETAPRALIEHNNILDNSVGVYLHGSADAMVRENK
                     IVGDATLRVNERGNGVTVWNAPGAQVVGNDISKGRDGIFSNTSTHNTYKNNRFSDLRF
                     AVHYMYTNDSEISGNISVGNNMGYVLMFSERLKVFDNIAVGSRDQGIMLNYVNYSDIH
                     DNIINKAGKCVFAYNANYDKLSANHFENCQIGIHFTAAIEGTSLHDNSFINNESQVKY
                     VSTRFLDWSEGGHGNYWSDNSAFDLNGDGFGDSAYRPNGIIDQIIWRAPVLRLLMNSL
                     AISIVKWAQAQFPAVLPGGVVDSKPLMKPYVPKIQTRYQAMKDELLKEAETRQSEWGR
                     AENGSLN"
     gene            complement(6009..6530)
                     /locus_tag="ACFOCN_000957"
     CDS             complement(6009..6530)
                     /locus_tag="ACFOCN_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NosR"
                     /protein_id="HFC6970123.1"
                     /translation="MSCFSIKRMSAFRARITVFFTAFVFLTAALPAYAERLPDFLAKI
                     QPSEIFPGADRYGKPEGKPMVARVYKGDEQLGLVYITTDAVNTRGYSNKPIDTLMALA
                     NDGTIAGAKLVDHHEPIMLIGIPHLPAPMRAIRSNWLPAYIKPNFISTNRLRLKGLLT
                     VLQPSKETGADVR"
     gene            complement(6857..8104)
                     /gene="hemA"
                     /locus_tag="ACFOCN_000958"
     CDS             complement(6857..8104)
                     /gene="hemA"
                     /locus_tag="ACFOCN_000958"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HFC6970124.1"
                     /translation="MQLTAVGLNHQTAPLSIREKLAFAAACLPEAVRNLARSNAATEA
                     VILSTCNRTELYCVGDSEEIIRWLADYHSLPIEEISPYLYTLGMQETVRHAFRVACGL
                     DSMVLGEPQILGQIKDAVRVAQEQESMGKKLNALFQKTFSVAKEVRTDTAVGENSVSM
                     ASASVKLAEQIFPDIGDLNVLFIGAGEMIELVATYFAAKSPRLMTVANRTLARAQELC
                     DKLGVNAEPCLLSDLPAILHEYDVVVSSTASQLPIVGKGMVERALKQRQSMPLFMLDL
                     AVPRDIEAEVGDLNDAYLYTVDDMVNIVQSGKEARQKAAAAAETLVSEKVAEFVRQQQ
                     GRQSVPLIRALRDEGEKARKQVLENAMKQLAKGATAEEVLERLSIQLTNKLLHSPTQT
                     LNKAGEEDKDLVHAVAQIYHLDK"
     gene            complement(8256..8642)
                     /gene="gcvH"
                     /locus_tag="ACFOCN_000959"
     CDS             complement(8256..8642)
                     /gene="gcvH"
                     /locus_tag="ACFOCN_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005960 - glycine cleavage complex
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HFC6970125.1"
                     /translation="MSSNIPAELKYVASHEWLRLEEDGIITVGITHHAQELLGDIVFV
                     ELPEVGANLAAEEQAGVVESVKAASDVYAPIAGEVVAVNEDLPSAPETANSDPYGAGW
                     FFKLKPANVADYDVLLTAEQYAGEVD"
     gene            complement(8805..9905)
                     /gene="gcvT"
                     /locus_tag="ACFOCN_000960"
     CDS             complement(8805..9905)
                     /gene="gcvT"
                     /locus_tag="ACFOCN_000960"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HFC6970126.1"
                     /translation="MITLKTTPFHQAHQDAGAKPVDFAGWELPIHYGSQIAEHEAVRT
                     DAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLI
                     VYRTNEAETQYRIVSNGATREKDTAQFHKVGQEFGVSFNPRYDLGMLAVQGPKAIEKL
                     LTVKPEWADVVHNLKPFQGADLGNDWFVARTGYTGEDGVEVILPGTEAVAFFKALQAA
                     GVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESRDFVGKAALLA
                     LKEKGVAVKQVGLLLGKGGILRAHMEVLTDKGKGETTSGVFSPSLKQSIAIARVPNDF
                     DGDTAKVLIRGKEADVRVLKLPFVRNGQKQFD"
     regulatory      complement(10116..10213)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            10417..10899
                     /locus_tag="ACFOCN_000961"
     CDS             10417..10899
                     /locus_tag="ACFOCN_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HFC6970127.1"
                     /translation="MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLK
                     QLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFAL
                     TGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
                     "
     gene            10946..11551
                     /locus_tag="ACFOCN_000962"
     CDS             10946..11551
                     /locus_tag="ACFOCN_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HFC6970128.1"
                     /translation="MTIMNINTSENKDAVAEHTGQWLEKAVIGLNLCPFAKAPHVKNL
                     VRIAISEAKHLDSFLEDLDEELQRLGNTPATELETTLLVHPTLFPDFDVFNDMLDIAD
                     AAVIENGLEGIVQIAPFHPQFRFQNTEPDDIGNYTNRSPYPTLHLIREDSIAKAAQAF
                     PDASAIFERNIALLEKMGHEGWAKLGITSCPYPHNKKNISK"
     gene            11548..11907
                     /locus_tag="ACFOCN_000963"
     CDS             11548..11907
                     /locus_tag="ACFOCN_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HFC6970129.1"
                     /translation="MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASP
                     RFHRWLHRHRYFGPMVHNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVS
                     SVFCSLVAIWMWRRPES"
BASE COUNT         2797 a         3138 c         3096 g         2923 t
ORIGIN      
        1 aaatacaacg gaatcgatcg taaatctttc ccgctgttct tgaaagaatg cgaatttcga
       61 tttaacttcg gcacaccgtc tcaacagctt aaaatcctgc aaaaatgatg tggaatttag
      121 ggctaatcta gtacagcccc ttagatttaa ttcactatac ctgcgtaatg gtatcgggta
      181 ctcatcatca acctgccttg cattcggttg tgttgtccgg caactgtccg gttgtgtcga
      241 tgggttgccc tgccgctccc tgtgctacgc aacggttgtg tgccttgggt gggcgcgggt
      301 ggcggccggg cggtttgttg ctatgatacg ggagttccga tatacaaggg tgggcttcag
      361 cccaccaatc aacgaccgaa aaagaaaaaa cgttgggctg aagcccactc tacgcaatta
      421 cgcaactgtt atcgtgggga tgacgggatt ttaggttttt gtttttctgt ttttgcggga
      481 aggatgggtt ttaggttgcg gtcatttatc ggaaaagcag aaatcgctcc gccgtcattc
      541 ccgcgaaagc gggaatctga acacgtccgt agggaaacct atatcccgtc attcccacga
      601 aagtgggaat ctagaacctc tgaattttca gacaaccttt gaatattgcc gccgtcccgc
      661 gttctagatt cccgcctgcg cgggaatgac gattcatcag tttcccgaaa cgcccgaaaa
      721 accgaaaccg agcaaaccgg attcccgcct gcgcgggaat gacgatttat aagtttcccg
      781 aaacgcccaa aaaaaccgaa atccgacagg cgggattttt gctttcgtgg ggatgacggg
      841 attttaagtt acggtcattt atcggaaaag tagaaatcgc tccgccgtca ttccagcgaa
      901 ggcgggaatc tgaacacgtc cgcacggaaa cctatagtgg attaacaaaa atcaggacaa
      961 ggcgacgaaa ccgcagacag tacagatagt acggcaaggc gaggtaacgc cgtactggtt
     1021 taaatttaat ccactataat cctgttgctt atggaaaaat caaagtgcag agttggaaag
     1081 agaggcggga tttcaatatt gtaaagcagg atttggattt ttcctgtggg gcggcttcgg
     1141 tggcgacgct tttgaacaat ttttacgggc aaaagctgac ggaagaggac gtgttaaaaa
     1201 aactggataa ggagcagatg cccgcgtcgt ttgaggatat gcggcgcatt atgcctgatt
     1261 tgggttttga agcgaaaggc tatgccctgt ctttcgagca gcttgcacag ttgcaaatcc
     1321 ccgtcatcgt gtatctgaaa taccgcaagg atgatcattt ctcggtattg cgcggtatag
     1381 acggcaatac ggttttgctt gccgacccgt cgctgggtca tgtttcaatg agcagggcgc
     1441 agtttttgga tgcttggcaa acccgtgagg gaaatttggc aggtaagatt ttggcggttg
     1501 tgccgaaagg gagggatgcc ggcggggata aggcgttttt cacacgcagt ccgaaacgtc
     1561 agacggagtt tgcggtcgga caggtaaaat ggtggcgtgc ttattgaaat ttcgacaaag
     1621 gtcgtctgaa aaccgaaaat atggttttca gacgaccttt gttgtatttg gtaactatat
     1681 gttctcgttg tataattacg gatttgcaat tcaataataa atacacagga accgccatga
     1741 cagaatccat cacccgcgac agtatgcaat acgatgtcgt gattgtcggc gcaggcccat
     1801 cgggtttgtc cgccgccatc aaactcaagc agcttgccga acaaaatggg cgcgaaatca
     1861 gcgtttgcgt ggtggagaaa ggttcggagg cgggtgcaca ttcgctggcg ggcgcggtta
     1921 tcgatccgat tgcgctgaat gagttgattc ccgactggaa agaaaaaggc gcgccgctga
     1981 cgcgtacggt aacgcaggac aaagtgttgt tcctgactga gaaaaaagcg ttcaatctgc
     2041 ctattacccc aaatttcgac aatcacggca actacatcgt cagcttgggc gaagtcgtgc
     2101 gctggttggc ggagcaggcg gaaaatttgg gcgtggaaat ttatccgggc tttgccgctg
     2161 ccgaagtgct gtatcacaaa gacggttcgg tcaaaggcat tgcaaccggc aatatgggcg
     2221 tgggcaaaaa cggcgagccg accgattcat tccagcccgg catggagctt tgggcacggc
     2281 aaaccctgtt tgccgagggc tgccgaggtt cgctttccaa acaaatcatc gaacgcttca
     2341 aactcgacca aaacagccag ccgcaaactt acggcttggg cattaaagaa gtttgggaag
     2401 tgccgtccga acagcatcag cccggtttgg tggtgcacag cgcaggctgg ccgctggaca
     2461 gcaaaaccta cggcggcgcg tttgtttacc atttcgacga caacaaagtt gccgtcggct
     2521 tcgtggtcgg tttggactat caaaatcctt atctgtcgcc gtttgaagag ttccaacgtt
     2581 tcaaaaccca tcccgaaatc cgcaaaacct ttgaaggcgg ccgccgcatt gcttacggtg
     2641 cgcgttcgct gattgaaggc ggttttcaaa gtttgccgaa gctctcgttc aaaggcggcg
     2701 ttttggtcgg cgatgcggcg ggtttcctca atatgccgcg catcaaaggc attcataccg
     2761 cgatgaaatc cgccatgctc gccgccgaag ccgtgttccc cttgttggaa aaccttgaag
     2821 aagtggaaaa cttcgacagc ggcaaagagg cggcggatta tcagcaacgt tttgaacaaa
     2881 gctggctgta tcaagagctt tacgccgcgc gcaatgtccg tccgtcattc aaatggggcg
     2941 tttacctcgg ctcaatctac accggcatcg atcagatgat tttcagaggc aaagccccgt
     3001 ggaccttgaa acatcacggc aaagacaacg agcagcttaa aaaagccgcc gcgtgcaagc
     3061 cgattgatta tccgaaaccc gacggcgtat tgaccttcga ccgcttgagc agcgtcttcc
     3121 ttgccaatct cgcgcacgaa gaaaaccagc ccgaccattt ggtgctgaac aatccgcaaa
     3181 cgatgataga cgtgaactac aaagaatacg cctcacccga aacgcgctat tgtccggccg
     3241 gcgtgtatga aatcgtcgaa gaaaacggca gcccgcgcct gcaaatcaac gcggcaaact
     3301 gcgtgcactg caaaacctgc gacatcaaag acccgacgca aaacatcact tggatttgcc
     3361 ccgaaagcgc gagcgggccg aattacggcg ggatgtaaac cttattccgc cgttacgccc
     3421 ggtcaggaat aaggaatggg gcagttgttc aaacctgccc cgtttgaacc tatgacaaaa
     3481 aatgccgtct gaaccttggc ttcaacgttc agacggcatt tttgtttgga tttacttgaa
     3541 aatataggta tcaggcatat cgtcgaaacc gacaacctta ccgcctttat cctttgcaaa
     3601 tttctcagcc tgctctttgt tgccgaacgg cagcgcgtct tccgcaccca taccgccgat
     3661 aaagccgctg tcgatgacgt aaaaggcttt tttcgcatcc atccactccg tgtcggcatt
     3721 gggattcgtc caatcggtaa cattgcccat atcggtaacg taaatcacgc ggatgccttt
     3781 gggttcttcg ggcagcttgg tatagccgaa catctgcttg atggtggaga accaaacggg
     3841 ctgatcgggt ttgccgttca agaaaatctg ggctttgggg ccgttgtgtt cggtcaggtt
     3901 catactgcaa tagtgtccga ccgaacggtc gctaatctgc cggggtaaag gcggcggccc
     3961 ctcttccgcc tgccggcagg cacttaaggc ggaaacggca acaattgcca acagggtttt
     4021 cttcatattt gtcgctttct aaaaattccg gctgccaaaa caagcggaat gataacccat
     4081 aaaacctgag cggtcagcaa aacggggacg gtcaggctga tttgtccgct caaacccgcc
     4141 atacccgcat atagtggatt aacaaaaatc aggacaaggc aacgaagccg cagacagtac
     4201 aaatagtacg gcaaggcgag gtaacgccgt actggtttaa atttaatcca cgataatgcg
     4261 gtcggcgtgt ccgtccaact cggcaagggc gtgggtgctg agcaatacgg tcgcgccgcg
     4321 cccgttgagt tcgcgcacga cttcgtaaaa catttgtcgt gatgcagggt cgaggccggt
     4381 tgtcggttcg tcaaacagca ggactttggg ctcgcccagc agggcttgtg ccaaggcaag
     4441 gcgttggcgc atccctttag aataagtgcc gacgcggcgg tgtgccgcct gtgaaatgcc
     4501 gacgcgctca agcagccccc ggttctgcgt gagcggctgt tttttaagtt tggcataaaa
     4561 atccagcgtt tcgatgccgg tcagcgaagg gtgcagcgca acggtttcgg gcaggtagcc
     4621 gatttggctg cgaagccgcg cccccgcttt gctgccggta cgttcgccca aaagcatcac
     4681 ttcgccttcg gtcggggtaa tcagcccgag tatcagcttc ataatggtgg acttgcccgc
     4741 gccgttgtat ccggcaagcc cgacgctttc tcctgccttc aaaaccaaat cgacttggtt
     4801 gacggctttt tgcgccccga accgtttggt gacattcctc aattcgacat gatgtgtggt
     4861 catggttgtt ccttttgtgt tttcagacgg catttggatc cggatgccgt ctgaagcaga
     4921 ctagttcaaa gaaccgtttt ccgccctgcc ccattccgac tgccgtgttt cggcttcttt
     4981 gagcaactcg tccttcattg cctgatagcg ggtttgaatt ttggggacat aaggcttcat
     5041 cagcggtttg ctgtccacca cgccgccggg cagaacggcg ggaaactgcg cctgcgccca
     5101 tttgacgatg ctgattgcga gactgttcat caagaggcgc aatacgggcg cgcgccagat
     5161 gatttggtcg atgatgccgt tgggccggta cgcgctgtcg ccgaagccgt cgccgttcaa
     5221 atcgaacgca ctgttgtcgc tccaatagtt gccgtgtccg ccctcgctcc agtcgagaaa
     5281 gcgcgtgctg acgtatttga cctggctttc gttgttgata aaggaattgt cgtgcaggga
     5341 cgtgccttcg atggcggcgg taaagtgtat gccgatttgg cagttttcaa aatgattggc
     5401 ggacagttta tcgtagttgg cattgtaggc aaaaacgcac ttgcccgctt tgttgataat
     5461 gttgtcgtga atatcggaat agttgacata gttgagcatg atgccttggt cgcggctgcc
     5521 gacggcgata ttgtcaaaca ctttgagccg ctcggaaaac atcagcacat agcccatatt
     5581 gttgcccacg gaaatattgc cgctgatttc gctgtcgttg gtgtacatat agtggacggc
     5641 gaaacgcaaa tcgctgaagc ggttgttttt ataggtgttg tgcgtgctgg tattggaaaa
     5701 aatgccgtcg cggcctttgg aaatatcgtt gccgacgacc tgcgcgccgg gcgcgttcca
     5761 aacggtaacg ccgttgcctc gctcgttcac gcgcaaagtc gcatcgccaa caattttgtt
     5821 ctcgcgcacc atcgcatcgg cagaaccatg cagatatacg ccgaccgaat tatccaaaat
     5881 attgttgtgt tcaatcaggg cgcgcggggc ggtttcttcg agataaatac cggcatccat
     5941 tgcaggcagg ctcataccgg aacgggtaac ggtcaggttg cggagcgtta cgtccggcgc
     6001 atgcacagct atcgtacgtc cgctcctgtc tccttcgatg gttgcagaac ggtcagcagg
     6061 cccttcaatc gtaatcggtt tgtcgatata aagtttggtt tgatatacgc cggaagccag
     6121 tttgagcgta tcgcccgcat gggcgcgggc aaatgcggga taccgatcag cataatcggt
     6181 tcgtgatgat cgaccagttt cgctccggct atcgtgccgt catttgccaa agccatcagc
     6241 gtatcgatcg gtttgttcga ataaccgcgc gtattgaccg catcggtcgt gatatagacc
     6301 aagcccaact gctcatcgcc tttgtaaacg cgggcaacca taggcttgcc ttccggcttg
     6361 ccgtaacggt ccgcacccgg aaaaatttcc gaaggctgta ttttcgccag aaaatcaggc
     6421 agacgctccg cataagcggg cagtgccgcc gtcaaaaaga caaaggcggt aaaaaacact
     6481 gttatccgcg cccgaaacgc ggacatacgt ttgattgaaa aacaggacat gactatcccc
     6541 gatataccga tactctttaa tattgatatt atatgaatca tctatcggcg attttttgat
     6601 gcaaattaaa tttacaaatc ttaaaaccaa tccgcatacg ggataatata gtggattaaa
     6661 tttaaaccag tacagcgttg cctcgccttg ccgtactatc tgtactgtct gcggcttcgt
     6721 cgccttgtcc tgatttttgt taatccacta tactttgtga ttacatcgat ataatgtggg
     6781 atttcacgat gttgccggcc tgcacaaaaa atgccgtctg aaaccccttc agacggcatc
     6841 cttttccggc gcaccgttat ttgtccaaat gataaatctg cgcgacggcg tgaaccaaat
     6901 ctttatcttc ttcccccgcc ttattcaagg tttgggtcgg cgaatgcagc agcttgttgg
     6961 tcagttggat cgacagcctt tccaaaacct cttctgccgt tgcgcctttg gcaagctgtt
     7021 tcatcgcatt ttccaagacc tgtttgcgcg ctttctctcc ctcatccctc aatgccctga
     7081 ttaacgggac actctgcctg ccctgctgct gcctgacaaa ttcggcaacc ttctcggaca
     7141 ccagcgtttc ggcggcggcg gcggccttct gccttgcctc cttgccgctt tggacgatat
     7201 tgaccatatc gtccaccgta taaagatagg catcgttcaa atctccgact tccgcctcaa
     7261 tgtctcgcgg cacggccaag tcaagcataa acaacggcat actctgcctt tgtttcaatg
     7321 cgcgctccac catacctttg ccgacaatgg gcaactggct tgccgttgaa gaaaccacca
     7381 cgtcgtactc atgcaaaatg gcaggcagat cggacagcag gcacggttcg gcgttgacac
     7441 cgagcttgtc gcacaactcc tgtgcacgcg ccagcgtccg gttggcaacc gtcatcagcc
     7501 ggggactttt ggcggcaaaa taagtggcaa ccagctcaat catctcaccc gcaccgataa
     7561 acaagacatt caaatcgccg atgtcgggga aaatctgctc tgccaacttg acggaagcgg
     7621 aagccatgga aaccgagttt tcgccgacgg cagtatcggt acggacctct ttagcaacag
     7681 aaaaggtttt ttggaacagg gcattgagtt tcttacccat actttcctgc tcttgagcaa
     7741 ccctgaccgc atccttaatc tgtcctaaaa tctgcggctc gcccaacacc atcgaatcca
     7801 agccgcaggc gacgcggaaa gcatggcgca cagtctcctg catccccaaa gtataaaggt
     7861 aggggctgat ttcttctatg ggaaggctgt gatagtctgc gagccaacgg atgatttctt
     7921 ccgaatcacc tacacagtaa agctcggtac ggttgcaggt agaaaggatt accgcctccg
     7981 ttgccgcatt gcttcgggca agattgcgga cggcttcggg caggcaggcc gcggcaaacg
     8041 ccagcttttc ccgtatgctt aaaggtgcgg tttgatgatt gagtccgaca gcggtaagtt
     8101 gcatgaaaaa atcggtaaag atgaatatag accgttatta tagcctaact gcttccttaa
     8161 aacacggaca aaaaactgca cctccgaccg caaaaatgcc gtctgaaggt gcagtttccg
     8221 tttgtccggc ggttgccatc gggcagccgg gcggtttaat ccacttcgcc cgcgtattgt
     8281 tcggcagtca gcagaacgtc gtaatcggca acgtttgccg gtttgagttt gaagaaccag
     8341 cctgcaccgt aaggatcgct gttggcagtt tccggagcgc ttggcaaatc ttcgttgacg
     8401 gcaacgactt cacctgcaat cggtgcgtac acgtcggacg cggcttttac agactcaacc
     8461 acaccggctt gttcttcggc ggcaaggttt gcgccgactt caggcagctc gacaaacacg
     8521 atgtcgccca acagctcttg cgcgtggtgg gtaataccga cggtgatgat accgtcttct
     8581 tcaaggcgca gccattcgtg gctggcaacg tatttcagtt ctgccgggat gttgctgctc
     8641 atggtttgat actccattga tagggggtta ttttcagacg gcatctgcat gaatcaatat
     8701 ccacagatgc cttgttcaat gctttctaca aacgtccgta tcggacgaca attaaaacct
     8761 gctttcagac ggcatatgaa atgaaaatgc cgtctgaacc gatattaatc aaactgtttt
     8821 tgaccgttgc ggacgaacgg cagcttcagt acgcgcacgt ccgcttcctt gccgcgaatc
     8881 agcactttgg cggtatcgcc gtcaaaatcg ttcggtacgc gggcgatggc gatggattgt
     8941 ttcagacttg gagagaatac gccgctggtg gtttcgcctt tgcctttgtc ggtcaacact
     9001 tccatatgcg cgcgcaggat gccgcctttg ccgagcagca aaccgacctg tttgacggca
     9061 acgccttttt ctttcaatgc caacaaggca gctttgccga caaaatcgcg gctttcgtct
     9121 ttcaaatcaa cggtccaacc catgcctgct tcgagcgggc tggtatcgtc gtccatatcg
     9181 ttgccgtaga ggttcatgcc ggcttccatg cgcagggtgt cgcgcgcgcc gagaccgcaa
     9241 ggttgtacgc ctgctgcttg cagggctttg aagaatgcga cggcttcggt gccgggcagg
     9301 atgacttcga cgccgtcttc gccggtgtag ccggtgcggg cgacaaacca gtcgttgccc
     9361 aaatccgcgc cttggaacgg tttgaggtta tggacgacat ctgcccattc gggtttgacg
     9421 gtcaggagtt tttcaatggc tttagggcct tgtacggcga gcatgccgag gtcgtagcgc
     9481 ggattgaagg aaacaccgaa ctcttgtccg actttgtgga attgtgccgt atctttttcg
     9541 cgagtcgcgc cgttggacac gatgcggtat tgggtttcgg cttcattggt gcggtaaacg
     9601 atcaagtcgt caatcacgcc gccgttgtcg ttgagcaaag cggaataaag ggctttgccg
     9661 acaaaagcga gcttggcgac atcgttggca atcaatttgc ggaaaaaggc tttggcattt
     9721 gcgcctgcta cgtcggtaac aagcatatgg gatacgtcaa acataccggc gtcggtgcgc
     9781 acggcttcgt gttcggcgat ttgcgaacca taatggatgg gcagctccca gccggcaaaa
     9841 tctaccggct tcgcgcctgc atcttgatgg gcttgatgaa atggggtggt tttcagagta
     9901 atcattctca agtttctccg gattttttgt tcagatgcca cccgcgcacc tgtgcgcgga
     9961 tgaccctatc tgtccttgaa cctgagattt tcggccgtat ccgcatgatg gcaaaccagt
    10021 ctgctcactg ctttgcgcgg ttgtctgaat ggtggttcag acggccttct ccccttcggt
    10081 ggacgttatt ccaacgccgc tctccagatt gtttgtttca atgtgcagtc cctgatacct
    10141 gagcgattta agggtgtctg cgccttcggt ggttacattg tagttgggtg taacactctc
    10201 ctgcacattt cccgattatg tcttgaatcg gcggtttggg caagccgtct taaaagagat
    10261 gcaaaccgac cgcctctgtt ttcacatgat tttccgaaaa caaaatttgt cccggatgac
    10321 ggtataactt tttatatgtt aatatggtct ccatctgtgc ggattgccgc aaacatacgg
    10381 acagacaatc cgaattcctt aaaacggaac gcaaatatgc cccaactcac tttagacaaa
    10441 accgatatta aaatcttaca ggttctccag gaaaacggca ggctgaccaa tgtcgaactg
    10501 tccgaacgtg tcgcactttc gccttctccg tgcctgcgcc gtctgaagca gttggaagat
    10561 gccggcatcg tccgccaata tgccgcgctg ctgtctccgg aatccgtcaa cctggggctt
    10621 caggcattta tccgcgtttc catccgcaaa gcaaaagacg cgcgggaaga ctttgccgca
    10681 tcggttcgaa aatggcctga agtcttgagc tgcttcgccc tgacagggga aaccgactac
    10741 ctgcttcagg cgttttttac cgatatgaac gcgttttccc attttgtttt ggatacgctc
    10801 ctgtcccacc acggcgtaca agatgcgcaa tcgagctttg ttttaaaaga aatcaaacac
    10861 accacctccc tgccgctcaa ccacctgctg aaggaatagt gcccttcccg attttcccgc
    10921 acgtgcaatc tgcaaacaca tttacatgac aataatgaat atcaatactt ccgaaaataa
    10981 agatgctgtt gccgaacaca ccggacaatg gttggaaaaa gccgtcatcg gtctgaacct
    11041 gtgtcccttt gccaaagccc cccacgttaa aaaccttgtc cgcatcgcaa tcagcgaagc
    11101 caaacacctt gacagttttt tggaagactt ggacgaagaa ctgcagcgac tgggcaatac
    11161 acccgccacc gaactggaaa ccaccctgct ggttcacccg accctattcc ccgatttcga
    11221 cgtattcaac gatatgctcg atattgccga tgccgccgtt atcgaaaacg gcttggaagg
    11281 catcgtccaa atcgcaccgt tccatcccca attccgcttt cagaataccg aacccgacga
    11341 catcggcaac tacaccaacc gttctcccta tccgacgctg cacctcatcc gcgaagacag
    11401 cattgccaaa gccgcacaag cctttcccga cgcttcggca atattcgaac gcaatatcgc
    11461 cctgctggaa aaaatgggac atgaaggctg ggcaaaactc ggtatcacat cctgccctta
    11521 tccgcacaat aagaaaaata tttcaaaatg atacgttatc ttttaattgc ctgcggctgc
    11581 atctccctgc tgttgggtat catcggcatt tttttgccgc tgttgccgac cacgccgttc
    11641 gtactgctct ccgccgcctg ctgggcaaag gcatccccgc gctttcaccg ctggctgcac
    11701 cggcaccgct atttcggtcc gatggttcat aactgggaac aaaacggcgc agtgccgcgc
    11761 aaagccaaaa tattcgccat cagtatgatg accgcatcct gcctgataat gttttggcag
    11821 tttccccaac gctggtgggt cggggcggtt tcatcggttt tttgttccct tgtcgccata
    11881 tggatgtggc gcaggcccga atcttgaatg ccgtactgaa agggataagg gcaaacaaac
    11941 ggggggcaaa cctg
//
LOCUS       DAXIFD010000051        11906 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.051, whole genome shotgun sequence.
ACCESSION   DAXIFD010000051 DAXIFD010000000
VERSION     DAXIFD010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11906
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.051"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..663
                     /locus_tag="ACFOCN_000964"
     CDS             <1..663
                     /locus_tag="ACFOCN_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HFC6970130.1"
                     /translation="SSGNGTEQMKNLFGEKAFKNPKPEELIQDFITITTNESDIVLDY
                     HLGSGTTAAVAHKMNRQYIGIEQMDYIETLAVERLKKVIDGEQGGISKAVNWQGGGEF
                     VYAELAPFNETAKQQILACEDSDGIKTLFEGLCERYFLKYNVSVNEFSQIIQEPEFQS
                     LALDEQKQMVLEMLDLNQMYVSLSEMDDEQFAGCLNDDDKALSREFYQSAKNQAEKKD
                     GE"
     gene            653..3427
                     /locus_tag="ACFOCN_000965"
     CDS             653..3427
                     /locus_tag="ACFOCN_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HFC6970131.1"
                     /translation="MANNKTLFDWVEDRKSTLEEIEQTDFFALPEFVERNLKYPFFEW
                     QKSALENFVIFDRASKLKDFPDIKNRPTHLLFNMATGAGKTMMMAALILYYFEKGYRH
                     FLFFVNQNNIVDKTENNFIDPAHAKFLFTEKILQGDTVIPIRKVEMFSPHSDGIEIKF
                     TSIQKLYNDIHTERENQTTLADLHKLNLVMLGDEAHHLNAQTKGKKQDELDLEVELKA
                     NAGNAEIERKGWEHMVLELLLNKNGNPGQNVLLEFTATLPENADVQQKYADKIITKFG
                     LKEFLQKGYTKEINLVSSTLNKKERVLHALLFAWYRHQIALKYGIANFKPVMLFRSKT
                     IDESKADYSAFLNWAENVQADDFEFLDTFSGSLNNSDNANEQGKTRTEQALKFMQENG
                     FEFAHLANWVKQNYQKHNVIITNSETNKNKTEKTDSETEKLLNNLEAADNPIRAIFTV
                     DRLTEGWDVLNLFDIVRLYEGQNGGGSNKKSGKTAAATVSEKQLIGRGVRYFPFAFEG
                     KQPNKRKFDNDMQHELRILEELFYYTHDEQSRYISELKNELRKDGYLPEKDDDKVLAT
                     FKLKSEFADNKDFRELLIWANKKIPNPNAKSNNADSLQANPQTLSFQIHGNQLLQETQ
                     FTADENDETARQIGTQNNFTQTIKMSEMERHIFNKALHIKGKNSQSLFHFDRLQSKLN
                     IQNRNELQNNLLKDWQIEFLGLGQDKQVRPDDKLAGCLKILEMVEKHLNESDMPFIGT
                     KEFTPKKLWEIFGTPKQKWVKKDDVKTTIATQNDWYVMDNFAGTGLEEALIQFISARL
                     GDLKSKYDVHLIRNEEVFKLNNFADGEGFMPDFILLLKDKQKSSSNGVNDFLHYQIFI
                     EPKGEHLVETDGWKEEFLEAITVEYGMDKILQKDTPHYRLIGLPFFTDHQKNGQFTES
                     FPLGAASLEK"
     gene            complement(3576..4748)
                     /locus_tag="ACFOCN_000966"
     CDS             complement(3576..4748)
                     /locus_tag="ACFOCN_000966"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HFC6970132.1"
                     /translation="MKRDLSKMTCIEDLRRVAKRKMPRMFYDYIDSGSWTETTYRENT
                     SDFKDIRFRQKVLVNMEGRSLETKMIGQDVKMPVAIAPTGFTGMAHADGEILAARAAE
                     KFGIPFTLSTMSICSIEDVAENTSAPFWFQLYVMRDREFMENLIKRAKDAKCSALVLT
                     ADLQVLGQRHKDIKNGLSAPPKPTIANLINLATKPEWCMKMLNTERRTFRNIVGHAKN
                     VGDLSSLSSWTSEQFDPRLSWDDVARIKDLWGGKLIIKGIMEPEDAEKAAKSGADALI
                     VSNHGGRQLDDTVSAIKALPDIVSAVGSDIEVWMDSGIRSGQDILKAWALGAKGTMIG
                     RAFLYGLGAYGEEGVTRALEILYKEMDISMAFTGHRDIQDVDASILRGKDWGRETV"
     gene            5037..5483
                     /gene="iscR"
                     /locus_tag="ACFOCN_000967"
     CDS             5037..5483
                     /gene="iscR"
                     /locus_tag="ACFOCN_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HFC6970133.1"
                     /translation="MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQ
                     LFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDRLDATQCGSKANCHHGA
                     PCLTHDLWENLNKTINDYLGSVTLQSIIEQKNNGDGSRVVQFTHIH"
     gene            5512..6726
                     /locus_tag="ACFOCN_000968"
     CDS             5512..6726
                     /locus_tag="ACFOCN_000968"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HFC6970134.1"
                     /translation="MTVKTPVYLDYAATTPVDKRVAEKMIPYLTETFGNPASNSHAFG
                     WEAEEAVEKARADIAALINADPKEIVFTSGATESDNLAIKGAANFYKTKGKHLITVKT
                     EHKAVLDTMRELERQGFEVTYLGVQENGLIDLEELKAAIRDDTILISVMWANNEIGVV
                     QDIPAIGEICRERKIVFHVDAAQACGKVPVDVEAAKIDLLSMSAHKVYGPKGIGALYV
                     RRKPRVRLEAQMHGGGHERGFRSGTLPTHQIVGMGEAFRIAKEELEQDMAHYRKLRDI
                     FLKGIEGIEEVYINGDLEHRAPNNLNVSFNFVEGESLIMAVKELAVSSGSACTSASLE
                     PSYVLRALGRNDELAHSSLRITFGRMTTEEEVQFAAELIKSKIGKLRELSPLWEMFKD
                     GIDLNSIEWAAH"
     gene            6793..6921
                     /locus_tag="ACFOCN_000969"
     CDS             6793..6921
                     /locus_tag="ACFOCN_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970135.1"
                     /translation="MNEQDLDLDNLDNLLDDFDGVTVEGGVDSENDDGCEGGACKI"
     gene            6987..7373
                     /gene="iscU"
                     /locus_tag="ACFOCN_000970"
     CDS             6987..7373
                     /gene="iscU"
                     /locus_tag="ACFOCN_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HFC6970136.1"
                     /translation="MAYSDKVIDHYENPRNVGTFDKNDESVGTGMVGAPACGDVMRLQ
                     IKVNDEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDDALAIKNSEIAEELELPPV
                     KIHCSILAEDAVKAAVADYRKRQENR"
     gene            7460..7780
                     /gene="iscA"
                     /locus_tag="ACFOCN_000971"
     CDS             7460..7780
                     /gene="iscA"
                     /locus_tag="ACFOCN_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HFC6970137.1"
                     /translation="MITLTENAAKHINDYLAKRGKGLGVRLGVKTSGCSGMAYNLEFV
                     DEADGDDLIFEGHGARIYIDPKSLVYLDGTQVDYTKEGLQEGFKFENPNVKDSCGCGE
                     SFHV"
     gene            complement(7740..7961)
                     /locus_tag="ACFOCN_000972"
     CDS             complement(7740..7961)
                     /locus_tag="ACFOCN_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor A"
                     /protein_id="HFC6970138.1"
                     /translation="MGGKVQHNKGKIRDNALKALVKSDLFRHKVERKRKGKGSYNRQE
                     AKKWRDGFDTVPPFLCLKRGSFRRSRRSL"
     gene            8043..8543
                     /gene="hscB"
                     /locus_tag="ACFOCN_000973"
     CDS             8043..8543
                     /gene="hscB"
                     /locus_tag="ACFOCN_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001671 - ATPase activator activity
                     [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HFC6970139.1"
                     /translation="MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFE
                     QKQAVMMSSTINDAYRTLKNPIDRAAYLLKTSGIDADAPEHTAFAPEFLMQQMEWRET
                     LMEARAGNDLESLKNLDNEIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRN
                     EISSAL"
     gene            8641..11391
                     /gene="gyrA"
                     /locus_tag="ACFOCN_000974"
     CDS             8641..11391
                     /gene="gyrA"
                     /locus_tag="ACFOCN_000974"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HFC6970140.1"
                     /translation="MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPD
                     VRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQ
                     NFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS
                     EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELID
                     IIQAPDFPTGATIYGLSGVREGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQ
                     VNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTP
                     LQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGK
                     AVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAA
                     NIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPER
                     ITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTT
                     DYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRN
                     SRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGI
                     KAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISD
                     GIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQV
                     LTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG
                     VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVISNVTEPEV
                     EN"
     gene            11548..11906
                     /locus_tag="ACFOCN_000975"
                     /pseudo
     CDS             11548..11906
                     /locus_tag="ACFOCN_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060537127.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3536 a         3036 c         2690 g         2644 t
ORIGIN      
        1 agtagtggta atggaactga acagatgaaa aatctttttg gtgaaaaggc atttaaaaat
       61 cctaaaccag aagaacttat ccaagatttt attaccatca caaccaacga atccgacatc
      121 gtcttagact accatcttgg tagtggcaca accgccgccg ttgcccacaa aatgaaccga
      181 caatatatcg gtattgaaca aatggattat attgaaacgc ttgccgttga acgcttgaaa
      241 aaagtgattg atggcgagca aggcggtatt tccaaagccg tgaattggca aggtggtggc
      301 gagtttgttt atgccgaact tgccccattt aacgaaaccg caaaacaaca aattttggct
      361 tgcgaagatt cagacggcat caaaacgctg tttgaaggtt tatgcgaacg ctatttcttg
      421 aaatacaacg tcagcgtaaa tgaatttagt caaatcattc aagagcctga atttcaatcc
      481 ttggcattag acgaacaaaa acaaatggtg cttgaaatgt tggatttaaa tcaaatgtat
      541 gtttcattat ccgaaatgga tgatgagcaa tttgcaggtt gcttaaatga tgacgataaa
      601 gcgttaagcc gtgaattcta tcaatcagca aaaaatcaag cggagaaaaa agatggcgaa
      661 taataaaacg ttatttgatt gggtggaaga ccgcaaatca acgctggaag aaatagaaca
      721 gacagatttt ttcgcgctgc ctgaatttgt agaacgcaat ttaaaatatc cgttttttga
      781 atggcaaaaa tcggctttag aaaactttgt gatttttgac cgcgcttcaa aattaaagga
      841 tttccctgac atcaaaaacc gccctaccca tttgctgttc aatatggcaa caggtgctgg
      901 caaaacgatg atgatggcgg cgttgatttt gtattatttt gaaaaaggtt atcggcattt
      961 tttgtttttc gtcaatcaaa ataatatcgt ggataaaacg gaaaataatt ttattgaccc
     1021 ggcgcacgca aaatttttat ttaccgagaa gattttgcaa ggtgatacgg taattcctat
     1081 tcgcaaagtg gaaatgttca gcccacattc agacggcatt gaaattaaat ttaccagcat
     1141 tcaaaaactg tataacgata tccacaccga gcgagaaaac caaaccacat tggcagattt
     1201 gcacaaattg aaccttgtga tgctgggcga tgaagcacac catttaaacg cacaaaccaa
     1261 aggcaaaaaa caagacgagt tggatttgga agtggaatta aaagccaatg caggcaatgc
     1321 cgaaattgaa cgcaaaggct gggagcatat ggttttggaa ttgttgctca ataaaaatgg
     1381 caatcccggc caaaatgtgc tgttggaatt taccgccacg ctgcctgaaa atgcggacgt
     1441 gcaacaaaaa tatgcggaca aaatcatcac aaaatttggc ttaaaagagt ttttgcaaaa
     1501 aggttatacc aaagaaatca atttggtatc cagtacgctg aataagaaag agcgggtgtt
     1561 gcacgcttta ttatttgctt ggtatcgcca tcaaatcgcg ttgaaatacg gcattgccaa
     1621 tttcaagcct gtgatgttgt ttagaagtaa gacgattgat gaatcaaaag cggattattc
     1681 ggcattttta aattgggcag aaaatgtaca agcggatgat tttgagtttt tagatacgtt
     1741 ttcaggcagc ctgaataata gcgacaacgc caacgaacaa ggcaaaaccc gaaccgaaca
     1801 agccctaaaa tttatgcagg aaaatggctt tgagtttgca catttggcaa attgggtgaa
     1861 acaaaattat caaaaacata atgtgattat taccaactcc gaaaccaaca aaaacaaaac
     1921 tgaaaaaacc gacagcgaaa ccgaaaaatt gctaaacaat ttggaagcgg ctgataatcc
     1981 aatccgtgcc atttttacgg tagatagatt aaccgaaggt tgggacgttc tgaatttgtt
     2041 tgatattgtg cgtttgtatg aagggcaaaa tggcggtggt tcaaataaaa aatcaggcaa
     2101 aacggctgcc gctaccgtat cggaaaagca gttgattggt cgtggcgtgc gttattttcc
     2161 atttgcgttt gaaggtaaac agccgaataa acgcaaattt gacaacgaca tgcaacacga
     2221 attgcgtatc ttggaagaat tgttttatta cacgcacgat gagcaatccc gctatatttc
     2281 agaactgaaa aatgagttgc gaaaagacgg ttatttgcct gaaaaagacg atgataaggt
     2341 gttggcaaca tttaaactca aatctgaatt tgccgataat aaggatttta gagagttgtt
     2401 aatttgggcg aataaaaaaa tccccaaccc aaacgccaaa agcaataatg cagacagcct
     2461 gcaagccaat ccgcaaacgc tttcattcca aattcacggc aatcaattgt tgcaggaaac
     2521 gcaatttaca gccgatgaaa atgatgaaac agcccgacaa atcggcacac aaaataattt
     2581 tactcaaacc ataaaaatga gtgaaatgga gcggcacatt ttcaataaag cattacatat
     2641 caaagggaaa aatagtcaat ctttattcca ttttgaccgc ctgcaaagca aactcaacat
     2701 tcaaaatcgc aatgaattgc aaaataactt gttgaaagac tggcaaattg aatttttagg
     2761 attagggcaa gacaaacagg ttcgcccgga tgataaactt gcaggctgcc tgaaaatctt
     2821 ggaaatggtt gaaaaacatc tgaatgaaag tgatatgccg tttatcggta caaaagaatt
     2881 tacacctaaa aaattatggg aaattttcgg cacgccaaaa caaaaatggg tcaaaaaaga
     2941 tgatgtaaaa acgactattg ccacgcaaaa tgattggtat gtgatggata attttgctgg
     3001 aacgggtttg gaagaagcgt taattcaatt tatttcagcg cgtttgggcg atttgaaatc
     3061 taaatatgac gttcatttaa tccgtaatga agaagtgttt aaattgaata actttgccga
     3121 tggtgaagga tttatgccgg actttatttt attgctgaaa gataaacaaa aatcttcttc
     3181 caatggtgtg aacgactttt tgcattacca aattttcatt gagcccaaag gtgagcattt
     3241 agtggaaact gatggatgga aagaagaatt tttagaagcc atcactgtgg aatatgggat
     3301 ggataagatc ctgcaaaaag atacaccgca ttatcgtttg atcggtttac cgttttttac
     3361 tgatcatcag aaaaatggac aatttacgga gtcattccct ttaggtgcgg catcgcttga
     3421 aaaatagagt agtgcattgc aggcaacccc gtttgacaaa acttccttta caaaagggcg
     3481 ttttgtcaga tatttaatca acacattatt aaaatacagc caaattttaa tgccgtccga
     3541 accctgtgtt cagacggcat cgtatttttc agtatctaaa ccgtttccct accccaatct
     3601 ttacccctta aaatcgaggc atcgacatct tgaatatcgc ggtgtcccgt aaacgccata
     3661 gatatatcca tttctttata tagaatttcc agcgcacggg ttacgccttc ttcgccatac
     3721 gcgcccaagc catacaggaa cgcccgacct atcattgtac ctttcgcgcc caaagcccac
     3781 gccttcaaaa tatcctgacc gctgcggatg ccgctgtcca tccaaacttc gatgtcgctg
     3841 cccactgcgc tgacgatgtc gggcaaggct ttgatggcag acacggtatc gtcgagctgt
     3901 cggccgccgt ggttggaaac aatcaatgcg tccgcgccgc ttttcgctgc tttttccgcg
     3961 tcttcgggtt ccataatgcc tttgataatc agcttgccgc cccacaaatc tttaatgcgc
     4021 gccacatcgt cccagctcag gcgcgggtcg aattgttcgg aagtccatga agacagcgaa
     4081 gacaaatcgc cgacgttctt cgcgtgtccg acgatattgc ggaacgtgcg gcgttccgtg
     4141 ttcagcattt tcatgcacca ttccggtttg gtcgccagat tgattaaatt ggcgatggtc
     4201 ggtttcggcg gcgcggacag gccgtttttg atgtctttgt ggcgttgacc caaaacctgc
     4261 aaatcggcgg tcaataccaa tgccgaacat ttggcatcct tcgcgcgctt aatcaggttt
     4321 tccataaact cgcggtcgcg catcacataa agctgaaacc aaaacggcgc gctggtgttc
     4381 tcggcaacgt cttcaatcga gcagatggac atggtggaca acgtaaacgg aataccgaac
     4441 ttctccgccg cccgcgccgc caaaatttcg ccgtctgcgt gtgccatgcc ggtaaaaccc
     4501 gtcggcgcaa tcgccaccgg cattttcaca tcctgcccga tcattttagt ctcaaggctg
     4561 cgtccctcca tattgaccaa tactttttga cggaagcgga tgtctttgaa atccgaagta
     4621 ttttcccgat aagtcgtttc cgtccacgaa cccgaatcga tgtaatcgta aaacatacgc
     4681 ggcattttgc gcttggcaac gcggcgcaag tcttcgatgc aggtcatttt gctcaaatca
     4741 cgtttcattt gtcgcccctg aatacctgaa taactttata tgaaatagat aatgtatatc
     4801 aatattgatt ataaggcaaa tcatttcaac atttactgca cccgccgccg ctcccacttc
     4861 aagcggcata aggtttagaa ttcaaaaata atatattaaa atcaaaatat taaaaatcaa
     4921 tcaatctgcc gatttaaaca gccaatcgcg caatccgccc ccatacttga ctgaaacact
     4981 cagatattgg acaattccgc ccactataaa aaaagccgac acgggcaacc accaccatga
     5041 gactgaccac caaagggcgt ttcgccgtta ccgctatgct ggatttggcg atgaacgcgc
     5101 aaaccggcgc cgtcaaactc agtgccatca gcgaacgcca aaacatatcc ctctcctatc
     5161 tcgagcaatt gttcggcaaa ctccgccgcg ccggacttgt tgaaagcctg cgcgggcccg
     5221 gcggcggcta catcctcgcc gcaccggcgg cacgcatcaa catcgcccaa atcatcgccg
     5281 ccgccgaaga ccggctggac gcgacccaat gcggcagcaa agccaactgc caccacggcg
     5341 cgccctgcct gacgcacgac ctttgggaga atttaaacaa aaccatcaac gactacctcg
     5401 gcagcgttac cctgcaaagc atcatcgaac agaaaaacaa cggcgacggc agccgcgtcg
     5461 tccaatttac acacatccat taaataacac ccgaaaaaga aagggcaaac catgaccgtc
     5521 aaaacccccg tttacctcga ctacgccgcc accacccccg ttgacaaacg cgttgccgaa
     5581 aaaatgattc cctatctgac cgaaaccttc ggcaaccccg cctccaacag ccacgcattc
     5641 ggctgggaag cagaagaggc cgtcgaaaaa gcccgcgccg acatcgctgc cctgattaat
     5701 gccgacccca aagaaatcgt cttcaccagc ggcgcgaccg agtccgacaa cctcgccatc
     5761 aaaggcgcgg caaacttcta caaaaccaaa ggcaaacacc tcatcaccgt caaaaccgaa
     5821 cacaaagccg ttttagatac aatgcgcgaa ctcgaacgcc aaggttttga agtaacctac
     5881 ctcggcgttc aagaaaacgg tttgattgat ttggaagaac tcaaagccgc catccgcgac
     5941 gacaccatcc tgatttccgt aatgtgggca aacaacgaaa tcggcgtggt gcaagacatt
     6001 cccgccatcg gcgaaatctg ccgcgaacgt aaaatcgtct tccacgtcga tgccgcccaa
     6061 gcctgcggca aagtgcctgt cgatgtcgaa gccgccaaaa tcgacctgct ctcgatgtcc
     6121 gcgcacaaag tgtacggccc caaaggcatc ggcgcgctgt acgtccgccg caaaccgcgc
     6181 gtccgcctcg aagcccaaat gcacggtggc ggccacgaac gcggcttccg cagcggcaca
     6241 ttaccgaccc accaaatcgt cggtatgggc gaagccttcc gcatcgccaa agaagaactc
     6301 gaacaagata tggcgcacta ccgcaaactg cgcgacatct tcctcaaagg catcgaaggc
     6361 atcgaagaag tctatatcaa cggcgacctc gaacaccgcg ccccgaacaa cctgaacgtc
     6421 agcttcaact tcgtcgaagg cgaaagcctg attatggcag tgaaagaact cgccgtatcc
     6481 agcggctccg cctgcacctc cgcctcgctc gaacccagct acgtcctgcg cgcattgggc
     6541 agaaatgacg aattggcgca ctcgtccctg cgcatcacct tcggtcgcat gaccactgaa
     6601 gaagaagtgc aatttgccgc cgaactgatt aaatccaaaa tcggcaaact gcgcgaactg
     6661 tcgccgttgt gggaaatgtt caaagacggg attgatttga actcgattga atgggcggcg
     6721 cattaaagcg taccaacatg ccatccgaac cttcagacgg cattccaaaa acaaagcaat
     6781 caagagaaaa atatgaacga acaagattta gatttggaca acctcgacaa cctgcttgac
     6841 gatttcgacg gcgttaccgt ggaaggcggc gtcgattcgg aaaacgacga cggctgtgaa
     6901 ggcggagcgt gcaaaatcta actcaggccg tctgaaaacc ggcaaacaaa ccacttaaat
     6961 catcaaaaca ttaaggaaac cacatcatgg catacagcga taaagtaatc gaccactacg
     7021 aaaatccccg caacgtcggt actttcgaca aaaacgacga atctgtcggc accggcatgg
     7081 tcggcgcacc ggcctgcggc gacgtgatgc gcctgcaaat caaagtgaac gatgaaggca
     7141 tcatcgaaga tgcgaaattc aaaacttacg gctgcggttc cgccatcgct tcgtccagcc
     7201 tgattaccga gtgggtcaaa ggcaaaagtc tggatgacgc gctggcaatc aaaaacagcg
     7261 aaatcgccga agagttggaa ttgccgccgg taaaaatcca ctgctccatc ttggctgaag
     7321 atgcggtaaa agcggccgtt gccgactacc gcaaacgtca ggaaaacaga taaagccttt
     7381 cagacggcat cgtcccgcaa tgccgtccga accacccgcc gcttcaggtc cgtccggggc
     7441 ggtacaacaa ggaagaaata tgattaccct taccgagaat gccgcaaaac acatcaatga
     7501 ctatctcgcc aaacgcggca aaggcttggg cgtacgcttg ggtgtgaaaa ccagcggctg
     7561 ctcggggatg gcgtacaacc ttgaatttgt cgatgaagcc gatggcgacg acctgatttt
     7621 cgaaggacac ggcgcgcgca tttatatcga tccgaaaagc ctggtttatc tggacggcac
     7681 gcaagtcgat tacaccaaag aaggtttgca ggaaggtttc aaatttgaaa accccaatgt
     7741 caaagactcc tgcggctgcg gcgaaagctt ccacgtttaa ggcataaaaa cggcgggaca
     7801 gtatcaaaac cgtcccgcca ttttttcgct tcctgcctgt tgtagctgcc tttgcctttc
     7861 cttttccgtt ccaccttgtg ccggaacaaa tcggatttca ctaaggcttt taaagcattg
     7921 tcgcgtattt tgcctttatt gtgctgcact ttgccgccca tattcagtcc tttcgtttaa
     7981 gaagctgcag attataaggc aaaaacagtt ttctgccaaa atcttacatt tatcattcta
     8041 ctatgtccca atatttcacc ctcttccgga ttgaacccgc tttcgatatc gacaccgaaa
     8101 acttggaaca aacctaccgc gccttggccg cccgtttcca tcccgataaa ttcgcttcag
     8161 cttccgcctt tgagcaaaag caggcagtga tgatgtcttc caccatcaac gatgcctacc
     8221 gcaccttgaa aaaccccatc gaccgcgccg cctacctgct gaaaacatcg ggcatcgatg
     8281 ccgacgcgcc ggagcatacc gctttcgccc ccgaattcct tatgcagcaa atggaatggc
     8341 gcgaaacgct gatggaggca cgggcaggca acgaccttga atccttgaaa aatctcgaca
     8401 acgaaatccg cgacgaacaa gaaaaactgt tctgcggtct gaaacagtcg tttgcccgac
     8461 aagattacga cacagccgca caacaagtcc gccaaggcag gtttctcgac aaactccgca
     8521 acgaaatttc ctcggcatta taatccgcac cgtgtttcag acggcgtaac cgccgcaccg
     8581 ttccgcgtca aaatatgcta aaataagcaa caattttttg ccatacgaaa cattgaaacc
     8641 atgaccgacg caaccatccg ccacgaccac aaattcgccc tcgaaaccct gccggtaagc
     8701 cttgaagacg aaatgcgcaa aagctatctc gactacgcca tgagcgtcat tgtcgggcgc
     8761 gcgctgccgg acgttcgcga cggtctcaag ccggtacacc gccgcgtact gtacgcgatg
     8821 cacgaattga aaaacaactg gaatgccgcc tacaaaaaat cggcgcgcat tgtcggcgac
     8881 gtcatcggta aataccaccc ccacggcgat accgccgtat acgacaccat cgtccgtatg
     8941 gcgcaaaatt tcgctatgcg ttatgtgctg atagacggac agggcaactt cggatcggtg
     9001 gacgggcttg ccgccgcagc catgcgctac accgaaatcc gcatggcgaa aatttcccac
     9061 gaaatgctgg cagacattga ggaagaaacc gtcaatttcg gcccgaacta cgacggtagc
     9121 gaacacgagc cgcttgtact gccgacccgt ttccccacac tgctcgtcaa cggctcgtcc
     9181 ggcatcgccg tcggcatggc gaccaatatc ccgccgcaca acctttccga taccgtcaat
     9241 gcctgcctgc gcctgctcga tgcacccgac accgaaatcg acgaactgat cgacattatc
     9301 caagcccccg acttcccgac cggggcaacc atctacggct tgagcggcgt gcgcgaaggc
     9361 tataaaacag gccgcggccg cgtcgttatg cgcggtaaga cccatatcga acccataggc
     9421 agaaacggcg aacgcgaagc catcgttatc gacgaaatcc cctatcaggt caacaaagcc
     9481 aagctggtcg agaaaatcgg cgatttggtt cgggaaaaaa cactggaagg catttccgag
     9541 ctccgcgacg aatccgacaa atctggtatg cgcgtcgtta tcgagctgaa acgcaacgaa
     9601 aatgccgaag tcgtcttaaa ccaactctac aaactgactc cgctgcaaga cagtttcggc
     9661 atcaatatgg tggttttggt cgacggacaa ccgcgcctgt tgaacctgaa acagattctc
     9721 tccgaattcc tgcgccaccg ccgcgaagtc gttacccgac gtacgctttt ccggctgaag
     9781 aaggcacgcc atgaagggca tattgccgaa ggcaaagcgg tcgcactgtc caatatcgat
     9841 gaaatcatca agctcatcaa agaatcgccc aacgcagccg aggccaaaga caaactgctt
     9901 gcgcaccctt ggcgcagcag cctcgttgaa gaaatgctga cgcgttccgg tctggatttg
     9961 gaaatgatgc gtccggaagg attggctgca aacatcggct tgaaagagca aggttattac
    10021 ctgagcgaga ttcaggcaga tgctatttta cgcatgagcc tgcgaaacct gaccggcctc
    10081 gatcaagaag aaattgtcga aagctacaaa aacctgatgg gtaaaatcat cgactttgtg
    10141 gatatcctct ccaaacccga acgcattacc caaatcatcc gcgacgaact ggaagaaatc
    10201 aaaaccaact atggcgacga acgccgcagc gaaatcaacc cgttcggtgg cgacattgcc
    10261 gatgaagacc tgattccgca acgcgaaatg gtcgttaccc tgacacatgg cggctatatc
    10321 aaaacccagc cgaccaccga ctatcaggcg cagcgtcgcg gcgggcgcgg caaacaggcg
    10381 gctgccacca aagacgaaga ctttatcgaa accctgtttg ttgccaacac gcatgattat
    10441 ttgatgtgct ttaccaattt gggcaagtgt cattggatta aggtttacaa actgcccgaa
    10501 ggcggacgca acagccgcgg ccgtccgatt aacaacgtca tccagttgga agaaggcgaa
    10561 aaagtcagcg cgattctggc agtacgcgag ttccccgaag accaatacgt cttcttcgcc
    10621 accgcgcagg gaatggtgaa aaaagtccaa ctttccgcct ttaaaaacgt ccgcgcccaa
    10681 ggcattaaag ccatcgcgct caaagaaggc gactacctcg tcggcgctgc gcaaacaggc
    10741 ggtgcggacg acatcatgct gttctccaac ttaggtaaag ccatccgctt caacgaatac
    10801 tgggaaaaat ccggcaacga cgaagcggaa gatgccgaca tcgaaaccga aatttcagac
    10861 ggcatcgaag atgaaaccgc cgacagcgaa aacgcactgc cgagcggcaa acacggtgtt
    10921 cgcccgtccg gtcgcggcag cggcggtttg cgcggtatgc gcctgcctgc cgacggcaaa
    10981 atcgtcagcc tgattacctt cgcccctgaa accgaagaaa gcggtttgca agttttaacc
    11041 gccaccgcca acggatacgg aaaacgcacc ccgattgccg attacagccg caaaaacaaa
    11101 ggcgggcaag gcaatattgc cattaacacc ggcgagcgaa acggcgattt ggtcgccgca
    11161 accttggtcg gcgaaaccga cgatttgatg ctgattacca gcggcggcgt acttatccgc
    11221 accaaagtcg aacaaatccg cgaaaccggc cgcgccgcag caggcgtgaa actgattaac
    11281 ttggacgaag gcgaaacctt ggtatcgctg gaacgtgttg ccgaagacga atccgaactc
    11341 tccgacgctt ctgtaatttc caatgtaacc gaaccggaag tcgagaactg aaaatcatct
    11401 cccgatgccg tctgaagatt cagacggcat ttattttatc cctcatccgt catccagctt
    11461 ctcacaatat agcggattat agtcaattaa aaacaagggg ctgtcctaga taactaggga
    11521 aattcaaatt aagttagagt tgcccctatg agaaaaagtc gtctaagccg gtataaacaa
    11581 ataaactcat tgaactgttt gtcgcaggtg taactgcaag aacgacagca gagttagtag
    11641 gcgttaataa aagtaccgca gcctattatt ttcatcgttt acgattactt atttatcaaa
    11701 acagtccgca tttggaaatg tttgatggcg aagtagaagc agatgaaagt tattttgctg
    11761 aacgacaaaa ccatatcaat ggaattgaga acttttggaa ccgggcaaaa cgtcatttac
    11821 gcaagtttga cggcattccc aaagcgcatt ttgagctgta tttaaagggg tacgaacggc
    11881 gttttaacaa cagtgagata aaagtt
//
LOCUS       DAXIFD010000052        11803 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.052, whole genome shotgun sequence.
ACCESSION   DAXIFD010000052 DAXIFD010000000
VERSION     DAXIFD010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11803
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.052"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(117..272)
                     /gene="rpmG"
                     /locus_tag="ACFOCN_000976"
     CDS             complement(117..272)
                     /gene="rpmG"
                     /locus_tag="ACFOCN_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009766925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HFC6970141.1"
                     /translation="MRDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVV
                     YKETKLK"
     gene            complement(304..537)
                     /gene="rpmB"
                     /locus_tag="ACFOCN_000977"
     CDS             complement(304..537)
                     /gene="rpmB"
                     /locus_tag="ACFOCN_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HFC6970142.1"
                     /translation="MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESEN
                     RWVRLRVSNAALRTIDKVGIDVVLADLRARGEA"
     gene            complement(787..2313)
                     /gene="farB"
                     /locus_tag="ACFOCN_000978"
     CDS             complement(787..2313)
                     /gene="farB"
                     /locus_tag="ACFOCN_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     permease subunit FarB"
                     /protein_id="HFC6970143.1"
                     /translation="MDYPPLKGAALAWVTLSLGLAVFMEVLDTTIANVAVPVIAGNLG
                     AATTQGTWVITSFAVANAVSVPLTGFLAKRIGEVKLFTAAAVGFVITSWLCGIAPNLQ
                     SLVVFRILQGFIAGPLIPLSQSLLMASYPPAKRTLALALWAMTVVVAPVLGPILGGWI
                     SGNWHWGWIFFINIPIGIISAWITWKHLKYRETETVKMPTDYVGLTLMVVGIGALQMM
                     LDRGKELDWFASGEIITLGVVALVCLSYFIVWELGEKYPIVDLSLFKDRNFTVGVIAT
                     SLGFMVYMGTLTLLPLVLQTNLGYTSTWAGLAAAPVGILPVFLSPLIGRFGNKIDMRL
                     LVTASFLTFAFTFYWRTDFYADMDIGNVIWPQFWQGAGVAMFFLPLTTITLSHMKGGQ
                     IAAAGSLSNFLRVLMGGVGVSVVSTLWERREALHHTRFAEHITPYSATLHETAAHLSQ
                     HGVSDIQTLGIINNTITQQGFIIGSNEIFMAGSLLFIIMIPVIWLAKPPFHNGGGGGH
                     "
     gene            complement(2337..3509)
                     /gene="farA"
                     /locus_tag="ACFOCN_000979"
     CDS             complement(2337..3509)
                     /gene="farA"
                     /locus_tag="ACFOCN_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     adaptor subunit FarA"
                     /protein_id="HFC6970144.1"
                     /translation="MATHGDEVKIQNRQEADSAKAKRKRCLTALTLLFALAAAAAGSA
                     FFLWWQHEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDNDVL
                     AYERAKNELIQAVRQNRRQNAATSQAGAQVALRRADLARAQDDLRRRSALAESGAVSA
                     EELAHARAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNLQ
                     RTQIRAPADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPA
                     ELVSDLYGKQIVYRGRVAGFSAGTGSAFSLIPAQNATGNWIKVVQRVPVRIVLNREDV
                     DRHPLRIGLSMTVKVDTSAAGAPVSKTPGAALPEMESTDWSEVDRTVDEILGQSAP"
     regulatory      3738..3782
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            3786..4259
                     /gene="queF"
                     /locus_tag="ACFOCN_000980"
     CDS             3786..4259
                     /gene="queF"
                     /locus_tag="ACFOCN_000980"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HFC6970145.1"
                     /translation="MSRNTEELQGISLLGNQKTRYPTGYAPEILEAFDNKHPDNDYFV
                     KFVCPEFTSLCPMTGQPDFATIYIRYIPHIKMVESKSLKLYLFSFRNHGDFHEDCVNI
                     IMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYGKAGTEFETLARKRLFEHDSQ"
     gene            4334..5020
                     /locus_tag="ACFOCN_000981"
     CDS             4334..5020
                     /locus_tag="ACFOCN_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HFC6970146.1"
                     /translation="MYAFTAAQQQKALFWLVLFHILIIAASNYLVQFPFQIFGIHTTW
                     GAFSFPFIFLATDLTVRIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALS
                     EFNTFVGRIALASFAAYALGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFA
                     VAFYASSDEFMAANWQGIAFVDYLFKLTVCGLFFLPAYGVILNLLTKKLTTLQTKQAQ
                     DRPAPSLQNP"
     gene            complement(5523..6815)
                     /locus_tag="ACFOCN_000982"
     CDS             complement(5523..6815)
                     /locus_tag="ACFOCN_000982"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFC6970147.1"
                     /translation="MAVFPLSAKHRKYALRALAVSIILVSAAYIALTERTERVRPQRV
                     EQNLPPLSWGGSGVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLR
                     HLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTL
                     RSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDSLYFHGQQ
                     VAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDGRVLQEKGGFNIEPLVYTR
                     ISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHA
                     NGVETLYAHLSAFSQAQGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVAL
                     PTPELTQADKAAFAAQKQKADALLARLRGIPVTVSQSD"
     gene            6892..7860
                     /locus_tag="ACFOCN_000983"
     CDS             6892..7860
                     /locus_tag="ACFOCN_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970148.1"
                     /translation="MKLTLALPSLNLDEDEIRIPLCLPAFNKILQYGSLHRQSCTASA
                     FYARYLWCGRLAERAAQSLNMPSETVALATPVWQKMGMHQANVLTAEYLNVGTDEAER
                     LCRDLSAFYGDIPWRFVPVLPELWLVSLPCAYRWGAKPVLDLGGLLGADDQPDGEDAL
                     EWLRVQTEIQMWLAAHPVNHNRKKRGLPELNGLWLWDSLHGSSQGGTLFADTVWSRFH
                     PDRRALPDNFRAYEETAAYLPDTHHILFMDDLRLTALTGDRERYAAILQQWEERWFAP
                     LYEAVRIGKIKRLDIATDGQHGGTLTFKPADRWKFWRGAKTFDGIW"
     gene            complement(8061..9527)
                     /locus_tag="ACFOCN_000984"
     CDS             complement(8061..9527)
                     /locus_tag="ACFOCN_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6970149.1"
                     /translation="MVIFYFCGKAFMPARNRWMLLLPLLASAAYAEETPREPDLRSRP
                     EFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMYSAVVSNNIAGI
                     RVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAA
                     ALFENRQNEAAADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNI
                     NQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWSLKNGWYTTAGGDVSGRVYPGNKKF
                     NDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQTLS
                     SAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRY
                     GLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRAL
                     HFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF"
     gene            complement(9769..11803)
                     /locus_tag="ACFOCN_000985"
                     /pseudo
     CDS             complement(9769..11803)
                     /locus_tag="ACFOCN_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374912.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         2665 a         3469 c         2921 g         2748 t
ORIGIN      
        1 tccttggcag acggtttgca gcagattcgc atacagcaga tgtttcaagc ggaaaagaaa
       61 cacgataaaa ataaaaaagc ctccgaacag tcggaggctt tgctttcaaa ctgaaattat
      121 ttcagtttgg tttctttgta cactacgtgt ttgcgggcaa ccggatcgaa ttttttgatt
      181 tccagtttgc cgggcatagt gcgtttgttt ttggtagtgg tgtagaagtg accagtacct
      241 gcactggatt ccagtttgat tttatcgcgc attgcagtaa tccttaatta aatagtgttt
      301 aaattaagct tcgccgcgag cacgcaaatc agccaatacg acatcaatgc ctactttgtc
      361 gatggtacgc agtgcagcgt tggaaacgcg caggcgaacc cagcggtttt cactttctac
      421 ccaaaaacga cgtgattgca agttgggcaa aaaacggcgt ttggttttgt tgttggcgtg
      481 cgatacgttg ttgccggaca tcgggcgttt gccggtcact ttgcaaactc gtgccataat
      541 cagtctccaa acttctaaaa tagtaaaacg cgatttatac cacgaaaaac agtgttagtt
      601 caagtgtttt agagaaaaac ggctgttttg cgcggataat ccttccgatt gtcgcatctg
      661 tggaacgttt gcaggtgcga aacagatggg gcgcgattat agcggatttc gggaactgct
      721 gcattcaaaa tgccgtccga acatatttcc agtattttca gacggcattt caagttttca
      781 aatccctcaa tgtccaccgc cgccgccgtt gtggaacggc ggttttgcca gccatatgac
      841 gggtatcatg ataatgaata acaagctgcc cgccataaag atttcgttcg agccgataat
      901 aaaaccctgc tgggtaatgg tattgttgat gatgcctagg gtttgaatgt cggaaacgcc
      961 gtgctgggac aaatgagcgg ccgtttcgtg caatgttgcg gaatagggcg tgatgtgttc
     1021 ggcaaagcgt gtatggtgca acgcttcgcg ccgttcccac agggtgctga cgacggatac
     1081 gccgacaccg cccatcagca cgcgcaagaa attcgacagg ctgcctgcgg cggcaatctg
     1141 tccgcccttc atgtgcgaca gtgtgatggt ggtcagcggc aggaagaaca tggcaacgcc
     1201 tgccccctgc caaaactgcg gccagatgac gttgccgata tccatgtcgg cataaaaatc
     1261 ggtgcgccaa tagaaagtaa aggcaaaggt caggaagctg gcggttacga gcaggcgcat
     1321 atcgatttta ttgccgaacc tgccgattaa cggagacagg aagacgggca ggatgccgac
     1381 gggtgcggcg gcaagccccg cccacgtgga ggtatagccc aggttggtct gcaacactaa
     1441 cggcagcaag gtcagcgtcc ccatatacac cataaaaccc aatgatgtgg caattacgcc
     1501 gacggtaaaa ttccgatctt taaacagcga taaatcgaca atcggatatt tttctcccaa
     1561 ttcccaaaca ataaaatacg acaaacacac cagtgcgact acgcccaagg taatgatttc
     1621 tccagaggcg aaccagtcga gttccttacc cctgtccagc atcatctgta acgcgccgat
     1681 accgactacc atcaatgtaa gcccgacata gtcggtcggc attttaacgg tttccgtttc
     1741 ccgatatttc aaatgtttcc atgtaatcca tgccgatatg ataccgatag ggatattaat
     1801 gaagaaaatc caaccccaat gccagtttcc ggaaatccaa ccgccgagta tcggcccgag
     1861 aacaggggcg acaacgacgg tcattgccca caatgccagt gccagcgtcc gttttgcggg
     1921 cggataggat gccattaaca ggctttgcga caggggaatc agcggcccgg cgataaagcc
     1981 ctgcaagatg cggaaaacaa ccagcgactg aaggttgggg gcaataccgc acagccacga
     2041 tgtgatgacg aaaccgacag cggcggcggt aaacaatttg acctcgccga tacgttttgc
     2101 caaaaagccc gttaacggca cggaaacggc gtttgccaca gcaaaagaag taatgaccca
     2161 cgtcccctgc gtggttgccg caccgaggtt gccggcgatg acgggaacgg cgacattggc
     2221 gatagtcgta tctaaaactt ccataaatac ggcaagcccc aaagacagcg taacccacgc
     2281 caatgccgca cccttaagcg gtggataatc cattgtgtcc tccgtttcag acggcatcag
     2341 ggcgcggatt gcccgaggat ttcatcgacc gtccgatcga cttccgacca gtcggtactt
     2401 tccatttccg gcaatgccgc acccggcgtt tttgaaacag gcgcgcctgc ggcggaagta
     2461 tccactttaa ccgtcatcga caaaccgata cgcaacggat gcctgtccac atcttcgcgg
     2521 ttcagcacga tacggacggg gacgcgctgc accactttaa tccagttgcc cgttgcgttt
     2581 tgcgccggaa tcagcgaaaa cgcgctgccc gtacctgccg aaaaacctgc caccctgccg
     2641 cgataaacaa tttgtttgcc gtacaaatcg gacaccagct cggcaggctg tccgattttc
     2701 atatgccgca actgcgtctc tttaaaatta gcatccaccc acacatccga cagcggcacc
     2761 accgccatca gcggcgcgcc tgccgccacc tgctgcccga cctgcaccga acgcttcgcc
     2821 acctgaccgt ccgccggcgc gcggatttgc gtccgctgaa ggttcaacca cgcatctttc
     2881 aacctgccga ttgccgtctg aaccgccggc tgttcgcgca aagaaacctg accgcccaaa
     2941 gccgcacgcg ccgaagattc ttccgccaaa gccgccttaa ctgccgcctg agcctgagac
     3001 actgccgcac gggcatgtgc cagctcttcg gcggacaccg cgcccgattc cgccaaagca
     3061 gaccggcggc gcaaatcatc ctgcgcgcgt gccaaatccg cccggcgcaa ggcaacctgc
     3121 gcccccgcct gcgaagtggc ggcattttgc cggcggtttt gccgcaccgc ctgaatcagc
     3181 tcgttttttg cccgctcgta agccagcaca tcattatcgt cgtccaatac cgccagcacg
     3241 tcgccttttt tcacggcatc cgtatcgtcg tgcaaaacct tccgcaccgt accgcccttt
     3301 tgcggcgtaa cctgaaccac gcgtccggca acataagcgt cttccgtttc ctcttcgtgc
     3361 tgccaccata aaaaaaacgc cgacccggcg gctgcggcgg caagcgcgaa cagcagcgtc
     3421 aatgccgtca ggcagcgttt gcgtttggct tttgcgctat cggcttcttg tctgttttga
     3481 attttcactt cgtctccgtg tgttgccatt attccaattc cgaatatttt taatacgata
     3541 taaataaagc cgatcaaagg cagctcggat tctataccct ggcaataacc caatcaagtt
     3601 aatgatttag aatgaatatt caaataaacc gccacacccg cgttccgcaa aattaattta
     3661 tgttcaaaaa taatcggata agcgcgccgt accgggcggg gacgctacac agataccgcc
     3721 gcttatatta caatcgtcgc cccgtggttc gaaaacctcc cacactaaaa aactaaggaa
     3781 accctatgtc ccgcaatacc gaagagctgc aaggcatctc gcttttgggt aatcaaaaaa
     3841 cccgatatcc gaccggctac gcgcctgaaa ttctcgaagc attcgacaac aaacatcccg
     3901 acaacgacta tttcgtcaaa ttcgtctgcc cagagttcac cagcctctgc cccatgaccg
     3961 ggcagcccga cttcgccacc atctacatcc gctacattcc gcacatcaaa atggtggaaa
     4021 gcaaatccct gaaactctac ctcttcagct tccgcaacca cggcgatttt catgaagact
     4081 gcgtcaacat catcatgaaa gacctcattg ccctgatgga tccgaaatac atcgaagtat
     4141 tcggcgagtt cacaccgcgc ggcggcatcg ccattcatcc tttcgccaat tacggcaaag
     4201 caggcaccga gttcgaaaca ttggcgcgta aacgcttgtt cgaacacgac agccaataaa
     4261 ccatccttcc catatttcag acggcattcc ttcgatacga tatgccgtct gaacgccttt
     4321 ccgaaagatt tttatgtacg catttactgc cgcacagcaa cagaaggcac tcttctggct
     4381 ggtgcttttc catatcctca tcatcgccgc cagcaactat ctggtgcagt tccccttcca
     4441 aattttcggc atccacacca cttggggtgc gttttccttt cccttcatct tcctcgccac
     4501 cgacctgacc gtccgcattt tcggttcgca cttggcacgg cggattatct tttgggtgat
     4561 gttccccgcc cttttgcttt cctacgtctt ttccgttttg ttccacaacg gcagttggac
     4621 aggcttgggc gcactatccg aattcaacac ctttgtcgga cgcatcgcct tggccagctt
     4681 tgccgcctac gcgctcggac aaatccttga tatttttgtg ttcaacaaat tacgtcgtct
     4741 gaaagcgtgg tggattgcac cgaccgcatc aaccgtcatc ggcaatgcac tggacacgtt
     4801 agtgtttttt gccgttgcct tttacgccag cagcgatgaa tttatggcgg caaactggca
     4861 gggcatcgct tttgtcgatt acctgttcaa acttaccgtc tgcggtctgt ttttcctgcc
     4921 cgcctacggc gtgattctga atctgctgac gaaaaaactg acaaccctgc aaaccaaaca
     4981 ggcgcaagac cgccccgcgc cctcgctgca aaatccgtaa aacagccctg ccgggaatcg
     5041 ggacggttgg gttttctttt atttgcaaac actgtcggaa cggataaatc cggattcccg
     5101 cccacttcgt cattcccgcg aaagcgggaa tccggtacgt tgggtttcag tcatttccga
     5161 taaactccta ccgcattgta tttctagatt cccgctttcg cgggaatgac ggcggatggg
     5221 tttccgtgcc gtggtgtccg gattcccgac ggtacgggaa tgacggcagt gcttccttaa
     5281 cttagtttta ttttaatcga ctgtatggtg gattaacaaa aatcaggaca aagcgacgaa
     5341 gccgcagaca gtacaaatag tacgaaaccg attcacttgg tgcttcagca tcttagagaa
     5401 tcgttctctt tgagctaagg cgaggcaacg acgtactggt ttttgttaat ccactataaa
     5461 tgccgtctga aaacctgttt gcaggttttc agacggcatt gttttcgtcg ccggttcaaa
     5521 cttcaatccg attgcgacac ggtaaccggt atgccgcgca agcgcgcaag cagcgcgtcc
     5581 gctttctgtt tctgcgcggc aaacgccgcc ttgtccgcct gcgtcaattc gggtgtcggc
     5641 aatgcgaccg aaacaggatt aacgggctgc ccattgatgc gcgcctcgta atgcaggtgc
     5701 ggccccgtcg aacgcccggt cgaaccgaca aaaccgatga cctcgccgcc gcgcacattg
     5761 ccttgtgcct gcgaaaacgc gctcaagtgc gcgtacagcg tttccacacc gttggcgtgg
     5821 cgtatcatca ccgcgttgcc gtatccgccc ttccggcctt taaaggtaat cacgccgtcg
     5881 gcggaagccc tgaccggcgt tccctgcggt gcggcataat cgatgcccgt gtgcagccgc
     5941 caagtgtgca ggatggggtg catacggtag ccgaacggcg aagaaatgcg cgtatagacc
     6001 agcggctcga tgttgaagcc gcctttttcc tgcaacaccc tgccgtcttc atcataataa
     6061 ttgccgcccc ctccgccttc cttgtccgaa cggtaataga acgcctgatg ccttgtgccg
     6121 cccttaacga cttcagccgc caaaatatcg cccgccgcca cctgctgccc gtggaaatac
     6181 aggctgtcgt aaatcaggcg cacggcatcg ccttccttca aaccgtcaag gctgaagcgg
     6241 ccggcgaaaa tcccgcttaa ggattcgcgg atttcgacgg gcacttccgc ccgcgccagc
     6301 gaaccgcgcg ccgacgtttt gaccacgacc gaacgcagcg tcggcaaaac cttcatatcc
     6361 gcctcagaag ccgaccgccg ccatatgccg cctttctttt ccaaagcgac cagattgcgc
     6421 tcgccgtctt cgtcggtaaa aaactgtact tcgcgcgcgc cgccgtcgcc gccgaccaaa
     6481 acatgaaccg actggtcggc acgcaaatgc cgcaaatcgg cttcgccgcc atatttttcc
     6541 gtgattcggg caatctcgtc ccgcgccata cccgaacgcg ccagcacgtc cgccagcgag
     6601 tcgcccggct gcaccgcctc ctgcacccaa tatgccgtct gaacgccgct gccgccccaa
     6661 gacagcggcg gcagattttg ttccacgcgc tgcggtctga cgcgttccgt cctctctgtc
     6721 aaagcaatgt atgccgccga caccaaaata atcgaaacgg caagcgcgcg cagcgcgtat
     6781 ttccgatgtt ttgccgaaag tgggaagaca gccatattgt tcctttttga cggcgtttgc
     6841 gccgaatcct ctataatatc cgcccgatcc gcatttgtca gacatcaaac gatgaaactc
     6901 accctcgccc tcccctcgct caatttggat gaagacgaaa tccgaatacc tctatgcctg
     6961 cccgccttca acaaaatcct gcaatacggc tcgctgcacc gccaaagctg cacggcttcg
     7021 gcattttacg cgcgttattt gtggtgcggc agactggcgg aacgcgcggc gcaaagcctg
     7081 aatatgccgt ctgaaaccgt cgcgctcgcc acgcccgtct ggcaaaagat ggggatgcat
     7141 caggcaaatg tgctaacggc ggaatatctg aacgtcggta cggatgaagc ggaacggctc
     7201 tgccgcgacc tgtcggcgtt ttacggcgac attccatggc gtttcgttcc cgtcctgccc
     7261 gaattatggc tggtttccct tccttgcgcg taccgctggg gcgcgaagcc cgttttggac
     7321 ttgggcggat tgttgggcgc ggacgatcag ccggacgggg aagacgcgtt ggaatggctg
     7381 cgcgtccaaa ccgaaatcca aatgtggctg gcggcgcacc ccgtcaacca taaccgcaag
     7441 aaacgcgggc tgcccgagtt gaacggctta tggctttggg acagtctgca cggaagcagt
     7501 caaggcggca cgcttttcgc cgatacggtt tggagccgtt tccaccccga ccgccgcgca
     7561 ttgcccgaca acttccgcgc ctatgaagaa acggcggcat acctacccga cacgcaccat
     7621 atcctgttta tggacgattt gcgcctgacc gccctgacag gggacaggga gcggtatgcg
     7681 gcaatattgc agcagtggga agaacgctgg ttcgcaccgc tttacgaagc cgtccgcatc
     7741 ggcaaaatca aacggctgga catcgccacg gacggacaac acggcggtac gctgaccttc
     7801 aaacccgccg acaggtggaa attttggcgc ggcgcgaaaa cctttgacgg aatctggtga
     7861 acccgcccgc cgcaaccgcg acaatgccgt ctgaagcccg aatcgggttt cagacggcat
     7921 tttacctcgc atcgccgtta tgccggaaaa accggaatgc gtttccgcac acgcggcggc
     7981 acgcaaagca ccgcccgaaa gccgccgatg cccgccgtga taccgccgcc ggcagggttt
     8041 cctccgaaaa ggaacagcaa tcagaacgtt ttattaaact cgacaaacgc ccgatttttc
     8101 tcgtattcgt tgaacacatc gttactccgc gtttcgcggt gcgacaacgt caggcgcggc
     8161 gtgatgcctt tgaaatgcaa tgcccggtgc caaaggctca aggatgtgtt caattcttta
     8221 tccctgcgcc tttccccttt aaaaccgctg aaaaagccgg gtttttcata atgccgtttc
     8281 gccgcgccga ggcgcaacag cgaagacagg ccgctgccgc cccattcctg cccccaggca
     8341 aagcgcaggc cgtaacggtt gaaattgtcg ccccggtcgg cggggttgcg ctcgcggtaa
     8401 aaatccaaac cgcccatcca atattggcgc gcattccggt aaaacaccag cgaattggaa
     8461 atttgcaaat gggtattgtc ggaacgcgcc cggcgcgtat tcttcaaacg cccccactcc
     8521 gccgaagaca acgtttgcca tttcggggtt tgccaacggt tgaaataaag gcgtgcgccg
     8581 ttggtgtaag aataagcgtc gttgccgtag gtgcggcgtt cgtggaacac tgccagcccg
     8641 gcatctttgc gccggtcggc aaaaccgatg ccgccggaaa cgcctgccgt catatcgttg
     8701 aatttcttat tccccggata aaccctgccg gacacgtcgc cgccagccgt cgtgtaccag
     8761 ccgtttttca gcgaccattt tttctccgcg ccgagccggt aattgaccgc cgtgccgtcc
     8821 acctgtttcg ggaaagtcca tttgccgtac tgctgccgtt tcggggcttg gttgatattg
     8881 tgttcgcggg tgacgctgaa gccgccattt accttccacg catcgcgttc gcgcaatgcc
     8941 ttgcggtaca gctcgacctg ctccatcagc tgcggcggca ggttttccgc cttcaggcgg
     9001 tcgaactggt ctgccgccgc ctcgttctgc ctgttttcaa acaatgccgc cgccaaacgc
     9061 atacggacgg cgggcgcgtc gggttgggcg gcaatcaatt cccggtaatg ggaaatcgcc
     9121 tccttcaccc taccgtctgc ctgcgccaaa atcccttgtg cataaagtgc caacatctta
     9181 tcctgctgcg cctgttgtag gtaaatcggc aaaataacgc ggataccggc aatattgttt
     9241 gagaccactg cggaatacat cgcgcgggac aacaattcgg gatttttcag cagggtttct
     9301 ccgtcaatct gcaaaacttt tcctttttcc cgcacctgcc ccggtacctt ctccctgtcg
     9361 attggtttga cctccgcttc atgaagcctg aactcgggac ggcttctcaa atccggttcg
     9421 cgcggtgttt cttcggcata tgccgcgctt gccaataaag gcagcagcag catccatctg
     9481 tttcgtgcag gcataaatgc cttcccacaa aaataaaaaa taaccattat caatcggcgg
     9541 attgtatcag ttttttatgc cgctgttcca aaccctgccg cccgatgccg cgacaatgcc
     9601 gtctgaagcc agaatcgggt ttcaaacggc ggcaaaaaac cggcggtttt ccgccggttt
     9661 catcatgatg ccccgccctt cggggcggca gggttcggat tggtttgcgg ggcggcgcgc
     9721 ggggccgtgc cggtgtgccg cctgtgcgtc aaaacatttc ccgacgcatc aaaacagcca
     9781 tttgagcgac aatgcggctt ctttgtcgcc gtccgtcctt ttgccgtatc cgatgcgtgc
     9841 ggacatatgg cctttccaac cggcttcaat gccgaaccgc ccttcgagcg ccgtcctgcc
     9901 tgccagcgtc tgtttttcgc cgtccatttc cacgccgaaa gattttgacc tgtgcaaaac
     9961 attaaaagcg gcgaaaggct gaagattgac accgttacgc aaagcaaaac gggtttttgc
    10021 ccgaataccg gcgcggcttt gccactgacc gctgccgagc agtccgaccg ccgtcccctc
    10081 gctgtcggta aagccgccgt ttacgcccaa gtaggtaaac tgagcctgcg gttgcaggta
    10141 aaaccgcaca ttattgcctt ttccgacaac gccttccgcc acaagcgcgt tgtagccgcc
    10201 ttcgacagaa gccgtccaac ctttggtttt gtagcgttcc acacggtttt catcattgat
    10261 gcggtgtttg aaacgttggt attgcaacca gccgtccaaa tacgcacccg tttgtttatc
    10321 gcgcaactga tgccacgcag cataaacacc cccgccataa ccatgcaaat aactgcctgc
    10381 cgcaccgcct ttgccgttga ctgatgcgtg ctggccggcc ctgccgccca tcacgccgat
    10441 tgccagccgg ctgccttcat tttgccgtac aaacacctcg ccgccgattt gcacgccttt
    10501 gcgccgcccg tccgcagccg cgccgccccg tatattttga tgcgaccgac cgccgatgaa
    10561 gcgcagccac aatttttgac gggacggatc ggcggcatac acgtcgccgc ccctgtcggc
    10621 ggcacgcaac ccaaacaaag tatttgccgc ataagcctgt tgggcatata aaaccgcttc
    10681 cgcctcaggg atagccaaac gctgcacgcc caagcaaaat ccgccttcgc attgcttgag
    10741 caataattcg tacagtccct gccggtaatt ttgtttaaac gcaaacgaat tagggtctgc
    10801 cttttccgcc gcaatcagtt tgcgcccgtc gagcgttttc agattttccg gccggcgttc
    10861 caaaaccaca ttggattttc cgctgacgtt ttgttcaaag gtcagggcgg gttcgtccga
    10921 ctcccgcacg tcgtagccga acaggaaatc cgcgccgccc tgatacgctt tatggacggt
    10981 cagtttttca tctttcgtgt ttaggcggat gcgggcatta tcggaagttt ccagcgtatg
    11041 gatgtcggaa tggcggcgcg gttcccaaag ggaatctttc agcgtcatct tggtcagttc
    11101 caacacctgt ccggcgacgt gggatttgtt ttcgattttg acgtgtaatt ttttattgaa
    11161 gatgttgttg agactagtct gtgatgtatt actatgagga gtgagtacgg aatcttctac
    11221 caatttatta attaaatcgg ggtttttctg tttgagtata ctaaattttg gtccaagctg
    11281 ttctatatac gcctcctcag tccgtttttt attttcttcc caagcttcgg gtcttgtttt
    11341 gtataaatcc tgtaattgct tcttaaccgc atcctttaaa ttatccccgt aagtatctgt
    11401 aatatatttc ttaacaacgg gcatattatc gacggcgagt atgccgctat tgtagttttt
    11461 accttggata ttgatttcgt catacccata ttcggatgaa ttttgatcgg ttttaccgct
    11521 ggaaaaataa tgggaagtgc cgggtttcgg cttgtctgaa aatgaaaaat cggcatcgtc
    11581 gccgattttg gtagaacgag tatttgaacc aagctgagct ctgaacatac cgaagcaatc
    11641 aaaagatatg ctgcacgggc cgcgccaaac gtgggaattt ctgtcttccg ccgcttctaa
    11701 aataaatttg tttttaatct cggcttcttt gacgggatcg tacgcatccg aacctcaaac
    11761 atatggcgtg caaaacagcg ataaaacaga taatgttaat aga
//
LOCUS       DAXIFD010000053        11689 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.053, whole genome shotgun sequence.
ACCESSION   DAXIFD010000053 DAXIFD010000000
VERSION     DAXIFD010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11689
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.053"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            97..813
                     /locus_tag="ACFOCN_000986"
     CDS             97..813
                     /locus_tag="ACFOCN_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HFC6970150.1"
                     /translation="MNFENDDIIHAPTTSSLILEERHDSELFRVYALILDGITDQVLL
                     PGKKLTESELCRQMVCSRNTVRGALSLLAHDKIVDLQPNRGAFVHVPDLKEMQDVFNA
                     RIEMETMILNILADLPDLETRLKPLYAMIRREEEASGRGDRVGWNRLSNAFHVELARL
                     VGNDVLFDIMNTLCARSSLIVAVAGVHREEKHAINTHTHSEHREILDLLLAGRRNRVV
                     KILRRHLGNCMERLEKTLED"
     gene            962..1864
                     /locus_tag="ACFOCN_000987"
     CDS             962..1864
                     /locus_tag="ACFOCN_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HFC6970151.1"
                     /translation="MDSLMTLLSVLVPMFAGFFIRVPKPYLPALDKVLSVLVYAVLLL
                     IGVSLSRVEDLGSRLDDMALTVLWLFVCTVGANLLALAVLGKLFPWRIKGKGKGVSVG
                     VSGSVGQLGCVLLGFAFGKLMRDIWMPSESAGMYCLMLLVFLIGVQLKSSGVSLRQVL
                     VNRRGIRLSVWFMLSSLSGGLLFAASTDGVSWTKGLAMASGFGWYSLSGLVMTEAYGA
                     VWGSIMLLNDLARELFALAFIPLLMKRFPDAAVGVGGATSMDFTLPVIQGAGGLEVVP
                     VAVSFGVVVNIAAPFLMVVFSTLG"
     gene            1907..2680
                     /locus_tag="ACFOCN_000988"
     CDS             1907..2680
                     /locus_tag="ACFOCN_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HFC6970152.1"
                     /translation="MKPKIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIREL
                     EEAGSLKRHHGGASSGGNLPEGLPADRQTRCQNEKNAIARLIAEHIPDGSSLFVSIGT
                     TMEAVVSELVRRRGSLRVITNNIHAASIASARTDYTVIITSGVVRPLDGGITGVATVD
                     FINQFKVDYAVMSTHGVESDGSLLDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNAL
                     VRLGDITAFDKVFTDRLPDTAMQKMLKEAGVECLIADAV"
     gene            2792..4480
                     /locus_tag="ACFOCN_000989"
     CDS             2792..4480
                     /locus_tag="ACFOCN_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HFC6970153.1"
                     /translation="MLNKDQFADNHFIRTFIEEDLKSGKHETIQTRFPPEPNGYLHIG
                     HAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEYVNAIKEDVEWLGFHWAGEPRFAS
                     NYFDQLYDYAVGLVKDGKAYVDDLTPEEMREYRGTLTEAGKNSPYRDRSIEENLDLFT
                     RMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIRRAHHHNTGDKWCIYPMYDYTHC
                     ISDAIEGITHSLCTLEFEAHRPLYDWVLDNIPAPHATRPRQYEFSRLELLYTITSKRK
                     LNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLFAKRAGISKSENIVDMSVLEGA
                     IREELENSAPRLMAVLNPLKVTLTNFETGRTQSRRAAFHPNHEEMGEREVPISQTIYI
                     EADDFAENPPKGFKRLIPGGEVRLRHGYVIKCDEVVKDEAGNVVELKCSIDHDTLGKN
                     PEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTVERPDAVRGEDGEYLPFTDFLNPESVK
                     EITAYAEPAAKDLPAESRWQFERIGYFVTDRKDHGKDTPVFNRTVTLKDSWQPK"
     gene            4573..5529
                     /gene="gshB"
                     /locus_tag="ACFOCN_000990"
     CDS             4573..5529
                     /gene="gshB"
                     /locus_tag="ACFOCN_000990"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HFC6970154.1"
                     /translation="MKVLFIADPMASFKTYKDTTYAMMREMAKRGWRLFHTLSGELSV
                     KNGLVVADASAFEFLGAQDDHDKNWFAAADKVQTALKAFDAVIMRTDPPFDMQYLYAT
                     QLLTLAEQQGAKVFNSGQAMRDFNEKLAILNFSRFTAPTLVTTRSADVRAFLKEHGDI
                     IIKPLDGMGGMGIFRLTEKDPNIGSILETLMRLDSRTIMAQRYIPEIVHGDKRILIIG
                     GEVVPYALARIPQNGETRGNLAAGGRGVAQELDGRDREIAETLAPELKRRGILLAGLD
                     VIGSNLTEVNVTSPTGFQEIMKQKGFDVAAMFADAVAAWSVR"
     gene            5841..6224
                     /locus_tag="ACFOCN_000991"
     CDS             5841..6224
                     /locus_tag="ACFOCN_000991"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HFC6970155.1"
                     /translation="MEPSSYAAEKKGKGGIRRVINAFGYSIDGIAAAYRYEAAFRQVL
                     WLNVLLVCAAFFWVSETAVRLPLIIASFVSVIVELFNTAVEAAVDHTSTEKHELAKRA
                     KDAGSAAQLFAMLMLAAVWLSALFG"
     gene            6339..6812
                     /locus_tag="ACFOCN_000992"
     CDS             6339..6812
                     /locus_tag="ACFOCN_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HFC6970156.1"
                     /translation="MKKLLAAVMMAGLAGAVSAAGVHVEDGWARTTVEGMKIGGAFMK
                     IHNDEAKQDFLLGGSSPVADRVEVHTHINDNGVMRMREVKGGVPLEAKSVTELKPGSY
                     HVMFMGLKKQLKEGDKIPVTLKFKNAKAQTVQLEVKIAPMSAMDHGHHHGEAHQH"
     gene            6938..8041
                     /gene="mnmA"
                     /locus_tag="ACFOCN_000993"
     CDS             6938..8041
                     /gene="mnmA"
                     /locus_tag="ACFOCN_000993"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HFC6970157.1"
                     /translation="MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWED
                     DDNDEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDV
                     LCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLK
                     PFQLERAIFPLGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTD
                     NGKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDH
                     PLLYTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELVFDEPQW
                     AVTPGQSAVLYDGDICLGGGIIQTTDKPVIITR"
     gene            8112..9782
                     /locus_tag="ACFOCN_000994"
     CDS             8112..9782
                     /locus_tag="ACFOCN_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HFC6970158.1"
                     /translation="MEKIWLDSYEKGVSAEIDITQYNSISDVFRQSVEKFARLPAFQN
                     MGKTLTYAETGKLATDFASYLQNVLKLPRGERVAIMMPNVLQYPIALFGILQAGLVAV
                     NTNPLYTPRELEHQLKDSGTTAIIVLENFANTLELVLPRTQIKHVIVASVGEMFGLLK
                     GSLINFIIRKIKKMVPEYRIRETVSFQTALKEGAKHVFQPVALNREDTALLQYTGGTT
                     GVAKGAVLSHGNICANMLQAKEWIKNQLREGKETVIAALPLYHIFALTVNLMIFANAG
                     SKIILITNPRDMKGFIGELKKQRINVFIGVNTLFNAMVNRPDFAEVDFSELRLTLGGG
                     MATQKAVAEKWKKITGTPIVEAYGLTEASPGVCCNPLNIESYSGSIGLPVSSTEVELR
                     DANGKEVPVGQPGELWVKGPQVMQGYWNRPEETAKAIDARGFLETGDIAVMDEKGWLK
                     LVDRKKDLIVVSGFNVYPNEIEEVIAHHGKVMEVACIGVPDEKTGEALKVFVVRKDPS
                     LTKEELIAFCRTELTAYKVPKDIEFRDELPKSNVGKILRRELRQSTGK"
     gene            9894..11528
                     /locus_tag="ACFOCN_000995"
     CDS             9894..11528
                     /locus_tag="ACFOCN_000995"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HFC6970159.1"
                     /translation="MTKFIFVTGGVVSSLGKGIAAASIAAILESRGLNVTMLKLDPYI
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIDSTMTRRNSFSTGQVYENVIAKE
                     RRGDYLGGTVQVIPHITDEIKRRIHEGAAGYDVAIVEIGGTVGDIESLPFLEAIRQMR
                     SQLGRNNTLFAHLSYVPYIAAAGEIKTKPTQHTVKEMLSIGLQPDILICRMDRTMPAD
                     ERRKIALFCNVEERAIVGSYDVDSIYECPEMLHDQGIDNIITEQLQLNVQQADLTAWK
                     KIVHAIQNPKHTVKIAMVGKYVDLTESYKSLIEALKHAGIHTETDVQITFVDSESIEK
                     NNGDVSMLKDMDAILVPGGFGSRGVEGKIAAVRYARENNVPYLGICLGMQIALIEYAR
                     DVAGLKGANSTEFDLKCAAPVVALIDEWQTADGSVETRDESADLGGTMRLGAQEVELK
                     AGSLAAKIYGSEHIRERHRHRYEVNNNYVPTLEQAGLVIGGVSAGRERLVETIELPNH
                     PWFFACQFHPEFTSNPRKGHPLFTAFVKAALNNKKA"
BASE COUNT         2890 a         3152 c         3104 g         2543 t
ORIGIN      
        1 atttgtgcaa tgctttaatt cctctgacac gatttgaaac acagccgcct taaaacatct
       61 taaaaaattt gaaagcgtaa aaatacggaa aacatcatga actttgaaaa cgacgacatt
      121 atccatgcgc cgaccacgtc ttccctgatt ctcgaagagc ggcacgattc ggagctgttc
      181 cgtgtttacg ccctgatttt ggacggcatt accgatcagg tgctgctgcc cggcaaaaag
      241 ctgaccgaat ccgaactttg ccgtcagatg gtgtgttcgc gcaacaccgt ccgcggcgcg
      301 ctgtcgcttt tggcgcacga caagattgtc gatttgcaac ccaacagggg cgcgttcgtc
      361 cacgttcccg atttgaaaga aatgcaggat gtgttcaatg cgcgcatcga aatggagacg
      421 atgattttga atatcctcgc agatttgccg gatttggaaa cgcgcctcaa gccgctttat
      481 gcgatgataa ggcgcgaaga agaggcttcc ggcaggggcg accgcgtcgg ctggaaccgc
      541 ctgtccaatg ccttccacgt cgaactggcg cgcctggtgg gcaacgatgt gctgttcgac
      601 attatgaaca cgctgtgcgc gcggtcttcc ctgattgtcg ccgtggcggg cgtgcatcgc
      661 gaggaaaaac acgccatcaa tacgcatacg cattccgaac accgcgaaat cctcgacctg
      721 ctgctggcgg gcaggcgcaa ccgcgtggtc aaaatcctgc gccgccattt gggcaactgt
      781 atggaacgct tggaaaagac tttggaagat tgaatgccgg agcggataag ccgcctgaac
      841 cttcaggcgg ttttttaatg gcgaacctga tgccgtctga aatatggatg cgggtatctg
      901 caattttcag acggcaattt ttaaaccgca tatatcatgc ggcaataaag gaggtcagga
      961 gatggacagc ctgatgacat tgctttcggt attggtaccg atgttcgccg gattttttat
     1021 ccgtgtgccc aagccttacc tgcccgcttt ggacaaggtg ctgtcggttt tggtgtatgc
     1081 cgtgctgctg ctgatcggcg tatcgttgtc gcgcgtggag gatttgggtt cgcggttgga
     1141 cgatatggcg ttgacggttc tgtggctgtt tgtttgtacg gtcggggcga acctgcttgc
     1201 tttggcagtg ttgggaaagt tattcccgtg gcggataaag gggaaaggga agggcgtttc
     1261 ggtcggcgtg tcgggcagtg tggggcagct cggatgcgtg ctgctcggat ttgcattcgg
     1321 caaactgatg cgcgatattt ggatgccgtc tgaaagcgcg ggcatgtatt gtctgatgct
     1381 gctggtgttc ctcatcggcg tacagctcaa aagcagcggc gtatcgttgc ggcaggtttt
     1441 ggtcaaccgc aggggtattc ggttgtcggt ctggtttatg ctttcatctc tttcgggcgg
     1501 gctgctgttt gccgcatcga cagacggtgt gtcgtggacg aaaggtttgg cgatggcttc
     1561 cggcttcggt tggtattccc tctcgggttt ggtcatgacc gaggcttacg gcgcggtatg
     1621 gggcagcatc atgctgctga acgatttggc acgagagctg tttgcactgg catttatccc
     1681 gctgctgatg aagcgttttc cggatgcggc ggtgggggtt ggcggtgcga ccagtatgga
     1741 ttttacattg cccgtgattc agggtgcggg cggtttggaa gtcgtgccgg tagcggtcag
     1801 cttcggcgtg gtggtcaata ttgccgcccc gtttctgatg gtggtgtttt ccacgctggg
     1861 ctgaacacgg taaaatcggc atcccgatgc aaggaggcag aaaacgatga aaccgaaaat
     1921 ccaaaggcac ggagagattt taagccttgt ccgccggcat cagtttatgt cggtggacga
     1981 gcttgccgcc gcattggacg ttaccccgca gacgatacgc cgcgacatcc gcgagttgga
     2041 ggaggccggc agcctgaaac gccatcacgg cggcgcatct tcgggcggaa acttgccgga
     2101 gggcctgccc gccgaccgcc aaacccggtg tcaaaacgaa aaaaacgcca ttgcccggct
     2161 gattgcggaa cacatccccg acggttcgtc gctgtttgtc agtatcggca cgacgatgga
     2221 ggccgtggtg tcggagctgg tcaggcggcg cggcagcctg agggtgatta ccaacaatat
     2281 ccacgccgcc tcgattgctt cggcgcggac ggattatacg gtcattatca cttctggagt
     2341 cgtccgtcct ttggacggcg gtattaccgg cgtggcaacc gtcgatttta tcaaccagtt
     2401 caaagtcgat tatgccgtga tgagtacgca cggcgtggaa agcgacggtt cgcttttgga
     2461 cgacgactac aaagaagtca gcgtgatgca ggcgatgatt gccaatgcgc gcgtccgctt
     2521 cctcggcgtg gaccacagta aattccgcag caacgcgctg gtcaggctcg gcgacattac
     2581 ggcgtttgac aaagtattta ccgaccggct gcccgatacc gcgatgcaga agatgctgaa
     2641 agaggcgggg gtggaatgcc tgattgccga tgccgtctga acgctatgtc aaagcgcgca
     2701 agtcgggtac aataaacaca tcatcaaacc gcttcagacg gcataaggaa ccgccccaat
     2761 gccgtctgaa gccatctgtt caaagaaaac tatgctcaat aaagaccaat ttgcggacaa
     2821 ccattttatc cgcaccttca tcgaagaaga cctcaaaagc ggcaaacacg aaaccatcca
     2881 aacccgtttt ccgccggagc ccaacggcta cctgcacatc ggacacgcca aatccatctg
     2941 cctgaacttc ggtttggcgt atatttacga cggcttgtgc aacctgcgtt ttgacgatac
     3001 caaccccgaa aaagaaaacg acgaatacgt caacgccatc aaagaagacg ttgagtggct
     3061 cggtttccat tgggcgggcg agccgcgttt cgcttccaac tatttcgacc agctttatga
     3121 ctacgccgtc ggtttggtta aagacggcaa agcgtatgtc gatgatttga cgccagaaga
     3181 aatgcgcgaa taccgcggta cgctgaccga agcaggcaaa aacagccctt atcgcgaccg
     3241 cagtatcgaa gaaaacctcg acctgttcac gcgcatgaaa aacggtgagt tccccgacgg
     3301 cagcaaaacc ctgcgcctga aaatcgacat ggcatccggc aacatcaata tgcgcgatcc
     3361 ggtcatctac cgcatccgcc gcgcccatca ccacaacacc ggcgacaaat ggtgcatcta
     3421 tccgatgtac gactacacgc attgtatttc cgatgccatc gaaggcatca cgcattcctt
     3481 gtgtacgctc gaatttgaag cccatcgtcc gctgtatgac tgggtgttgg acaacatccc
     3541 cgcgccgcac gccacacgtc cgcgccaata cgagttttca cgcttggagc ttttgtacac
     3601 cattacctcc aaacggaaat tgaatcagtt ggttgtggaa aaacacgttt ccggctggga
     3661 cgatccgcgt atgccgacca tttccggtat gcgccgacgc ggctacacgc ccgaagggct
     3721 gcgcctgttt gccaaacgcg ccggtatttc caaatctgaa aacatcgtcg atatgagcgt
     3781 gttggaaggc gcgattcgcg aagagttgga aaattccgcc ccacgcctga tggcggtgtt
     3841 gaacccgctc aaagtgaccc tgaccaactt tgaaaccggc agaacccaaa gccgccgtgc
     3901 cgcgttccat ccgaaccacg aggaaatggg cgagcgcgaa gtacctattt cacaaaccat
     3961 ctatattgaa gccgacgact ttgccgaaaa tccgcccaaa ggcttcaaac gcctgattcc
     4021 cggcggcgaa gtacgcttgc gccacggcta tgtcatcaag tgcgatgaag tcgtcaaaga
     4081 cgaagcaggc aatgtggttg aactcaaatg cagcatcgac cacgacacct tgggcaaaaa
     4141 tccagaaggc cgtaaagtta aaggcgtgat tcattgggtt tccgccgaac acgccgccga
     4201 aatcaaagtc cgtctgtacg accgcctctt taccgtcgag cgtcccgatg ccgtgcgcgg
     4261 cgaagacggc gaatacctgc cgttcaccga tttcctcaat ccggaatccg tcaaggaaat
     4321 caccgcctac gccgaacctg ccgccaaaga tttgccggca gaaagccgtt ggcagttcga
     4381 gcgtatcggc tacttcgtaa ccgaccgtaa agaccacggc aaagacacgc cggtgtttaa
     4441 ccgcacggtc acgctgaaag attcttggca gcctaagtaa aaccccatcc ttgccgtctg
     4501 aatattgttc ggacggcatt tcccctttgc ccgcgaaatg cggcacattc ggcacaccgg
     4561 aaaggaaata tgatgaaagt cctctttatc gccgacccga tggcaagttt caaaacctac
     4621 aaagacacca cctacgccat gatgcgcgag atggcaaaac gcggttggcg gctgtttcat
     4681 accttgagcg gggaattgtc ggttaaaaac ggtctggtgg ttgctgatgc gtctgctttt
     4741 gagtttctcg gcgcacaaga cgaccacgac aaaaactggt ttgccgccgc cgacaaagtt
     4801 cagacggcat tgaaagcatt tgatgccgtg attatgcgta ccgatccgcc gttcgatatg
     4861 caatacctct acgccacaca gcttctgacg ctggcggagc agcagggcgc gaaggtcttt
     4921 aacagcggac aggcgatgcg tgatttcaat gaaaaactgg cgattttgaa cttcagccgc
     4981 tttaccgcgc ccacgctggt aacgacccgt tccgccgatg tccgcgcatt tttgaaagaa
     5041 cacggcgaca tcatcattaa accgctggac ggtatgggcg gtatgggtat tttccgcctg
     5101 accgaaaaag atcccaacat cggcagcatc ctcgaaaccc tgatgcggct tgattcccgc
     5161 accattatgg cgcaacgcta cattcccgaa atcgtacacg gtgacaaacg catcctgatt
     5221 atcggcggcg aagtcgtccc ctatgctttg gcgcgtatcc cgcaaaacgg cgaaacacgc
     5281 ggcaaccttg cggcaggcgg acgcggcgtg gcgcaggaat tggacggacg cgaccgcgaa
     5341 attgccgaaa cgctcgcccc cgaactcaaa cggcgcggca tcctgctggc cggtttggac
     5401 gttatcggca gcaacctgac cgaagtcaac gtaaccagcc cgaccggatt ccaagaaatt
     5461 atgaaacaaa aaggtttcga cgtggcggca atgtttgccg atgccgttgc cgcgtggtcg
     5521 gtacgttaaa ccgatgccgt ttgaaaggct tttgcttcac aaccgtttgg tttgttcggg
     5581 caggcagggt tttccctcag ccggcaggga tgcggttaat gccgtacgga caccccgccg
     5641 ccccgttttc agacggtata tatagtggat taacaaaaat caggacaagg cggcgaagct
     5701 gcagacagta caaatagtac ggaaccgatt cactcggtgc ttcagcacct tagagaatcg
     5761 ttctctttga gctaaggcgg ggcaacgccg tacaggtttt tgttaatcca ctatattgag
     5821 aacattttga aaggataccg atggaacctt cctcctacgc ggcagaaaaa aaaggcaaag
     5881 gcggcatcag gcgcgtcatt aacgcattcg gctattcgat agacggcatc gccgccgcct
     5941 accgttacga agcggcattc cgtcaggttt tgtggctgaa cgtactgctg gtgtgcgcgg
     6001 catttttttg ggtttccgaa accgccgtcc gcctgccgtt gattatcgcg tcttttgtgt
     6061 cggtcattgt cgaactgttc aacaccgccg tcgaagctgc cgtcgatcat acttcgaccg
     6121 aaaaacacga gctggccaaa cgcgccaaag acgcaggttc tgccgcacaa ttgttcgcga
     6181 tgctgatgtt ggcggcggtt tggctgtctg ccctgttcgg gtaaaacgct tgcagcagga
     6241 tttgtaatcc tttaggatta gtatgtggta tttattattc acttaatcca ctataagatt
     6301 aagcacattc cccgtctgat attataagga gcagaaagat gaaaaaatta ttggcggccg
     6361 tgatgatggc aggtttggca ggcgcggttt ccgccgccgg agtccacgtt gaggacggct
     6421 gggcgcgcac caccgtcgaa ggtatgaaaa taggcggcgc gttcatgaaa atccacaacg
     6481 acgaagccaa acaagacttt ttgctcggcg gaagcagccc cgttgccgac cgcgtcgaag
     6541 tgcataccca catcaacgac aacggcgtga tgcggatgcg cgaagtcaaa ggcggcgtgc
     6601 ctttggaggc gaaatccgtt accgaactca agcccggcag ctatcacgtg atgtttatgg
     6661 gtttgaaaaa acaattaaaa gagggcgaca agattcccgt taccctgaaa tttaaaaacg
     6721 ccaaagcgca aaccgtccaa ctggaagtca aaatcgcgcc gatgtcggca atggaccacg
     6781 gtcatcacca cggcgaagcg catcagcact aatctgctga aaatatttga aatgccgtct
     6841 gaaaaagccc gggctttcag acggcatttt tatgaccgcc tttaaaatgt gttaaaatct
     6901 gcctttaaaa accgccgttt ccaaccatat tctacgcatg aatacgacag caaacccttc
     6961 caatatcatc gtcgggctct ccggcggtgt cgattcttcc gtaaccgccg ccctgctcaa
     7021 gcagcagggt tatcaagtgc gcggtgtgtt catgcagaac tgggaagacg acgacaacga
     7081 cgaatattgc agcatcaaac aggattcgtt cgatgccatc gccgttgccg atattatcgg
     7141 catcgacatc gacatcgtta atttcgccgc gcaatataaa gacaaagtct ttgcttattt
     7201 tcttcaggaa tacagtgcgg ggcgcacgcc gaatcccgat gtgttgtgca acgccgaaat
     7261 caaattcaaa tgctttttgg attacgccgt agggcagggc gcggatacca tcgccaccgg
     7321 acactatgcg cgcaaagaag tccgcaacgg cgtgcattac ctgctcaaag gtttggatcg
     7381 aaacaaagac caaagctatt tcctctaccg cctcaagcct ttccaactcg agcgcgcgat
     7441 ttttccgttg ggcggtttgg aaaaacctga agtccgccgc cttgccgccg aatttaattt
     7501 gccgaccgcc gccaaaaaag acagcacggg catctgcttc atcggcgaac gcccgtttcg
     7561 cgagtttctg caaaaatacc tgccgaccga caacggtaaa atggttacgc ccgaagggaa
     7621 aaccgtcggc gaacacgtcg ggctgatgtt ctacacgctc ggacagcgca aaggtttggg
     7681 catcggcggc gcgggcgaac cgtggtttgt tgcggctaaa gatttgacga aaaacgaact
     7741 gattgtcgtg caaggacacg accatccgct gctctatacc cgcagccttg tgatgaacga
     7801 tttgagtttc acgctgcccg aacgcccgaa ggcaggacgc tatacctgca aaacgcgtta
     7861 ccgtatggcg gacgcgcctt gtgagttgcg ctatttggat gaagaaaccg ccgagctggt
     7921 gtttgacgaa ccgcaatggg cggttacgcc gggccagtct gccgtgctgt acgacggcga
     7981 tatctgtttg ggcggcggca tcatccaaac gaccgacaaa cccgtcatca tcacgcgata
     8041 aaggtaatgc cgtctgaaac ggttttcaga cggcattgtt ccgctcaatt ccactttaaa
     8101 gaccgatacc tatggaaaaa atctggttag acagttacga gaagggcgtc agtgccgaaa
     8161 tcgatatcac gcaatacaat tccatcagcg atgtattccg ccaaagcgtg gaaaaatttg
     8221 ccaggctgcc cgcttttcaa aatatgggca aaacgctgac ttatgccgaa accggcaaac
     8281 tggcgactga tttcgcctct tatctgcaaa acgtcctcaa gctgccgcgc ggcgaacgtg
     8341 ttgccattat gatgccgaac gtattgcaat acccgatagc ccttttcggc attttgcagg
     8401 caggtttggt ggcggtgaac accaatccgc tctatacgcc gcgcgagctg gagcatcagc
     8461 tgaaagacag cggcacgacc gccatcatcg ttttggaaaa tttcgccaac acgctggagc
     8521 tggtgctgcc gcgcacgcag atcaaacatg tcatcgtcgc ctccgtcggc gaaatgttcg
     8581 ggctgcttaa aggttcgctg atcaatttca tcatccgaaa aatcaagaaa atggttcccg
     8641 aataccgtat tcgggaaacc gtttcctttc agacggcatt gaaagagggg gcgaagcacg
     8701 ttttccaacc tgtcgcatta aaccgcgaag ataccgcgct gttgcaatac acgggcggca
     8761 cgacaggtgt tgccaaaggg gcggtgctga gtcacggcaa catctgtgcc aatatgcttc
     8821 aggcaaaaga atggattaaa aaccagttgc gcgagggcaa agaaaccgtt atcgctgccc
     8881 tgccgctgta ccatattttc gccttaaccg tgaatctgat gatttttgcc aatgccggct
     8941 caaaaatcat cctgattacc aacccgcgtg atatgaaagg ctttatcgga gaactgaaaa
     9001 aacagcggat taatgtattt atcggcgtaa acacactgtt taacgcgatg gttaaccgtc
     9061 ctgattttgc cgaagtcgat ttttcagaat tgcggctgac tttgggcggc ggtatggcga
     9121 cccaaaaagc cgttgccgaa aaatggaaaa aaattaccgg tacgcctatt gtcgaagcct
     9181 acggtctgac cgaagccagc ccaggcgtgt gctgcaaccc cttaaacatc gaatcataca
     9241 gcggcagcat cggtttgccc gtctcgtcca ccgaagtcga actgcgcgac gcaaacggca
     9301 aagaagtccc cgtcgggcag ccgggcgaat tgtgggtaaa aggccctcaa gtgatgcaag
     9361 gctactggaa ccgtcccgaa gaaaccgcta aagccataga cgcgcgcggt ttcttggaaa
     9421 ccggcgatat tgccgtcatg gacgaaaaag gctggttgaa gctggttgac cgtaagaaag
     9481 acctcattgt tgtttccgga ttcaatgttt atccgaacga aatcgaagaa gtcatcgcgc
     9541 atcacggcaa agtgatggaa gttgcctgta tcggcgttcc cgacgaaaaa accggcgagg
     9601 cactcaaagt attcgtcgtc agaaaagacc cgtctttgac gaaagaagaa cttatcgcct
     9661 tttgccgcac cgaattaacc gcatataaag taccgaaaga tatcgaattc cgcgacgagt
     9721 tgcccaagtc caacgtcggc aaaatcctgc gccgcgagtt gcggcaaagt accgggaaat
     9781 aaagaaaaga tgccgtctga aaacagccgt ccaccgttca gacggcatcc gtccgtttgc
     9841 cagaaccgcg cgcttcacgt taaaatcacg cattccaata tgggtattcc atcatgacca
     9901 aattcatttt cgtaaccggc ggcgttgtct cctcactggg taaaggtatc gccgccgctt
     9961 ctattgccgc catcctcgaa tcgcgcggct tgaacgttac catgctcaag ctcgatcctt
    10021 atatcaacgt cgatcccggc acgatgagcc cgttccaaca cggcgaagtg ttcgtaaccg
    10081 acgacggcgc ggaaaccgac ctcgacttgg gacactacga acgctttatc gattccacga
    10141 tgacccgccg caacagcttc agcacggggc aggtgtacga aaacgtcatc gccaaagaac
    10201 gacggggcga ctatttgggc ggcacggttc aagtcattcc gcacattacc gacgaaatca
    10261 aacgccgcat ccacgaaggc gcggcaggtt acgatgtggc gattgtcgaa atcggcggta
    10321 cagtcggcga tatcgaatct ttgccattct tggaagccat ccgccagatg cgaagccagt
    10381 tgggacgcaa caacaccctg ttcgcccact tgagctacgt cccctacatc gccgctgcag
    10441 gcgaaatcaa aaccaagccg acccagcaca ccgttaaaga aatgttgagc atcggtttgc
    10501 aacccgacat cctgatttgc cgtatggaca ggacaatgcc tgcggacgaa cgccgcaaaa
    10561 tcgccttgtt ctgcaacgtg gaagaacgcg cgattgtcgg cagctacgat gtggacagca
    10621 tctacgaatg ccccgaaatg ctgcacgacc aaggcatcga caacatcatt accgagcagt
    10681 tgcagcttaa tgtgcagcag gcggatttga ccgcgtggaa aaaaatcgtc cacgccatcc
    10741 aaaacccgaa acacaccgtc aaaatcgcca tggtcggcaa atacgtcgat ttgaccgagt
    10801 cctacaaatc gctgatcgaa gccttgaaac acgcaggcat tcacaccgaa accgacgtac
    10861 aaattacctt tgttgacagc gaaagcatcg agaaaaacaa cggcgacgtt tccatgctta
    10921 aagacatgga tgccatcctc gttcccggcg gttttggttc gcgcggcgtg gaaggcaaaa
    10981 tcgccgctgt gcgctatgcc cgcgaaaaca acgtgccata cttgggcatc tgcctcggta
    11041 tgcagattgc gctgatcgaa tacgcccgcg acgtggcagg tttgaaaggt gcgaattcca
    11101 ccgagttcga cctcaaatgc gccgcccccg tcgttgccct gattgacgaa tggcaaactg
    11161 ccgacggcag cgtcgaaacc cgcgacgaat ccgccgattt gggcggcacc atgcgtttgg
    11221 gcgcgcaaga agtcgaattg aaagcaggca gcctcgccgc caaaatctac ggcagcgaac
    11281 acatccgcga acgccaccgc caccgctacg aagtcaacaa caactacgtt cctacgctgg
    11341 aacaggcagg tttggtcatc ggcggcgtat ccgccggacg cgaacgcttg gtcgaaacca
    11401 tcgaactgcc gaaccatcct tggttcttcg cctgccagtt ccaccccgag tttacctcca
    11461 atccgcgcaa agggcatcct ttgttcaccg cgtttgtcaa agctgcgttg aacaataaaa
    11521 aagcctgata aagcgttact tgatgatcaa aatgccgtct gaaagcctga atgaagactt
    11581 tcagacggca tttttgcaaa tcggggatca taaaagccat caatttaatt tttatggttt
    11641 tatctaatat tgaccaactg aatattgtta agcggggcgt gaaactcaa
//
LOCUS       DAXIFD010000054        11533 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.054, whole genome shotgun sequence.
ACCESSION   DAXIFD010000054 DAXIFD010000000
VERSION     DAXIFD010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11533
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.054"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            121..543
                     /locus_tag="ACFOCN_000996"
     CDS             121..543
                     /locus_tag="ACFOCN_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein Gly1ORF1"
                     /protein_id="HFC6970160.1"
                     /translation="MKKTFLSAVLLLSAATQTVWADTVFSCKTDNNKYIEVQKINRNL
                     YEYSFGSAAKKEIAIRNSKADLLGRSDRWQGWGRGRWATMKFQNGEFMYTVDAGFDSV
                     THAVGSGVLVERRGKEIARFDCTSKTAQANFDDDDFAW"
     gene            561..1322
                     /locus_tag="ACFOCN_000997"
     CDS             561..1322
                     /locus_tag="ACFOCN_000997"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HFC6970161.1"
                     /translation="METVKPIMLIVRPSGRAKDDVETCRRAEWQAEVLSPIEIETDKA
                     SLKRLPEMYARADAVFWVSPTAVETAVPYLNLSDGIKMHISVGQGSRRALERCLGRTV
                     IAPDDGNDSEAVLRLPVWNSLPEGARVLFVRGHGGRDFLMNALQEKGFRTEVAEVYFR
                     RHKPLNFQNFQTENIAAAYITSAELVQSLFAQVPPQFSRFFKSLLYFTHHPRIAEALK
                     REGVCSVETVPTLEAALSHSSISVSDGMVFPGTSN"
     gene            1337..2671
                     /locus_tag="ACFOCN_000998"
     CDS             1337..2671
                     /locus_tag="ACFOCN_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HFC6970162.1"
                     /translation="MGEPENKSSEPVREIQASKEMPSETSSPRKENETEVHIPAAPFI
                     VKQSGSNALAVCALVLAALGLGTSGFLFVQGQNVLKNQELAFNQKIDKAALGESENAA
                     LLKDNLNRQAAIQSELDRLDGNVKANGEQILEMQKSYRELTKGRADWLVDETETILNL
                     AAQQLVLTGNIQTAVGVLEHIDSRLSRFDQAELLPIKQAVSSDLAELKNRPYVDISGT
                     ALRLDRLETAVSGLPLILDGVLKPGVQVKNEAASASWWQNVWEKSLGTLKGLVEIRRL
                     ENNDAMLISPEQAYFVRENLRLRLLDARTALMQRNSEVYQGDLNNAEAAVRQYFDAKS
                     PATQSWLKELAELKALDVRMTADDGLKNSLNAVRAYRDGTRMTAAENQEAEQAASEPA
                     NENTASEPAAASDVKTIEAPSLPSERKPEQPAKKQPVPEKAGRSPSAKGERA"
     gene            2668..3885
                     /locus_tag="ACFOCN_000999"
     CDS             2668..3885
                     /locus_tag="ACFOCN_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HFC6970163.1"
                     /translation="MKTVVWIVVLFAAAVGLALASGIYTGDVYIVLGQTMLRINLHAF
                     VLGSLIAVVVWYFLFKFIIGVFNIPEKMQRFGSARKGRKAALALNKAGLAYFEGRFEK
                     AELEASRVLVNKEAGDNRTLALMLGAHAAGQMENIELRDRYLAEIAKLPEKQQLSRYL
                     LLAESALNRRDYEAAEANLHAAAKMNANLTRLVRLQLRYAFDRGDALQVLAKTEKLSK
                     AGALGKSEMERYQNWAYRRQLADAADAAALKTCLKRIPDSLKNGELSVSVAEKYERLG
                     LYADAVKWVKQHYPHNRRPELLEAFVESVRFLGEREQQKAIDFADAWLKEQPDNALLL
                     MYLGRLAYGRKLWGKAKGYLEASIALKPSISARLVLAKVFDETGEPQKAEAQRNLVLA
                     SVAEENRPSAETH"
     gene            3960..5024
                     /gene="hemE"
                     /locus_tag="ACFOCN_001000"
     CDS             3960..5024
                     /gene="hemE"
                     /locus_tag="ACFOCN_001000"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HFC6970164.1"
                     /translation="MTLLKNDTFLRALLKQPVEYTPIWMMRQAGRYLPEYKATRAKAG
                     SFLDLCKNTELATEVTIQPLERFDLDAAILFSDILTVPDAMGLGLYFAEGEGPKFKRA
                     MQHEADIAKLHVPDMEKLQYVFDAVTSIRKALDGRVPLIGFSGSPFTLACYMVEGGGS
                     KEFRTIKTMMYSRPDLLHKILDTNAQAVTAYLNAQIDAGAQAVQIFDTWGGVLSDAAF
                     KEFSLKYIRQIVAGLKRESEGRRVPVIVFAKGGGLWLESMAQIGADALGLDWTCNIGE
                     ARRRVGNQVALQGNFDPSALFGTPESIRAEVARILADYGHGSGHVFNLGHGINQHADP
                     EHAKILVDTVHELSRQYHGG"
     gene            5202..6581
                     /gene="radA"
                     /locus_tag="ACFOCN_001001"
     CDS             5202..6581
                     /gene="radA"
                     /locus_tag="ACFOCN_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HFC6970165.1"
                     /translation="MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPK
                     NARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELDRVLGGGLVDGAVILLGGDPGIG
                     KSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
                     LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTK
                     DGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVS
                     NPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLA
                     MLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVF
                     GEIGLSGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEA
                     IDICRDSRE"
     gene            complement(6856..7335)
                     /locus_tag="ACFOCN_001002"
     CDS             complement(6856..7335)
                     /locus_tag="ACFOCN_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HFC6970166.1"
                     /translation="MKHILPLIAASALCISTASAHPASEPQTQNETAMTTHTLTSKYS
                     FDETVSRLETAIKSKGMDIFAVIDHQEAAHRNGLTMQPAKVIVFGTPKAGTPLMVKDP
                     AFALQLPLRVLVTETDGKVRAAYTDTRALIAGSRIGFDEVANTLANAEKLIQKTVGE"
     gene            complement(7467..7826)
                     /locus_tag="ACFOCN_001003"
     CDS             complement(7467..7826)
                     /locus_tag="ACFOCN_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6970167.1"
                     /translation="MNIKHLITAALIASAAFAAQAAPQKPLAAAQTAQHPAVWIDVRS
                     EQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSGRRAKAALQELKKAGYT
                     NVANHGGYEDLLKKGMK"
     gene            complement(7865..11479)
                     /gene="recB"
                     /locus_tag="ACFOCN_001004"
     CDS             complement(7865..11479)
                     /gene="recB"
                     /locus_tag="ACFOCN_001004"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HFC6970168.1"
                     /translation="MSAPIQAFDPLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLE
                     QKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAE
                     HHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
                     QAPFDVELTEEDGDRLLVPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSR
                     PYLNFRRPQTDLPQARDAALASWQNICGNLAELKETFWRIHPLLNGNSYRKNSFAELF
                     DALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFRRD
                     LDALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAET
                     LARAVAENWETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIY
                     AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESR
                     LSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNFKGCPLQ
                     SGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRA
                     GTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQT
                     HGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNR
                     AIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAK
                     AQLSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQ
                     DSRETVRQTYDWEKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAE
                     FAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTAS
                     DGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEM
                     AEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRA
                     AAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHH
                     HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK
                     "
BASE COUNT         2521 a         3049 c         3417 g         2546 t
ORIGIN      
        1 tgccgcccta tgtgttgccc taatttggaa ggggttacac ccttttcaaa taaaatctga
       61 tgctgctgcc acgaaggacg gatgtccaag tggcggggtt ttaaccatta aggaaatacg
      121 atgaaaaaaa cgttcctttc tgccgtattg cttctgtcag ctgcgaccca aaccgtgtgg
      181 gcagatacgg tgttttcctg taaaacggac aacaacaaat atatagaagt tcaaaaaatt
      241 aaccgcaatc tttacgaata ttcgttcggc agtgcggcaa aaaaagaaat tgccatacgc
      301 aacagcaaag ctgatctgtt ggggcgttcc gacaggtggc aaggctgggg cagaggccgt
      361 tgggcgacga tgaaattcca aaacggcgaa tttatgtaca ccgtagatgc aggcttcgat
      421 tccgtgaccc atgcagtagg cagcggtgtc cttgtggagc gtaggggcaa ggaaatcgca
      481 cggttcgact gtacgtcgaa aaccgcgcag gcgaatttcg acgatgacga ttttgcctgg
      541 taatcggggc ggataaggcg atagaaacag tgaaacccat catgctgatt gtccgaccgt
      601 cgggcagggc gaaggacgat gtggaaacct gccgtcgtgc cgaatggcag gcggaagtgt
      661 tgagtccgat tgaaatcgaa accgacaaag caagcctgaa acggctgccg gaaatgtatg
      721 cccgtgcgga tgccgtgttt tgggtcagtc cgaccgccgt tgaaaccgcc gtcccgtacc
      781 ttaacctttc agacggcata aagatgcaca tttccgtagg gcagggcagc cgccgtgcat
      841 tggaacgctg tttgggcaga acggtcatcg cgcctgatga cggcaacgac agcgaggcgg
      901 ttttgcgcct gccggtttgg aacagtctgc ccgaaggtgc gcgcgtattg tttgtgcgcg
      961 gacacggcgg gcgggatttt ctgatgaatg ccttgcagga gaaaggtttt cggacggagg
     1021 tggcagaagt ctatttcaga cggcataaac ctttgaactt tcaaaatttc caaaccgaaa
     1081 atattgccgc cgcctatatt acgtccgcag aactcgtgca gtcgctgttt gcacaggttc
     1141 cgccgcaatt ttcccgattc ttcaaatcct tgctatactt tacccatcat ccgcgcattg
     1201 cggaggcatt gaagcgcgaa ggcgtgtgtt cggtcgaaac cgtccctacg ctggaagccg
     1261 cgctttccca ttcttccatt tccgtttcag acggcatggt ctttcccgga acctcaaatt
     1321 aataaggagc aaaacggtgg gcgaacctga aaacaaatca tccgaacccg tacgcgagat
     1381 acaggcatca aaagaaatgc cgtctgaaac ctcttcccca cgcaaagaaa acgaaacaga
     1441 agtacacatt cctgccgctc cttttatcgt caaacagtcc ggcagcaacg ctttggcagt
     1501 ctgcgccctg gtattggcgg cattgggttt gggtacaagt ggttttttgt ttgtccaggg
     1561 acagaatgtc ttgaaaaacc aagagctggc attcaaccaa aaaatcgaca aagccgcctt
     1621 gggcgagtcg gaaaacgccg ccctgttgaa agacaacctc aaccggcaag ccgccataca
     1681 atcagagctc gaccgtttgg acggaaacgt caaagcaaac ggcgaacaaa tcttggaaat
     1741 gcaaaaatcc tatcgcgagt tgaccaaagg acgcgccgat tggctggtgg acgaaaccga
     1801 gaccatactc aatctggcgg cgcaacagct ggtgttgacc ggcaatatcc aaacggcagt
     1861 cggcgtattg gagcatatcg acagccgcct gtcccgtttc gatcaggcag agcttctgcc
     1921 gatcaaacag gcagtcagca gcgacttggc ggaactgaaa aaccgtccct atgtcgatat
     1981 ttccggcacg gcattgcgcc tcgacaggct ggaaaccgcc gtatccggac tgccgctgat
     2041 tttggacggc gtattgaagc cgggcgtaca ggtgaagaac gaagccgctt ctgcttcatg
     2101 gtggcagaac gtatgggaaa aatccctcgg cacattgaag gggctggtcg aaatccgccg
     2161 tttggaaaac aacgatgcca tgctgatttc tcccgaacag gcatattttg tgcgtgaaaa
     2221 cctgcgcctc cgccttttgg atgcgcggac tgcattaatg cagcgcaaca gcgaagtcta
     2281 tcagggcgat ttgaacaatg ccgaagccgc cgtcagacag tatttcgatg ccaagtctcc
     2341 cgccacgcag tcgtggctga aagaactggc ggaattgaag gcgttggatg tgcgcatgac
     2401 ggcggatgac ggtttgaaaa acagcctaaa tgccgtccgc gcctatcgcg acggtacgcg
     2461 catgacggcg gcggaaaatc aagaagcaga acaggcggct tccgaaccgg caaacgaaaa
     2521 cacagcttcc gaaccggctg ccgcatcgga tgtgaagacc atagaagcac cgtccctgcc
     2581 ttcggaacgc aaaccggaac agcctgcaaa aaaacagccc gtaccggaaa aggcagggcg
     2641 ttcgccgtcc gctaaaggag aacgcgcatg aaaacggtag tctggattgt cgtcctgttt
     2701 gccgccgccg tcgggctggc attggcttcg ggcatttaca ccggcgacgt gtatatcgta
     2761 ctcggacaga ccatgctcag aatcaacctg cacgcctttg tgttaggttc gctgattgcc
     2821 gtcgtggtgt ggtatttcct gtttaaattc attatcggcg tattcaatat ccccgaaaag
     2881 atgcagcgtt tcggttcggc gcgtaaaggc cgcaaggccg cgcttgcctt gaacaaggcg
     2941 ggtttggcgt attttgaagg gcgttttgaa aaggcggaac tagaagcctc acgcgtgttg
     3001 gtcaacaaag aggccggaga caaccggact ttggcattga tgttgggcgc acatgccgcc
     3061 gggcagatgg aaaacatcga gctgcgcgac cgttatcttg cggaaatcgc caaactgccg
     3121 gaaaagcagc agctttcccg ttatcttttg ttggcggaat cggcgttgaa ccggcgcgat
     3181 tacgaagcgg cggaagccaa tcttcatgcg gcggcgaaga tgaatgccaa ccttacgcgc
     3241 ctcgtgcgtc tgcaacttcg ttacgctttc gacaggggcg acgcgttgca ggttctggca
     3301 aaaaccgaaa aactttccaa ggcgggcgcg ttgggcaaat cggaaatgga acggtatcaa
     3361 aattgggcat accgccgcca gctggcggat gctgccgatg ccgccgcttt gaaaacctgc
     3421 ctgaagcgga ttcccgacag cctcaaaaac ggggaattga gcgtatcggt tgcggaaaag
     3481 tacgaacgtt tgggactgta tgccgatgcg gtcaaatggg tcaaacagca ttatccgcac
     3541 aaccgccgcc ccgagctttt ggaagccttt gtcgaaagcg tgcgcttttt gggcgaacgc
     3601 gaacagcaga aagccatcga ttttgccgat gcttggctga aagaacagcc cgataacgcg
     3661 cttctgctga tgtatctcgg tcggctcgcc tacggccgca aactttgggg caaggcaaaa
     3721 ggctaccttg aagcgagcat tgcattaaag ccgagtattt ccgcgcgttt ggttctggca
     3781 aaggtttttg acgaaaccgg agaaccgcag aaggcggagg cgcagcgcaa cttggttttg
     3841 gcaagcgttg ccgaggaaaa ccgaccttcc gccgaaaccc attgaaacct tcagacggca
     3901 tcgttgaaat gccgtctgaa aaccatttca cttgacaaac agactgacag aaaacccgta
     3961 tgactctttt aaaaaacgat accttcctcc gcgccctgct caaacagccc gtcgaataca
     4021 cgccgatttg gatgatgcgc caggcggggc gttatctgcc cgaatacaaa gccacacgcg
     4081 cgaaagcggg cagcttcctc gatttgtgca aaaacaccga attggcgacc gaagttacca
     4141 tccaaccttt ggaacgcttc gatttggacg cggcgatttt gttttccgac atcctgaccg
     4201 tccccgacgc aatgggcttg ggactgtatt ttgccgaagg cgaaggcccg aaattcaaac
     4261 gcgccatgca acacgaggcc gacatcgcca agctgcacgt tcccgatatg gaaaaactgc
     4321 aatacgtttt cgacgcggta acttccatcc gtaaagcatt ggacggccgc gtaccgctta
     4381 tcggcttttc cggcagcccg ttcacactcg cctgttatat ggtcgaaggc ggcggcagca
     4441 aagaattccg caccatcaaa accatgatgt actcgcgccc cgatttgctg cacaaaatcc
     4501 tcgataccaa cgcccaagcc gttaccgcct acctcaacgc ccaaatcgac gcgggcgcgc
     4561 aggcggtgca aattttcgac acttggggcg gcgtgttgag cgacgcggcg tttaaagaat
     4621 tcagcctcaa atacatccgc cagatcgtcg ccggactcaa acgcgaaagc gaaggccgcc
     4681 gcgtgcctgt tatcgtattt gccaaaggcg gcgggctgtg gctggaaagt atggcccaaa
     4741 tcggcgcaga cgcattgggc ttggactgga cgtgcaacat cggcgaagca cgccgccgcg
     4801 tcggaaacca agtcgccctg caaggtaact tcgacccgtc cgccctcttc ggtacgccgg
     4861 aatccatccg cgccgaagtc gcacgcatcc tagccgacta cggacacggc agcggccatg
     4921 tcttcaacct cggacacggc atcaaccaac atgccgaccc cgaacacgcc aaaatcttag
     4981 tcgacaccgt acacgagctg tcgcggcagt atcacggcgg gtaagccggc aggaaaccgc
     5041 ccgatatgcc gtctgaagcc gagggatgga aaaataaggc aatgcggcaa tatccgccgt
     5101 gtatggatag tacatgacgg cggcggtgtt gccgcattgg cgcaatccca accgtcccta
     5161 ttttcagacg gcatttttgt tttcagatgc agggaaaacc gatggcaaaa acgcttaaaa
     5221 ccctttacca atgcaccgaa tgcggcggca cttccccgaa atggcagggc aaatgcccgc
     5281 attgcggcga gtggaacaca cttcaggaaa gcttggccgc gcccgagccg aaaaacgccc
     5341 gcttccaatc ttgggcggcg gatacctcga ccgtccaatc cctctcctct gttaccgcga
     5401 ccgaagtgcc gcgcaatccg accggtatgg gcgaactcga ccgcgtattg ggcggcggtt
     5461 tggtcgatgg tgcggtcatc ctgctcggcg gcgatcccgg catcggcaaa tccacgctgc
     5521 tgttgcaaac cattgccaaa atggcgcaaa gccgcaaagt gctgtacgtt tccggcgagg
     5581 aatctgccca acaggtcgcc ctgcgcgcgc aacgtttgga actgcccaca gaaggtgtga
     5641 acctgcttgc cgaaatccgc atggaggcga ttcagacggc cttgaaacag catcagcccg
     5701 aggtcgtcgt catcgactcc atccaaacca tgtattccga ccaaatcact tccgccccag
     5761 gctccgtgtc gcaggtgcgc gagtgtgccg cccaactgac gcgcatggcg aaacagatgg
     5821 gcatcgccat gatactggtc ggacacgtga ccaaagacgg cgcgattgcc ggcccgcgcg
     5881 tgctggaaca catggttgat accgtgctgt atttcgaggg cgaccaacat tccaactacc
     5941 gcatgatacg cgccatcaaa aaccgcttcg gcgcggcaaa cgaactgggc gtgttcgcga
     6001 tgacggaaaa cggtttgaaa ggtgtgtcca acccgtccgc catcttcctc gccagctacc
     6061 gcgacgatac gcccggctcg tgcgttttgg ttacacagga aggcagccgc ccgcttttgg
     6121 tcgaaattca ggcattggtc gatgacgcgc acggcttcac gcccaaacgc ctcaccgtcg
     6181 gactggaaca aaaccgtctt gcgatgctgc ttgccgtgtt aaaccgccac ggcggcatcg
     6241 cctgtttcga tcaggatgtg ttcctcaacg ccgtcggcgg cgtgaaaatc ggcgaaccgg
     6301 cggcggattt ggcggtcatc ctcgcgatgc tttccagctt ccgcaaccgc cctatgcctg
     6361 aaaaaaccgt ggttttcggc gaaatcggct taagcggcga agtccgcccc gtcgcacgcg
     6421 ggcaagagcg gctcaaagaa gcggaaaaac tcggcttcaa acgcgccatc gttcccaaag
     6481 ccaatatgcc gcgcaacgcc aaagagtttc cgaacctgaa aatctacggc gtttcgagtt
     6541 tgcaggaagc catcgatatt tgccgtgaca gcagggaata aacggaaatg ccgtctgaaa
     6601 tcaggtttca gacggcattt ggtttgtggc ggattgaaac aagaaggcat accggcgaca
     6661 gataagattt gcggcaaagt tgcctgtgat atggcaaaac gcacacgccc gtcatccccg
     6721 caagggcggg aatccggaat cgtccgtttc ggcaatgatt gaaaatcacg gtaacccaac
     6781 cgcttggatt cccgacttcg tgggaatgag gggcgtgtgt gtttgatttc catccgccat
     6841 atgtcggcga cgggcttatt cgcctacggt tttttgtatc agtttttcgg cgtttgccaa
     6901 agtgtttgcc acttcgtcaa aaccgatgcg gctgccggcg atgagggcgc gcgtatcggt
     6961 ataggcggcg cgtactttgc cgtctgtttc ggtaacgagg acgcgcaggg gcagttgcag
     7021 ggcgaaggcg gggtctttga ccatcagcgg cgtgccggct ttgggcgtgc cgaagacgat
     7081 gacttttgcc ggctgcatcg ttaaaccgtt tcggtgggcg gcttcctgat ggtcgatgac
     7141 ggcaaaaatg tccatccctt tgctttttat ggcggtttca aggcggctga cggtttcgtc
     7201 aaaactgtat tttgaggtga gggtatgcgt ggtcatagcg gtttcgtttt gggtttgcgg
     7261 ttcgctggca ggatgtgccg aagcggttga aatgcagagt gcggatgcgg caatcagggg
     7321 gagtatgtgt ttcatcgtat ttcctttttc cttttcggtt tgtttatcag gcttcggacg
     7381 gggcggcacg cgccgcgccc gatgttgcgc cgcgtgctgg ggtgtcgtat gccgtctgaa
     7441 agcctgtcct ttcagacggc attgcgtcat ttcatccctt ttttgagcag gtcttcataa
     7501 ccgccgtgat tggcaacatt tgtataacct gcttttttca gctcctgaag ggcggctttg
     7561 gcacgccgtc cgctgcggca gtagaggttg accggcgtgt ctttgtcggg cgcggcttcg
     7621 tgtatgcggc ggacgatttg gtcgacgggg atgttgaccg cgttgtgcaa atgaccttcg
     7681 ctaaattcct gttcggaacg gacatcgatc caaacggccg gatgttgcgc ggtttgggcg
     7741 gcggctaggg gtttttgcgg ggctgcctgc gcggcaaagg cggctgaggc aatgagtgcg
     7801 gcggtaatca ggtgtttgat attcataggg ttctcctgcg gttgtcgtct taagggacgg
     7861 gaagttattt tatctgttcc aaagcggcgg catctatgtc ccaacgccaa acgccgccgc
     7921 ctttgccatc caatccgcgc aaaaacaggt agcggacgga aacggcggcg ggcggttgtc
     7981 cgcgcagttt gaagtagcgt gcggcggcaa cggcgtaaat cagcgcctga aggtaatagt
     8041 ggtggtgcgc gacggcttcg tccatcgcct gttgcgtgta ggcggatgcg tccgcgccga
     8101 gatggtttga tttgtagtcg atgacgcaga tattgccgtc ggggtcttgg cagaccatat
     8161 cgataaagcc gtttaaaaag ccgttgacgg tgtggaagtc gagcgtttcg gcggcggcac
     8221 ggcagacttc gggcaatcgg atatcgtcgc gggcaaacca gtcgcgcagc cgtttgaggc
     8281 cgaagtcttc ggtgtggagg gtaaagccca tttcgggaca gcggcactcg ggcgggatgt
     8341 cggacaggca gtatgccccc gtcagcggcg ttttgcggca ggcttccgcc atttcggcaa
     8401 cggcaggcag ccatatttct tcaaatccgt attttttcag cttgtcggca atgagagttt
     8461 cctgtccggc ggctgcttgt ccgaatttga aatcttcaag aatttcgtgc aggcacagcc
     8521 ccgcctgcgt gcctttcgga aaatcgtgta tcgatatgcc gtctgaagcc gtcggcgttt
     8581 cagacggcat cgccggcacc gaggtttcgg cggcatccaa ggacgggcag gcatcttctt
     8641 cgccgccgtc gggcgtttgg gtatggcggc ttaaggcggt aaagctggtg tggcggacaa
     8701 atcggaatct gcgttcggga atgctgtttg cggcaaattc ggcggtttga ccggcgttgc
     8761 cgcgataggc ggcagggggc ggcgcatctt ctgtgaaggc gaaatccgtg ccggccgggg
     8821 cattgtccgt caaacgccgc cagttgcgtt tgagcatcgc gatgccgtct ttttcccagt
     8881 cataggtttg gcggacggtt tcgcggctgt cttgcggcaa gccttcaatc aggtaggcga
     8941 gggggttgtc ggcggtatcg gaagaatagg cggcgtagat gttgagctgt tcctcggcac
     9001 gcgtcagcgc gacataaagc aggcgcaggc gttccgccat ttcctcatcg gcgtattgct
     9061 tctgttcgtc ttccgacagt tgcgcctttg ccaacagttc ggttcgattt gcgctttggt
     9121 ggaggatttg ccagtcggac ggcccggtat cttgcgcgtc ccacgcaaac gggcagtaca
     9181 ccagcggata ctgcaaacct ttcgaggcgt gcatggtaac gattttgacc aaatcttcgt
     9241 cgctttccag acggatggcg cggttgtcgc cgctgttgtt gccggccagg ctgatttggt
     9301 cgcgcaacca tttgtgcagc gcggcggggt tgcggttttg cgcgtcttcg gcggcaagca
     9361 gttcgagcag ttggaaataa ttggtcaggc tgcgcccgtt gttccggctt aagaggcgcg
     9421 tttcgatgcc gtgtgtttgg gaaaattgct gcatggcggc gaaaatgccg tattgattcc
     9481 agttgtcgag cgcggttcgg gcagattccg cccaatgcaa aatctcgctt tcgttttggt
     9541 tgaagtcgtg caattgctgc gcgtcataac cgaatatgcc gcttgtcagg acaaagcgca
     9601 gcgttccggc gcggcgcggt tcgagccaga agccgatgag tgcggaaagg gcggcggctt
     9661 cgggcgaggc gaacacggat tcgcgcgaaa gcaggacgct ttgcacctgc cgttttttca
     9721 gggcagcgga aaccatcacc gcctcgttgt gcgtgcgtac cagcacggca atatcgcccg
     9781 actgcaacgg gcagcctttg aaattcagac ggcattcggc ggcttcgttg agcgcgtggg
     9841 cgatttcgtc ggcgcaatag tcggcggcac ggcggcgcaa aacgtctttg ttggcttttt
     9901 cattgtcgtt ttcgtgcagc caacgaacct gtacggcagg acgttcgggg gacaacctgc
     9961 tttcggcacg cgccgcaccg acttccgaat agccgatgtt ttccaaaacg aacgggcgtt
    10021 ctttgaggcg gaacagcgcg cctatgctgc cgataagcgc ggcgtggctg cggtagttgg
    10081 tggcgagcgt gtagcggtgc cgcgcgtctt ccgccgcctg aaggtaggcg taaatgtccg
    10141 ctccgcgaaa gctgtaaatc gcctgtttgg gatcgccgac gaggaacagc ggtcggtttt
    10201 gggcgatgaa gattttttgg aagatttcgt attgcagcgg gtcggtgtct tggaactcgt
    10261 cgatcagcgc ggtttcccag ttttcggcaa cggcgcgggc gagggtttcg gcgtgcggat
    10321 tgtcggtcag cgcggtgtgg acatcgagca gcaggtcgtc gaaaccgcgt tcgcggcgcg
    10381 attttttcat ctcggcaagg ctgcggttga ggtatccgat taaatccagt tgcagccgga
    10441 ttattgttgc ttcttccgct tcttcgagtg cgtccaaatc acgcctgaag tctgccagtt
    10501 tctgcaattc ggcaaatact gccgcatcgg gcgttttgcc ttttttcagt ccggcttcga
    10561 gtttgtcgga cgcaagtttc aagagccgtt cgtgcagctt tgcctccaaa aagggcaaat
    10621 ccggcgacag ggctttttgt tccaatgcgt caaacagttc ggcaaaactg tttttccgat
    10681 atgaattgcc gtttaaaagg ggatggatgc gccaaaaagt ttcttttaat tcagccagat
    10741 ttccgcaaat gttttgccag cttgccaaag cggcatcccg ggcttgcggc aaatcggttt
    10801 gcggacggcg gaaattcagg tacgggcggg acaggtaggc gcggatttgg gcaaggacgg
    10861 tttgcggcac agctttgcgt ttaaacgcca atgcggcaag caccggatca ttgctgacgc
    10921 gttcccgcca aaaatcttgc gccgggacaa gcaggcggtc gccgtcttct tcggtcagtt
    10981 cgacatcgaa cggtgcttgg cacaaaaacg cgtagtcgcg caggatgcgc tggcagaagc
    11041 cgtggatggt atagatggcg gcgttgtcga attgcccgat ggcggctttg aggcggacaa
    11101 tcagacgcgt ccggccctct ttttgcaaag cctgttttaa gagtgcgggc aggaaggtgt
    11161 cgcctttgtg gtgttcggcg cagtaggcgg cgatgccgtc tgaaagcgtg tcgtctccaa
    11221 gtttggcaat ttctttactt tctaaaacct gcaacacatc gtccaaacgt gcgcgcaggc
    11281 gtgttttcaa ctcggcggtg gcggctttgg tgaaggtaac gaccaatacg cgctcgacgt
    11341 ttttttgttc caatacgatc aggcgcgtaa acagggcggc aatgccgtag gtttttccgg
    11401 tgccggcaga ggcctcaatc aggttggtgc cggcaatggg gacggtcagc gggtcaaatg
    11461 cttggatggg tgcagacata gtgcgcgctc ggaaaacggt tggacggtat agtggattaa
    11521 caaaaatcag gat
//
LOCUS       DAXIFD010000055        11370 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.055, whole genome shotgun sequence.
ACCESSION   DAXIFD010000055 DAXIFD010000000
VERSION     DAXIFD010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11370
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.055"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            67..401
                     /locus_tag="ACFOCN_001005"
                     /pseudo
     CDS             67..401
                     /locus_tag="ACFOCN_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003700725.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(422..1648)
                     /locus_tag="ACFOCN_001006"
     CDS             complement(422..1648)
                     /locus_tag="ACFOCN_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HFC6970169.1"
                     /translation="MTFLQRLQGLADNKICAFAWFVVRRFDEERVPQAAASMTFTTLL
                     ALVPVLTVMVAVASIFPVFDRWSDSFVSFVNQTIVPQGADMVFDYINAFREQANRLTA
                     IGSVMLVVTSLMLIRTIDNTFNRIWRVNSQRPWMMQFLVYWALLTFGPLSLGVGISFM
                     VGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPARQAFVGALATA
                     FCLETARSLFTWYMGNFDGYRSIYGAFAAVPFFLLWLNLLWTLVLGGAVLTSSLSYWR
                     GEAFRRGFDSRGRFDDVLKILLLLDAAQKEGKALPVQEFRRHINMGYDELGELLEKLA
                     RHGYIYSGRQGWVLKTGADSIELNELFKLFVYRPLPVERDHVNQAVDAVMTPCLQTLN
                     MTLAEFDAQAKKQQQS"
     gene            complement(1663..2088)
                     /locus_tag="ACFOCN_001007"
     CDS             complement(1663..2088)
                     /locus_tag="ACFOCN_001007"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970170.1"
                     /translation="MPSEHAAYADLMASSAKRLLCAKAILFSSAVRTGAAVGNIFFDG
                     FADGGDFGDGAQYGFATFNAVDAASDSAGGIAGATVLEIVEDEDFEGDLGSWADSVKM
                     VRSSDGITVVPMPSETAAVQAFVPDGKIGYNIGHQCPTY"
     gene            2193..2852
                     /gene="queC"
                     /locus_tag="ACFOCN_001008"
     CDS             2193..2852
                     /gene="queC"
                     /locus_tag="ACFOCN_001008"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HFC6970171.1"
                     /translation="MSNQKALVIFSGGQDSTTCLIQAIQIYGRENVQAITFQYGQRHA
                     VELERARWIAQDLGVKQTVLDLSLMRQITHNALMDDTAAIETAENGVPNTFVDGRNAL
                     FLLYAAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPL
                     MYLTKAQTWALADEMGVLDYIREQTHTCYNGIVGGCRECPSCILRERGLAEYLESKKA
                     V"
     gene            2880..3395
                     /locus_tag="ACFOCN_001009"
     CDS             2880..3395
                     /locus_tag="ACFOCN_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1543 domain-containing protein"
                     /protein_id="HFC6970172.1"
                     /translation="MPKLHMFYLGGNAGRSNIEVHDIQFAVCDDYREAVPALKAAWFG
                     DADKIHIDGWQVVEWADGYDIAVSETPKTEMPSEHAPRLYFANVGGYRAGQLAEAHAF
                     GLFAAATPAEAKQKALQTLLTDHVQQHKDNLKDVDNLLALDRIGNFHIRLTPNPHGKP
                     AEIGFQGYLPI"
     gene            3402..3824
                     /gene="queD"
                     /locus_tag="ACFOCN_001010"
     CDS             3402..3824
                     /gene="queD"
                     /locus_tag="ACFOCN_001010"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HFC6970173.1"
                     /translation="MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDGIIKGG
                     AKDGMVMDFTDLKAIVKQHITDPFDHAFIYHGGNSRESQIAALLEGWNMKTLRLPCRT
                     TAENMAVEMYDRLKNAGLNVCRVKLWETPTSCAEYEGE"
     gene            4093..4464
                     /locus_tag="ACFOCN_001011"
     CDS             4093..4464
                     /locus_tag="ACFOCN_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HFC6970174.1"
                     /translation="MKLLSTLLVLLVTAEHFYIAWLEMTQIPSEKAAEIFKLPYEFME
                     QKRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGATVLFLGFVLIAAAWGAFSSGN
                     KGILVKQGLPAFLAAAAVLAV"
     gene            4461..5099
                     /locus_tag="ACFOCN_001012"
     CDS             4461..5099
                     /locus_tag="ACFOCN_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HFC6970175.1"
                     /translation="MKKINVAPENPQYRIVEIFESLQGEGWNTGIPAVFVRLGKCNLA
                     CGWCDTDYLTFGMMSLSDILGCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFL
                     CIETNGLNPAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVLAFCENMERK
                     IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDASVHWQLSVQTHKWAGIE"
     gene            complement(5435..5511)
                     /locus_tag="ACFOCN_001013"
     tRNA            complement(5435..5511)
                     /locus_tag="ACFOCN_001013"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5475..5477),aa:Pro,seq:cgg)
     gene            complement(5739..6824)
                     /gene="nagZ"
                     /locus_tag="ACFOCN_001014"
     CDS             complement(5739..6824)
                     /gene="nagZ"
                     /locus_tag="ACFOCN_001014"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HFC6970176.1"
                     /translation="MTVPHIPRGPVMADIAAFRLTEEEKQRLLDPAVGGIILFRRNFQ
                     NIEQLKTLTAEIKALRTPELIIAVDHEGGRVQRFIEGFTRLPAMSTLGEIWDKDGASA
                     AETAAGQVGRVLATELSACGIDLSFTPVLDLDWGNCPVIGNRSFHHNPEAVAHLALAL
                     QKGLAKGGMKSCGKHFPGHGFVEGDSHLVLPEDRRSLSELEAADLAPFHIMSREGMAA
                     VMPAHVVYPQVDTKPAGFSEIWLKQILRRDIGFKGVIFSDDLTMEGACGVGGLKERAR
                     ISFEAGCDIVLVCNRPDLVDELREDFRIPDNPALAQRWQYMANTLGSAAAQAVMQTAD
                     FQEAQAFVAGLASPQDTAGGVKVGEAF"
     gene            complement(6881..8401)
                     /locus_tag="ACFOCN_001015"
     CDS             complement(6881..8401)
                     /locus_tag="ACFOCN_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HFC6970177.1"
                     /translation="MQLIDYSHSFFSVVPPFLALALAIITRRVLLSLGIGILVGVAFL
                     VGGNPVDGLTHLKDMVVGLAWSDGDWSLGKPKILVFLILLGIFTSLLTYSGSNQAFAD
                     WAKRHIKNRRGAKMLTACLVFVTFIDDYFHSLAVGAIARPVTDKFKVSRAKLAYILDS
                     TAAPMCVLMPVSSWGASIIATLAGLLVTYKITEYTPMGTFVAMSLMNYYALFALIMVF
                     VVAWFSFDIGSMARFEQAALNEAHDETAVSDGSRGRVYALIIPVLALIASTVSAMIYT
                     GAQASETFSILGAFENTDVNTSLVFGGTCGVLAVVLCTLGTIKTADYPKAVWQGAKSM
                     FGAIAILILAWLISTVVGEMHTGDYLSTLVAGNIHPGFLPVILFLLASVMAFATGTSW
                     GTFGIMLPIAAAMAVKVDPSLIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHI
                     DHVTSQLPYALTVAAAAASGYLALGLTKSALLGFGTTGIVLAVLIFLLKDKKRANA"
     gene            complement(8601..10100)
                     /locus_tag="ACFOCN_001016"
     CDS             complement(8601..10100)
                     /locus_tag="ACFOCN_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HFC6970178.1"
                     /translation="MFKKYQYLALAALCAASLAGCDKAGSFFGADKKEASFVERIEHT
                     KDDGSVSMLLPDFVQLVQSEGPAVVNIQAAPAPRTQNGSSNAETDSDPLADSDPFYEF
                     FKRLVPNMPEIPQEEADDGGLNFGSGFIISKDGYILTNTHVVTGMGSIKVLLNDKREY
                     TAKLIGSDVQSDVALLKIDATEELPVVKIGNPKDLKPGEWVAAIGAPFGFDNSVTAGI
                     VSAKGRSLPNESYTPFIQTDVAINPGNSGGPLFNLKGQVVGINSQIYSRSGGFMGISF
                     AIPIDVAMNVAEQLKNTGKVQRGQLGVIIQEVSYGLAQSFGLDKAGGALIAKILPGSP
                     AERAGLQAGDIVLSLDGGEIRSSGDLPVMVGAITPGKEVSLGVWRKGEEITIKVKLGN
                     AAEHIGASSKTDEAPYTEQQSGTFSVESAGITLQTHTDSSGGHLVVVRVSDAAERAGL
                     RRGDEILAVGQVPVNDEAGFRKAMDKAGKNVPLLIMRRGNTLFIALNLQ"
     gene            complement(10238..10867)
                     /gene="nth"
                     /locus_tag="ACFOCN_001017"
     CDS             complement(10238..10867)
                     /gene="nth"
                     /locus_tag="ACFOCN_001017"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HFC6970179.1"
                     /translation="MNRHIRQEIFERFRAANPHPTTELNFNSPFELLIAVLLSAQATD
                     VGVNKATAKLFPVADTPQAMLDLGLDGVMEYTKTIGLYKTKSKHIMQTCRILLEKYNG
                     EVPEDREALESLPGVGRKTANVVLNTAFGHPVMAVDTHIFRVSNRTKIAPGKDVREVE
                     DKLMRFIPKEFLMDAHHWLILHGRYTCKALKPQCQTCIINDLCEYPAKA"
     gene            complement(10913..11326)
                     /locus_tag="ACFOCN_001018"
     CDS             complement(10913..11326)
                     /locus_tag="ACFOCN_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HFC6970180.1"
                     /translation="MMPAYAYAALAFSAFTSATLLPGTSEAAFALFVRRFPEHAYGAL
                     LCAGLANGLGSMVSYWMGRLLPSRKMPSEKTLNLMRRFGIWLLPFAWLPVVGDALPLA
                     AGWLRLNPWTSGLMLVIGKTARYAFILWGMQYYAA"
BASE COUNT         2673 a         3044 c         3164 g         2489 t
ORIGIN      
        1 tctcaacagc ttaaaatcct gcgggattgg tgtgggattt agggctaatc tagtacagcc
       61 ccttgttttt tcgatacgga accggataga ggaaaaatcg aacattgcgc ctgccttgct
      121 atgattcacg aagaaatctg cgccatgcct atgggctatg aaaccttgat cggcgatatg
      181 gcagcgcact gtcaggcgga caaaaacaac gcatcgtatt ggcgcgggcc ttatattgcg
      241 aaccgaaaat cctattttta gatgcagcga ccagccattt ggatattgcc aatgaaaaag
      301 cagtcaatgc aaacttgaat ggcttgtcta tcataaaaat tatggcggca cacagaaagg
      361 aaacggtgga atcagcagat aggaaaatgt ctttaggata aaaatacagt ttcaaaaata
      421 ctcaagattg ctgctgtttt ttcgcctgag cgtcaaactc cgccagcgtc atgttcaaag
      481 tctgcaaaca cggtgtcatt accgcatcga cagcttggtt cacatgatcc ctttccacag
      541 gcaacggacg gtaaacgaag agcttgaaga gttcgttcaa ctcaatcgaa tccgcccccg
      601 ttttcaacac ccaaccctgt ctgccggaat agatgtagcc gtgccgcgcc agcttttcca
      661 aaagctcgcc caactcgtcg tagcccatat tgatatgccg tctgaactcc tgaacaggca
      721 aggctttgcc ttctttttgc gccgcatcca gaagcagcag gattttcaac acgtcgtcga
      781 accgtccgcg cgagtcgaag cccctgcgga acgcttctcc ccgccagtag gagagtgaag
      841 aagtcagcac cgcgccgccc aagaccagcg tccacaacag gttcagccac aacagaaaaa
      901 acggcacggc ggcaaacgcg ccgtaaatcg agcggtagcc gtcgaagttg cccatatacc
      961 aagtgaagag ggaacgtgcg gtttccagac agaacgctgt tgccaaagcc ccgacaaacg
     1021 cctgccgcgc gggaacgaag cggtttggca cgaagcggta cagcccccac agcaaaagcg
     1081 tcatgaaggt cagcgtcgcc gccgttcgca acgcgcccga ccactgcggc gcacctgagg
     1141 caagcgcggc atcctgtacc gagccgacca taaaggaaat gcccacgccc aaagacagcg
     1201 gcccgaacgt cagtaaagcc caatagacga gaaactgcat catccacgga cgctgggaat
     1261 tgacccgcca gatgcggttg aacgtattgt ctatcgtccg aatcagcatc agcgaggtaa
     1321 cgaccagcat cacgctgccg attgccgtca gccggttcgc ctgctcgcgg aacgcattga
     1381 tatagtcgaa caccatgtcc gcgccctgcg gcacaatggt ttggttgacg aaggagacga
     1441 acgaatccga ccagcggtcg aacacgggga aaatcgaagc gaccgccacc atcacggtca
     1501 gcacggggac gagtgccagc agcgtcgtaa acgtcatgct tgccgccgcc tgcggtacgc
     1561 gttcttcatc aaagcggcgg acgacgaacc atgcaaacgc acagatttta ttgtctgcca
     1621 aaccttgcaa acgttgtaaa aaggtcataa tttcttgccc ggtcagtaag ttgggcattg
     1681 atgcccgatg ttatagccaa ttttgccgtc aggaacaaat gcctgaactg cggctgtttc
     1741 agacggcatc ggaacaactg ttatgccgtc tgaagaccga accattttaa cggaatccgc
     1801 ccatgaaccc aaatccccct caaaatcctc gtcctctact atttccaaaa cggtagcacc
     1861 cgcaatcccg cccgccgaat cgctcgcggc atcgacagcg ttgaaggttg cgaagccgta
     1921 ttgcgcaccg tccccaaagt ctccgccgtc tgcgaagccg tcaaaaaaga tattcccgac
     1981 agcggctccc gtcctgaccg ccgaagaaaa caatatcgcc ttcgcacaaa gcaaacgctt
     2041 ggcggaactc gccatcaagt cggcataagc cgcgtgttca gacggcatgg cgttcagatg
     2101 ccgtctgaac gcgtttgcct gtataatccg cgtctttact gtccaacttc gcggttcgca
     2161 aacctcccgc gttaccaaaa ctaggattcg atatgtcaaa ccaaaaagcc ttggtcatct
     2221 tttcgggcgg tcaggattcg accacctgcc tgattcaggc aatccaaatc tacgggcgcg
     2281 aaaacgtcca agccattact ttccaatacg ggcaacgcca tgccgtcgag ctggaacgtg
     2341 cccgctggat tgcgcaggat ttgggcgtca aacaaaccgt actcgacttg agcctgatgc
     2401 ggcagattac gcacaatgcc ctgatggacg acaccgccgc catcgaaact gccgaaaacg
     2461 gcgttccgaa tacctttgta gacggccgca acgcgctttt cctgctctat gccgcgattt
     2521 acgccaaagg gcaggggata cggcacatca tcgcgggcgt gtgcgaaacc gacttctccg
     2581 gctatcctga ctgccgcgac gtgttcgtca aatccatgaa cgttaccctt aatttggcga
     2641 tggactatga tttccaaatc cacacgccgc tgatgtatct gaccaaggcg caaacgtggg
     2701 cgttggcgga cgaaatgggc gtgctggact atatccgcga gcaaacccac acctgctata
     2761 acggcatcgt cggcggctgc cgcgaatgcc cgagctgtat cttgcgcgaa cgcgggctgg
     2821 cggaatatct ggaaagtaaa aaggccgtct gaacacgcgc aaaccataag gaatacgata
     2881 tgcccaagct ccatatgttt tacctcggcg gcaatgccgg caggtcgaat atcgaagtgc
     2941 acgacatcca atttgccgtg tgcgacgact accgtgaagc cgtccccgca ctcaaagccg
     3001 cgtggttcgg cgatgcggac aaaatccaca tcgacggctg gcaggttgtc gaatgggcgg
     3061 acggttacga catcgccgta tccgaaacgc ccaaaacgga aatgccgtct gaacacgccc
     3121 cgcgcctgta ttttgccaat gtcggcggtt atcgcgcggg gcagcttgcc gaggcgcacg
     3181 cgttcgggct gttcgccgcc gccacgcctg ccgaagccaa acaaaaagcc ctgcaaaccc
     3241 tgttgaccga ccatgttcag caacataaag acaacttaaa agacgtggac aacctgcttg
     3301 cgctcgaccg catcggcaat ttccatatcc gcctgacccc gaatccgcac ggcaaacccg
     3361 ccgaaatcgg ctttcaaggc tatttgccca tttgagaacc catgaaaatc accaaaatct
     3421 tcaccttcga ctcctcgcat atgctcgacg ggcatgacgg caaatgccaa aacttgcacg
     3481 gacataccta caaactcgaa atcaccgttt cagacggcat tatcaaaggc ggcgcgaaag
     3541 acggtatggt gatggacttt accgacttga aagccattgt caaacaacac attaccgacc
     3601 ccttcgacca cgccttcatc taccacggcg gcaacagccg cgaatctcaa atcgccgcac
     3661 tcttggaagg ctggaacatg aaaaccctgc gcctgccctg ccgcaccact gccgaaaata
     3721 tggcggtcga aatgtacgac cgtctgaaaa acgcggggct gaacgtgtgc cgcgtcaaat
     3781 tgtgggaaac gccgacatcg tgtgcggagt atgaagggga gtagggaata tcttgaacgt
     3841 atcgatatag taaattccaa taagacatgc ccaaccgcgt cattcccgcg caggcgggaa
     3901 tccagacctt ggtttttcag gaatatttaa aaattgcagc aattccaaat ctttggattc
     3961 ccgcctgcgc ggaaaggacg gtttagagcg tccttatttg aatttaccgt aaaacggttt
     4021 tttctcctgt acggattccc cgttttttca gacgaccctc catatcaaat acacccatta
     4081 aaaggaatac ccatgaaact tctctccacc ctcttagtcc tccttgtcac cgccgaacat
     4141 ttctacatcg cctggcttga aatgacgcag attcccagcg aaaaagcggc ggaaatattc
     4201 aagctgcctt atgaatttat ggaacaaaag cgcgtgcaga ccctgttcgg caaccaaggg
     4261 ctgtataacg gctttctcgg catcgggctg gtgtggtcgc ggtttgccgc tccggataac
     4321 gcggtgtacg gcgcaacggt actgtttctc ggcttcgtcc tgattgccgc cgcgtggggc
     4381 gcgttctctt ccggcaacaa aggcatactc gtcaaacaag gtttgcccgc atttttggca
     4441 gcggcggcgg tgttggcggt atgaaaaaaa tcaatgttgc ccccgaaaat ccccaatacc
     4501 gcatcgtcga aatctttgaa agcctgcaag gcgaaggctg gaacacgggc atacccgccg
     4561 ttttcgtccg cttgggcaaa tgcaacctcg cctgcggctg gtgtgatacc gattatttga
     4621 cattcggcat gatgagcctg tccgacatct taggctgtct gaaaacctat gccgcccgca
     4681 acatcatcat caccggcggc gaaccgacca tccagccgca tctcgatatg ctgctggaca
     4741 tgctcaaggc ggaaggttat ttcctctgta tcgaaaccaa cggactcaat cccgcgccgc
     4801 cgcaaatcga ctatgtcgcc accagcccca aagcctgcta tgccgccaaa tacgaaaaaa
     4861 gctgtatcga aacagccgac gaagtgcgga ttgttgccga cggcgatgtc cttgcgttct
     4921 gtgaaaatat ggaacgcaaa atccgcgcgc atcattacta cctttcgccc tgtgagcaag
     4981 acggtgcgat gaacatctac gacaccatcc gccaaatcgg tattttaaac agtcgccccg
     5041 acgcatccgt gcattggcag ttgagcgtgc agacgcacaa atgggcggga atagagtagt
     5101 ttaagcagtg taactcaaag ggacggcgta cggttttacc gatgtttgac atacggggaa
     5161 agtgtgccgc ttctgcgtgg aaatgccggc atttccaccg cccaatcagg acggagcctt
     5221 actgaataag atgctgccgt tgggtacaag ctcggcttcc taaattccga tggtcttttg
     5281 aaccttgccg atactctgtg ccagtgcgcg caaatggcag ggttagggaa aacgaaatgc
     5341 cgtctgaaac agcattctgt ttcagacggc atttttctgt tgacgccaaa agggaaaaac
     5401 cgccccagca atccatgccg aggcggtttg aatatggtcg gaatgagagg attcgaacct
     5461 ccgacccctt cgtcccgaac gaagtgcgct accgggctgc gctacattcc gaattaagta
     5521 aggcgtgatt atagcgcaaa aaatacggcg tgcctatacc gttttgcctt tttgccgcgt
     5581 gtcgggcgga tttaaaggag tgtgtttgaa tacagtgttg ataatcatca ttatctttaa
     5641 gtaattcaat aagataactt tctacctgac cgaaaaaatc attgcctttc cctgacaaac
     5701 ggttgatgaa atcggcagat tgttgaaacg cagccggttt aaaaggcttc gccgactttt
     5761 acgccgcccg ctgtatcctg cggcgaggca aggccggcaa caaaggcttg cgcctcttgg
     5821 aaatccgccg tctgcataac ggcttgcgcg gcggcactgc cgagcgtgtt ggccatatat
     5881 tgccaacgtt gcgccaaagc gggattgtca ggaatgcgga aatcttcgcg cagttcgtcc
     5941 acaaggtcgg gacggttgca gacgaggacg atgtcgcaac ctgcctcaaa ggaaatgcgg
     6001 gcgcgttctt tgaggccgcc gacaccgcac gcgccctcca tagtcaaatc gtccgagaaa
     6061 atcacgcctt tgaatccgat atcgcggcgc aaaatttgtt tgagccagat ttcggaaaac
     6121 cctgcgggct ttgtgtccac ttgtggataa acgacgtggg cgggcataac cgccgccata
     6181 ccttcgcggc tcataatgtg gaagggggcg aggtcggcgg cttcgagttc ggacaggctg
     6241 cgcctgtctt ccggcaagac cagatggctg tctccttcga caaatccgtg tccgggaaaa
     6301 tgtttgccgc aggatttcat accgcctttt gccaaacctt tttgaagggc gagggcgagg
     6361 tgggcgaccg cttcgggatt gtggtggaaa ctgcggttgc cgatgacggg gcagtttccc
     6421 cagtccaaat ctaagacggg cgtgaaggac aaatcgatgc cgcaggcgga aagctcggtt
     6481 gccaaaaccc ggccgacttg tccggcggcg gtttcggcgg cggacgcgcc gtctttgtcc
     6541 caaatctcgc cgagcgtact cattgcgggc aggcgggtga agccttcgat gaaacgttgc
     6601 accctgccgc cttcgtgatc gacggcgata atgagttcgg gtgtgcgcag ggctttgatt
     6661 tcggcggtga gtgttttgag ttgttcgatg ttttggaagt tgcggcggaa gaggatgatg
     6721 ccgcctacgg cgggatcgag caggcgttgc ttttcctctt cggtcaggcg gaaggcggca
     6781 atgtctgcca tgacggggcc gcgcggaata tgggggacgg tcattgcggt ttgctccaaa
     6841 aagcttcaga cggcatatgc cgtctgaaca gggaaagggg tcaggcgttg gcgcgttttt
     6901 tatctttcaa cagaaaaatc agcaccgcca atacaatgcc tgtcgtgcca aagcccaaca
     6961 gcgcggattt tgtcagaccc aatgcgaggt agcccgatgc ggcggcggcg gcaacggtta
     7021 aggcgtaagg cagttgcgag gtaacgtggt cgatgtggtt gcagcgcgcg cctgtggacg
     7081 acaggatggt cgtgtcggag atgggcgaac agtggtcgcc gcataccgcc cccgccatta
     7141 ctgcggacat acacgggata atcagtgagg gatcgacttt gaccgccatg gcggcggcaa
     7201 tcggcagcat aatgccgaac gtcccccagc ttgtgcctgt ggcaaacgcc atcacgctgg
     7261 cgagcaggaa gaggatgacg ggcaggaagc cgggatggat gttgcccgca accagtgtgg
     7321 agaggtaatc gccggtgtgc atttcgccga caaccgtact gatgagccaa gcgaggatta
     7381 aaatggcgat tgcgccgaac atagatttcg caccctgcca aacggctttg ggatagtcgg
     7441 cggttttaat cgtgccgagc gtgcagagaa cgacggcaag gacgccgcaa gtgccgccga
     7501 ataccagcga agtgtttacg tccgtgtttt caaatgcccc caaaatgctg aaggtttcgc
     7561 ttgcctgcgc gccggtgtag atcatggcgg aaaccgttga ggcgattaag gccaaaacgg
     7621 gaataatcaa tgcgtaaacc ctgccccggc tgccgtctga aacggcagtt tcatcgtggg
     7681 cttcgttcaa cgcggcttgt tcgaaacgcg ccatcgagcc gatgtcgaag gaaaaccatg
     7741 cgacgacgaa caccataatc agggcaaaca gcgcgtaata gttcatcagg ctcatggcga
     7801 caaacgtccc catcggcgtg tattcggtga ttttgtaggt aacgagcaat ccggcaagcg
     7861 tggcgataat cgacgcgccc caacttgaaa caggcatcag cacgcacata ggcgcggcag
     7921 tggagtcgag gatgtaggcg agtttggcgc gggaaacttt aaacttgtcg gtaacggggc
     7981 gggcaatcgc accgacggcg aggctgtgga aatagtcgtc gataaaggtt acgaacacga
     8041 ggcaggcggt cagcattttc gcgccgcgcc ggtttttaat gtgccgtttt gcccagtcgg
     8101 caaacgcctg attgctgccg gagtaggtca gcagggaagt aaaaataccc aaaagtatca
     8161 ggaaaaccag gatttttggt ttgcccagcg accaatcgcc gtctgaccaa gccaagccga
     8221 cgaccatgtc tttcaggtgt gtcagaccgt cgacggggtt gccgccgacc aaaaaggcaa
     8281 cgccgaccag aataccgatg cctaaagaca gcagtacgcg gcgggtaatg atggcaagtg
     8341 ccagtgccaa aaagggtggc acaaccgaga aaaatgaatg tgaatagtcg atcagctgca
     8401 tggttatggg ggtgttaagc gtccggatgg ggcggtttct gtccgcaacg gttcggattt
     8461 tgttggcaaa atgggcgaaa gtattttctg ttccggaaaa tacttatttg aaatcaatta
     8521 actgattttt taaaatgccc gttaatcggt attgacgggc attttatcat ttaaaaaata
     8581 ttttggttaa attatgtgtg ttattgcagg tttaatgcga taaacagcgt gttgccacgg
     8641 cgcatgatca gcagggggac gtttttgcct gccttgtcca tagctttgcg gaaaccggct
     8701 tcgtcattga cggggacttg cccgacggca agaatttcgt cgccgcgcct caagcctgcg
     8761 cgttctgccg cgtcggaaac ccgtacgacg acgaggtgtc cgccgctgct gtcggtatgt
     8821 gtctgaaggg taatgcctgc ggattcgacc gagaacgtac cggattgctg ttcggtgtag
     8881 ggggcttcat ctgttttgga tgatgcgccg atatgctcgg cggcgttgcc cagcttgact
     8941 ttgattgtga tttcttcgcc tttgcgccat acgccgaggc tgacttcttt tcccggcgta
     9001 atggcgccga ccataacggg aaggtcgccg gaagaacgta tttctccgcc gtcgaggctg
     9061 aggacgatgt cgcccgcctg caggccggca cgttctgcgg ggctgccggg caggattttg
     9121 gcaatcagtg cgccgccggc tttgtccaaa ccgaacgatt gtgccaaacc gtaggatact
     9181 tcttgaataa tcacgcccag ttgtccgcgt tggactttgc cggtgttttt cagctgttcg
     9241 gcgacattca tggcaacgtc aatcgggatg gcgaaggaaa tgcccatgaa tccgccgctg
     9301 cggctgtata tttgcgagtt gatgccgacg acctgtcctt ttaagttgaa cagcgggccg
     9361 ccggagttgc ccggattgat ggcaacgtcg gtttggatga aaggtgtgta gctttcgttg
     9421 ggcaggcttc tgcctttggc ggacacgatg ccggcggtca cgctgttgtc gaagccgaag
     9481 ggcgcgccga tggcagcgac ccattcgcct ggtttcaaat ctttgggatt gccgattttg
     9541 acgacgggca gctcttccgt tgcgtcgatt ttcagaaggg cgacatcgga ttggacatcc
     9601 gaaccgatga gtttggcggt atattcgcgc ttgtcgttga gcaggacttt gatactgccc
     9661 atgccggtaa cgacgtgcgt attggtcaga atatagccgt ctttgctgat gatgaagccc
     9721 gaaccgaagt tcaatccgcc gtcatctgct tcttcttggg ggatttcggg catgttcggg
     9781 acgaggcgtt tgaaaaattc gtagaacggg tcgctgtcgg caagcgggtc ggaatcggtt
     9841 tcggcattgc tgctgccgtt ttgggtgcgc ggggcggggg ctgcctgaat attgacgact
     9901 gccgggcctt cgctttgaac cagttggaca aagtcgggca gcagcatact gacgctgccg
     9961 tcgtctttgg tgtgttcgat gcgttctacg aaagatgctt cttttttgtc cgcaccgaaa
    10021 aagctgccgg ctttgtcgca gcctgccagc gaggcggcac acagtgctgc caaagcgagg
    10081 tattggtatt ttttgaacac gttttgtcct ttgtcggatg ccggtaccgg ctttaatgcc
    10141 gtctgaagcg cattttgtcg gcttcagacg gcataggttg aaattctaca acgtccgtcc
    10201 gaattttcaa gcgtttcatt ttgaagggcg gcggcggtca ggctttggcg ggatattcgc
    10261 acaaatcgtt gatgatgcag gtttggcatt gcggtttgag tgccttgcag gtgtagcgtc
    10321 cgtgcaaaat cagccagtgg tgcgcgtcca tcagaaattc tttaggaatg aagcgcatca
    10381 gtttgtcttc gacttcgcgc acatctttcc cgggggcgat tttggttcgg ttggacacgc
    10441 ggaaaatatg cgtatcgacc gccataacgg ggtgtccgaa cgctgtgttc aataccacgt
    10501 ttgccgtttt gcgccccacg ccaggcaacg attccaaagc ctcgcggtct tccggcactt
    10561 cgccgttgta tttttccagc aggatgcggc aggtttgcat gatgtgcttg gacttggttt
    10621 tatacagccc gatggttttc gtgtattcca tcacgccgtc caaacccaaa tccagcatcg
    10681 cctgcggcgt atcggcaacc ggaaacagct tcgccgtcgc cttgtttacg ccgacatcgg
    10741 tcgcctgcgc cgaaagcaga acggcaatta aaagctcgaa aggggagttg aaattcagct
    10801 cggtggtcgg atgggggttg gcggcgcgga agcgttcgaa aatttcttgg cggatgtgtc
    10861 tgttcatttt tttgtgcagt cggtttgtgc ggtcggcatt ataacgcacg gttcaggcgg
    10921 cgtaatattg cattccccac agaatgaagg cgtaacgcgc cgttttgccg ataaccagca
    10981 tcagcccgct tgtccacgga ttcaaccgca gccagccggc ggcaagcggc agtgcgtcgc
    11041 cgacgacggg cagccaggca aacggaagca gccaaatacc gaaacgccgc atcagattca
    11101 gtgttttttc agacggcatt tttcgggaag gcagcaaacg tcccatccaa taggaaacca
    11161 tactgcccaa tccgttggca aggccggcgc acagcaacgc gccgtatgcg tgttcgggaa
    11221 agcggcggac gaacagggca aaggcggctt cggatgtgcc gggcaggagg gtggcggaag
    11281 tgaaggcgga aaaggcgagc gcggcgtagg cgtaggcggg catcattgca aacagtctca
    11341 aacaggcaaa aatcggcgac ggattgtacg
//
LOCUS       DAXIFD010000056        11157 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.056, whole genome shotgun sequence.
ACCESSION   DAXIFD010000056 DAXIFD010000000
VERSION     DAXIFD010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11157
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.056"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..975)
                     /gene="siaC"
                     /locus_tag="ACFOCN_001019"
     CDS             complement(<1..975)
                     /gene="siaC"
                     /locus_tag="ACFOCN_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysialic acid capsule biosynthesis protein
                     SiaC"
                     /protein_id="HFC6970181.1"
                     /translation="MQNNNEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAA
                     YNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES
                     KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI
                     ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLD
                     NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKD
                     TIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEY"
     gene            complement(976..1662)
                     /gene="neuA"
                     /locus_tag="ACFOCN_001020"
     CDS             complement(976..1662)
                     /gene="neuA"
                     /locus_tag="ACFOCN_001020"
                     /EC_number="2.7.7.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acylneuraminate cytidylyltransferase"
                     /protein_id="HFC6970182.1"
                     /translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKC
                     FDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL
                     LQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSD
                     LEQPRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQ
                     AENILNHKES"
     gene            complement(1666..2799)
                     /gene="neuC"
                     /locus_tag="ACFOCN_001021"
     CDS             complement(1666..2799)
                     /gene="neuC"
                     /locus_tag="ACFOCN_001021"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0006047 - UDP-N-acetylglucosamine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HFC6970183.1"
                     /translation="MKRILCITGTRADFGKLKPLLAYIENHPDLELHLIVTGMHMMKT
                     YGRTCKEVTRENYQHTYLFSNQIQGEPMGAVLGNTITFISRLSDEIEPDMVMIHGDRL
                     EALAGATVGALSSRLVCHIEGGELSGTVDDSIRHSISKLSHIHLVANEQAVTRLVQMG
                     EKRKHIHIIGSPDLDVMASSTLPSLEEVKEYYGLPYENYGISMFHPVTTEAHLMPQYA
                     AQYFKALEVSGQNIISIYPNNDTGTESILQELLKYQSDKFIAFPSIRFEYFLVLLKHA
                     KFMVGNSSAGIREAPLYGVPSIDVGTRQSNRHMGKSIIHTDYETKNIFDAIQQACSLG
                     KFEADDTFNGGDTRTSTERFAEVINNPETWNVSAQKRFIDLNL"
     gene            2934..4109
                     /gene="ctrA"
                     /locus_tag="ACFOCN_001022"
     CDS             2934..4109
                     /gene="ctrA"
                     /locus_tag="ACFOCN_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export outer membrane
                     protein CtrA"
                     /protein_id="HFC6970184.1"
                     /translation="MFKVKFYIRHAVLLLCGSLIVGCSAIPSSGPSAKKIVSLGQQSE
                     VQIPEVELIDVNHTVAQLLYKAQINQSFTQFGDGYASAGTLNIGDVLDIMIWEAPPAV
                     LFGGGLSSMGSGSAHQTKLPEQLVTARGTVSVPFVGDISVVGKTPGQVQEIIKGRLKK
                     MANQPQVMVRLVQNNAANVSVIRAGNSVRMPLTAAGERVLDAVAAVGGSTANVQDTNV
                     QLTRGNVVRTVALEDLVANPRQNILLRRGDVVTMITNPYTFTSMGAVGRTQEIGFSAR
                     GLSLSEAIGRMGGLQDRRSDARGVFVFRYTPLVELPAERQDKWIAQGYGSEAEIPTVY
                     RVNMADAHSLFSMQRFPVKNKDVLYVSNAPLAEVQKFLSFVFSPVTSGANSINNLTN"
     gene            4124..5287
                     /gene="ctrB"
                     /locus_tag="ACFOCN_001023"
     CDS             4124..5287
                     /gene="ctrB"
                     /locus_tag="ACFOCN_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export protein CtrB"
                     /protein_id="HFC6970185.1"
                     /translation="MSEQLPVAVATETKAERKKPKKKSWIKKLSPLFWVTVIIPTVIS
                     LVYFGFFASDRFTSQSSFVVRSPKSQSSLNGLGAILQGTGFARAQDDIYTVGEYMRSR
                     SSLDELRKILPVREFYETKGDAFSRFNGFGFRGEEEAFYQYYKNQVMINFDTVSGIST
                     LNVTSFDALESKKINEALLKQGEALINQLNDRARADTVRYAEEVVKTAAERVKEASQN
                     LTDYRIANGVFDLKAQSEVQMGLVSKLQDELIVIQTQLDQVKAVTPENPQIPGLQARE
                     QSLRKEIDQQLRAISGGGHSSLSNQAAEYQRVYLENQLAEQQLAAAMTSLESAKVEAD
                     RQQLYLEVISQPSLPDLAHEPKRLYNIVATLIIGLMVYGILSLLTASIREHKN"
     gene            5287..6084
                     /locus_tag="ACFOCN_001024"
     CDS             5287..6084
                     /locus_tag="ACFOCN_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6970186.1"
                     /translation="MKALHKTSFWESLAIQRRVIGALLMREIITRYGRNNIGFLWLFV
                     EPLLMTFVIVLMWKFLRADRYSTLNIVAFAITGYPMLMMWRNASKRAVGSISSNASLL
                     YHRNVRVLDTILARMILEIAGATIAQIVIMAVLIAIGWIEMPADMFYMLMAWLLMAFF
                     AIGLGLVICSIAFNFEPFGKIWGTLTFVMMPLSGAFFFVHNLPPKVQEYALMIPMVHG
                     TEMFRAGYFGSDVITYENPWYIVLCNLVLLLFGLAMVSKFSKGVEPQ"
     gene            6081..6731
                     /locus_tag="ACFOCN_001025"
     CDS             6081..6731
                     /locus_tag="ACFOCN_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6970187.1"
                     /translation="MISVEHVSKQYQMRGGMRTVLDDINFSLQKGEKVGILGRNGAGK
                     STLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYV
                     KNFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
                     CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMHQFEDMDKAYEYYNSLP"
     gene            6796..9069
                     /locus_tag="ACFOCN_001026"
     CDS             6796..9069
                     /locus_tag="ACFOCN_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HFC6970188.1"
                     /translation="MNITQILSQELSATTAQINAAIELLDDGATVPFIARYRKEATGG
                     LDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDGLRAQIEAADNKTALEDLYL
                     PYKPKRRTKAQIAREHGLQPLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAI
                     LMEQFAEDAELIGTLRDKLWNEAEIHAQVVGGKETESEKFSDYFDHREPIRAMPSHRA
                     LAVLRGRNEGVLNIALKYQPDDTPITQQSEYEQIIARRFKVSDGHKWLRDTVRLTWRA
                     KIFLSLELEALNRLKEAADTDAITVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCA
                     VVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVR
                     EMSKMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKID
                     PKSIGVGQYQHDVNQSQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQN
                     IVAYRDENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGKEPLDASAVHPEAYPVVA
                     KMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGEFQT
                     ASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRE
                     VVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRND
                     RAPANSAMADAFAKLKR"
     gene            9100..10098
                     /locus_tag="ACFOCN_001027"
     CDS             9100..10098
                     /locus_tag="ACFOCN_001027"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6970189.1"
                     /translation="MHTPLTYIDLFSGAGGLSLGFEQAGFQQLLSVEMESDYCQTYRT
                     NFPHHQLLQKDLTTLTEQDLINCLNGQAVDLIIGGPPCQGFSMAGKIGRTFTDDPRNH
                     LFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILSAADF
                     GVPQIRSRVIFIGRRDKGKISFPEPLQISHQTVGSAIGHFPKLAAGESNPHVANHEAM
                     NHSAQMLEKMAFVKNGGNRNDIPEPLRPKTGDIRKYIRYNSNKPAVCITGDMRKVFHY
                     EQNRALTVRELAALQSFPDNFIFCGSKIAQQQVGNAVPPLLAKAIAESILKMSENE"
     gene            10091..10435
                     /locus_tag="ACFOCN_001028"
     CDS             10091..10435
                     /locus_tag="ACFOCN_001028"
                     /inference="COORDINATES: protein motif:HMM:NF014177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFC6970190.1"
                     /translation="MNKQYPKINYIGNKEKIASWICDQLPSDVDTVADVFSGGCSFAY
                     EAKKRGYRVITNDILAINYQIALALIENNHETLNDDDGAMIFSGSPHAGFMSQRYAEK
                     FYFHDEYQQLDL"
     gene            10514..11134
                     /gene="galE"
                     /locus_tag="ACFOCN_001029"
                     /pseudo
     CDS             10514..11134
                     /gene="galE"
                     /locus_tag="ACFOCN_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
BASE COUNT         2939 a         2378 c         2767 g         3073 t
ORIGIN      
        1 atattcgttg acgctgaagt ctccattgcc tgggcgttta acccataggt tatctccgga
       61 caacagttct ccttttttaa tgtctttatc tgctacgaca gatgcaaagg cgaaatcttt
      121 agttggcttt tctcccgcga taatcgtgtc ttttttgccg ccgcgtgcca attttaaagc
      181 atgagcgcct tgcttgagct ctttaaaagt atccggattc atagagcata caatatccgg
      241 acctgggcga tccatgcggt cagtaaagtg acgctctaaa atcgaaccgc ctaaagctac
      301 tgctcctaag caagcatagt tatctaaggt atggtcagac aggccaatga ttgcgtctgg
      361 aaaggcttca gataaatcgt tcataccacc caatcgaaca tcttcgtaag gggttgggta
      421 gatgttggta cagtgaagca aagcataagg tacccctgct tctcgaataa tttctaccga
      481 ctttttgatg ctttcaatag aattcatgcc ggtagagaga ataataggct taccaaaaga
      541 ggccaccagt ttaattaatg ggtagttatt acattcgcca gagccgattt tatatgctgg
      601 aatatccata cgttgtaatc gtaaagcagc tgcacgagag aaaggagtac tgataaaaat
      661 cataccctta ctctctacgt attcttttaa tttaatctca tcttcttcat tcagggcgca
      721 acgttccata atttcataaa tagagacatc tgcattgcct ggaatgactt gtttggcctc
      781 atcagacatt tcgtcttcaa cgatgtgtgt ttgatgttta acaacttcag cgcctgcatt
      841 ataggcagca tcaaccattt caaaagctgt ttttaaagag ccttcatgat tgatgccgat
      901 ttcacagata atcaatggtt cgtggttgta acctactgaa cgattaccaa ttttaaattc
      961 gttgttgttt tgcatttagc tttccttgtg attaagaatg ttttctgcct gttgtaaatc
     1021 aagctcagta tcaatatcga tagagtcttg atgagacata atataaagtt tggttggggc
     1081 gataaaaaaa caattatttg caattagtga agcagtatca ttaatgtaaa ttgcaccatt
     1141 aggcctaaat gcctgaggta attgttggcg aggctgctcc aaatcgctta gatggcgcat
     1201 gggggcatat tcgccattat tgatttgaag cagggttttt agtggatgat gctccattgg
     1261 gcatgcagag acaacggatc cttttatttt ctcatcaaat agagaaaaag cttcacgaat
     1321 atgagcccct gtgcgtaatg gactggttgg ttgtaatagg gttactgtgc cggaattact
     1381 gccaattgtt tctaaagcat gtattacacc tgaaatagag ctggctgtat cggaggccag
     1441 ctctgcaggg cgtaggacga cttcgacacc gaaattttta gcttcttctg caattaaccc
     1501 gccatcagtc gaaacaatta tgcggtcaaa acactttgat gatatagcag cattaattgt
     1561 atgaccaagt aatgatatgc cattcatttt ccggagattt tttaatggca atcctttgga
     1621 gttttggcgc gcaagtataa ccgcaatatt ttgtttttcc ataatttaaa gattcaaatc
     1681 gataaaacgt ttttgagcag aaacattcca cgtttcagga ttgttgatta cttcagcaaa
     1741 tctttctgtg ctggtgcgag tatctccgcc attaaaggta tcatctgctt caaatttgcc
     1801 taaactgcat gcttgttgaa tcgcatcaaa gatattttta gtttcataat ctgtatgaat
     1861 aatagatttt cccatatggc ggttactttg gcgtgtacca acatcaattg aagggacacc
     1921 gtagagagga gcttctctaa tacctgcact tgagttgccg accataaatt tagcatgttt
     1981 caataagact aaaaagtatt caaatcgaat ggaaggaaat gcaataaatt tatcagattg
     2041 atattttaat aattcttgca gaatactttc agtgccagtg tcattattag ggtagatgct
     2101 aatgatattt tggccactta cttctaatgc tttgaaatat tgggccgcat attgtggcat
     2161 taaatgtgct tctgtagtca cggggtgaaa catagaaata ccataatttt cgtatggtaa
     2221 accgtaatat tctttgactt cttctaagga tgggagggtg gaagaggcca taacatctaa
     2281 atcgggggag ccgatgatgt gaatatgctt tcttttttct cccatttgca ctaggcgagt
     2341 gacagcttgt tcatttgcta ccaagtggat atgagaaagt ttactaatag aatgacgaat
     2401 ggagtcatct actgtaccag atagttcacc accttcgata tggcaaacta aacggctgct
     2461 taatgcacct acagttgcgc ctgctagtgc ttctaaacgg tcgccgtgaa tcatgaccat
     2521 atcaggttca atttcatcag atagacgaga gataaacgta atggtattgc ctaaaacggc
     2581 acccattggt tcaccttgga tttgatttga aaacagatat gtatgttgat agttttctcg
     2641 agttacttcc ttgcaggttc tgccatatgt tttcatcata tgcataccag ttacaatcaa
     2701 atgcaattca aggtctgggt gattttcaat ataggctaat aaaggtttta gcttgccgaa
     2761 gtcggctctg gtacctgtaa tgcaaagaat tcttttcatg attttagaat ctataagtat
     2821 ataagtataa ggaagttgga aagaagaata ctaattatac tctacgtact cataaattta
     2881 tttcgattaa gtgctataat taggccattt ataattatat taggatttgg cttgtgttta
     2941 aagtgaaatt ttatattcgt cacgcagtat tattattgtg tggaagttta attgtaggat
     3001 gctctgcgat tccttcatca ggccccagcg caaaaaaaat tgtctcttta gggcaacaat
     3061 ctgaagttca aattcctgaa gtggagctga ttgatgtgaa tcatacggtt gctcagttat
     3121 tatataaggc tcagataaat cagtcattca ctcagtttgg cgatggttat gcttcggctg
     3181 gtacgctaaa tattggtgat gtattggata ttatgatttg ggaagcgccg ccggcagtat
     3241 tgtttggtgg tggcctttct tcgatgggct cgggtagtgc gcatcaaact aagttgccag
     3301 agcagttggt cacggcacgt ggtacggttt ctgtgccgtt tgttggcgat atttcggtgg
     3361 tcggtaaaac gcctggtcag gttcaggaaa ttattaaagg ccgcctgaaa aaaatggcca
     3421 atcagccaca agtgatggtg cgtttggtgc agaataatgc ggcgaatgtg tcggtgattc
     3481 gtgctgggaa tagtgtgcgt atgccgctga cggcagccgg tgagcgtgtg ttggatgcgg
     3541 tggctgcggt aggtggttca acggcaaatg tgcaggatac gaatgtgcag ctgacacgtg
     3601 gcaatgtagt acgaactgtt gccttggaag atttagttgc aaatccgcga caaaatattt
     3661 tgctgcgtcg cggtgatgtg gttaccatga ttaccaatcc ctataccttt acgtctatgg
     3721 gtgcggtggg gagaacacaa gaaatcggtt tttcagccag aggcttatcg ctttctgaag
     3781 ccattggccg tatgggcggt ttgcaagatc gccgttctga tgcgcgtggt gtgtttgtgt
     3841 tccgctatac gccattggtg gaattgccgg cagaacgtca ggataaatgg attgctcaag
     3901 gttatggcag tgaggcagag attccaacgg tatatcgtgt gaatatggct gatgcgcatt
     3961 cgctattttc tatgcagcgc tttcctgtga agaataaaga tgtattgtat gtgtcgaatg
     4021 cgccgttggc tgaagtgcag aaatttttgt cgtttgtgtt ctcgccggtt accagtggcg
     4081 cgaacagtat taataattta actaattaat gtgagtaagt aagatgtctg agcaacttcc
     4141 tgtggcagtt gccactgaaa ccaaagccga gcgtaaaaag ccgaaaaaga aaagttggat
     4201 taaaaagcta agccctttat tttgggtaac ggtgattatc cctacggtaa tttcgttggt
     4261 gtatttcggc ttcttcgctt ccgatcgttt tacgtcgcaa tcgagctttg tggtgcgctc
     4321 gcctaaaagc caatcttctc tcaatggcct gggtgccatt ttgcagggca caggttttgc
     4381 ccgtgcgcaa gatgatattt acacggttgg ggagtatatg cgttcgcgct cgtctttgga
     4441 tgaactgcgt aaaatcttgc cggtgcgtga gttttatgaa accaaaggtg atgcgttcag
     4501 ccgctttaat gggtttgggt tccgtggcga ggaagaggct ttttatcaat actataaaaa
     4561 tcaggtgatg atcaattttg atacggtttc gggtatttcc acgttgaatg taacttcctt
     4621 tgatgcgctg gaatctaaga aaatcaatga ggctttgtta aaacaaggtg aagcattgat
     4681 taaccagttg aacgatcgtg cacgtgctga tacggtgcgc tatgcggaag aagtagtgaa
     4741 aacggcggca gagcgggtaa aggaagcctc tcagaatctg acggattacc ggattgccaa
     4801 tggcgttttt gatttgaaag cgcaatcgga agtgcaaatg gggttggttt ccaagctgca
     4861 agatgaattg attgtgattc aaacccagct ggatcaggtg aaagcagtca ctccggagaa
     4921 tccgcagatt ccgggtttgc aggcgcgtga gcagagcttg cgtaaagaaa ttgaccaaca
     4981 gttacgtgcc atttcgggcg gtgggcattc ttcgttgtct aatcaggctg ccgaatatca
     5041 gcgtgtgtat ttggaaaacc agttggcaga gcagcagttg gcagccgcca tgacttcttt
     5101 ggaaagtgcc aaggttgaag cagaccgtca gcagctttat ttggaagtga tctcgcaacc
     5161 gagcctgccg gatttggcac atgagcctaa acggttatac aacattgttg ccactctgat
     5221 tatcggcttg atggtttatg gtattttgag cctgttgact gccagcattc gtgagcataa
     5281 aaactgatga aagccttgca taaaacatca ttttgggaat ctttagccat tcaaaggcgc
     5341 gtaatcggtg cgctgttgat gcgggaaatt atcacccgtt acggtcgcaa taatattggc
     5401 tttttatggc tgtttgttga gccgttgctg atgacattcg ttatcgtctt gatgtggaaa
     5461 tttttaaggg cagaccgata ttcaactttg aatattgtcg catttgcgat tactggctat
     5521 ccgatgttga tgatgtggcg taatgcctca aaacgggcag ttgggtcgat ttcttcaaat
     5581 gccagcttgc tttatcaccg caatgtaaga gttttggata ccatcttggc gcgcatgatt
     5641 ttggaaattg ctggtgcaac cattgcgcag attgtgatta tggcggtatt gattgcgatt
     5701 ggctggattg aaatgccggc agatatgttt tatatgctga tggcttggct tttgatggct
     5761 ttttttgcga ttggtttggg tttggtgatt tgttcgattg cctttaattt cgagccgttt
     5821 ggcaagattt ggggcacatt gacttttgtg atgatgccgt tatccggtgc gttctttttt
     5881 gtgcataatt tgccgcccaa ggtacaagaa tatgcattaa tgattccgat ggtgcatggc
     5941 acagaaatgt tccgtgccgg atattttggc agcgatgtaa ttacctatga aaatccttgg
     6001 tatatcgtat tgtgcaatct ggtgttgttg ttgtttggct tggcgatggt cagtaaattc
     6061 agtaaaggag tcgagccgca atgatttcgg ttgaacatgt ttccaagcag tatcaaatgc
     6121 gcggcggtat gcggacggtg ttagacgata tcaatttttc gctgcaaaag ggtgagaaag
     6181 ttggtatttt gggtcgaaac ggtgcaggta aatcgacgtt gatccgtttg attagtggtg
     6241 tcgagccgcc gaccacgggt gaaatcaagc ggacaatgag tatttcttgg cctttggcat
     6301 tctccggtgc gtttcaaggt agtctgaccg gtatggacaa tttgcgtttc atctgccgga
     6361 tttacaatgt cgatatcgat tatgtgaaga actttaccga agagttttcc gagttggggc
     6421 aatatcttta cgagccggtc aagcgttatt cttcaggtat gaaggcgcgt ttggcatttg
     6481 ctttgtcgtt ggcggtagag tttgattgct atttgattga cgaagtgatt gcagttggtg
     6541 actcgcgctt tgccgataaa tgtaagtacg agttgtttga aaagcgcaaa gaccgttcca
     6601 tcatcttggt gtcgcacagc cacagcgcca tgaagcaata ttgcgataat gcgatggtgc
     6661 tggaaaaagg gcatatgcac cagtttgaag atatggacaa agcctacgaa tattataatt
     6721 cgctgcctta aagcgattgt tttttaaatc aggccgtctg aaatttcaga cggcctgtcc
     6781 gttggaattc tattgatgaa cattactcaa attctttccc aagaactttc cgcgactacc
     6841 gcgcaaatca atgccgctat tgagctttta gacgacggcg caaccgtgcc gtttatcgcg
     6901 cgttaccgta aagaagccac cggcgggctg gacgacacgc agctgcgccg gcttgccgag
     6961 cggctgcaat acctgcgcga gttggaagag cgcaaagccg ttgtgttaaa aagcattgaa
     7021 gagcaaggca aactttcaga cggcctccgc gcgcaaatcg aagccgccga caacaaaacc
     7081 gcgctggaag acctgtatct gccctacaag cccaaacgcc gcaccaaggc gcaaattgcg
     7141 cgcgaacacg gtttgcagcc gctggcggac gtgttgcttg ccgagcagtc gcaggacgtg
     7201 gaagccgccg cacaaggcta cctgaacgaa aacgtccccg atgccaaagc cgcgttggac
     7261 ggcgcgcgtg cgattctgat ggagcagttt gccgaagacg cggaactcat cggcacgctg
     7321 cgcgacaagc tgtggaacga agccgaaatc cacgcgcaag ttgttggagg caaagaaacc
     7381 gaaagcgaaa aattcagcga ttattttgac caccgcgaac ctattcgtgc gatgcccagc
     7441 catcgtgcgc tagcggtttt gcgcggacgc aacgaaggcg tgttgaacat cgcgctcaaa
     7501 tatcagcccg acgacacgcc gattacgcag caaagcgaat acgagcaaat catcgcccgc
     7561 cgcttcaaag tttcagacgg ccacaaatgg ctgcgcgaca ccgtgcgcct gacttggcgc
     7621 gcgaaaatct ttttgtcgtt ggaacttgaa gctctcaatc gtttgaaaga agccgccgac
     7681 accgacgcga ttaccgtgtt cgcccgcaat ctcaaagact tgctgcttgc tgcgcccgcc
     7741 ggacggctga ccacgctggg tctcgacccc ggctaccgca acggcgtgaa atgcgccgtg
     7801 gtggacgaca ccggcaagct gctggatacc gtcatcgtct atttgcatca agaaaacaat
     7861 atgttggcaa cgctgtcgcg cctgattaaa cagcacggcg tgaagctcat cgccatcggt
     7921 aacggcaccg ccagccgtga aaccgacaaa atcgcgggcg aactggtgcg tgaaatgtcg
     7981 aaaatggggc tgcataaaat cgtcgtgtcc gaagccggcg cgtcgattta ttccgcgtcc
     8041 gaactggcgg cgcgcgagtt ccccgacttg gacgtttccc tgcgcggcgc ggtgtccatc
     8101 gcccgcaggc tacaagaccc gcttgccgag ttggtcaaaa tcgaccccaa atccatcggc
     8161 gtggggcagt atcagcacga cgtgaaccaa agccagctcg ccaaatcgct ggacgcggtg
     8221 gtcgaagact gcgtgaacgc cgtcggcgtg gacgtgaaca ccgcctccgc cccgctcttg
     8281 gcgcgaattt ccggtttgaa tcaaaccctt gcccaaaaca tcgttgccta ccgcgatgaa
     8341 aacggcgcgt tcgacagccg caaaaaattg ctgaaagtac cgcgtttggg cgaaaaaacc
     8401 ttcgagcagg cggcaggctt tttgcggatt aacggcggta aagagccgtt ggacgcgagc
     8461 gccgtccacc ccgaagccta tcccgtcgtc gccaaaatgc tggcgcaaca aggcattagc
     8521 gccgccgaac tcatcggcaa ccgcgagcgc gtgaagcaaa tcaaagcgtc cgacttcacc
     8581 gacgaacgct tcggcctgcc gaccattttg gacatcctgt ccgaactgga aaaacccggc
     8641 cgtgatccgc gcggcgagtt tcagacggca tcgtttgccg aaggtatcca cgaaatcagc
     8701 gacttgcaag tcggtatgat actcgaaggc gtggtttcca acgtcgccaa cttcggcgcg
     8761 ttcgtggaca tcggcgtcca tcaggacggc ttggtgcaca tctccgccct gtccaacaag
     8821 ttcgtccaag acccgcgcga agtggtgaaa gctggcgacg tggtgaaagt gaaagtgctg
     8881 gaagtcgatg ctgcacgcaa acgcatcgcg ctgaccatgc gcttggatga cgaaccgggc
     8941 ggcgcaaaac ataaaatgcc gtctgaaaac cgcagccgcg aacggacagc cggccgcaaa
     9001 ccccaacgca acgaccgcgc cccagccaat tcggcgatgg cggatgcgtt tgcgaagctg
     9061 aagcggtaaa ataatcgaag agtttatgga ttttgactta tgcacacacc acttacctat
     9121 attgaccttt tctcaggagc aggaggccta tccttgggtt ttgaacaagc cggattccaa
     9181 caattgcttt ctgttgaaat ggagtctgat tattgtcaga cttaccgtac caacttcccc
     9241 catcatcaat tactgcaaaa agatttaacc acactaaccg aacaagattt aatcaattgt
     9301 cttaacggac aagcagttga tttgattatt ggaggaccac cttgtcaagg ttttagtatg
     9361 gcaggaaaga ttggacggac atttacagat gacccacgca accatttatt taaagagttt
     9421 gtccgaatag ttaaaattgt ccaaccatat ttttttgtta tggaaaatgt agcgcgactc
     9481 tatacacaca attcaggtaa aacacgtatt gagattattc aagcatttca gaatatcggt
     9541 tattcggtgg aatgtaagat actgagtgca gccgatttcg gtgttcctca gatacgtagc
     9601 cgagtgatat ttatcgggag gagggataaa ggcaaaattt cctttcccga acctttgcag
     9661 atttcccatc agactgttgg atcagcaata ggacattttc caaaactggc tgctggcgaa
     9721 agcaatccac acgttgcaaa tcatgaagct atgaatcatt cggcacaaat gttagaaaaa
     9781 atggcatttg ttaaaaatgg aggtaaccgt aacgatattc ctgaaccatt acgtccgaaa
     9841 acaggtgata tccgtaaata catccgttac aacagcaaca aaccagccgt ttgtattaca
     9901 ggagatatgc gcaaagtttt tcactatgaa cagaatcggg ctttaaccgt tcgtgaatta
     9961 gctgccttac aatctttccc tgataatttt attttttgcg gcagcaaaat tgcccagcag
    10021 caggttggta acgccgtacc gcctttattg gcaaaagcta ttgctgaaag tattttaaaa
    10081 atgagtgaaa atgaataagc aatatccgaa aattaactat atcggtaata aagagaaaat
    10141 agcttcctgg atttgtgacc agcttccgtc tgatgtagat acagttgcag atgtatttag
    10201 tggaggctgt tcctttgcct atgaagccaa aaaacgcggc tatcgtgtga ttactaacga
    10261 tattttggca attaattacc aaattgcttt agcattaata gaaaacaacc atgaaacatt
    10321 aaatgacgat gatggcgcaa tgattttttc aggtagcccg catgccggtt ttatgagtca
    10381 gcgttatgcc gaaaaattct attttcacga tgaataccaa caacttgatt tgtaacgtaa
    10441 aaatataggg aaactggata accagtataa acgcgctttg gcgtttactt taatgcgtcg
    10501 cgccatgata cgtaaaatgc cctatacgga agatatgcgc ccgggcgata ccgctaatcc
    10561 ttatggcgca tccaaagcga tggtggaacg gatgttaacc gacatccaaa aggccgatcc
    10621 gcgttggagc gtgattttgt tgcgctattt caacccgatt ggggcgcacg aaagtggttt
    10681 gattggcgag cagccaaacg gcatcccgaa taatttgttg ccttatatct gccaagtggc
    10741 ggcaggcaaa ctgccgcaat tggcggtatt tggcgatgac taccctaccc ccgacggcac
    10801 ggggatgcgt gactatattc atgtgatgga tttggcagaa ggccatgtcg cggctatgca
    10861 ggcaaaaagt aatgtagcag gcacgcattt gctgaactta ggctccggcc gcgcttcttc
    10921 ggtattggaa atcatccgcg catttgaagc ggcttcgggt ttaaccattc catttgaaat
    10981 caaaccgcgc cgcgccggtg atttggcgtg ttcctttgcc gacccgtccc ataccaaaca
    11041 acaaaccggc tgggaaacca aacgcggctt gcagcaaatg atggaagatt cgtggcgttg
    11101 ggtcagccgc aaccccaacg gatatgggga ttaaatgcaa accgcaaaca aaaaaac
//
LOCUS       DAXIFD010000057        10909 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.057, whole genome shotgun sequence.
ACCESSION   DAXIFD010000057 DAXIFD010000000
VERSION     DAXIFD010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10909
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.057"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1038
                     /gene="rfbB"
                     /locus_tag="ACFOCN_001030"
     CDS             <1..1038
                     /gene="rfbB"
                     /locus_tag="ACFOCN_001030"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HFC6970191.1"
                     /translation="GFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYA
                     FEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAA
                     RAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKVSSDHL
                     VRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLF
                     VEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYED
                     LITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNVLNG
                     SYRLERLGTGK"
     gene            1101..1967
                     /gene="rfbA"
                     /locus_tag="ACFOCN_001031"
     CDS             1101..1967
                     /gene="rfbA"
                     /locus_tag="ACFOCN_001031"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HFC6970192.1"
                     /translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
                     GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
                     CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAVSIEEK
                     PQRPKSDWAVTGLYFYDNRAVEFAKQIKPSARGELEITDLNRMYLEDGSLSVQILGRG
                     FAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLSDEKLEELARPMAKN
                     QYGQYLLRLLKK"
     gene            2021..2560
                     /gene="rfbC"
                     /locus_tag="ACFOCN_001032"
     CDS             2021..2560
                     /gene="rfbC"
                     /locus_tag="ACFOCN_001032"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6970193.1"
                     /translation="MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTF
                     VQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVFDVAVDMRKDSPTFGKWVGEILS
                     AENKRQLWVPEGFAHGFYVLSDEAEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE
                     PSLSAKDLAGKMLAEAATF"
     gene            2722..4770
                     /locus_tag="ACFOCN_001033"
     CDS             2722..4770
                     /locus_tag="ACFOCN_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HFC6970194.1"
                     /translation="MIPAYIPLRSFGIRKIPNITQFLPEYSLNKTVFNAQTIIGWGLR
                     PTTHQARAFAQSHGLPFVALEDGFLRSLGLGVAGYPPFALVYDDIGIYYDTTRPSRLE
                     QLILAANMPSEMLNQAQQAIDLILTHRLSKYNHALDFSDGLVQDSKNIVLVIDQTFGD
                     MAIQYGGADEATFRQMFQTALAENPDAEIWVKTHPDVLSGKKQGYLTDLAQQPRVRLL
                     AEDINPISLLQAVDKVYCVTSQMGFEALLCGKPLVTFGLPWYAGWGVSDDRHPEINRL
                     VQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELY
                     CVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAE
                     QHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMGIYFNAEAPSRLEHILQNQNFDDQ
                     DFQTALKLQKMLTENHISKYNVGNSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYH
                     NLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQY
                     ADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGT
                     LIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
                     "
     gene            4907..6166
                     /locus_tag="ACFOCN_001034"
     CDS             4907..6166
                     /locus_tag="ACFOCN_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HFC6970195.1"
                     /translation="MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKT
                     VHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQEYITQHHIQAVVCFGDTRPYHV
                     IAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
                     KAPTPVHGGFTPMAKNAIRYYIELFRNPRKYPDYIHHRAPNAGHYLKPWSLSILKRLN
                     YYIEDIQIAKRVEAGKYGKFFIVPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAP
                     ADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVPLPVFLRHGLGMVTI
                     NSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLN
                     VTQINGNFYSQVFFPNKKTSNSSTPVI"
     gene            6533..7939
                     /locus_tag="ACFOCN_001035"
     CDS             6533..7939
                     /locus_tag="ACFOCN_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6970196.1"
                     /translation="MTAAPDILYRQAAALLEQSNTAQALPLLQQAAEQGYTEAAFVLG
                     DHLLQNGHPEQALPWLEAAAAQRHPKALFTLLQQREHNGTPTGQLLNEYAWLSEQGHL
                     EAQLILMRYHTQRNDPQSLYWAELAAAQYAAPAYYHLARHHQRQGDVATAIEQYEKAA
                     ALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEQAAQAGHIAAQTLLADLLAAQRKPE
                     ALEWYRRAADKEQAEAQAKLAQYALTGELSERDPFQAARYAKAAAEKDHPEALKIMGD
                     LYRYGLGIKADNHIAHDYYHRAAALGSAAAAQKLISDAALYHPQQYEQIKTAALQQQQ
                     TETIYRLAETQAHAIGRPADYNAARKNYMEAAGFHHKNAAAALGRIYHYGLGTAQDPR
                     AAAHWYAIAAEQNHPSAQYHLACFYYHGQGVGCHVPTACYWLQAAIGNGHTSAESLIS
                     LLEQWRREAHHAIGQKAV"
     gene            8157..9371
                     /gene="gltS"
                     /locus_tag="ACFOCN_001036"
     CDS             8157..9371
                     /gene="gltS"
                     /locus_tag="ACFOCN_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015501 - glutamate:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015813 - L-glutamate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HFC6970197.1"
                     /translation="MEWEFNSYYTLIAATLVLLVGKFLVQKIKFLRDFNIPEPVAGGL
                     VAAIILFALHEAYGVSFKFEKPLQNAFMLIFFTSIGLSADFSRLKAGGLPLVVFTAIV
                     GGFILVQNFVGVGLATALGLDPLIGLITGSVSLTGGHGTSGAWGPNFETQYGLVGATG
                     LGIASATFGLVFGGLIGGPVARRLINKMGRKPVENKKQDQDDNADDVFEQAKRTRLIT
                     AESAVETLAMFAACLAFAEIMDGFDKEYLFDLPKFVWCLFGGVVIRNILTAAFKVNMF
                     DRAIDVFGNASLSLFLAMALLNLKLWELTGLAGPVTVILAVQTVVMVLYATFVTYVFM
                     GRDYDAAVLAAGHCGFGLGATPTAVANMQSVTHTFGASHKAFLIVPMVGAFFVDLINA
                     AILTGFVNFFKG"
     gene            9470..10486
                     /locus_tag="ACFOCN_001037"
     CDS             9470..10486
                     /locus_tag="ACFOCN_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6970198.1"
                     /translation="MYRKLIALPFALLLAACGREEPPKALECANPAVLQGIRGNIQET
                     LTQEARSFAREDGRQFVDADKIIAAAYGLAFSLEHASETQEGGRTFCIADLNITVPSE
                     TLADAKANSPLLYGETALSDIVRQKTGGNVEFKDGVLTAAVRFLPVKDGQTAFVDNTV
                     GMAAQTLSAALLPYGVKSIVMIDGKAVKKEDAVRILSGKAREEEPSKPTPEDILEHNA
                     AGGDAGVPQAAEGAPEPEILHPDDGERADTVTVSRGEVEEARVQNQRAESEITKLWGG
                     LDTDVQKELVGEQRKWAQEKISNCRQAAAQADRQEYAEYLKLQCDTRMTRERIQYLRG
                     YSID"
     gene            10497..10694
                     /locus_tag="ACFOCN_001038"
     CDS             10497..10694
                     /locus_tag="ACFOCN_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970199.1"
                     /translation="MTTVPKSRIPVKPLPEKTTDEAKVEKWRQLGAEHGLSGEWAVAA
                     RLGENGFTEEQMENIANLFGR"
     gene            10712..10861
                     /locus_tag="ACFOCN_001039"
     CDS             10712..10861
                     /locus_tag="ACFOCN_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970200.1"
                     /translation="MPSETLLSVSDGILTNTVRRRKTAGFLCVSYADVPTHRTIQKAS
                     PYVPS"
BASE COUNT         2790 a         3091 c         2564 g         2464 t
ORIGIN      
        1 ggctttatcg gttctgccgt tgtccgtcat attatccgaa acacccaaga ttccgtcgtc
       61 aacctcgaca aactgaccta cgcgggcaat ctcgaatcgc tgaccgacat tgccgataat
      121 ccccgctatg ctttcgagca agtggacatt tgcgaccgcg ccgaactcga ccgcgtattc
      181 gcacaacacc ggcccgatgc cgtgatgcac ttggcggcgg aaagccatgt cgaccgctct
      241 atcggttcgg caggcgagtt tatccaaacc aatatcgtcg gcacattcaa tctgcttgaa
      301 gcagcccgcg cctactggca acaaatgccg tctgaacagc acgaagcctt ccgtttccac
      361 catatttcca ccgatgaagt ctatggcgat ttaggcggca cggacgattt gtttaccgaa
      421 accgcgccct acgcgccgtc cagcccctac tctgcctcta aagtgtccag cgaccacctc
      481 gtccgcgcgt ggttgcgtac ttacggcttg ccgaccattg taaccaactg ctccaacaac
      541 tacggtcctt accattttcc ggaaaaactc attcctttga tgattctgaa cgcgcttgac
      601 ggcaaaccgc tgcctgtgta cggcgacggt atgcaaatcc gcgactggct gtttgtcgaa
      661 gaccacgcgc gcgcactgta tcaggttgtt accgaaggtg ttgtcggcga aacctacaat
      721 atcggcggcc acaatgaaaa agccaatatt gaagtcgtca aaaccatctg cgccctgctg
      781 gaagaactcg ctcccgaaaa accggccggt gtggcgcgtt atgaagattt gattactttc
      841 gtacaagacc gccccggcca tgacgtacgc tacgccgtcg acgcagccaa aatcaggcgg
      901 gatttgggct ggctgccttt ggaaaccttc gagtccggcc tccgcaaaac cgtgcaatgg
      961 tatctggaca acaaaacctg gtggcaaaat gtattgaacg gcagctatcg tttggaacgt
     1021 ttaggtactg gaaaatagtt ttcagacggc atcccgacgc aatgccgtct gaaaacccat
     1081 cgcaaaggaa gaaaacaaag atgaaaggca tcatactggc aggcggcagc ggcacgcgcc
     1141 tctaccccat cacgcgcggc gtatccaaac agctcctgcc cgtgtacgac aaaccgatga
     1201 tttattaccc cttgtcggtt ttgatgctgg cgggaatccg cgatattttg gtgattaccg
     1261 cgcctgaaga caacgcctct ttcaaacgcc tgcttggcga cggcagcgat ttcggcattt
     1321 ccatcagtta tgccgtgcaa cccagtccgg acggcttggc acaggcattt atcatcggcg
     1381 aagaatttat cggcaacgac aatgtttgct tggttttggg cgacaatatt ttttacggtc
     1441 agtcgtttac gcaaacattg aaacaggcgg cagcgcaaac gcacggcgca accgtgtttg
     1501 cttatcaggt caaaaacccc gaacgtttcg gcgtggttga atttaacgaa aacttccgcg
     1561 ccgtttccat cgaagaaaaa ccgcaacggc ccaaatccga ttgggcggta accggcttgt
     1621 acttctacga caaccgtgcc gtcgagttcg ccaaacaaat caaaccgtcc gcacgcggcg
     1681 aattggaaat taccgacctc aaccggatgt atttggaaga cggctcgctc tccgttcaaa
     1741 tattgggacg cggtttcgcg tggctggaca ccggtacgca cgaaagcctg cacgaggcgg
     1801 cttcgttcgt ccaaaccgtg caaaacatcc aaaacctgca catcgcctgc ctggaagaaa
     1861 tcgcttggcg caacggttgg ctttccgatg aaaaactgga agaattggcg cgcccgatgg
     1921 cgaaaaacca atacggccaa tatttgctgc gcctgttgaa aaaataatgt ttgaggccgt
     1981 ctgaaacttt tcagacggcc tttagatgaa agataaaaag atgaacatca ttgataccgc
     2041 cattcctgac gtaaaactgc ttgagcccca agtcttcggc gacgcgcgcg gcttttttat
     2101 ggaaaccttc cgcgacgagt ggtttaaaac ccaagtctgc gaacgcacct tcgtgcagga
     2161 aaaccactcc aaatccggca aaggcgtatt gcgcggcctg cactaccaaa ccgaaaacac
     2221 acaaggcaaa ctcgtacgcg tagttgtcgg cgaagtattc gacgtggccg tcgatatgcg
     2281 taaagactcc cccactttcg gcaaatgggt aggcgagatt ctgtccgcag aaaacaaacg
     2341 ccaactgtgg gtacccgaag gtttcgcaca cggcttctat gtactgagcg atgaagccga
     2401 gttcgtctat aaatgcacag actattacaa cccgaatgcg gaacattccc taatttggaa
     2461 tgatgccaca gtgggaatcg actggccttt attgggagaa ccaagcctat cggccaagga
     2521 tttggcaggc aagatgcttg ctgaagcggc cacattttaa ttttcacttt taggtcatcg
     2581 tgggtaattt gtagcaagat gacctaattt ttaccagcta gcctactaac taaatttcta
     2641 ctatatttaa atagtcagaa aatttacaca aaatctgtta ataagatatt atattgtcag
     2701 taatattttt tcctatttat tgtgattcct gcctacattc ctcttcgctc tttcggtata
     2761 cgtaaaattc cgaatattac gcaatttcta ccggaatatt cacttaacaa aaccgtattc
     2821 aacgcccaaa ccatcattgg ctggggctta cgcccgacca cccaccaagc acgtgctttt
     2881 gcacaatcac atggcttgcc gtttgtagcc ttggaagacg gttttttacg ctcactgggc
     2941 ttaggcgtgg ccggttatcc gcccttcgca ctggtttacg acgatatcgg catctattac
     3001 gacacaaccc gcccatcgcg tttggagcag ttgattttag ccgcaaacat gccgtctgaa
     3061 atgcttaacc aagcgcagca ggccattgat ttgattttga cgcaccgttt gtctaaatat
     3121 aaccatgctc tggatttttc agacggcctc gtacaagaca gcaaaaacat tgttttggta
     3181 attgatcaaa ctttcggcga tatggcgatt caatatggcg gcgcagatga agccacattc
     3241 cgccaaatgt ttcagacggc cttagccgaa aatcctgatg cggaaatctg ggtcaaaacc
     3301 catcccgatg tattgagcgg caagaaacag ggttacctta ctgatttggc acagcagccg
     3361 cgtgtgcgtt tattggctga agacattaat ccgatttcgc tgctgcaagc ggtggacaaa
     3421 gtgtattgcg tgacctcgca aatgggtttt gaagccttgt tgtgcggcaa gcctttggta
     3481 acgtttggtt tgccgtggta tgccggctgg ggtgtaagcg acgaccgcca tcctgaaatc
     3541 aaccgccttg ttcaaaccca acgccgcgcc acccgcaact tgctgcagct cttcgccgca
     3601 gcctatctgc aatacagccg ctacctcaac cccaataccg gcgaagcagg cagcctcttt
     3661 gatgtcatcg actatctggc gacggtcaaa cgtaaaaacg acaaattgcg tggcgagtta
     3721 tattgcgtcg gtatgtcttt gtggaaacgc gcggttgcca aaccgttctt taacgtaccc
     3781 tcttgccgtc tgaaatttat ctcttccacc caaaaactgg caagggtcaa actgtccgac
     3841 gatgcacgca tcctggcttg gggcaacggc aaagaggcca tcgtccgctt tgccgaacaa
     3901 caccacatcc ccctgctgcg catggaagac ggctttatcc gctcggtcgg actcggctcc
     3961 aacttagtgc cgccgctgtc gctcgttacc gacgatatgg gtatttactt caatgccgaa
     4021 gccccatccc gccttgaaca catcctgcaa aaccaaaact tcgacgatca agactttcag
     4081 acggccttga agttgcaaaa aatgctgacc gaaaaccata tcagcaaata caacgtcggc
     4141 aactcagact ttaccgcccc atcaaccgac aaaaccgtga tcctcgttcc cggtcaggtt
     4201 gaggatgatg cgtctatccg ctatggttcg ccccaaatct atcacaatct ggatttgctc
     4261 cgtaccgtac gcgaacgaaa ccccaatgcc tatatcatct acaaaccgca tcccgatgta
     4321 gtcagcggta accgcatcgg ccatatttcc cctgaagatg ctgcacgata tgccgaccaa
     4381 accgccgaac aagccgacat cctgacctgt ctccaatacg cagacgaaat acataccatg
     4441 acttcgctga ccggttttga agccttgttg cgcggcaaaa aagtcagctg ctacggcctg
     4501 cctttttacg caggctgggg gcttacccaa gatctgctcc ccatcccgcg ccgtagccgc
     4561 agacttgagc tttggcagct gattgccggc acgctcatcc actatcccga ctacatccac
     4621 cccgaaaccc atcaggccat aaatgcggaa accgcagccc aaatcctgat acgacaaaaa
     4681 aatatgcaaa aaaacaacaa cggattacat cgcgggtgct ttgccaaaaa attaggtaaa
     4741 atcaaacaac tatatcgatc tttcaaataa ataccatcaa agttaacgat gcgtcataaa
     4801 cttgcctcta ttgcggcatc attgcctttg catcgttaat tctcttggcg tatgcttgaa
     4861 agttcaacct aaaactatta cataaaaaac aaaaccacat tgcaacatga aacagaccgt
     4921 cctcaaaaat aacctgcaaa acctgcttga aagcgcagaa aatatcctgc tgcttcaagg
     4981 ccctgtcggc gatttttttc tgcgccttgc cgactggctg actgcaaacg gcaaaaccgt
     5041 acataaattc aactttaatg caggcgacga ctatttttat ccgcccactc aagcgcatac
     5101 cgttgttttt aacgacaact acgatgcctt tcctgagttt ttgcaagaat acatcactca
     5161 acatcacatc caggccgttg tctgctttgg cgacacacgc ccttatcacg tcattgcaaa
     5221 acgcattgca aacgaaaacc aagccagttt ctgggcgttt gaagaaggct atttccgccc
     5281 ctactacatc accttagaaa aagacggcgt caacgcattt tccccgttgc cgcgccgtgc
     5341 cgactttttt cttgaacaat tccctaagct tgcccagcaa gaatataaag cgccaacgcc
     5401 ggtacacggc ggttttacgc ccatggcaaa aaacgctatc cgttactata tcgagttgtt
     5461 ccgcaatcca cgcaaatacc ccgactacat ccaccaccgc gcacccaatg ccggccatta
     5521 cctcaaaccg tggtcgctct ccatcctcaa gcgtttgaac tactatattg aagacatcca
     5581 aatcgccaaa cgtgtggaag caggcaaata cggcaagttt tttattgttc ccttacaggt
     5641 attcaacgac agccaagtcc gtatccattg cgactttccc agcgtccgca gcttcctgct
     5701 ccatgttttg agttcatttg ccgagcacgc gcctgccgat accaacatca tcatcaagca
     5761 tcatccgatg gaccgcggtt ttatcgacta ctggcgcgac attaaacgct ttatcaaaga
     5821 acaccccgaa ctcaaaggcc gcgtgattta tgtccatgat gtccccctgc ccgttttcct
     5881 gcgccacggt ctcggcatgg tcaccatcaa cagcaccagc ggcctgtccg gactgattca
     5941 caatatgcca gttaaggttc tcggccgtgc ctattatgat attcccggca ttactgacca
     6001 aaataccttg gcagaatttt ggaatcatcc gacaccgcct gacaaagagc tgttccatgc
     6061 ctaccgaatg taccacctca acgtgaccca aattaacggc aacttctaca gtcaggtgtt
     6121 tttccccaac aaaaaaacct ccaactcttc cacaccagta atctgactta gcgaaggaag
     6181 ttcaggccgt ctgaaaacat ttcagacggc ctgaaacaat caatacctta gctactgcca
     6241 tgtaaataaa acacaaaaat ctgcatttat cattaacaat aaattacaaa aacagtataa
     6301 tgaccgagct gccatgagcg cataccgact caacctgagc cctttataac acacaaaata
     6361 tggatgtatc cccaggcaaa acaatataac aagccaaaca tcctaaagat aagccggcaa
     6421 ggaaatacac tctgcaaaac gatgccgagc aatattttta caaagccctc aaccggtatc
     6481 gccgcccata tgccgcagca tccgtcttcc actttatatc cgcccgcaaa ccatgaccgc
     6541 cgctcctgat atcctatacc gtcaagccgc cgcccttttg gaacaatcca ataccgccca
     6601 agccctgccc ctgctgcaac aggccgcaga gcagggatat acggaagctg cttttgtatt
     6661 gggcgaccat ctgctgcaaa acggtcatcc ggagcaggca cttccatggt tggaagccgc
     6721 cgcggcccaa cgccatccca aggcactctt taccctgctg caacaacgcg aacacaacgg
     6781 caccccgacc ggacagcttc ttaacgaata cgcctggctg agtgagcaag gtcacctcga
     6841 agcccaatta attctcatgc gttaccacac gcagcgcaac gatccacaat cgctctactg
     6901 ggcggagctt gccgctgccc aatatgccgc acctgcgtat taccatttgg cacgccatca
     6961 tcaacgccaa ggcgacgttg caacagctat cgaacaatac gaaaaagcgg cagcgctcgg
     7021 cgtgactgca gcctgctggc aactcggtca aatctacttc tacggcacag gtgtcagccc
     7081 caaccacgca caagccgaac actatctcga acaagccgcg caagccggcc acatcgccgc
     7141 acaaaccctg ctggccgacc ttcttgctgc ccaacgcaaa cccgaagcct tagaatggta
     7201 tcgtcgtgcc gccgacaaag agcaagcgga agcacaggcc aagctggctc aatacgccct
     7261 gaccggcgaa ctttccgaac gcgatccgtt tcaagcggca cgatatgcca aagccgccgc
     7321 tgagaaagac catcccgaag ccctgaaaat catgggcgac ctctaccgct acggcctcgg
     7381 catcaaagct gacaaccata tcgcgcacga ttactaccac cgtgctgccg cgctgggttc
     7441 tgccgccgca gcacaaaaac tcatcagcga cgccgcgctg taccatccgc aacaatacga
     7501 acaaatcaaa actgccgccc tgcaacagca acaaaccgaa accatctacc gtttggcgga
     7561 aacacaagcc catgccatcg gtcgtcccgc cgactataat gccgcacgca aaaattacat
     7621 ggaagctgcc gggttccacc ataaaaacgc ggcggctgcc ttaggccgca tctaccatta
     7681 cggcctcggt acggcgcaag atcctcgggc ggctgcacac tggtacgcca ttgctgccga
     7741 acaaaaccac ccttccgccc aataccacct cgcctgtttt tactatcacg ggcaaggtgt
     7801 cggctgtcat gttccgaccg cctgctactg gctgcaggcc gccatcggca acggccacac
     7861 ttcggccgaa tcattaatat ccctattaga acaatggcga cgcgaagcac accatgccat
     7921 cggacaaaag gccgtctgaa aagatttaca ctcgcatttt ttgacaatct ttaactattc
     7981 ccctaatatt tgccagttat ttttcacgga cacgccattg ttttcatttc tttctgaaaa
     8041 caccttgtcc gcgcatcaat accatgacac tcggcggata acgccaagcg ttgaaacaca
     8101 ctacatccgg aacaaaaacg gatgctcgga aaaatatttc taggaggtga aacaacatgg
     8161 aatgggaatt caacagttat tacacactga ttgccgccac gctcgtgttg ctggttggta
     8221 aatttctggt tcaaaaaatc aaattcttac gagacttcaa tattcccgag ccggtcgctg
     8281 gcggtttggt tgccgcgatt atcctgtttg cgctgcacga ggcgtacggc gtgagcttca
     8341 aatttgagaa accgctgcaa aatgcgttta tgctgatttt tttcacgtcc atcggcttga
     8401 gcgcggattt ttcccgtttg aaggcgggcg gtttgccgct ggtggttttt accgcgattg
     8461 tgggcggatt tatcttggtg caaaactttg tcggggtcgg actggctacg gctttgggtt
     8521 tggacccgct catcggtctg attaccggtt cggtgtcgct gacgggcgga cacggtacgt
     8581 caggtgcgtg gggacctaat tttgaaacgc aatatggctt ggtcggcgca accggtttgg
     8641 gtattgcatc ggctactttc gggctggtgt tcggcggcct gatcggcggg ccggttgcgc
     8701 gccgcctgat caacaaaatg ggccgcaaac cggttgaaaa caaaaaacag gatcaggacg
     8761 acaacgcgga cgacgtgttc gagcaggcaa aacgcacccg cctgattacg gcggaatctg
     8821 ccgttgaaac gcttgccatg tttgccgcgt gtttggcgtt tgccgagatt atggacggct
     8881 tcgacaaaga atacctgttc gacctgccca aattcgtgtg gtgtctgttt ggcggcgtgg
     8941 tcatccgcaa catcctcact gccgcattca aggtcaatat gttcgaccgc gccatcgatg
     9001 tgttcggcaa tgcttcgctt tcgcttttct tggcaatggc gttgctgaat ttgaaactgt
     9061 gggagctgac cggtttggcg gggcctgtaa ccgtgattct tgccgtacaa accgtggtga
     9121 tggttttgta cgcgactttt gttacctatg tctttatggg gcgcgattat gatgcggcag
     9181 tattggctgc cggccattgc ggtttcggct tgggtgcaac gccgacggcg gtggcaaata
     9241 tgcagtccgt cacgcatact ttcggcgcgt cgcataaggc gtttttgatt gtgcctatgg
     9301 tcggcgcgtt cttcgtcgat ttgattaatg ccgcgattct caccggtttt gtgaatttct
     9361 ttaaaggctg attttccgcc tttccgccaa agcacctgca aggtttaccg cctgcaggtg
     9421 cttttgctat gatagccgct atcggtctgc accgtttgga aggaacatca tgtatcggaa
     9481 actcattgcg ctgccgtttg ccctgctgct tgccgcttgc ggcagggaag aaccgcccaa
     9541 ggcattggaa tgcgccaacc ccgccgtgtt gcaaggcata cgcggcaata ttcaggaaac
     9601 gctcacgcag gaagcgcgtt ctttcgcgcg cgaagacggc aggcagtttg tcgatgccga
     9661 caaaattatc gccgccgcct acggtttggc gttttctttg gaacacgctt cggaaacgca
     9721 ggaaggcggg cgcacgttct gtatcgccga tttgaacatt accgtgccgt ctgaaacgct
     9781 tgccgatgcc aaggcaaaca gccccctgct gtacggggaa accgctttgt cggatattgt
     9841 gcggcagaag acgggcggca atgtcgagtt taaagacggc gtattgacgg cagccgtccg
     9901 cttcctgccc gtcaaagacg gtcagacggc atttgtcgac aacacggtcg gtatggcggc
     9961 gcaaacgctg tctgccgcgc tgctgcctta cggcgtgaag agcatcgtga tgatagacgg
    10021 caaggcggtg aaaaaagaag acgcggtcag gattttgagc ggaaaagccc gtgaagaaga
    10081 accgtccaaa cccacgcccg aagacatttt ggaacacaat gccgccggcg gcgatgcggg
    10141 cgtaccccaa gccgcagaag gcgcgcccga accggaaatc ctgcatcctg acgacggcga
    10201 gcgtgccgat accgttaccg tatcacgggg cgaagtggaa gaggcgcgcg tacaaaacca
    10261 gcgtgcggaa tccgaaatta ccaaactttg gggaggactc gataccgacg tgcaaaaaga
    10321 gttggtcggc gaacaacgca agtgggcgca ggaaaaaatc agcaactgcc gacaagccgc
    10381 cgcgcaggca gaccggcagg aatacgccga atacctcaag ctgcaatgcg acacgcggat
    10441 gacgcgcgaa cggatacagt atcttcgcgg ctattccatc gattaggggc aaaccgatga
    10501 ctaccgtccc caaaagcagg attcccgtca aaccgctgcc cgaaaaaacc acagacgaag
    10561 ccaaagtcga aaaatggcgg cagctcggtg cggaacacgg tttgtcgggc gaatgggcag
    10621 ttgccgccag attgggcgag aacggtttta ccgaagaaca gatggaaaat atcgccaacc
    10681 tgttcggcag ataaagggaa aattgacgga aatgccgtct gaaaccctgt tatcggtttc
    10741 agacggcatt ttgactaata cggtacgcag gcgcaaaaca gccggctttt tatgtgtttc
    10801 ctatgctgat gttccaacac acaggacgat acaaaaagcg tcgccctatg tgccgtcctg
    10861 attcggaaag ggttacgctc ctcccaaata tagtggatta acaaaaacc
//
LOCUS       DAXIFD010000058        10893 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.058, whole genome shotgun sequence.
ACCESSION   DAXIFD010000058 DAXIFD010000000
VERSION     DAXIFD010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10893
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.058"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(148..2010)
                     /gene="hscA"
                     /locus_tag="ACFOCN_001040"
     CDS             complement(148..2010)
                     /gene="hscA"
                     /locus_tag="ACFOCN_001040"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HFC6970201.1"
                     /translation="MALLQISEPGMSAAPHRHRLAAGIDLGTTNSLVATVRSGSAACL
                     PDAEGRVTLPSVVRYLENGGIEVGKTALSAQKTDPLNTVSSAKRLIGRTLADLHQNTH
                     YLPYRFGDNQRVIELHTRQGVKTPVEVSAEILKTLKSRAEETLGGDLVGVVITVPAYF
                     DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDNASEGTFVVYDLGGGTFDVSVL
                     QLTKGLFEVKATGGNSALGGDDFDHRLFCRLLEQNGLSQLNEQDSQLLLSLVRAAKEQ
                     LTTQTEARIQATLSDGMAIDTSISRAEFHNLTQHLVMKTLEPVTQALKDAGVGKNEVK
                     GVIMVGGSTRMLHVQQAVATFFGQTPLNNLNPDEVVALGAAIQANVLAGNKTDGEWLL
                     LDVTPLSLGLETYGGLAEKIIPRNSTIPTARAQDFTTFKDGQTAMTIHVVQGERELVS
                     DCRSLAKFTLRGIPPMAAGAARIRVTFQIDADGLLSVSAQEQSTGVQAQIEVKPSYGL
                     DDGAITRMLKDSMDNAAEDMAARARAEAVVEAESLTDAVNAALELDSDLLDAKELQQI
                     RQGIADLQGRLKDGKAEDIRSAVAKLSRSTDNFAAKRMNRNIQRALTGQSVDNI"
     gene            2181..3053
                     /gene="hpnD"
                     /locus_tag="ACFOCN_001041"
     CDS             2181..3053
                     /gene="hpnD"
                     /locus_tag="ACFOCN_001041"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016767 - geranylgeranyl-diphosphate
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HFC6970202.1"
                     /translation="MKGLDYCRQKAEESRSSFLSGFRFLTQEKRDAVTVLYAFCRELD
                     DVVDECSNPDVAQATLNWWRGDLDKVFGGAMPEHPVNQALRQVKETFKLPKYELEALI
                     DGMQMDLLRVRYGSFEELKLYCRRVAGVVGCLIARILGFSDDQTLEYADKMGLALQLT
                     NIIRDVGEDARRGRIYLPMEEMRRFDVPASVILQCSPTGNFAELMAFQIKRARETYRE
                     AVSLLPDADKKAQKVGLVMAAVYYALLNEIDRDGAQNVLKYKIALPSPRKKRIALKTW
                     LFGFKPRPGTPERA"
     gene            3132..4445
                     /gene="hpnE"
                     /locus_tag="ACFOCN_001042"
     CDS             3132..4445
                     /gene="hpnE"
                     /locus_tag="ACFOCN_001042"
                     /EC_number="1.17.8.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxysqualene dehydroxylase HpnE"
                     /protein_id="HFC6970203.1"
                     /translation="MMNTPHPRPKIAVIGAGWAGLSAAVTLARHADVTLFEAGRQAGG
                     RARTLAGNTDGFGFLDNGQHILLGAYRGVLRLMKTIGSDPRAAFLRVPLHWHMHGGLQ
                     FRALPLPAPLHILGGVLLARRAPTAFKAKLLADMSDLQKSARLGQPDTTVAQWLKQRN
                     VPRAAVMQFWQPLVWGALNTPLETASLRVLCNVLSDGVLTKKSGSDYLLPKQDLGAIV
                     AEPALAELQRLGADIRLETRVCRLNPLPDGKVLVNGEAFDAAVPATAPYHAAALLPEG
                     TPEHVQTAYQNLRYHAITTVYLRYAEPVRLPAPLTGLADGTVQWLLCRGRLGLPENEV
                     SAVISVSDRVGAFANRAWADKAHADLKRILPHLGEPEAVRVITEKRATTAADAPPPDL
                     SWLHRHRIFPAGDYLHPDYPATLEAAVQSGFASAEACLQSLNDAV"
     gene            4529..5248
                     /locus_tag="ACFOCN_001043"
     CDS             4529..5248
                     /locus_tag="ACFOCN_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6970204.1"
                     /translation="MATLTDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE
                     KVYDAIVEAGYPEPFAICFDLISAEEKEFEHFAATIAEATQGKLDGIVHCAGYFYALS
                     PLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGF
                     GASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVL
                     PAFVWWASAESKGRSGEIVYL"
     gene            5413..6084
                     /locus_tag="ACFOCN_001044"
     CDS             5413..6084
                     /locus_tag="ACFOCN_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HFC6970205.1"
                     /translation="MKTVSTAVVLAAAAVSLTGCATESSRSLEVEKVASYNTQYHGVR
                     TPISVGTFDNRSSFQKGIFSDGEDRLGSQAKTILVTHLQQTNRFNVLNRTNLNALKQE
                     SGISGKAHNLKGADYVVTGDVTEFGRRDVGDHQLFGILGRGKSQIAYAKVALNIVNVN
                     TSEIVYSAQGAGEYALSNREIIGFGGTSGYDATLNGKVLDLAIREAVNSLVQAVDNGA
                     WQPNR"
     gene            6094..6462
                     /locus_tag="ACFOCN_001045"
     CDS             6094..6462
                     /locus_tag="ACFOCN_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4810 domain-containing protein"
                     /protein_id="HFC6970206.1"
                     /translation="MNPKTLSRLSLCAAVLALTACGDNGQKSLYYYGGYPDTVYEGLK
                     NDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRL
                     FPESGVFMDFLMKTGKGGKR"
     gene            6459..7106
                     /locus_tag="ACFOCN_001046"
     CDS             6459..7106
                     /locus_tag="ACFOCN_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF799 domain-containing protein"
                     /protein_id="HFC6970207.1"
                     /translation="MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPL
                     NESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQ
                     IFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSN
                     SGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK"
     gene            7395..8478
                     /locus_tag="ACFOCN_001047"
                     /pseudo
     CDS             7395..8478
                     /locus_tag="ACFOCN_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519957.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SbmA/BacA-like family transporter"
     gene            complement(8648..8857)
                     /locus_tag="ACFOCN_001048"
     CDS             complement(8648..8857)
                     /locus_tag="ACFOCN_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970208.1"
                     /translation="MNYFGMVEFLRLMAMVRPPFVFFSGTRSELPTYLDLVAELRLTG
                     WERFAGSQTLTVSSTSTAIQATTTT"
     gene            complement(8854..9150)
                     /locus_tag="ACFOCN_001049"
     CDS             complement(8854..9150)
                     /locus_tag="ACFOCN_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase UvrD"
                     /protein_id="HFC6970209.1"
                     /translation="MDAKHRLKKYVYHLLVAIDQLFNALTGGAADETLSSRTYRGARL
                     AQKPKTRWKVLYTLINGVFFDRQHCRQAYISELKGRQHDARFNQSRAAGEKGTR"
     gene            complement(9129..9734)
                     /locus_tag="ACFOCN_001050"
     CDS             complement(9129..9734)
                     /locus_tag="ACFOCN_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970210.1"
                     /translation="MTIYFKNGFYDDTLGSIPEGAVAVRAEEYAALLAGQTQGGQIAA
                     DSDGRPVLTPPRPSEYHEWDGKKWEIGEAAAAARFAEQKTATAFRLAAKADELKNSLL
                     AGYPQVEIDSFYRQEKEALARQADNNAPTPMLAQIAAARGVELDVLIEKVVEKSARLA
                     VAAGAIIGKRQQLEDKLNTIETAPGLDALEKEIEEWTLNIG"
     gene            9819..10098
                     /locus_tag="ACFOCN_001051"
                     /pseudo
     CDS             9819..10098
                     /locus_tag="ACFOCN_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            10106..10417
                     /locus_tag="ACFOCN_001052"
     CDS             10106..10417
                     /locus_tag="ACFOCN_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HFC6970211.1"
                     /translation="MKMHNPAHPGLVLKEYINGASITDIAKRLGVSRVALSRIVNAQS
                     SITPEMAVRLSQLLNTSPDFWLNMQAGYDLWQIRQRKTFDIAPLFPEPPLSSMQTGAR
                     A"
BASE COUNT         2347 a         3065 c         3001 g         2480 t
ORIGIN      
        1 tttaaattta attcactata cacgcccttg atgacggttt tcatcgaata gacaatgcct
       61 gacttttcca tatcgatgtt tttcaagtgt tttcgagcct tcagacggca tcaggttata
      121 tctatgccgt ctgaaaccgt ttaagtatca aatattatcg acactctggc ctgtcaatgc
      181 gcgttggata ttgcggttca tgcgtttggc ggcgaagttg tcggtgctgc ggctgagttt
      241 ggcgacggcg gagcggatgt cttcggcttt tccgtctttc agacggcctt gcaaatcggc
      301 gatgccttgc cggatctgtt gcaattcttt ggcatccagt aaatcgctgt ccaactcgag
      361 ggcggcgttg acggcatcgg tcaggctttc ggcttcgact acggcttcgg cgcgggcgcg
      421 tgccgccata tcttcggcgg cgttgtccat actgtcttta agcattcggg taatcgcgcc
      481 gtcgtccaag ccgtaggaag gtttgacttc gatttgcgcc tgtacgccgg tgctttgttc
      541 ttgggcggaa acggacagca gcccgtccgc atcgatttgg aaggttacgc ggatacgcgc
      601 cgcacccgcc gccatcggtg gaatgccgcg cagggtgaat ttggcaaggc tgcggcagtc
      661 agaaacgagc tcgcgctcgc cttgcacgac gtgtatcgtc atcgcggttt gaccgtcttt
      721 gaaggtggta aagtcctgcg cgcgcgcggt ggggatggtg gaattgcgcg ggatgatttt
      781 ttccgccaag ccgccgtagg tttccaaacc gagcgacaaa ggtgtaacgt ccagcagcag
      841 ccattcgccg tcggttttgt tgcctgcgag gacgtttgcc tgtatggcgg cgccgagcgc
      901 gacgacttcg tcgggattga ggttgttcag cggggtttga ccaaagaaag tggcaaccgc
      961 ttgttgaacg tgcagcatac gggtcgaacc gccgaccata atcacgcctt tgacttcgtt
     1021 tttaccgaca ccggcatctt tcaacgcctg tgtgaccggt tcgagcgttt tcatcaccaa
     1081 atgctgcgtc aggttgtgga actcggcgcg actgatgctt gtgtcgattg ccatgccgtc
     1141 tgaaagcgtc gcctgaatgc gcgcttcggt ttgcgtggtt aattgttctt tggcggcgcg
     1201 gacgagcgag agcaggagtt ggctgtcttg ttcgttgagt tgggagagtc cgttttgttc
     1261 gagcaggcgg cagaacaggc ggtggtcgaa atcgtcgccg cccaacgcgc tgttgccgcc
     1321 ggtggctttg acttcaaaca gtcctttggt cagttgcaat acggatacgt cgaatgtgcc
     1381 gccccctaag tcgtacacga caaacgtgcc ttccgaggcg ttgtccagcc cgtaggcgat
     1441 tgcggcagcg gtgggttcgt tgagcaggcg caatacgttc aaacccgcca gacgcgcggc
     1501 atctttggtg gcttggcgtt gggcatcatc gaaataggca gggacggtaa tcaccacgcc
     1561 gaccaaatcg ccgcccaagg tttcttcggc gcgcgattta agggttttga ggatttccgc
     1621 cgacacttcg acaggcgttt tcaccccctg ccgcgtatgc agttcgataa cgcgttgatt
     1681 gtcgccgaaa cggtaaggca ggtaatgcgt attttgatgc agatcggcaa gcgtccgccc
     1741 gataaggcgt ttggcggagc tgacggtgtt cagcgggtcg gttttttggg cggacagggc
     1801 ggttttgccg acttcaatgc cgccgttttc cagatagcgg acgacggaag gcagggtaac
     1861 gcgcccttcg gcatcgggca gacaggcggc actgccgctg cggacggtgg cgaccaagct
     1921 gttggtcgta cccaaatcga tgcctgccgc caaacggtgc cggtgcgggg cggcggacat
     1981 acccggttct gaaatctgca aaagagccat aaattctgcc tgtcggtgcg gtgtgtaaag
     2041 gaaggaaagc ggcattttaa cagaatttgc gccgatagtt gagcaaaccg ctaaggattg
     2101 ggtcgtgccg ccgaaattgc cctctaccgc caaatgccga taaaatccgc ctttcccgcc
     2161 catcattagg aatataaatc gtgaaaggac tcgactattg ccgccaaaaa gcagaagaaa
     2221 gccgctccag ttttttgtcg ggcttccgtt tcctgactca ggaaaaacgg gatgcggtaa
     2281 cggttttata tgctttttgc cgcgaattgg acgatgtggt tgacgaatgt tccaaccccg
     2341 atgttgcaca ggcgacattg aactggtggc gcggcgattt ggacaaggta ttcggcggcg
     2401 cgatgccgga acaccccgtc aatcaggcct tgcggcaagt taaggaaacc ttcaagctgc
     2461 cgaaatatga actggaagcc ttaatcgacg ggatgcagat ggatttgctt cgggtgcgtt
     2521 acggcagttt tgaagaatta aaactgtatt gccgccgcgt cgcgggcgtg gtcggctgcc
     2581 tgattgcgcg gattttgggg ttttcagacg accaaacgct ggaatacgcc gacaagatgg
     2641 gacttgcgct gcaactgacc aacatcatcc gcgatgtcgg cgaagacgcg cgcaggggac
     2701 ggatttacct gccgatggag gaaatgcggc ggtttgatgt ccccgcaagc gtgattttgc
     2761 aatgcagccc gacgggcaat tttgccgaat tgatggcgtt ccaaatcaaa cgcgcccgtg
     2821 aaacctaccg cgaagccgta tcgctgctgc ctgatgccga taaaaaagcc caaaaagtcg
     2881 gactggtcat ggcggcggtt tattacgcgc ttttaaacga aatcgaccgg gacggcgcgc
     2941 aaaacgtcct caaatacaaa atcgccctcc cttcgccgcg caaaaaacgc attgccctga
     3001 aaacctggtt attcggattc aaaccgcgcc ccggcacgcc ggaacgggca taaggcgcat
     3061 accgcccgcc cttcaggaaa acccaacccc cgccgccccg aaaaacgggg tttcaaccat
     3121 tggaggaata aatgatgaac acgccgcatc cgcgcccgaa aatcgccgtc atcggcgcag
     3181 gctgggcagg actgtccgcc gccgtcacct tggcgcggca cgccgacgtt accctgtttg
     3241 aagccggccg gcaggcgggc ggcagggcgc gcacactggc cggaaatacc gacggtttcg
     3301 gttttttgga caacgggcag cacattttgc tcggcgcata ccggggcgtg ttgcgcctga
     3361 tgaaaaccat cggttcggat ccccgtgccg cctttttgcg cgtaccgctg cactggcata
     3421 tgcacggcgg tttgcagttc cgcgccctcc ccctgcccgc gccgctgcat attttgggcg
     3481 gcgtgctgct tgcccggcgt gcaccgactg cattcaaagc caaactgctt gccgatatgt
     3541 ccgatttgca gaagtccgca cgcctcggac agcccgacac gacagttgca caatggctga
     3601 aacagcggaa cgtgccgcgt gccgccgtga tgcagttttg gcagccgctg gtgtggggtg
     3661 cgctcaacac gcctttggaa accgcaagcc tgcgcgtgtt gtgcaacgtt ttgtccgacg
     3721 gcgtgctgac gaaaaaatcc ggcagcgact atctcctacc caagcaggat ttgggcgcaa
     3781 tcgtcgccga acccgccttg gcggagcttc aacggctcgg cgcggacatc cgcctcgaaa
     3841 cgcgcgtatg ccgtctgaac cccctcccgg acgggaaagt gctcgtcaac ggcgaagctt
     3901 tcgatgccgc cgtccccgcc accgcgccct accacgccgc cgcgctcctg cccgaaggca
     3961 cgcccgaaca cgttcagacg gcatatcaaa accttcgcta tcacgccatc accaccgtct
     4021 atctgcgcta cgccgaaccc gtccgcctgc ccgccccgct gaccggcctt gccgacggca
     4081 cggtgcaatg gctgctttgc cggggcaggc tcggactgcc tgaaaacgaa gtgtccgccg
     4141 tcatcagcgt ttccgaccgc gtcggcgcgt ttgcaaaccg ggcgtgggcg gacaaagccc
     4201 acgccgacct caaacgcatc cttccgcatt tgggcgaacc cgaagccgtg cgcgtcatca
     4261 ccgaaaaacg cgccacaacc gcagccgatg ccccaccacc ggatttgtcg tggctgcacc
     4321 ggcaccgcat cttccccgcc ggcgactacc tccacccaga ctaccccgcc acgctcgaag
     4381 ccgccgtaca atcaggtttc gcttccgcgg aagcctgcct gcaaagcctg aacgatgccg
     4441 tctgaaaacg ccggccggca tcaggacgct ttacaaggtg cggcaaaacg ctaaaatacc
     4501 cccgaccgac caccaaaaag gaaaaagtat ggcgacactg accgacaaaa ccatcttagt
     4561 taccggcgca tcgcaagggc tgggcgaaca ggttgccaaa gcctatgcgg cggcaggcgc
     4621 aaccgtgatt ctggtggcac gccatcagaa aaaactggaa aaagtctatg acgcgattgt
     4681 cgaagccgga taccccgaac cattcgccat ctgctttgac cttattagcg cggaagaaaa
     4741 agaatttgaa catttcgccg ccaccattgc cgaagccacg caaggcaaac tggacggcat
     4801 cgtccactgc gccggctatt tttacgccct ctcgccgctg gatttccaaa ccgtcgccga
     4861 atgggtcaac caataccgca tcaacaccgt cgcacctatg gggctgaccc gcgccctgtt
     4921 cccgctgctg aagcagtcgc ccgacgcgtc cgtcatcttc gtcggcgaaa gccacggcga
     4981 aacacccaaa gcctactggg gcggcttcgg cgcgtccaaa gccgcgttga actacctgtg
     5041 caaagtcgcc gccgacgaat gggaacgctt cggcaacctg cgcgccaacg tcctcgtccc
     5101 cggccccatc aattccccgc aacgcatcaa atcccatccg ggcgaagcca aaagcgaacg
     5161 caaaagctac ggggacgtgc tgcccgcatt tgtctggtgg gcaagtgccg aaagcaaagg
     5221 gcggagtggc gaaatcgttt acctctaaat ccggaaaagg caggcatccc gcccgcgccg
     5281 cgattccgtt tgaaaaatat ccgtaccttc cgcgcgcatc cgtcccgcac agacaaacac
     5341 cttgacttaa atttacataa ggacaataat gacaacccgt tatttcctta acttgacctt
     5401 agggtaaatt ttatgaaaac cgtttccacc gccgttgtcc ttgccgccgc tgccgtttca
     5461 ctgaccggct gtgcgaccga atcctcacgc agtctcgagg tagagaaagt cgcctcctac
     5521 aatacgcaat atcacggtgt tcgtaccccg atttccgtcg gaacattcga caaccgctcc
     5581 agcttccaaa aaggcatttt ctccgacggg gaagaccgtt tgggcagcca ggcaaaaacc
     5641 attctggtaa cgcacctgca acagaccaac cgcttcaacg tactgaaccg caccaatttg
     5701 aacgcattaa aacaggaatc cggcatttcc ggcaaagcgc ataacctgaa aggcgcagat
     5761 tatgtcgtta ccggcgatgt aaccgaattc ggacgcagag atgtcggcga tcatcagctc
     5821 ttcggcattt tgggtcgcgg caaatcgcaa atcgcctatg caaaagtggc tctgaatatc
     5881 gtcaacgtca atacttccga aatcgtctat tccgcacagg gcgcgggcga atacgcactt
     5941 tccaaccgtg aaatcatcgg tttcggcggc acttccggct acgatgcgac tttgaacggc
     6001 aaagttttag acttggcaat ccgcgaagcc gtcaacagcc tggttcaggc tgttgacaac
     6061 ggcgcatggc aacccaaccg ttaaggagaa atgatgaatc cgaaaacctt gagccgtttg
     6121 tcgctgtgtg cggcggtctt ggctctgacc gcctgcggcg acaacgggca aaaatccctg
     6181 tattattacg gcggctatcc cgataccgtc tatgaaggtt tgaaaaacga cgacacttcg
     6241 ttgggcaagc agaccgaaaa gatggaaaaa tactttgtgg aagccggcaa caaaaaaatg
     6301 aatgccgccc cgggtgcgca cgcccatctg ggactgctgc tttcccgttc gggagacaaa
     6361 gagggcgcgt tccgccagtt tgaagaagag aaaaggctgt ttcccgaatc gggcgtattt
     6421 atggacttcc tgatgaaaac cggtaaagga ggcaagcgat gaaacctttg attttagggc
     6481 ttgccgccgt gttggcgctg tctgcctgcc aagttcaaaa agcgcccgat ttcgactaca
     6541 cgtcattcaa ggaaagcaaa ccggcttcaa ttttggtggt tccgccgctg aacgaatcgc
     6601 ccgatgtcaa cggaacatgg ggtgtactgg cttcgaccgc cgcgccgctt tccgaagccg
     6661 gctattacgt cttccccgcc gcagtcgtgg aggaaacctt caaacaaaac ggcttgacca
     6721 atgccgccga tattcacgcc gtccggccgg aaaaactgca tcagattttc ggcaatgatg
     6781 cggttttgta cattacggtt accgaatacg gcacttcata tcaaatttta gacagcgtga
     6841 cgaccgtatc cgccaaagca cggctggtcg attcccgcaa cggaaaagag ttgtggtcgg
     6901 gttcggccag catccgcgaa ggcagcaaca acagcaacag cggcctgttg ggggctttgg
     6961 tcagcgcagt ggtcaatcag attgccaaca gcctgaccga ccgcggttat caggtttcca
     7021 aaaccgccgc atacaacctg ctgtcgccct attctcacaa cggcatcttg aaaggtccga
     7081 gattcgtcga agagcagccc aaataagcat atgccgtctg aacctctccg agcttcagac
     7141 ggcatatgcg aatcttgata cttgcaagcc gcaccgccca aaatcgggcg gccggtttca
     7201 atatccgaac aaggttcggg ttctgtattt tgcagaaccc gaacctttta ttcaaattta
     7261 aacttaattc cggcgtggtt gtatggtaaa ttaacacgca atatgccctg acctgcaaaa
     7321 cttccccaaa cttcatcaaa aaatcaactg tacccgtctt tttcagacgg cattgatacc
     7381 gtaagaaatt tcccatgcag aaatggcaaa ccgagcttta ttccacaccg ctttggcttt
     7441 gtctgacact gaaaagcgcg gtcaaagtct tgctgctgat tacggcgatg attacgctgg
     7501 tgttaaccga aatgcggctg aatgtgttga gtacctttat gtccaaaggg ctttacgact
     7561 cgatgcagga tttgaaatgc ttcggcattt tggatgtttg ctgcaatgaa cgcgggcgtg
     7621 gtgctgatac gggcgtttaa caacgtcgtc aacgacttcc tcgatcaagg cttggcgatt
     7681 aaatggtcgg agcggctcaa cgaagtgctg acagcacgct ggcttgccga caaaaactac
     7741 taccgcctgc aaatgcgccg ccacgcgcca gacaacatcg accagcgtat ccaacaggac
     7801 gcgcaggaat ttatcgcttc gaccatcgaa tttgtgcgcg gcatggtcaa ttcggtcgtt
     7861 acttctctgg aatttgccgt tgttttgcgg ggcttggctg gcatcctgac cgtgttcggc
     7921 ttcgacattc cgcacggcat cgtttggttt gtctatatat ttgtgatttt ggcgaccttt
     7981 atcgccatgt ggataggcaa ccctttgatt cgttacaatt atgaaaacga aaaactcaac
     8041 ggcgactacc gttattccct catccgcgtg cgcgaccacg ccgaaagcgt ggcgttttac
     8101 aacggcgaaa aacatgaata cgaccagctt tccgaccgct ttaaagccat tatccgcaac
     8161 cgttggcgca ttgcgcggca aagcgtctgc ttaagcggct ttaacgatat gttcaccaac
     8221 ggcatcaaac tcttcccgat tattttgcaa gctccgcgcc tgtttgccgg acaaatcaaa
     8281 atcggcgaca tccagcaaac cgtccaagcc ttcgcgcgac tgcaaaacgc gctttctttc
     8341 tttcgaatgt tctacaacaa attcaccgcc taccgcgccc gattggagcg tctgtacggc
     8401 tttttgctga gtaccgaaga acaacacagc gcgcggcaac ccgagattag cgaagtttca
     8461 gacggcattg cactggaatg taaggcggcg gcagcttttg cacgaattgg cggcagcttt
     8521 tgcaccgccg aagcgtagga aattgtatta gcttttgcac aaatttatcc ccgtttaatg
     8581 gtctgttaaa cggggattat cttatgcctt taaaagtagt acgctacttg cggtcagaac
     8641 ttataaatca ggtggtcgtc gtagcttgaa ttgctgttga tgtgctgctc acagtcaagg
     8701 tttggctgcc tgcaaaacgc tcccatccgg tcaggcgcag ttctgccacg aggtcaagat
     8761 aagtaggcag ttcgctgcgg gtgccggaga agaagacaaa tggcggccgc accattgcca
     8821 tcaggcgcag aaactctacc atgccgaagt agttcatcgc gtcccctttt ccccggcggc
     8881 gcggctttgg ttgaaccgcg cgtcgtgctg cctgcctttc agttcgctga tatacgcctg
     8941 ccgacagtgt tggcggtcga aaaacacgcc gttgatcagg gtgtataaaa ccttccagcg
     9001 ggttttgggc ttttgggcga gccgcgcgcc gcgataggtg cggcttgaga gggtttcgtc
     9061 cgccgcgccg ccggttaggg cgttgaacag ttggtcgatg gctaccaaca ggtggtaaac
     9121 gtattttttc agccgatgtt tagcgtccat tcttcgattt ccttttccag cgcgtccaat
     9181 cctggcgcgg tttcgatggt gttcaatttg tcttcgagct gctgccgctt tccgataatc
     9241 gcgccggcgg caacggccag gcgggcggat ttttcgacaa ctttttcaat caaaacgtcc
     9301 aattccacgc cccttgcggc ggcgatttgc gccagcatcg gggtcggggc gttgttgtcc
     9361 gcctgccgcg cgagggcttc tttttcctgc ctgtaaaagc tgtcgatttc cacttgggga
     9421 tagcccgcca agaggctgtt tttgagttcg tccgcctttg ccgcgaggcg gaatgccgtg
     9481 gcggtttttt gttcggcgaa acgggcggcg gcagcggctt cgccgatttc ccatttcttg
     9541 ccgtcccatt cgtggtattc ggacgggcgc ggcggggtta aaacggggcg gccgtcggaa
     9601 tctgcggcaa tctgcccgcc ctgcgtctgt cctgccaaaa gggcggcgta ttcttcggcg
     9661 cggacggcaa ccgcgccttc ggggatgctg cccaatgtgt cgtcgtaaaa gccgtttttg
     9721 aaatagatgg tcatttcggg gtttcctttt ttgtatatcg tcgctttaca attaaataaa
     9781 agttttgtat cctttggcga tacagacggg gtgggatgat gattgtttct ttcaaacaca
     9841 aagggcttga acgctttttt taaaacaggc tcgctatcgg gcatccaagc cgggcattcc
     9901 gtcaaactga atctgcttct aaccgcgctg aatgccgcgc aaacgccttc ggatatggct
     9961 gtgccgagtt ggaatcttca tcccctcaag ggcagtttgt cgggacattg ggcggttaaa
    10021 gtcaacggaa attggcgttt gacttttcgt ttcaacgacg gcaatgccga agttgtcgat
    10081 tatcaggatt atcactagga ataatatgaa aatgcacaat cctgcccacc cgggccttgt
    10141 tttaaaagag tatattaacg gtgcaagcat taccgatata gcgaaacgcc tgggtgtcag
    10201 ccgggttgcc ttatcgcgca ttgtcaacgc ccaatcttcg attacgcccg agatggcggt
    10261 tcgtttaagc caactgctca atacttcgcc tgatttttgg ctgaatatgc aggccggtta
    10321 tgatttgtgg caaatcaggc aacgcaaaac ttttgatatt gcgcccttat ttcccgaacc
    10381 gcctttgtct tcgatgcaaa caggtgcaag ggcttaaccc tgcggccgct gcttatcggg
    10441 cgcgcccgac tatcctttcc cgcgcggttt cggccgtgcg gttttttgtt gccggtgccg
    10501 tccgaagggg gcagcggctt tttgcgcggt cattcccgcc tttcgttatt cccgccactt
    10561 tccgtcattc ccgcgaaggc gggaatcccg aaacccctgc cgccgtcatt cccgcgcagg
    10621 cgggaatcca gtccgttcgg tttcagccgt ttccgataga ttcctgccgc gtttggggtc
    10681 tggattcccg cctgcgcggg aatgacggtg gcgggggttt ctgttttttc cgatagattc
    10741 ctgccgcgtt taggggctgg attcccgctt tcgcgggaat gacgaaagcg gcgggaatga
    10801 cgaagagtgg caggattggc ggggcatagg tttcggggga ttggcggcgc ggccggtttc
    10861 ggtcggattg cttggatcgg cgggctgaag ccc
//
LOCUS       DAXIFD010000059        10793 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.059, whole genome shotgun sequence.
ACCESSION   DAXIFD010000059 DAXIFD010000000
VERSION     DAXIFD010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10793
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.059"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..209)
                     /locus_tag="ACFOCN_001053"
     CDS             complement(<1..209)
                     /locus_tag="ACFOCN_001053"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970212.1"
                     /translation="MPSEAFRQQAARSTPCGFFLRISAAKAQTLKLPTPFFAFLFFDT
                     RAFVLFPAIPKTKSGRNLSEKQQPFR"
     gene            complement(213..1847)
                     /gene="groL"
                     /locus_tag="ACFOCN_001054"
     CDS             complement(213..1847)
                     /gene="groL"
                     /locus_tag="ACFOCN_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271863.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HFC6970213.1"
                     /translation="MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAF
                     GGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAE
                     GMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGA
                     IIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP
                     FVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAV
                     KAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIID
                     GFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESP
                     LRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAA
                     SIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMGGMM"
     gene            complement(1940..2230)
                     /locus_tag="ACFOCN_001055"
     CDS             complement(1940..2230)
                     /locus_tag="ACFOCN_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HFC6970214.1"
                     /translation="MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVG
                     AGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK"
     gene            2459..3112
                     /locus_tag="ACFOCN_001056"
     CDS             2459..3112
                     /locus_tag="ACFOCN_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element IS1016C family transposase"
                     /protein_id="HFC6970215.1"
                     /translation="MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAVLFY
                     RKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRV
                     YTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSCDKLDVSGFIHYRINHSKEFADRQ
                     NHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILRDWCGI"
     gene            3325..4860
                     /locus_tag="ACFOCN_001057"
     CDS             3325..4860
                     /locus_tag="ACFOCN_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6970216.1"
                     /translation="MSDSKTKERATFRTRRAFMIAAIGSAVGLGNIWRFPYIAFENGG
                     GAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVI
                     CIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAG
                     VWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWS
                     KLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAG
                     IGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAG
                     VTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFV
                     NTYGIVAAGFVYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFK
                     DTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQG
                     EEK"
     gene            4857..4949
                     /locus_tag="ACFOCN_001058"
     CDS             4857..4949
                     /locus_tag="ACFOCN_001058"
                     /inference="COORDINATES: protein motif:HMM:NF033493.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HFC6970217.1"
                     /translation="MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE"
     gene            complement(5009..6229)
                     /gene="lysA"
                     /locus_tag="ACFOCN_001059"
     CDS             complement(5009..6229)
                     /gene="lysA"
                     /locus_tag="ACFOCN_001059"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HFC6970218.1"
                     /translation="MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAALN
                     PLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAE
                     IEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKA
                     NKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA
                     EGIVLEHLDLGGGVGIVYQDEDVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGS
                     LLTRVEFVKYGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVETKDIEPLTANIVGPIC
                     ETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNVRNRAAEVLVDGGGYRLIRRR
                     ETLEQQMANELACL"
     gene            complement(6240..6410)
                     /locus_tag="ACFOCN_001060"
     CDS             complement(6240..6410)
                     /locus_tag="ACFOCN_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6970219.1"
                     /translation="MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQL
                     QSKPQSAPQTQK"
     gene            6481..6804
                     /gene="cyaY"
                     /locus_tag="ACFOCN_001061"
     CDS             6481..6804
                     /gene="cyaY"
                     /locus_tag="ACFOCN_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HFC6970220.1"
                     /translation="MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAEN
                     GTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDGRDFYDVLNEALSAASGEAV
                     EIEEL"
     gene            6835..7254
                     /locus_tag="ACFOCN_001062"
     CDS             6835..7254
                     /locus_tag="ACFOCN_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HFC6970221.1"
                     /translation="MAQLPLYRTAEIGNFTVGTPKVLESFSKHIPYGVVFEDDGDTGY
                     FYAASQDGILDALHIYNVEDVSDKHIPNHVLILWDDACTIAALCVNDYIHAVYDFVEQ
                     AGYCRNGFPEAGGEWVKVENRVLDDELLDKILSREPT"
     gene            7276..7782
                     /gene="luxS"
                     /locus_tag="ACFOCN_001063"
     CDS             7276..7782
                     /gene="luxS"
                     /locus_tag="ACFOCN_001063"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HFC6970222.1"
                     /translation="MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPN
                     KEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVAD
                     AWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
                     LDEGLLNA"
     gene            7928..10720
                     /gene="polA"
                     /locus_tag="ACFOCN_001064"
     CDS             7928..10720
                     /gene="polA"
                     /locus_tag="ACFOCN_001064"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HFC6970223.1"
                     /translation="MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNM
                     LRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTG
                     WPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLD
                     IEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAS
                     EIKGKVGENLRAALPRLPLSYDLVTIKTDVDLHAELSDGIESLRRTAPKWAQLVVDFK
                     RWGFRTWLKEAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEKQAEKATAPERLDYQA
                     VTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLT
                     AAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYI
                     IESHLGHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALR
                     LEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE
                     QQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL
                     PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPI
                     RTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAA
                     EVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPG
                     VAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDL
                     IKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDV
                     PLVAEVGVGENWEEAH"
BASE COUNT         2449 a         2874 c         2888 g         2582 t
ORIGIN      
        1 cggaaaggtt gctgtttttc cgataaattc ctgccgctct tcgtttttgg aatggcggga
       61 aataaaacaa aagcgcgcgt atcaaaaaac aaaaatgcaa agaacggcgt tggcaatttt
      121 aaggtttgcg ccttagccgc acttattcgc aaaaaaaaac cgcacggcgt tgaccgtgcg
      181 gcttgttgtc tgaaggcttc agacggcatt gcttacatca tgccgcccat accacccatg
      241 ccgcccatat caggcacagc cggtttgtct tcggggattt cagcgatcat gcaatcagtg
      301 gtcagcatca agccggcgat agatgcggcg tgttgcagcg cggaacgggt tactttggcg
      361 gggtcgagta cgcccatttc gatcatgtcg ccgtattcgc cgctgccagc gttgtaaccg
      421 tagttgcctt tgccttccaa tactttgttc acaaccacgc tgggttcgcc gcctgcgttg
      481 gcaacgattt ggcgcagcgg agactcaacg gcgcgcaaga cgatttgtac gcctgcgtct
      541 tggtcggcat tgccggtgtg caggttttcc aaagcagcac gggcacgcaa cagggctacg
      601 ccgccgcctg caaccacgcc ttcttcaacg gctgcgcggg tagcgtgcag cgcgtcttcc
      661 acgcggtctt ttttctcttt catttcgact tcggtcgcgg caccgacttt gatgactgcc
      721 acgccgcctg ccaatttagc cacgcgctct tgcagttttt ctttgtcgta atcgctggtt
      781 gcggtttcga tttgttggcg gatttcggca acacgcgctt cgatttgggc tgcgtcgcca
      841 aagccgtcga tgatggtggt gttttcttta ccgatttcga tgcgtttggc ttgacccaag
      901 tcgtccaaag tcgctttttc caaagacaga ccgacttctt cggaaatcac cacgccgccg
      961 gtcaggatgg cgatgtcttg caacatcgct ttgcggcggt cgccgaagcc aggggctttg
     1021 acggcaacgg ttttcaggat gcctcggatg ttgttcacga ccaaagtcgc caaggcttcg
     1081 ccttctacgt cttcagcgat aatcaacagc ggacggctgg ctttcgccac ttgttccaaa
     1141 acaggcagca agtcgcggat gttgctgatt tttttgtcga acaacaatac aaacggattg
     1201 tccaaagcag cgatttgttt ttcagcgtcg ttgatgaagt aaggagacaa gtagccgcgg
     1261 tcgaactgca taccttcaac cacgtccagc tcgttttcca aagatttgcc gtcttcaacg
     1321 gtaatcacgc cttctttgcc gactttttcc atcgcttcgg cgataatcgc gccgacttgt
     1381 tcgtcagagt tggcggaaat cgagccgact tgggcgattt ctttggaagt gtcgcaaggt
     1441 ttggcgatgt tttttagctc ttcaaccaaa gcggcaacgg ctttgtcgat accgcgtttc
     1501 aggtcggtcg ggttcatacc ggcggtaacg tatttcatac cttcggcaac gatggattgc
     1561 gccaatacgg tggcggtagt cgtaccgtcg cctgccacgt cgttggtttt ggacgcgact
     1621 tctttcacca tttgcgcgcc catattttca aacttgtctt tcagttcgat ttctttggcg
     1681 acggttacgc cgtctttggt gatgtgcggg ccgccgaaag cgcggtcaac gactacgttg
     1741 cggcctttgg ggcccaaggt tacgcgcacg gcgtttgcca aaatgttcac gccgtttacc
     1801 attttttggc ggacttcatt gccgaactgt acgtcttttg ctgccatttc aattctccaa
     1861 aaatcattaa aactgtctga taaaaccgtt tatgccgtct gaaggcggtt tgccgtttca
     1921 gacggcatcg tgtccgtatt tatttttcaa cgatgccgaa aatatcttct tcacgcatta
     1981 ccaacagctc ttcgccgtcg gctttgacgg tttggccgct gtatttgccg aaaatgattt
     2041 tgtcgccgac tttgacatcc agcggacggc gcgcgccgtc tttgccgatt ttgcccgcgc
     2101 ccacggcgat gacttcgccc atatcgggtt tttcggcggc cgcacccggc aaaacgatgc
     2161 ccgatgcggt tttctcttca gcttccaagc gtttgacgac aacgcggtcg tgtaaaggac
     2221 ggatggtcat atttatgctc cgataaaatg atttgaaaac aatcatctgc ccgaacggtt
     2281 cggacagatt gaagtggaaa ccgggctgcc gcctgccggc ccgcccgtat aagtcggcaa
     2341 aattagggtg tgtgcgggca aattcaagtg aggcggaaaa aatttatttc cgccgttttt
     2401 tatagtggac taaatttaag gggctgtact agattagcag atatgttacc ctcgaaatat
     2461 gaagataacg cactgcaaat taaagaaaaa agtacagaaa gaactgctcc gtttttttgt
     2521 actggaagtt accgcccgtt ctgccgccga tattttgggt atccatccca attcggcagt
     2581 actgttctac cgtaaaatcc gcacggttat caaccatcat ttggccttgg ctgccgatga
     2641 ggtttttgag ggccctgtcg agccggacga aagcgatttc ggcggacggc gtaaaggcag
     2701 acgtggtcgc ggtgcggcag gaaaagtggt tgtcttcggc attctgaaac gcaacggacg
     2761 ggtctatacc gttgtggtgg ataatgccaa gtctgaaacg ttactccctg tcatcaagaa
     2821 gaaaatcatg ccggacagca ttgtttatac cgatagtctg agcagctgcg acaagttgga
     2881 cgtgagcggt tttatccatt accgcatcaa ccattccaag gagtttgcag accgtcagaa
     2941 ccacattaac ggcattgaga acttttggaa tcaggcaaaa cgcgtcttgc gaaaatacaa
     3001 cggaatcgat cgtaaatctt tcccgctgtt cttgaaagaa tgcgaatttc gatttaactt
     3061 cggcacaccg tctcaacagc ttaaaatcct gcgggattgg tgtgggattt agggctaatc
     3121 tagtacagcc cctaaaattt ttcgttttca agccttcacc gcttgccatc agcgttaaat
     3181 ttttttacga taagcacata gattgtaaac aatcggccac aagccggttt gttttttcag
     3241 aagacattat ccctgtcaga cgctatttct atatatttcg cctataatgg cttgttttta
     3301 ataaataatt caagaggtat caacgtgtct gattccaaga cgaaagaacg cgccacattc
     3361 cgcacgcgcc gcgcgtttat gattgccgcc atcgggtccg ccgtcggctt gggcaatatt
     3421 tggcgtttcc cctatattgc ttttgaaaac ggcggcggcg cgttcatcct gccctatctg
     3481 gtcgcgcttc tgacggcggg catcccgctg ctgctgctcg attatgccat cggccaccgt
     3541 taccgtggtt ctgcgccctt ggctttccgc cgcctcggac gatggtttga gccggtcggc
     3601 tggtggaacg tgatgaccaa tatcgtcatc tgcatctatt acgcggtaat tatcggttgg
     3661 gcggcaagct atacctatta ttcggtcaac gccgcctggg gtgcggatcc gcagggtttt
     3721 ttctttaagg acttcctgca aatggcgggc ccggaagcct tgggtttgga ttttgtcggc
     3781 aaagtcgccg gtcctttggc gggcgtgtgg gtttttaccg ccgccattat ggcgttgggc
     3841 gtgcaaaagg gcgtggcgcg cgcctcgtcg ttctttatgc cgctgctttt ggtgatgttt
     3901 ttgattatgg tcggcatttc actaaccctg ccgggtgcgg caaagggctt ggacgcattg
     3961 tttacgcccg actggtcgaa actcgccgat tccaaggtct gggtggcggc atacgggcag
     4021 attttctttt cgctttccat ctgcttcggc attatggtta cctattcttc ttatttgaag
     4081 aaaaaaaccg acttgggcgg aacggggctg gtggtcggtt ttgccaacag cagctttgaa
     4141 ctgctcgcgg gcatcggcgt gtttgccgca ttgggcttta tggcgcaggc gggcggcaag
     4201 gcggtcaacg aggttgcctc aggcggcatc ggtttggcgt ttatcgcctt tccgaccatt
     4261 atcaaccagg caccgatggg ctggctgatc ggcatattgt ttttcggttc gctggtattc
     4321 gccggcgtta cgtcgatgat ttccatcctt gaagtgattg tggcggcgat tcaggacaag
     4381 ctgaacatcg ggcgcgtcaa cgccacgctg ctggtctgca ttccgatggg cattgtttcc
     4441 acgctgctgt tcggtacggc gacggggctg ccggttttgg acgtgatgga caaattcgtc
     4501 aacacctacg gcattgttgc cgccggcttt gtttatgttg ccgccatcat cattagcggc
     4561 aggctgccgg aattacgcaa gcacctgaac gctttgtcct ccatccgcat cggcggcttg
     4621 tggacggtct gcgtcgtggt taccgtcgtg atgctcggct atatgctgtt taaagatacc
     4681 agcggcctga tggagaaaaa ttacgaaggt tatccggatg gtttcctcag tattttcggc
     4741 tgggggatgt cggcggcgtt ggtcgtgttc gggctgctgc tgtcgttgct gccttggaaa
     4801 cacggtcagg atttcaacgt caaagacgaa cacgaacatg aacaaggaga agaaaaatga
     4861 gtacttccgc cattgtgatg atgattgtct caatcgtgat aatctgggga gggctgctgc
     4921 tttccctgtt aaggctgccg aacgagtaag cctttagagc gttaaaaatg ccgtctgaac
     4981 tgtttcagac ggcattttga tgttcggctt acaggcaggc gagttcgttt gccatttgct
     5041 gttccaaggt ttcgcgccgg cggatgagcc ggtatccgcc gccgtcaacc aatacctccg
     5101 ccgcacggtt gcgcacgttg taattgctcg ccatactggc tccgtatgcg cccgcgctac
     5161 ggataagcag caaatcccct tcttcgcagg cgatggtgcg gtctttgccg agaaagtcgc
     5221 cggtttcgca aatcggaccg acgatgttgg cggtcagagg ctcaatatct ttggtttcga
     5281 ccgcctcgat gtgatgatag gcatcataaa gcgccgggcg catcaaatcg ttcatcgccg
     5341 catcgaccat cacaaagttt ttctcttcgc cgtatttgac gaattcgacg cgtgtcagca
     5401 gcgaacctgc gttgccgacc aagctgcggc cgggctcaag aatgagtttc agacggcgtg
     5461 tgccgatcag tttttgaacg gcttgggcat acgcgcccaa atcaggcaca tcttcgtctt
     5521 ggtaaacaat gccgacgccg ccgcccaagt ccaagtgttc caacacaatg ccttcggcgg
     5581 caagcgcgtc aaccaaaatc aaaatgcgct cgcaggcttc gaccagcggg cttaagtcgg
     5641 ttagttggga gccgatgtgg cagtcgatgc cgatgatttt caaattgggc tgttgtgcgg
     5701 cgtggcggta ggcttcgagc gcgtcggcat aagcaatgcc gaatttgttg gctttcagac
     5761 ctgtggagat gtagggatgg gttttcgcat cgacatcggg attgacgcgc agggagacgg
     5821 acgcggtttt gcctaaacgc gcggcaactt tttgaatacg gtcgatttcg ggaatgcttt
     5881 ccatattgaa gcatttcacg ccggcattca gcgcgaactc gatttctgcc tcgcttttgc
     5941 ccacgcctga aaatatggtt tttgccgcat cgccgcctgc cgccaaaacg cgtgccaatt
     6001 cgccgccgga cacaatgtcg aaaccgctgc ccagcgaggc gaagtgtttg ataatgctca
     6061 gattgccgtt tgccttgacg gcgtaacaga cgagcgggtt caaagcggca aacgcggttt
     6121 ggtagtgttc aaatgcttcg gtcagcgcgg attggctgta cacataaagc ggtgtgccga
     6181 atgcttcggc aaggcggggg taagggactt gttcgcaaaa tagggtcatg ttttcgtttt
     6241 catttttggg tttgtggagc ggattgcggt ttgctttgaa gctgcaaacc ggtttggatt
     6301 acgccgaaac gcgccttgtc gccttctttg ggcaggtaga ggtcgccttt gtaaccgcag
     6361 gccgagagca ggagggcggt tgccgccgca aaaaatacgc cgtatttcat cggtaaactt
     6421 ccttcataag cgcgaatgtg gcaagattcg gcatcttaaa caaaaaacac gcaaaaagct
     6481 atgatgaccg aaagcgagtt tatccgcgcg agcgaagcat tatttgaaca catcgaagac
     6541 caaatcgacg aaaacggctg ggatttcgac tgccggtttg ccggaaacgt cctgaccatc
     6601 gaagccgaaa acggcacgca aatcatcgtc aaccgccaca cgcccaacca agaattatgg
     6661 attgccgcca aaagcggtgg ctaccatttc gccgaacaaa acggcaaatg gctggcaacg
     6721 cgcgacggac gggattttta cgacgtttta aacgaagccc tgagcgcggc ttcgggcgaa
     6781 gcggtagaga ttgaggaatt gtgattcaat ttgatataaa aagattgtta cccaatggca
     6841 caattacctc tatatcggac tgccgaaatc ggaaatttta ctgtcggcac gcctaaagtt
     6901 ttagaatcat tttccaaaca tatcccttat ggtgtcgtct ttgaagacga cggcgacacg
     6961 ggctacttct atgctgcttc gcaagacggg attttagatg ccttgcacat ctacaatgtc
     7021 gaagatgtat ccgacaaaca tatccccaat catgtcttga ttttatggga tgatgcctgc
     7081 accatagccg cattgtgtgt caacgactac attcatgccg tctatgattt tgtcgaacag
     7141 gcaggatatt gccgcaacgg cttccctgaa gcaggcggcg aatgggtgaa agtcgaaaac
     7201 cgcgtcttgg atgatgaatt gctggacaaa atcctatccc gagaacctac ataaccctca
     7261 caaaaggata cccaaatgcc cctactagac agtttcaaag tcgatcacac ccgtatgcat
     7321 gcccccgccg tacgcgtggc gaaaaccatg accacgccca aaggcgacac cattaccgtg
     7381 ttcgacctgc gcttttgcat tcccaacaaa gaaatcctgc ctgaaaaagg catacacacg
     7441 ctggagcatt tgttcgcagg ttttatgcgc gaccacttga acggcaacgg cgtggaaatc
     7501 atcgacattt ccccgatggg ctgccgcacc ggtttctaca tgagccttat cggcacgcct
     7561 tccgaacagc aggtcgccga tgcatggctc gcctcgatgc aggatgtggg caatgtcaaa
     7621 gaccaaagca aaatccccga gttgaacgaa taccaatgcg gcacttatca aatgcactcg
     7681 ctcgccgaag cgcagcaaat cgcgcaaaac gtgttggcgc gcaaagtggc ggtgaacaaa
     7741 aacgaagagc tgacgctgga tgaagggctg ctgaacgcct aatccgccaa aaatgccgtc
     7801 tgaacaaggg tttcagacgg catttgcctt ttccgttata atccggggtt gtgcggggtc
     7861 gggttttaag ccggcatcgt ccttccctat ttttttctgt cccttatcgg ttttaagcgg
     7921 gttttttatg tccaacagac ctacactcct cctcgttgac ggctcgtcct acctctaccg
     7981 tgcgtatcac gcgatggggc aaaacctgac cgcccccgac ggcgcgccga cgggtgcgct
     8041 gtatggcgta ttgaatatgt tgcgccgttt gcggtcggaa tatccgcacg attattgcgc
     8101 ggtggttttt gatgcgaaag gcaaaaattt ccgccatcaa atgtttgaag aatacaaggc
     8161 gacgcgcccg ccgatgcccg acgatttgcg cccgcaggcg gaagcactgc cggatttagt
     8221 gcgcctgaca ggctggccgg tattggtgat tgggcaggtg gaggcggacg atgtgatcgg
     8281 cacgctggcg aaacaggggg cggaacatgg tttgcgagtc attgtttcga ccggcgataa
     8341 ggacatggcg cagttggtgg atgagcgcgt tacgctggtg aacacgatga gcggagaaac
     8401 gctggatatt gaaggcgtga aggcaaaatt cggcgtgcgc cccgaccaaa tccgcgatta
     8461 tctcgcgctg atgggcgaca aggtggacaa cgtgccgggc gtggaaaaat gtggcccgaa
     8521 aacggcagtg aagtggctgg aagcctacgg ctcgttgcaa ggcgtgatgg aacacgcttc
     8581 ggaaatcaag ggcaaagtgg gcgagaatct gcgtgccgcc ctgccgcgcc tgccgctgtc
     8641 gtatgatttg gtaacgatta aaaccgatgt ggacttgcac gccgagcttt cagacggcat
     8701 cgaaagcctg cgccgtaccg cgccgaaatg ggcgcaactg gttgtcgatt tcaaacgctg
     8761 gggcttccgc acctggctga aagaagcgga atcaaacatg aataccggct cgaccgatga
     8821 tgtgttcggc agcgacagca tcggtgagca ggcggctttg aatgcggaaa tgccgtctga
     8881 aaaacaagct gaaaaagcca ccgcccccga aaggctggat tatcaagccg ttaccaccga
     8941 agcgcagttt gccgctttgt tggacaaact gtcgcgggcg aacacaatcg gcatcgatac
     9001 ggaaaccacg tcattagacg cgatgaacgc ctcgctggtc ggcatcagca tcgctttcca
     9061 agcaggcgaa gcggtttaca tccccgtagg acacagcctg accgcagcgc ctgaacagct
     9121 tgatttacaa gacgtattag gccgtctgaa accgcatttg ggaaaccccg ccctaaaaaa
     9181 aatcgggcaa aacctcaaat acgaccaaca cgttttcgcc aactacggca tcgccctgaa
     9241 cggcattgcc ggcgacgcca tgctcgcttc ctacatcatc gagagccatc tcggacacgg
     9301 cttggacgaa ttgtccgaac gctggctcgg cttggaaacc attacctacg aatcgctgtg
     9361 cggcaaaggc gcgaagcaaa tcggttttgc cgatgtcgcc atcgggcagg cgaccgaata
     9421 cgccgcccaa gacgccgatt tcgccctgcg cctcgaagcg cacctgcgcg cgcaaatgga
     9481 cgaaaaacag cttgaaatgt atgaaaaaat ggagctgccc gtcgcgcagg tattgtttga
     9541 aatggaacgc aacggcgtgc aaatcgaccg cgccgaactc gcccgccaaa gcgcggaact
     9601 cggcgccgag ctgatgaagc tcgaacaaca agcctatgcc gccgcagacc agccgttcaa
     9661 cctcaattcg cccaaacagc tgcaagaaat cctgttcgac aaaatgggca tccccaccaa
     9721 aggcctgaaa aaaaccgcca aaggcggcat ttccaccaac gaagccgtgc tcgaacagct
     9781 cgcgcccgac taccccctgc ctaaaatcat cctgcaaaac cgcagcctgg cgaagctcaa
     9841 atccacctac accgacaaac tacccgaaat gatttccccc aaggacggcc gcgtgcatac
     9901 cacctacgcc caagccgtcg ccattaccgg ccgcctcgcc agcaacaacc ccaacctgca
     9961 aaacatcccc atccgcaccg ccgaaggccg ccgcgtgcgc cgcgccttta ccgcaccgca
    10021 aggcagcgtc atcgtttccg ccgactattc ccaaatcgag ctgcgcatta tggcgcacct
    10081 ctccggcgac aaaaccctga ttgccgcgtt ccaaaacggc gaagacgtac accgccgcac
    10141 cgccgccgaa gtgttcggca ctgcgcccga aaacgtctcg tccgagcaac gccgctacgc
    10201 caaaaccatc aacttcggct taatttacgg tatggggcaa tacggtttgg caaaatcatt
    10261 gggcatcgac aacctttccg ccaaaaactt tatcgaccgc tacttcgccc gctaccccgg
    10321 cgtcgccgaa tacatgcagc gcaccaaaga acaagccgcc gcccaaggct acgtcgaaac
    10381 cctgttcggc agaaggctct atttgcccga catccgcaac aaaaacgcca acgcccgcgc
    10441 aggagccgag cgcgccgcca tcaatgcccc catgcaaggc accgcgtccg acctcatcaa
    10501 acgcgccatg atagacgtgc gaaactgtct ttcagacggc atcggcagca aactggtcat
    10561 gcaggtgcat gacgaactgg tgctggaagt cgttgaaacc gaactggatt ttgtcaaaga
    10621 aaaactgccg cagattatgg cgaaagtgga cggcggatta ttggatgtac cgctggtggc
    10681 tgaggttggc gtaggggaga attgggaaga ggcacattga ttgaaaggtg ttatatgcta
    10741 tctttattta aataaaattt aatttttggt atattttttc taaatgttcc tat
//
LOCUS       DAXIFD010000060        10790 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.060, whole genome shotgun sequence.
ACCESSION   DAXIFD010000060 DAXIFD010000000
VERSION     DAXIFD010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10790
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.060"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            154..1038
                     /locus_tag="ACFOCN_001065"
     CDS             154..1038
                     /locus_tag="ACFOCN_001065"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HFC6970224.1"
                     /translation="MSSGNIHIHSMTGFANAAAECGSKRINLDLRAVNHRFLDIQIRM
                     PDDLRYLESGIREKISSHIARGKVECKIQIQDAENGSQSLELNRDLVGQLAEINKDLR
                     KHHDLAKLGVADILRFPGVLASQRENTEELAKSITELTEKALKDFTAARKREGKKLGE
                     HLLQRLEAMEEIIDALSELFPTLLETHKEKIRARLVEAVGSIDNDRLQQEFALFIQKS
                     DIDEEFSRLRTHIAEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIATECTQAS
                     VELKVLIEQMREQVQNIE"
     gene            complement(1122..1637)
                     /locus_tag="ACFOCN_001066"
     CDS             complement(1122..1637)
                     /locus_tag="ACFOCN_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6970225.1"
                     /translation="MMILKTAPLKRRFAAMLYEMLLVGAATCLAALFAGIAAIFLNPV
                     SIAVSALVTSILIMGSWWLYFRANWHGQGQTLAMRTWKIGLCDLNGIQPSLYLLRLRF
                     IWACIFIVFIPMLAYAGLRHFLGIPPKGAAGAALIWLILPWGFALLNPDRQFLYDFLA
                     GTRLVAVKGKP"
     gene            complement(1713..2132)
                     /locus_tag="ACFOCN_001067"
     CDS             complement(1713..2132)
                     /locus_tag="ACFOCN_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970226.1"
                     /translation="MDNKTKLRLGGLILLTTAVLSLIIVLIVDSWPLAILLAAIIVAA
                     AAGGFVWTSRRQQRQFIERLKKFDIDPEKGRINEANLRRMYHSGGQHQKDAITLICLS
                     QKCSVDEAHAMFKKRPTRQEINQMVAKQSRGQKRPHR"
     gene            complement(2253..3251)
                     /gene="holA"
                     /locus_tag="ACFOCN_001068"
     CDS             complement(2253..3251)
                     /gene="holA"
                     /locus_tag="ACFOCN_001068"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HFC6970227.1"
                     /translation="MAAHIGRIDTDAPLKPLYVIHGEEELLRIEALDALRAAAKKQGY
                     LNREVYTADNAFDWNELLQTAGSAGLFADLKLLELHIPNGKPSKTGGEALQDFAARLP
                     EDTVTLVLLPKLEKTQLQSKWFAALAAKGEVWEAKPVGAAALPQWIRGRLDKIGLGIG
                     ADALALFAERVEGNLLAARQEIDKLALLYPKGHTVNIDEAQTAVANVARFDAFQLAGA
                     WMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDVRTLIRLAAALKQGQSIQSVRNSLR
                     LWGDKQTLAPLAVKRISVVRLLDALKTCAQIDRIIKGAEEGDAWTVFKRLVVSLAE"
     gene            complement(3253..3732)
                     /gene="lptE"
                     /locus_tag="ACFOCN_001069"
     CDS             complement(3253..3732)
                     /gene="lptE"
                     /locus_tag="ACFOCN_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HFC6970228.1"
                     /translation="MNKLFLTAAVLMLGACGFHLKGADGISPPLTYRSWHIEGGQALQ
                     FPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLILTVEAQVL
                     KRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAE"
     gene            complement(3784..4563)
                     /gene="pgeF"
                     /locus_tag="ACFOCN_001070"
     CDS             complement(3784..4563)
                     /gene="pgeF"
                     /locus_tag="ACFOCN_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HFC6970229.1"
                     /translation="MKTITETLNLAPKGKNFLTADWPAPANVKTLITTRNGGVSQGAY
                     QSLNLGTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTIVVNAAEALDGTPDADAS
                     VDDTGKVACAVMTADCLPVLFCDRAGTTVAAAHAGWRGLAGGVLQNTIAAMKVPPVEM
                     MAYLGPAISADAFEVGQDVFDAFCTPMPEAAAAFEGIGGGKFLADLYALARLILKREG
                     VGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDGNAV"
     gene            5170..6117
                     /locus_tag="ACFOCN_001071"
     CDS             5170..6117
                     /locus_tag="ACFOCN_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6970230.1"
                     /translation="MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLL
                     GIIMFGMGLTLKPSDFDILFKHPKAVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGV
                     ILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
                     GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI
                     MESGLLIFAVVALHNGIGYLLGFFAAKWTGLPYDAQKTLAIEVGMQNSGLAAALAAAH
                     FAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP"
     gene            complement(6269..7393)
                     /gene="rluD"
                     /locus_tag="ACFOCN_001072"
     CDS             complement(6269..7393)
                     /gene="rluD"
                     /locus_tag="ACFOCN_001072"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HFC6970231.1"
                     /translation="MQNTSFDNESDYSDDSDFASASETENRIGLTVPLELAGGRLDAV
                     LAKLLPDYSRSRLTLWIKEGAVIVNDKPSQPKDKMIGGEQIRVTVRPSEENLAFVPEP
                     MALDIVYEDDTVIVVNKPAGLVVHPAAGNWRGTLLNGLLAHCPELSQVPRAGIVHRLD
                     KETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRL
                     KMAVVKFGGKPAVTHVKVLERYLTHSYIECSLETGRTHQIRVHMREANHPLAGDPVYG
                     NPRHPCSDPVKEAVKSLGSRQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLRL
                     EAGLDSSLSNEEEWQDKFGADDDDDWNEDDYDVEVVYVRE"
     gene            7392..8195
                     /locus_tag="ACFOCN_001073"
     CDS             7392..8195
                     /locus_tag="ACFOCN_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HFC6970232.1"
                     /translation="MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQD
                     ELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLH
                     PQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
                     KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESL
                     AILELAYQKLGKPQLAADTRRVLETNFPKSPFLTHAWQPDDMPWWRYWH"
     gene            complement(8253..10472)
                     /locus_tag="ACFOCN_001074"
     CDS             complement(8253..10472)
                     /locus_tag="ACFOCN_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0009290 - DNA import into cell involved in
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HFC6970233.1"
                     /translation="MFRRWFLPCWVVGAAASFALPVVPHWLFWLAAFAVFAVFARRFA
                     FAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVPLTVEVADMPRSDGRRVQFAAKA
                     VDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
                     GTVGADRVLLHGGSGWGIAVWRSRISRNWQQADADGGLSDGIGLMRALSVGEQSALRP
                     ELWQAFRPLGLTHLVSISGLHVTMVAVMFAWLAKRLLACSPRLPARPRAWVLAAGCAG
                     ALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALAAVLLFDPSAVLGVG
                     TWLSFGLVAALIWACSGRLHEGKRQTAVRGQWAASVLSLVLLGYLFASLPLISPLVNA
                     VAIPWFSWVLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVAAAPLP
                     LLVLAVCAALLLLLPRGLGLRPWAVLLLAGFVFYRSPGVPENEVAVTVWDAGQGLSVS
                     VQTANHHLLFDTGTAAAAQMGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQAVGKIPN
                     GGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLMPSERKNIDDNGKSCVLRVVAGGAAL
                     LVTGDLDTKGEESLVGKYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYA
                     NAYKHPTEAVQNRIRAHGIKLLRTDLSGALQFGLGRGGVKAQRLRGYKFYWQKKPFE"
BASE COUNT         2571 a         3224 c         2706 g         2289 t
ORIGIN      
        1 gttaatccac tatacatttc ccttccttgc agcaacaaaa gcgcgtgatt ccaatctgcc
       61 gctgcaaaat cttcaatttt tcacacccga aaacgcttgc cgccatacag atgtgatata
      121 ttgattccat tttaacgggc ttcggagaac gacatgagca gcggaaatat ccacatccac
      181 agcatgaccg gatttgccaa cgcggcggca gagtgcggca gcaaacgcat caatctcgac
      241 ctgcgtgcgg tcaaccaccg ttttctagat attcaaatca ggatgcccga cgatttgcgc
      301 tatttggaaa gcggtatccg cgagaaaatt tcatcccata tcgcacgcgg caaagtcgaa
      361 tgcaaaatcc aaattcaaga tgcggaaaac ggcagtcagt ccttggaact gaatcgcgac
      421 ttggtcggac agcttgccga aatcaacaaa gacctccgca agcatcacga tttggcaaaa
      481 ctgggcgttg ccgacatcct gcgtttcccc ggcgtattgg caagccaaag ggaaaatacg
      541 gaagaattgg caaaaagcat taccgaactg accgaaaaag cgttaaaaga ctttactgcc
      601 gcacgcaagc gggaaggtaa gaaattaggc gagcacctgc tgcaacgcct tgaggctatg
      661 gaagaaatca tagatgcatt aagcgaactc tttcctaccc tgttggaaac acataaagaa
      721 aaaatccgcg cccgcctcgt cgaagcggtc ggcagcatcg acaacgaccg cctgcaacag
      781 gaatttgccc tctttatcca aaaatccgac atcgacgaag agttcagccg cctacgcacc
      841 cacattgccg aagtgcgccg tatcgttacc gaacacaaag gcagcagcgg caaacggctg
      901 gacttcctga tgcaggaatt aaaccgcgaa gccaacactt tgggcagcaa atccatcgct
      961 accgaatgca cccaagcctc ggtcgagctg aaagtcctga tcgaacagat gcgcgaacaa
     1021 gtgcagaata tcgaataatc ggtttccccg ataagcaaat gccgtctgaa agccctttca
     1081 gacggcattt tttcagtttg aaacctttgc ggtataaagg cttaaggctt tcctttgacc
     1141 gccaccaatc ttgttcctgc aagaaaatca tacagaaact gccggtcggg attcagcagt
     1201 gcgaaccccc acggtaaaat cagccaaatc aatgccgcgc cggccgcgcc cttgggcgga
     1261 atgccgagga agtggcgcaa tccggcataa gcaagcatag gaatgaagac gatgaatatg
     1321 cacgcccaaa taaagcgcag gcgcaacagg tacaaagacg gctgtatgcc gttaaggtcg
     1381 cacaagccga ttttccatgt cctcatcgcc aaggtctgcc cctgaccgtg ccagttggcg
     1441 cgaaaataaa gccaccatga tcccattatc aggatactcg ttaccaatgc agaaaccgcg
     1501 atagaaacgg gattcagaaa aatggcggca ataccggcaa acaatgctgc caaacaggtt
     1561 gccgcaccga ccagcagcat ctcatacagc atggcggcaa agcggcgttt gagcggggcg
     1621 gttttcagta tcatcatctt ttcaatcaga atatgccgtc tgaaacgcca acaggcttca
     1681 gacggcattt atgcaaagat gccttgcggc ggttaacggt gcggacgttt ctgaccgcgc
     1741 gactgttttg ccaccatttg attgatttcc tgacgtgtcg ggcgtttttt gaacatagcg
     1801 tgcgcctcgt ccaccgaaca tttttgcgac aggcagatca gggtaatcgc atctttctgg
     1861 tgttgtccgc cgctgtggta catacggcgc aggtttgcct cgttgattct gcctttttcg
     1921 ggatcgatgt cgaatttttt caggcgttcg ataaactggc gttgctgtcg gcgggatgtc
     1981 caaacaaaac cgcccgcagc ggcggcgacg atgatggcgg caagcaggat ggcaagcggc
     2041 caggaatcga caatcaatac gataatgagg cttaaaacgg cggtggtcag taaaatcagg
     2101 ccgcccaagc gcagtttggt cttattgtcc atagggttaa tgttccttta ttgaggtggt
     2161 cgtgccgtct gaaatgtttt cggacggatt ggtgaatact tttcaggatt aacggtattt
     2221 tacagtattt tcggattttg gggattaccg ctttattccg ccagcgacac gacaagccgt
     2281 ttgaataccg tccatgcgtc gccctcttcc gcgcctttga tgattcggtc gatttgggca
     2341 caggttttga gcgcgtcaag caggcggacg acggaaatcc gcttgactgc aagcggtgcg
     2401 agcgtctgct tgtcgcccca aagcctaagg ctgttgcgga cggattggat gctctgcccc
     2461 tgcttcaggg cggcagcaag ccggatcagc gtccgcacgt cttcggcaac cgcccacagc
     2521 aacagcaccg gttcttcgcc ctcttcccgc aatccgtcca aaagcctgca tacgcgcagg
     2581 acatcgccct tcatccacgc gcctgccagt tggaacgcgt cgaagcgggc gacgttggca
     2641 acggcggttt gcgcctcatc gatattgacg gtatgccctt tcggatacag cagcgcgagc
     2701 ttgtcgattt cctgacgtgc cgccaacaga ttgccttcca cgcgctcggc aaacagtgcc
     2761 aatgcgtctg ccccgatacc caaaccgatt ttgtccagcc gtccgcgtat ccattggggc
     2821 aaagccgccg cgccgaccgg tttggcttcc cacacttccc cctttgccgc caatgcggca
     2881 aaccatttgg actggagctg ggttttctcc agtttgggca gtaaaaccag cgttaccgta
     2941 tcttccggca ggcgggcggc aaaatcctgc aacgcctcgc cgccggtttt gctgggcttg
     3001 ccgttaggga tatgcagttc caacagcttc aaatcggcaa acagacccgc actgcctgcg
     3061 gtttgcagca gctcgttcca atcgaaagca ttgtctgccg tataaacttc ccgattaagg
     3121 taaccttgtt tcttcgccgc cgccctcaat gcgtccaatg cctcgatacg caacagttct
     3181 tcctcgccgt ggatgacgta caggggtttc aaaggcgcgt ccgtatcaat gcgtccgata
     3241 tgtgccgcca cgtcattccg ccttcagaaa ggtcaggcgg cggacaatct gttcggcggc
     3301 atcctgccgc atttccgccc acaatgccgc ttcctcttcc tgtttgccca agatctcgtt
     3361 gtcggcataa gcaaggacgc ggcggacgga cacggtcatc ggtttgccga ccggctcgcc
     3421 gcgtttcaat acctgcgctt caaccgtcaa tatcaaaaga tattcgttga tgactgccgc
     3481 acgggtaacg gtgtaggttt ccttgttttg ggaaacgctg tctatacgca gggtcatctg
     3541 cgcgccggca gcatcgtcca ccctgcccga agcctgatac agcgcggttt ccaaaggaaa
     3601 ctgcaatgcc tgtccgcctt cgatgtgcca gctccggtag gtcagcggcg gagaaatgcc
     3661 gtctgcacct ttcaggtgga aaccgcacgc gcccagcatc agcactgcgg cagtaagaaa
     3721 cagtttgttc atggcttgcc tttctcaaaa gcacaaagtc ggtagattat atcagcggcg
     3781 tgttcagacg gcattgccgt ccagccaaat caggctcgcc atacgccctg tcgctccgtc
     3841 gcggcggtag gaaaagaaag tatcccgttc caaaaccgta caatgcgtgc cgccgtacac
     3901 gccgcccacg ccttcgcgct tcagaatcag gcgggcgagc gcgtaaaggt cggcaaggaa
     3961 tttgccgccg cctatgcctt caaatgcggc ggcggcttcg ggcatgggcg tgcagaacgc
     4021 atcaaacacg tcctgtccga cttcaaacgc atccgcactg atggcggggc cgagatacgc
     4081 catcatttcg acaggcggaa ccttcatcgc tgcaatggtg ttttgcaata cgccgcccgc
     4141 caaaccgcgc cagcccgcgt gtgcggcggc aaccgtcgta cccgccctgt cgcaaaacaa
     4201 aacaggcagg cagtctgcgg tcatcacggc acaggcaacc ttgcccgtgt cgtccacgga
     4261 agcgtccgca tcgggcgtgc cgtccaatgc ttcggcagca ttgacgacaa tggtgctgtg
     4321 gatttgattg aggtaggcaa cgggcaatcc gacctgctgt tgcacgattt cgcggttgcg
     4381 gcgcacggct tcgggattgt cgccgacgtg cgtaccgagg ttcaaactct gatacgcacc
     4441 ttggctcacg ccgccgttgc gcgtggtaat cagggttttc acattggcgg gcgcgggcca
     4501 atcggcggtc aggaagtttt tgcctttcgg ggcaagattt agggtttctg tgatggtttt
     4561 cattggatat tggaataggt gtgtggcgga aagggttgat taactgcctt cggggcaaat
     4621 ggatgtttgt tttttcgtca ttcccgcaca ggcgggaatt cggagattcg ggattgtttt
     4681 caaacgttcg ggttcggatt tttgcaggtg cgggaatgat gcccttatat accttctccg
     4741 agctttatat agtggattaa caaaaaccag tacggcattg tctcgcctta gctcaaagag
     4801 aacgattctc taaggtgctg aagcaccaag tgaatcggtt ccgtactatt tgtactgtct
     4861 acggcttcgt cgccttgtcc tgatttttgt taatccacta tatgtttcaa caggggatgg
     4921 cacatcaagc accgcactgc gtgttgcccg aacgagacta ccctccgatt agattctatc
     4981 gctataaaca gacgggtttc aaccgaaaag gaatggggat aaagtccatt tctgacacct
     5041 ctcgggcgat gccgtctgaa aaccaatctc cactttcaga cggcattgtt taggcacggt
     5101 cattttgcaa attaaggtta aggcgtgtat gcttgccttc ccttaaaaac aaacacgcaa
     5161 cgcattatta tgaatatcct cagtaaaatc agcagcttta tcggaaaaac attttccctc
     5221 tgggccgcgc tctttgccgc cgccgctttt ttcgcgcccg acaccttcaa atgggcgggg
     5281 ccttatattc cttggctgtt gggcattatt atgttcggta tgggtttgac gctcaaacct
     5341 tccgacttcg atattttgtt caaacatccc aaagccgtca tcatcggcgt aatcgcacaa
     5401 ttcgccatta tgccggcaac cgcctggctg ctgtccaaac tgttgaacct gcctgccgaa
     5461 atcgcggtcg gcgtgatttt ggtcggctgc tgcccgggcg gtacggcttc caatgtgatg
     5521 acctatctgg cgcgtggcaa tgtggctttg tcggttgccg ttacgtctgt ttccaccctg
     5581 atttccccat tgctgactcc cgccatcttc ctgatgcttg ccggtgaaat gctggaaatc
     5641 caagcggccg gtatgttgat gtccatcgtc aaaatggttt tgctccccat tgttttgggt
     5701 ttgattgtcc ataaggtttt gggcagtaaa accgaaaagc tgaccgatgc gctaccgctg
     5761 gtttccgttg ccgccatcgt gctgattatc ggcgcggttg tcggggcaag caaaggcaag
     5821 attatggaaa gcggcctgct gatttttgcc gttgtcgcac tccacaacgg catcggctac
     5881 ctgctcggct tctttgccgc caaatggacc ggcctgcctt atgatgcaca aaaaacgctg
     5941 gccatcgaag tcggtatgca aaactcgggg ctggccgccg cgcttgccgc cgcacacttt
     6001 gccgctgcgc cggtcgttgc cgttccgggc gcattgttca gcgtgtggca caatatctcc
     6061 ggctcgctgc tggcaactta ttgggcggcc aaagccggta aacataaaaa accctaaacg
     6121 cctttcatca taatgccgtc tgaacggggc aaacgaaacc ggcggtttct gcccgacccc
     6181 ttcagacgcc tttgtttgaa atcggcgggg acgattatcc ggctgctccg attcggctac
     6241 ctgcgttcgc cccgcctttc aagccacctc actccctcac ataaaccact tcgacatcgt
     6301 agtcgtcttc gttccaatcg tcatcgtcgt ccgcgccgaa tttgtcctgc cattcctctt
     6361 cattgctcaa agacgaatcc aaaccggctt caagacggag gacggacaac aaatgatata
     6421 tgtcgtccgg aatcggtgcc tcaaacgaaa cggtttcgcc gctttccgga tgggtgaaac
     6481 tcaagcggta ggcgtgcaat gcctgacgcg agcccaaact tttaacggct tctttcaccg
     6541 ggtcgctgca cggatggcgc gggttgccgt acacgggatc gccggcaagc ggatggttgg
     6601 cctcgcgcat atggacgcgg atttggtgcg tcctgcccgt ttcgagcgag cattcgatat
     6661 agctgtgggt aagatagcgt tccaacactt tgacgtgggt aacggctggt ttgccgccga
     6721 atttgacgac tgccattttc aggcggttgt gcggatcgcg tccgatttgg gtttcgattt
     6781 taccgtcgaa ggggacgatg ccgttggcga cggcgcggta gatgcgtttg accgtgcgct
     6841 cttgaagctg cctcacgagg gaattttgcg ccggcagggt tttggcaacc accatcagcc
     6901 cgctggtttc tttgtccaaa cggtgtacga tgcctgcacg cggtacttgg ctcaattcgg
     6961 gacagtgcgc caacaggccg ttgagcagcg tccccctcca gttgcctgcc gccggatgca
     7021 ccaccagtcc ggccggtttg ttgacgacaa tgacggtatc gtcttcgtaa acaatatcca
     7081 aagccatagg ctctggaaca aacgccagat tttcctcact cggacggacg gttacacgga
     7141 tttgctcacc gcctatcatt ttgtctttgg gttgcgaagg tttatcgttt acaataaccg
     7201 cgccctcttt aatccataat gtcaggcggc tgcgcgaata gtcgggcaga agtttcgcca
     7261 acaccgcatc caaccgcccg ccggcaagct cgagcggaac ggtcagaccg atacggtttt
     7321 cagtttcgga agctgacgca aagtctgaat cgtcgctata atcggattca ttatcaaagg
     7381 aagtattctg catgaaaaaa attcttttaa cggtttcatt aggtttggca ctgagtgcct
     7441 gtgccactca aggtacggtc gataaagatg cccagattac ccaagattgg agtgtggaga
     7501 agctctatgc cgaagcccag gacgaattga acagcagcaa ttatacgcgg gctgtcaagt
     7561 tatacgaaat cttggaatcg cgcttcccca ccagccgcca tgcccggcag tcgcaactgg
     7621 ataccgcata cgcctattat aaagacgatg aaaaagacaa agctctggcg gcaatcgaac
     7681 gcttccgccg ccttcacccg caacacccga atatggatta cgcgctatac ctgcgcggtt
     7741 tggtactgtt caacgaagat cagtctttct tgaacaagct ggcctcgcaa gactggtccg
     7801 accgcgaccc gaaagccaac cgcgaagcgt accaggcgtt tgcggaactc gtccaacgct
     7861 tccccaacag caaatacgcc gccgatgcga ccgcacgtat ggtcaaactg gtcgatgcac
     7921 tgggcggcaa tgaaatgtcg gtggcgcgct actacatgaa acgcggtgca tatatcgccg
     7981 ccgccaaccg cgcccaaaaa atcatcggca gctaccagaa tacgcgttat gtcgaagaat
     8041 cgctcgccat attggaactt gcctaccaaa aactcggcaa accacagctt gccgccgata
     8101 cgcgccgcgt gttggaaacc aacttcccga aaagcccgtt tttgacgcac gcttggcagc
     8161 ccgacgatat gccctggtgg cgttactggc attaagccca tcttcgtaat gccgtctgaa
     8221 gccgtttcag acggcatttt atgtttcaaa cctcattcaa acggtttttt ctgccaatag
     8281 aatttatacc ctctcaaacg ttgagccttc acgccgccgc gccccaagcc gaattgcagc
     8341 gcgcccgaca aatcggtacg caacaatttg atgccgtgtg cacggatacg gttttgcacc
     8401 gcttcggtcg gatgtttgta ggcgttggca taaccgcttg aagcaacggc atattcgggc
     8461 gagacggcat tgaggaacac gcccgacgag gacgtattgc tgccgtgatg tcccaaaacc
     8521 aaaacctggc tgtacaggtt gcctccatac ttgccgacca ggctttcctc gcccttcgta
     8581 tccaaatcgc ccgttaccag cagtgccgca ccgcccgcca caacacgcaa aacacaactt
     8641 ttcccattat catcgatgtt tttgcgttca gacggcatca aaaactcaaa atccacgccg
     8701 tcccattgcc aacgctgttc cgcacaatgc cgcgccccct cataaaattc cggctgcccg
     8761 gcataaatcc cgccgttcgg tatcttgccg actgcctgaa aaccgccgtc gtggtcgctg
     8821 tcgtgatgcg acagaaccag cttgtccaaa cggcggacac ccgccgcatt caaactcggc
     8881 acaatcccca tctgcgccgc cgctgccgtt ccggtgtcaa acaaaagatg atgatttgcc
     8941 gtctgaaccg acaccgacaa accctgcccc gcatcccaaa ccgtaaccgc aacctcattt
     9001 tccggcacgc cgggtgaacg gtaaaacaca aaccctgcca acagcaacac cgcccacgga
     9061 cgcaaaccca agccgcgcgg cagcagcaac agcaaagcgg cacacaccgc caacaccaac
     9121 agcggcaaag gtgcggcggc aacggcaaac tcgggcgaca catcggcaag ccacaccaaa
     9181 aaccgcaaag tatattccgc caaaaatgcc cccaactgtt gcaaaggcgc aaacggcacg
     9241 accgaaccca gcaacgccag cggcgtcaat acccaagaaa accacggaat cgccaccgca
     9301 ttgaccaaag ggctgattaa aggcagcgaa gcaaacagat aaccgagcaa aaccagcgac
     9361 aacaccgaag ccgcccactg cccgcgcacg gcggtttgcc gtttcccttc gtgcaaacgc
     9421 cccgaacacg cccatatcag ggccgccacc aaaccgaaag acagccaagt ccccacaccc
     9481 aagaccgccg acgggtcgaa cagcagcacc gccgccaacg cctgccacca cgtcgcccac
     9541 gccgacaatc ttcccctgcg ccaagcccac gcaaacgccg ccaacatcaa aacgctgcgc
     9601 tgcgtcggca cggaaaaacc ggcaagcagc gcgtaaaaca gcgcgcctgc acaccccgcc
     9661 gccaaaaccc acgcacgcgg ccgggcagga aggcgcgggg aacaggcaag cagccgcttc
     9721 gccagccacg caaacattac cgccaccatc gtaacgtgca aacccgaaat actgaccaaa
     9781 tgcgtcagcc ccaacggccg gaacgcctgc cacaattcgg ggcgcaatgc cgactgttcg
     9841 cccacgctca acgcgcgcat cagcccgatg ccgtctgaaa gcccgccgtc cgcatccgcc
     9901 tgctgccaat tacggctgat gcggctgcgc caaaccgcaa tcccccaacc gcttccgcca
     9961 tgcagcaaaa ccctgtccgc accgaccgtc cccgcgccgc ctatcccgtt ggataatgcc
    10021 cacgcctcac ggttcaaacc gcgcaggttc aattcgccga cgacggggtg cacacgtgcc
    10081 gttatccgcc atctgctccc gaccgcccat tcgcgccgtt tgtagtccga cagcagcaaa
    10141 tcaaacgtcc gaccaccgct gtccacagcc tttgccgcaa actgcacgcg ccgcccgtcc
    10201 gacctcggca tatccgccac ttccaccgtc aacggcacac ctgaaaccgc ctccgcccgc
    10261 cattgcgaag acagtgccgc ttccgttctg aatacgccgt aagccgcgcc cgccaacacg
    10321 cacagcatca gaccggcaaa cgcaaaacgc cttgcaaaca cagcaaaaac cgcaaaagcc
    10381 gccagccaaa acagccaatg cggcacgacc ggcagcgcaa acgaagccgc cgcgccgaca
    10441 acccaacacg gcaaaaacca acgacggaac acgtctcccc accccagata tttcaaaaat
    10501 aaacggataa taaagcaaat ccgaaaaacc gtcataacaa gatttgaaaa tgatatagtg
    10561 gtttaaattt aaatcaggac aaggcgacga agccgcagac agtacaagca gtacgacaag
    10621 gcgaggcaac gctgtactgg tttttgttaa accactataa gaatgcaaac gaaaagcctc
    10681 agtattatcc tagacaacgg caaactttcc atcgtcattc ccgcacaagc gggaatccaa
    10741 acttgtccgc acggaaactt atcggataaa acggtttctt agattccacg
//
LOCUS       DAXIFD010000061        10605 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.061, whole genome shotgun sequence.
ACCESSION   DAXIFD010000061 DAXIFD010000000
VERSION     DAXIFD010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10605
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.061"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..519
                     /locus_tag="ACFOCN_001075"
     CDS             <1..519
                     /locus_tag="ACFOCN_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6970234.1"
                     /translation="GTGSGVLAAILAKQGIPSVIGTDTNPKAVACARANIARLGFEKQ
                     VEIRETDLFPEGFADLIVCNPPWLPAKPTSAVESALYDPESAMLAAFLRDAPKHLNPD
                     GEIRLIISDLAEHLGLRPADFLEKAFIRAGLRVADMMKTKPKHKKAANPSDPLAFART
                     RETTFLYRLKKA"
     gene            complement(547..2292)
                     /gene="recD"
                     /locus_tag="ACFOCN_001076"
     CDS             complement(547..2292)
                     /gene="recD"
                     /locus_tag="ACFOCN_001076"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HFC6970235.1"
                     /translation="MERQTDEFAQAAARAVIWFLARYAGSSDEVLANCTERLFQALQN
                     GHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAA
                     DTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
                     LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLL
                     KLRPPKMQAAFNPVYPLPFDVLVIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLP
                     SVGIGDVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPLLAQNTAHLSFSHRFGD
                     NSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGN
                     IEAAYAGISDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYA
                     LELFNGDIGLIMEDVGRQGSLAAYFADADGFKKVAVSCLPDFEPAFAMTVHKSQGSEY
                     REVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAAATVKTR
                     QTALGSMLERVFSQE"
     gene            complement(2360..3055)
                     /gene="lolD"
                     /locus_tag="ACFOCN_001077"
     CDS             complement(2360..3055)
                     /gene="lolD"
                     /locus_tag="ACFOCN_001077"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HFC6970236.1"
                     /translation="MSELILKCESVGKRYRDGGLDVPVLHGLDLEIRAGESTGIIGSS
                     GSGKSTLLHILGGLDMPSEGRVLLMGEDLRTLNQRRLGDLRNRHLGFVYQFHHLLPEF
                     SALENVMMPLLIGKKSREEAAETAMAMLEKVGLKHRSTHRAGELSGGERQRAAIARAL
                     VTQPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGRFGRVMVM
                     KDGSLHPKQGANA"
     gene            complement(3048..4295)
                     /locus_tag="ACFOCN_001078"
     CDS             complement(3048..4295)
                     /locus_tag="ACFOCN_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HFC6970237.1"
                     /translation="MFSLEAWIGLRYLRAKKRNGFMSFITMVSIAGIALGVTALIVVL
                     SVMNGFQKEIRGQLLNVAPHAEIGYIDNTDTDWRNLLRFTENRKGILAAAPYVSNQAL
                     LANAGEIRGVQMRGILPSEERKVVEYGDKMPAGKFEDLIPGEFDIILGVGLAEALGAE
                     VGNKVTVITPEGNVTPAGVVPRLKQFTVVGLVKTGVYEVDNSLAMTHIQDARVLYRLD
                     KEVAGLRLKLADPQNAPALTATLIPEAQRDAVWVRDWTYNNRSYFEAVELEKRMMFII
                     LTLIIAVAAFNLVSSLVMAVTEKQADIAILRTLGLSPGGVMKIFMVQGAFSGFFGTLA
                     GVVCGVLLGWNVGRVVAFFENLLGVHLINSQVYFIDYLPSDVDMGDVALIACISLGLS
                     FVATLYPSRRASKTQPAEALRYE"
     gene            4500..4778
                     /locus_tag="ACFOCN_001079"
     CDS             4500..4778
                     /locus_tag="ACFOCN_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970238.1"
                     /translation="MNIRTAFALCAIALSAAAAAYAKEIKIDANNTPYSEADAQKLAA
                     TAVGMGVKEPISLNGGSGSITVSGSSATQCVFKVGNGGALQIQGLNCK"
     gene            complement(4834..5451)
                     /gene="recR"
                     /locus_tag="ACFOCN_001080"
     CDS             complement(4834..5451)
                     /gene="recR"
                     /locus_tag="ACFOCN_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HFC6970239.1"
                     /translation="MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEK
                     LVDALQTALKQVYHCAMCNTFCEGGLCDICADETRDGRRLMVVHMPADVSNMEAANCH
                     DGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
                     FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA"
     gene            complement(5518..7056)
                     /locus_tag="ACFOCN_001081"
     CDS             complement(5518..7056)
                     /locus_tag="ACFOCN_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HFC6970240.1"
                     /translation="MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGD
                     EKISDHSINNAMQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV
                     DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQ
                     AEQLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVA
                     LNLKDFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFN
                     KAKEKLGDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDV
                     LKKKHNSEVLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAK
                     DVLTQLNGGKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLP
                     APVIVEVQAVTPPDDIAAQLPLAKQALAQQQSANTFDLLIRYFNGKIKQTKGAQSVDN
                     GDGQ"
     gene            complement(7111..7485)
                     /locus_tag="ACFOCN_001082"
     CDS             complement(7111..7485)
                     /locus_tag="ACFOCN_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase"
                     /protein_id="HFC6970241.1"
                     /translation="MIILHGIPNCDTVKKAKNRLAGYGLEFEFRDFKKQRPSEAEICS
                     WLEQVPLATLLNKRGTSWRKLDAGTQQKVLSSTAEAVKLMSEMPSLIKRPVLECGGRV
                     YVGFSEETYDGIFNRQALCRQG"
     gene            7635..9263
                     /locus_tag="ACFOCN_001083"
     CDS             7635..9263
                     /locus_tag="ACFOCN_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HFC6970242.1"
                     /translation="MISTNGITMQFGAKPLFENVSVKFGEGNRYGLIGANGSGKSTFM
                     KILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAMTERDAI
                     YANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVGISEDLHNAKMAEVAPGF
                     KLRVLLAQALFSKPDVLLLDEPTNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEV
                     CTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKLQELQEFVARFSANK
                     SKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFE
                     TQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGSIKWAEK
                     ASVGYYPQDHENDFDVDMDLSEWMRQWGQDGDDEQVIRGTLGRLLFGSNDVVKKVKVL
                     SGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFVSHDRQF
                     VSSLATQIIELDGKGGYEHYLGDYESYLEKKGVA"
     gene            9335..10588
                     /locus_tag="ACFOCN_001084"
     CDS             9335..10588
                     /locus_tag="ACFOCN_001084"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HFC6970243.1"
                     /translation="MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGK
                     DFPVFLHPETHEEYTLARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDA
                     DGKIIDPFGGQRDLAAGILRHVSPAFAEDPVRILRTARFAARYRFEIAEETIKLMRQM
                     VENGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRAD
                     YHPEIDSGIHTLMTLQRAADMGLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVE
                     PVREVNQRLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQT
                     ALNVCIADTQGRLNREHTPYPQRAHWFALLEAANQADSGKIAAECRAQGKAHLIAEQI
                     DRARLAQIAPLQKTFRAAQDKTEKH"
BASE COUNT         2402 a         3018 c         2793 g         2392 t
ORIGIN      
        1 gggacgggct cgggcgtgct tgccgccatt ttggcgaaac agggcattcc ttccgtcatc
       61 ggcacggata ccaatccgaa agccgtcgcc tgcgcccgtg ccaatattgc ccgtttgggc
      121 tttgaaaaac aggttgagat acgggaaacc gatctgtttc ccgaagggtt tgccgatctg
      181 attgtctgca atccgccctg gcttcccgcc aagccgactt ccgccgtcga atccgcgtta
      241 tacgaccccg aatctgcgat gctggctgcg tttttgcggg atgcgccgaa acatctgaat
      301 cccgacggag aaatccgcct gattatttcc gaccttgcag agcatttggg gctgcgccct
      361 gccgattttt tggaaaaggc atttatccgg gcgggtttgc gtgttgccga tatgatgaaa
      421 accaagccga agcacaaaaa agccgcgaat ccgagcgatc cgcttgcttt tgcgcgaacc
      481 cgggaaacca ctttcctata ccgtttgaaa aaggcataag gggcggcggc gcggcattcg
      541 ggcggattat tcttgtgaaa atacccgctc gagcatactg cccaatgccg tctgacgcgt
      601 tttgacagtg gcggcagctt gccggaaggt ttcttctccg ccgaagaata cgaacttctc
      661 cctcgcgcgg gtaatggcgg tatataacag ctccttactc aatccggaca atgcatcgtc
      721 cccttcgtcc gaaggtgcgg cggaaggcgg cagcagccag acttcccgat attccgaacc
      781 ttggcttttg tggacggtca tggcgaatgc gggttcgaaa tcgggcaggc agcttaccgc
      841 taccttttta aatccgtccg catcggcaaa ataggcggca aggctgccct gccgtccgac
      901 atcttccata atcaatccga tgtcgccgtt gaacagttca agcgcgtagt cgttctgtct
      961 gatcataatc ggttctccgg cgaaataggc ctgatgttcc ggtatgttca ttttgcggcg
     1021 tacatggctg caataggctt cgttgaagtc ttccgcatcc tgccgccaag ctgccaggac
     1081 cacgatatcc gagatgcctg cgtatgcggc ttcgatattg ccgtctttta ccgcctgcca
     1141 ataggctttg tgcgcccggt acaacctttc gactcgagcg ttcggactgc attccgaatg
     1201 ttccagttcg tccggaaacc ggtcaaacaa tgcccacgcc ccctcatcgc ccgatacggc
     1261 ggcacgggca aggcagccga tgccgctgtt gtcgccgaag cggtggctga acgacagatg
     1321 ggcggtgttt tgcgccaaca agggcggatt tgcactgacg ctgaaaccgt gttccggaag
     1381 gaagccggcc agcctttggt gcgtttctcc gtccaaaacg gttttttgcg acaggacgga
     1441 cagcacgtcc ccgattccga cggacgggag ctggttttca tcgcccagca gaatcacgcg
     1501 cgcgccggtt ttgaccgctt ttaaaagttg caacatcaat accgtatcca gcatagaggc
     1561 ttcatcgata accaatacgt caaacggcag cgggtaaaca gggttgaacg ccgcctgcat
     1621 tttgggcggg cgcagcttca gcagtcggtg gacggtttgc ccttccagtt tgagcaaatg
     1681 gcggcggacg gcctccggcg cgtcaaaacc gttgattgca cggtgcagcg cgcgcgccat
     1741 atgtgccgcc gctttgcccg tcggtgcggc aagcgcgatg ttgggaagat tttcgtcttc
     1801 accgcaaatc agcgccagca gtttggcaac cgttgtcgtt ttgcccgttc ccggcccgcc
     1861 ggtaatcacc ataaaagact gcaacagtgc caaggcggcg gcatcgcgct gcccttcgct
     1921 gcccgtgcct tgaaaccatt ttgcgaggtt ttgcctcgcg cctgccgcgt cgggggcgga
     1981 cgtgtcggct gccgccaagc gttttatctc ggcagccaaa tcgtattcca actgccacat
     2041 cctgcccaaa aacagccttc tgccttccaa aatcaaaggc gcggcggatg ttccgaccac
     2101 gggtgcgagt gccgacagcg cgtcagcctc gccaccgctc aaacggataa acgaatgacc
     2161 gttttgcaat gcctgaaaca ggcgttcggt gcagtttgca agcacttcgt cgctggaacc
     2221 cgcatagcgt gccaaaaacc agattaccgc ccttgccgcc gcttgggcaa attcatctgt
     2281 ctgccgttcc atcgtattcc ttgtcgaaat gccgtctgaa ggcgtggggc ttcagacggc
     2341 gcggtgttgt ttcggctgtt taggcgtttg cgccctgttt ggggtgcagg ctgccgtctt
     2401 tcatgaccat cacgcgcccg aagcggccgg cgagttcgtc gtcgtgcgtt acgaccacca
     2461 gccccgttcc caattctgtt ttcagttcca gcatcatatc caaaacattc cttgcgtttg
     2521 ctcggtcgag attgccggtc ggttcgtcgg caagcaggca tttgggttgc gtaaccaagg
     2581 cgcgtgcaat ggcggcacgc tgccgctcac cgcctgaaag ttcgcccgcg cggtgcgtcg
     2641 aacggtgttt cagtccgacc ttttccagca tcgccattgc cgtttctgct gcctcttcac
     2701 ggcttttttt gccgatcaga agcggcatca tcacgttttc cagtgccgaa aattcaggca
     2761 gaagatggtg gaactggtac acgaaaccga gatggcggtt acgtaaatcg cccaaacgcc
     2821 gctggtttaa ggtacgcaaa tcctcgccca tcagcagcac cctgccttca gacggcatat
     2881 ccagcccgcc tagaatatgc agcagcgtcg attttccgct gcccgaagaa ccgatgatgc
     2941 cggtgctttc ccccgcgcgg atttccaaat ccaagccgtg cagcaccgga acatccaaac
     3001 cgccgtcgcg gtagcgtttg cccacgcttt cgcatttcaa aatcaactca ctcataacgc
     3061 aaagcctccg ccggttgggt ttttgacgcg cgccggctcg ggtagagcgt ggcaacgaaa
     3121 gacagtccca aagaaatgca ggcaatcagg gcaacgtcgc ccatatcaac atcgctgggc
     3181 aggtagtcga taaaataaac ctgcgaattg ataaggtgga caccgagcag gttttcaaaa
     3241 aatgccacga ccctgccgac gttccaaccc aaaagcacgc cgcagaccac acccgccagc
     3301 gtgccgaaaa agcctgaaaa cgcgccctgc accataaaaa tcttcatcac gccgccaggg
     3361 gaaagaccca aagtccgcaa aatcgcaatg tccgcctgct tttccgtaac cgccatcacc
     3421 aaggaagaga caaggttgaa cgccgccacg gcgataatca gcgtcaggat gatgaacatc
     3481 atccgttttt ccaactcgac cgcctcaaaa tagctgcggt tgttgtacgt ccaatcgcgc
     3541 acccaaaccg cgtccctttg cgcctccgga atcagtgttg ccgtcaaggc gggggcgttt
     3601 tgcgggtcgg cgagtttcag ccgcagcccc gcaacttcct tatccaagcg gtacagtacg
     3661 cgcgcgtctt ggatatgcgt catcgccaat gaattgtcaa cctcgtaaac acccgtctta
     3721 accagaccga ccacggtaaa ctgtttcaac ctcggtacga ctccggcagg ggtaacgttg
     3781 ccctccggcg tgatgacggt aactttattg ccgacttccg cccccaaagc ctccgccaag
     3841 ccgacaccga ggataatgtc aaactcgccc ggaatcaggt cttcaaattt gcctgccggc
     3901 attttgtcgc catattccac cactttgcgt tcttcagacg gcaaaatgcc gcgcatctgc
     3961 acgcccctga tttcgcccgc gtttgccagc agagcctgat tggaaacata gggcgcggca
     4021 gccaaaatac ctttgcggtt ttccgtaaac cgaagcaggt tgcgccaatc cgtatccgta
     4081 ttgtcgatat agccgatttc ggcgtgcggc gcgacattca ggagctgccc gcgtatttct
     4141 ttctgaaagc cgttcataac cgacaagacg acaatcagcg cggttacgcc caaggcgatt
     4201 ccggcaatcg aaaccatcgt gataaacgac ataaagccgt tgcgcttttt cgccctgaga
     4261 tacctcaagc ctatccaagc ctctagagaa aacataacgc taccttaaaa atgtctgcaa
     4321 acgtgccgcc ccggacggcg gtttgggggc ggcggcaaaa gtttattgta ccgtaaaacc
     4381 ccggcagcgt ccgaacgccc gagtgcgggg gacggggcgg cagagcgggc ggaaaacttg
     4441 cacaacgcgt caaactgccc tatcctttcc ttcagaaaaa ccgtttcttg aggaaaacaa
     4501 tgaatatccg aactgctttt gctttgtgcg ccatcgcctt atccgccgct gcggctgcct
     4561 acgccaaaga aatcaaaatc gatgccaaca acacgcctta ttccgaagcc gacgcgcaaa
     4621 agctggcggc aacggcagtc ggtatgggtg ttaaggaacc tatcagcctg aacggcggca
     4681 gcggcagcat taccgtgtcc ggcagcagcg cgacgcagtg cgtgttcaaa gtcggcaacg
     4741 gaggcgcatt gcagattcaa gggctaaact gcaagtaaac cgcccggaaa aatgccgtct
     4801 gaaggcttca gacggcattt tgcattggcg gcgttatgcc ccgccttctt taatcaggcg
     4861 gcgttcgtac accgcctgcg ccagcgttcc cgcatcgaca tattccaatt cgccgcccaa
     4921 gggaatgccc tgcgacagcc tgctgacttt gtaaggcagg tttttaaaaa actcggacag
     4981 gacatacgcc gtcgcattgc cttctgcggt aaaagcggtt gcaataatga tttcttcgac
     5041 ttccccgccg cccagccgtt gcgccagcct gtccaatgcg atggcggata cgtccattcc
     5101 caatgccgta ttgatttgcc ccatcaggac gaaatacagc ccgtcgtggc agtttgccgc
     5161 ttccatattc gacacgtcgg caggcatatg caccaccatc agccgccgcc cgtcgcgtgt
     5221 ttcatcggca caaatatcgc acaatccgcc ttcgcaaaac gtgttgcaca tcgcgcaatg
     5281 gtaaacctgc ttcaatgccg tctgcaaggc atccaccagt ttttcagcct ctttgcgctt
     5341 gtgttggagc aaatgatacg ctatccgctg tgccgatttc ggcccgacgt tgggtaaaac
     5401 cttcagcgcg tcgatcaatc cttggaaggc atcttgtttt ttgtggctca tcatattccg
     5461 ccgtatggga aaacggccgg aatattccga ccgttatttt gtcaacaaaa gtgtcaatta
     5521 ctgaccgtcg ccgttgtcga ccgattgcgc tcctttggtc tgtttgattt tgccgttgaa
     5581 ataacgtatc aacaagtcga aagtattggc agactgctgt tgcgccaaag cctgttttgc
     5641 aagcggaagc tgtgcggcga tatcatccgg cggggttaca gcctgtactt cgacaatcac
     5701 gggtgccggc agaccgatca gcctgacgta ggcgggtttg ccgtttgccg gttttgcttt
     5761 cagcagttcc gcataagcct cgggcggcat ggactgcctt gcctgctgtg cgcccaaaac
     5821 ggacacttcc gaccatttca cgtcaacagc cttgccgccg ttcagttggg taagcacgtc
     5881 ttttgccttg ttttcggcaa gtttggcggc ttcggtacgg atataagcct gacgtaccgc
     5941 gtctttggct tcggcaaacg gcagggtttt ctcttcgcgg acttctttgg cgcggacgac
     6001 ccacgcggtt tcgctgttga tggtcagcac ttctgaattg tgttttttct tcaatacgtc
     6061 gtcgctgaaa acggcattga tcaggttttc gggcataccg gacatttgcg catcctgcct
     6121 gctcagccaa gtttcttggg tttcgacttt caaaccgctg tttttggcgg cttcggcaag
     6181 cgaggaagga tggttgaacg cgtcatcgcc cagcttttct tttgccttat tgaagtcggc
     6241 aaccgccttt ttcattttca attcgttttc tacggcggct ttttcctgct cgaaagaagg
     6301 tttggcttca tttgccggca aacgcgccac gcgctcttca aacgcatttt tcacttctgt
     6361 ttcgctgacg gtctgtttgt ctgcaaagtc tttcagattc aaggcgacat attccaattt
     6421 gaccgctttg ggaagcaggt agtctttttt gtttgcgtta taaaacttct gcaaatcggc
     6481 ttcagacact ttgacttggg cgatgaattc gtcggggttg aaagtgtgcg aacggatggt
     6541 gcggttgacc tgcgtcagcc tgatcagctg ttccgcctgc gcgtcgccga ccaatacgcc
     6601 gttttggacg aggtttacca aattctgcaa ggcaaactga tcgcggattt cttcgacaaa
     6661 ctggtcttca gacatatgac gttgggaaag gtagcggttt aaaagcgcgt ggtcgaattt
     6721 gccgtttgcg tcgtggaaat tgggatcgtc cacgataatc tgcttgattt gttcggaaga
     6781 aaccgaaatg cccatcagct tcgcgccctg tttcaggtag gcgcgttgca gcagggattg
     6841 gaacaccgcg tcgcgcgaag ggctgccgcc gtccgcctgt tcattttgca tagcgttgtt
     6901 gatggagtgg tcgctgattt tttcgtcgcc cacttggacg atgtagtcgg cacccggatg
     6961 ggataccgtg ctgaccccga agccgacgaa ggttaatgca atcagcccca aaaggacttg
     7021 ggcgggcgtt ctgtattttt cgatggaatg gaacatattt tcagattgga aatgggattg
     7081 ggaaattcaa gtcgggtatt gtaacggttt ttatccctgt ctgcacaggg cttgccgatt
     7141 gaagatgccg tcgtaggttt cttcgctgaa gccgacataa accctgccgc cgcactccaa
     7201 tacgggacgc ttgatcaggc tcggcatttc ggacatcagt ttgacggcct ccgccgtcga
     7261 ggacagcact ttttgctgtg ttccggcatc aagtttgcgc cagctcgtcc cgcgtttgtt
     7321 gagcagggtt gccaaaggca cttgttccag ccacgagcag atttccgctt cagacggcct
     7381 ctgtttttta aaatcccgaa attcaaactc caagccgtat ccggcaagcc tgtttttggc
     7441 ttttttgact gtgtcgcaat ttggaatgcc gtgaaggatt atcatttgga aaccttttgt
     7501 ctgaaataat aaaacggata ttttactata agtgtctgaa aatttgcccg tctgtttcag
     7561 acagcggggc ggttatgtta caatccgaaa attcgaaaaa tttaatctct tgttcaataa
     7621 aggctttacc aatcatgatt tctaccaacg gcatcaccat gcagttcggc gcgaagccgc
     7681 tgtttgaaaa cgtatccgta aaattcggag aaggcaaccg ttacggcctg atcggcgcga
     7741 acggttcagg caaatccacc ttcatgaaaa tcctcggcgg cgatttggaa cagacggccg
     7801 gcgaagtggc gattgaaaac ggcgtgcgtt tgggtaaatt gcgccaagac cagtttgcct
     7861 acgaagacat gcgcgtgctg gacgtggtga tgatggggca taccgaaatg tgggcggcga
     7921 tgaccgaacg tgatgcgatt tacgccaatc ccgaagccac cgaagacgac tacatgaaag
     7981 ccgccgaact ggaagccaag ttcgccgaat acgacggcta caccgccgaa gcgcgtgccg
     8041 ccgaactgtt gagcggcgtg ggcatttccg aagatttgca caatgcgaaa atggcggaag
     8101 tcgccccggg cttcaaactg cgcgtattgc tggcgcaggc gctgttctcc aagccggatg
     8161 tattgctctt ggacgaaccg accaataact tggacattaa taccatccgc tggttggaag
     8221 gcgtgttgaa ccaatacgac tccacgatga ttatcatcag ccacgaccgc cactttttga
     8281 acgaagtctg cacacacatg gcggatttgg actacaacac catcaccatc tatccgggca
     8341 actacgacga ctacatgctc gcttctgccc aatcgcgtga gcgcgccctg aaagacaatg
     8401 ccaaggcgaa agaaaaattg caggaattgc aagaatttgt ggcgcggttc agtgccaaca
     8461 aatccaaagc ccgtcaggca accagtcgtc tgaagcaggc agacaaaatc aaatcggaaa
     8521 tggtcgaagt caaaccctct acccgtcaaa acccgtatat ccgttttgaa gccgatgaaa
     8581 aagccaagct gcaccgtcag gctgtggaag ttgaaaaact ggcgaaacgc tttgaaaccc
     8641 agttgtttaa aaacctgaac ttcatccttg aagcgggaca acgcctcgcc atcatcggcc
     8701 cgaacggcgc gggcaaatcc accctgctga aactcttggc cggcgcgtac aaccccgaat
     8761 attcagacgg tctgctgccg gacgaaggca gcatcaaatg ggcggaaaaa gccagcgtcg
     8821 gctactatcc gcaagatcac gaaaacgact tcgatgtcga tatggatttg agcgaatgga
     8881 tgcgccaatg ggggcaggac ggcgacgacg aacaagtcat ccgcggcact ttggggcgtt
     8941 tgctcttcgg cagtaacgat gtcgtgaaaa aagtgaaggt tctctccggc ggcgaaaaag
     9001 gccgtatgct ttacggcaaa ctgttgctgt tgaaacccaa tgtcttagtc atggacgaac
     9061 cgaccaacca catggatatg gaaagcatcg aatccttgaa catggcgctg gaaaaataca
     9121 acggcacgct gattttcgtc tcccacgacc gtcagttcgt ttcttccctg gcaacccaaa
     9181 tcatcgaact ggacggcaaa ggcggatatg aacactactt gggcgattac gaaagttact
     9241 tggagaaaaa aggcgtagca taaccgccgg ttggaacaat gccgtctgaa gccgcttcag
     9301 acggcattgt tgataacttt aaaataggaa gcatatgcag acttacctcg tcggcggcgc
     9361 cgtccgcgat tatcttttgg gcttgcccgt caaagaccgc gattgggtgg tcgtcggcgc
     9421 agacgcacaa accatgctgg cgcaaggctt ccagccggtc ggcaaagatt ttcccgtgtt
     9481 tctccatccc gaaacgcacg aagaatacac cctcgcccgc accgagcgca aaaccgccaa
     9541 aggttacgtc ggtttcagtt tccacgccga caaagacgtt acgctggagc aggacttgat
     9601 gcgccgcgac ctgaccatca acgcgatggc gcaagatgcg gacggcaaga ttatcgaccc
     9661 tttcggcgga caacgggatt tggcggcagg cattttgcgc cacgtttccc cggccttcgc
     9721 cgaagacccc gtccgcatcc tgcgtactgc ccgctttgcc gcgcgttaca ggtttgaaat
     9781 cgccgaagaa accataaagc tgatgcggca gatggtggaa aacggcgaag cggacgcatt
     9841 ggttgccgaa cgcgtctggc aggagtttgc gaaaggtttg atggaaaaaa atccgcgcaa
     9901 aatgattgaa gtgttgcgcg aatgcggcgc gctcaaagtc ttgctgcccg aagtcaatgc
     9961 cctcttcggc gtgccgcaac gcgccgacta ccatcccgaa atcgacagcg gcatccatac
    10021 cctgatgacg ctgcaacgcg ccgccgatat gggtttgagc ctgcccgaac gctatgccgc
    10081 cctgctgcac gacttgggca aagccaaaac accgtccgac atcctgccgc gccaccacgg
    10141 acacgacctc gccggtgtcg aacccgtgcg cgaagtcaat cagcggctgc gtgcgccgaa
    10201 acattgcgcc gagcttgccg aattggtttg ccgttggcac attattttcc accaagtcgg
    10261 acagcttaaa agccaaacca ttctgaacgt attgaaaaaa accgatgcct tccgccgtcc
    10321 cgaacgcttt cagacggcat tgaacgtctg cattgccgac acgcaaggcc gtctgaaccg
    10381 cgaacacacg ccctacccgc aacgcgcaca ctggttcgcc ctgctcgaag ccgccaatca
    10441 ggcggattcg ggcaaaatcg ccgccgaatg ccgcgcgcag ggaaaagcgc accttatcgc
    10501 cgaacaaatc gaccgggcgc ggctggcaca aatcgcccca ttgcaaaaaa cgtttcgagc
    10561 ggcgcaagac aaaacagaaa aacattaaaa cgtccaatgc agcca
//
LOCUS       DAXIFD010000062        10570 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.062, whole genome shotgun sequence.
ACCESSION   DAXIFD010000062 DAXIFD010000000
VERSION     DAXIFD010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10570
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.062"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            153..1058
                     /locus_tag="ACFOCN_001085"
     CDS             153..1058
                     /locus_tag="ACFOCN_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6970244.1"
                     /translation="MGKGGDIVVGNGKKYAAPLLVLGCVVFGLGSLIVRSVPVGSYAI
                     AFWRLLISVFVFWFLARFFRQKFPKNRKTVRYALTAGVFLAFDLALWHESIHAVGPGI
                     STLLNSLQIFFLSAIGVFFFGERLSGLKKAGLISAVAGVAMIAGAEFGYNGNAVWGFV
                     SGLVSGLMLALSMVFVRKTHEIETVALFPSMMILSLGGAVSLVVPALLMDGGALYPTT
                     WKDAGLVLVYGVVMQCFAWAMVAYAIPLLSLSLTGLLLLSEPVAALFIDYFGLGKPIE
                     GVQWAGVALTLSAIYLGSLKQQSEP"
     gene            1104..1253
                     /locus_tag="ACFOCN_001086"
     CDS             1104..1253
                     /locus_tag="ACFOCN_001086"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970245.1"
                     /translation="MNWQAVKTGKTKHASNGAERKMPSEALSDGIGAGRIKKAASAGM
                     AMQLK"
     gene            complement(1472..2491)
                     /gene="lepB"
                     /locus_tag="ACFOCN_001087"
     CDS             complement(1472..2491)
                     /gene="lepB"
                     /locus_tag="ACFOCN_001087"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFC6970246.1"
                     /translation="MNTMLMSGAAAALLAGIILYFKSDKKRQENGEWSSGLEYAYILT
                     AVGVFAALSLFMSFTAVFLIFVVLCGTAWGVYKYRLKTHPEISESSHFGDYFGSFFPT
                     VLVLFLIRSFIAEPFQIPSSSMRPGLIKGDFILVGKFSYGLRVPVLNNIFIPTGKIER
                     GDVVVFNYPLQPEMTYIKRIVGIPGDVVEYRNKVLTVNGKPASDIPDGTYRYPDDTDP
                     SEIHNTDMFHSGLDGKSFNILKKEGQPAVSLPVLGKYTSDIMSENGYSIEQSGLEHCQ
                     YADDGSGFVCKVPEGRYFAMGDNRDNSADSRYWGFVDDKLVVGKAMFILMNFGDFGRA
                     GTAIR"
     gene            complement(2634..4427)
                     /gene="lepA"
                     /locus_tag="ACFOCN_001088"
     CDS             complement(2634..4427)
                     /gene="lepA"
                     /locus_tag="ACFOCN_001088"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HFC6970247.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLADRFIQYCGGLDLREMSTQVLDSM
                     DIEKERGITIKAQTAALNYKARDGQVYQLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYTAIDLGVEVVPVLNKIDLPAADPERVEQEIEDIIGIDAVGAVQ
                     CSAKSGIGVEDVLEEIVAKIPAPTGDENAPLQAVIVDSWFDNYVGVVMLIRVKNGTIK
                     LKDKVRFMSTKAETQVEQLGVFTPKSVQKQELKAGEVGFLITGVKELGQAKVGDTVTL
                     VANPATEPLPGFQEVQSQVFAGLYPVESHDYEALRDALEKLQLNDASLKFEPEVSQAL
                     GFGFRCGFLGLLHLEIVQERLEREFDMDLITTAPTVVYEVVLKSGEKIEVENPSKLPD
                     IGSIETILEPIITATILVPQEYVGNVMTLCNQKRGVQVNMQYMGRQVMLTYDLPMNEV
                     VMDFFDKLKSTSRGYASLDYHFKEFQPSDLIKLDIMVNGEKVDALSLIVHRQSAVHRG
                     RELASKMRELIPRQMFDIAVQAAIGSQIIARENVKALRKNVLAKCYGGDITRKKKLLE
                     KQKAGKRRMKQVGNVEIPQSAFLAILQVSDK"
     gene            complement(4570..5271)
                     /locus_tag="ACFOCN_001089"
     CDS             complement(4570..5271)
                     /locus_tag="ACFOCN_001089"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008782 - adenosylhomocysteine
                     nucleosidase activity [Evidence IEA];
                     GO_function: GO:0008930 - methylthioadenosine nucleosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009164 - nucleoside catabolic process
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HFC6970248.1"
                     /translation="MSLKTVAVIGAMEQEIELLREMMENVKAVSFGKFTAYEGELAGK
                     RMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHD
                     VDVTAFGYVWGQVPQLPAVFVSDDLLVGKAKRAARTFEGAAVEQGLIVSGDRFVHSSE
                     GVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTA
                     AASSAKMVAEIVKSL"
     gene            5439..6569
                     /locus_tag="ACFOCN_001090"
     CDS             5439..6569
                     /locus_tag="ACFOCN_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6970249.1"
                     /translation="MFTDENMTAKEELFAWLRHMNQNKGSDLFVTTHFPPAMKLDGKI
                     TRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECNFAISLPDTSRFRVNAMIQRGAT
                     ALVFRAITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
                     SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDR
                     ETMDYAIAFAETGHLCMATLHANSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQ
                     RLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKSTTLGMQTFDQHLYQL
                     YEKGDISLQDALKNADSAHDLRLAVQLRSRRAQSSGPDLELL"
     gene            6604..7581
                     /locus_tag="ACFOCN_001091"
     CDS             6604..7581
                     /locus_tag="ACFOCN_001091"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HFC6970250.1"
                     /translation="MIYPWHNEQWRQIAEHWERRPNAWLFAGKKGIGKTEFARFAAQA
                     LLCENPSPDHRACGACASCHFFEQGSHPDFYEITPLSDESENGRKLLQIKIDAVREII
                     DNVYLTSVRGGLRVVLIHPAESMNIQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI
                     KSRCRKMVLPAPSHEEALAYLRERGVAEPEERLAFHSGAPLFDEADGVRALRIKLLDI
                     LAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQ
                     TASGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKENG"
     gene            7585..7935
                     /locus_tag="ACFOCN_001092"
     CDS             7585..7935
                     /locus_tag="ACFOCN_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HFC6970251.1"
                     /translation="MSDGQNIPAKMMSLQLKDMNLLYSSYMPFLEHGGLFVQTDDVFS
                     IGDDILLAVEILNFPKLFLPTKVAWINPARTSSKPKGVGLAFTKHENCLKVKDQIEVE
                     LGSTIGGSRPTFTM"
     gene            7940..8719
                     /locus_tag="ACFOCN_001093"
     CDS             7940..8719
                     /locus_tag="ACFOCN_001093"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6970252.1"
                     /translation="MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESF
                     SEVFAIAEAHEHIYCTIGVHPDSKEAEEFSVAEMVEAAAHPKVVGIGETGLDYYWCKG
                     DLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
                     RAAMDFGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPA
                     FVRHTAEHIAKLRDQTLEQVAAYTTENFYRLFQKVPDMRAV"
     gene            8745..8960
                     /locus_tag="ACFOCN_001094"
     CDS             8745..8960
                     /locus_tag="ACFOCN_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HFC6970253.1"
                     /translation="MKAIHPYACPRCCRLPANTFRTGMANSASKFCIAKGGRREVKKD
                     ESGGGYALCHLPDSRIVEEWEYFRSQH"
     gene            9061..9372
                     /gene="grxD"
                     /locus_tag="ACFOCN_001095"
     CDS             9061..9372
                     /gene="grxD"
                     /locus_tag="ACFOCN_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HFC6970254.1"
                     /translation="MASIHDQIKEVVTTHRVVLFMKGTKQFPQCGFSSRAVQILNAAG
                     CTDYVTVNVLENPEVRQGIKEYSDWPTIPQLYVNGEFVGGSDILMEMYEAGELQELLK
                     A"
     gene            9478..10104
                     /gene="upp"
                     /locus_tag="ACFOCN_001096"
     CDS             9478..10104
                     /gene="upp"
                     /locus_tag="ACFOCN_001096"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HFC6970255.1"
                     /translation="MNVNVINHPLVRHKLTLMREADCSTYKFRTLAIELARLMAYEAS
                     RDFEIEKYLIDGWCGQIEGDRIKGKTLTVVPILRAGLGMLDGVLDLIPTAKISVVGLQ
                     RDEETLKPVSYFEKFVDSMDERPALIIDPMLATGGSMVATIDLLKAKGCKNIKALVLV
                     AAPEGVKAVNDAHPDVTIYTAALDSHLNENGYIIPGLGDAGDKIFGTR"
     gene            10127..10447
                     /locus_tag="ACFOCN_001097"
     CDS             10127..10447
                     /locus_tag="ACFOCN_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HFC6970256.1"
                     /translation="MNFQDYLATFPSIDHLGGLDVQDADGKTVHHIPAVQGKLGSLKL
                     YNALAERFDGKLDKEAAEQGLIWFAEHVADARAHPGKHPNIDLLEKVVQSGETLLLKP
                     LAAQ"
BASE COUNT         2487 a         2692 c         2821 g         2570 t
ORIGIN      
        1 gggttttatc cggcaggacg gttttttgcc ccaacggaaa atagtcggcc tgcccgtaaa
       61 atcagccgtt tgtccgggtg cagccggggc tttgggcttc agacggcata ttttcggaat
      121 ggcggcattc ttgccgtcgg cgcggcagcc gtatggggaa gggaggggat attgtggtcg
      181 gtaacggcaa aaaatatgcc gcaccattgc tggtgctggg ttgcgtggtg ttcggtctgg
      241 gcagtctgat tgtcagatcc gtccccgtcg gttcgtatgc aatcgcattt tggcggttgc
      301 tgatttcggt gttcgtattt tggtttttag cacggttttt caggcaaaaa ttcccaaaaa
      361 acaggaaaac cgtccgatat gccctgacgg cgggcgtgtt tctcgctttc gatttggcgt
      421 tgtggcacga aagcatacac gcggtcgggc cgggtatttc caccctgctc aacagcctgc
      481 aaatcttttt cttgtcggca atcggtgttt tctttttcgg cgagcgtttg agcgggctga
      541 aaaaggcagg cttaatatcg gcagttgccg gcgtggcgat gattgccggt gcggaattcg
      601 gctacaacgg taatgcggtt tggggattcg tcagcggttt ggtatcggga ctgatgctcg
      661 ccctgtcgat ggtgttcgtc cgcaaaaccc atgaaatcga gacggtggcg cttttccctt
      721 caatgatgat tttgagtttg ggcggcgcgg tatcgctggt tgttccggca ttgctgatgg
      781 atggcggcgc gctttatccg acgacttgga aagatgcggg tttggtgctt gtgtacggcg
      841 tggtgatgca gtgcttcgcg tgggcgatgg ttgcctatgc gattccgctg ctttcgctgt
      901 cgctgacggg gctgctgctt ttgtccgaac cggttgccgc cctgttcatc gattatttcg
      961 ggttgggcaa accgattgaa ggcgtgcagt gggcaggggt ggcgctgacg ctttcggcaa
     1021 tttacctcgg ttcgctgaaa cagcagtccg agccttgact ccgtccggca tcagattttc
     1081 tgccgtggca aacctgcgta cgattgaact ggcaggcagt caaaaccggc aagaccaaac
     1141 acgccagcaa cggcgcggag cggaaaatgc cgtctgaagc cctttcagac ggcatcgggg
     1201 cgggcagaat caaaaaagcc gcctccgctg gaatggcaat gcaactaaaa taatgtccgt
     1261 atttccatat gccgcccaca ccgtcagtcg gacgaaatgc cctttattca atgggatggg
     1321 tttccacaca aacggaaata tagtggatta aatttaatcc actatattat ccccgaggct
     1381 gccggcaggg aaacaaggcg tttgatgata aaaatgccgt ctgaaacagg gttcggatgg
     1441 catttttgat gttccggcgt aattttccgg cctaacggat tgccgtaccg gccctgccga
     1501 aatcgccgaa gttcatcaaa atgaacattg ccttgccgac aaccagcttg tcatccacaa
     1561 atccccagta gcgcgaatcg gcactgttgt cgcggttgtc gcccatagcg aaatagcgtc
     1621 cttcgggaac tttgcacacg aaaccgctgc cgtcgtcggc atattggcag tgttccaaac
     1681 cgctttgctc tatggaatat ccgttttcag acataatatc ggaggtatat ttgcccaata
     1741 cgggcaggga aacggcaggc tgtccttctt ttttcagaat attgaaggat ttgccgtcca
     1801 aaccgctgtg gaacatatcc gtattgtgga tttcggatgg gtcggtgtcg tcgggataac
     1861 ggtatgtgcc gtcaggaata tcggaagcag gttttccgtt taccgtcaaa actttattcc
     1921 gatattcgac cacatcgccc ggaatgccga caatacgctt gatgtaggtc atctccggtt
     1981 gcaaaggata attaaaaacg accacatcgc cccgttcgat tttgcctgta ggaataaata
     2041 tattgtttaa aacgggtacg cgcaggccgt aggaaaattt gccgaccaaa atgaaatcgc
     2101 ccttaatcag gcccgggcgc atcgagctgg acgggatttg gaacggttcg gcaataaacg
     2161 accggatgag gaacaatacc aaaacggtag ggaagaaact gccgaaataa tcgccgaagt
     2221 ggctgctttc cgagatttcg ggatgagtct tcaggcggta tttgtatacc ccccaagccg
     2281 taccgcacaa tacaacgaaa atcaggaaaa cggcggtaaa gctcataaac agggacaaag
     2341 cggcaaacac gccgaccgcc gtcaggatat aggcgtattc cagaccggaa ctccattcac
     2401 cgttttcctg ccgctttttg tcgcttttga aataaaggat gatgccggca agcagcgcgg
     2461 cagccgcgcc cgacattagc attgtgttca ttgttgttcc ttaatgctta aaaacccgcc
     2521 tgtccgtgca accgttttaa ggcggcaaat tgcaaaattt gtttgcgggc gtgtgcccct
     2581 gaaatcaggg cggtttgagg ggtgttcccg acgcgccgcc ctgtgtgcca gagttatttg
     2641 tcgctcacct gcaaaatcgc caagaacgcg ctttgcggaa tttccacatt gcccacttgt
     2701 ttcatacggc gtttacctgc cttttgtttt tcaagcagtt ttttcttacg cgtaatatcg
     2761 ccgccgtaac atttcgccaa aacgttttta cgcagggctt tgacgttttc gcgggcgata
     2821 atctggctgc cgatggcggc ttggacggcg atgtcgaaca tttggcgcgg aatcagctcg
     2881 cgcatttttg atgccagctc gcggcctcgg tgaaccgcgc tttgacggtg cacaatcagg
     2941 cttaatgcat cgactttttc gccgttgacc ataatatcca gcttaatcaa atcagacggt
     3001 tggaactctt tgaaatggta gtccaacgaa gcataaccgc gcgaagtgga tttgagtttg
     3061 tcgaagaagt ccatgacgac ttcgttcatg ggcaaatcgt aagtcagcat gacttggcgg
     3121 cccatgtact gcatattgac ctgaacgccg cgcttttggt tacacaaagt catgacgttg
     3181 ccgacgtatt cctgcggcac aaggatggtc gcggtaataa tcggctcgag tatggtttcg
     3241 atgctgccga tgtcgggcag tttggacggg ttttcaactt cgattttttc gccgcttttc
     3301 aacacgactt cgtaaaccac cgtcggcgcg gtggtaatca aatccatatc gaactcgcgc
     3361 tccaagcgtt cctgcacgat ttccaagtgc aacagaccca agaagccgca acggaagccg
     3421 aagcccaatg cctgggaaac ttcaggctcg aatttcaacg aagcgtcgtt aagctgcaat
     3481 ttttccaaag cgtcgcgcaa ggcttcgtag tcgtggcttt ccacgggata aagtccggcg
     3541 aatacttggc tttgtacttc ttggaagccg ggcagcggct cagtggcagg gttggcaacc
     3601 agtgtaaccg tatcgccgac tttcgcctga cccaattctt ttacgccggt aatcaaaaag
     3661 cccacttcgc cggctttgag ttcttgtttt tgaaccgatt tcggtgtgaa tacgcccaac
     3721 tgctcaacct gcgtttccgc cttggtgctc ataaagcgca ctttgtcttt cagtttgatg
     3781 gtgccgtttt tcactcgaat cagcatgacc acgccgacgt agttgtcaaa ccacgaatcg
     3841 acaatcacgg cttgcagcgg cgcgttttca tcgccggtcg gcgcaggaat tttggcaacg
     3901 atttcttcca aaacgtcttc cacgccgatg ccgcttttgg cggaacactg caccgcgccg
     3961 accgcatcga tgccgatgat gtcttcaatt tcctgctcca cgcgttcggg gtcggcggct
     4021 ggcaggtcga ttttgttcaa aacaggcaca acctccacgc ccaaatcaat cgcggtgtaa
     4081 cagttcgcta cggtttgcgc ttccacgccc tgcgacgcgt caacgaccaa aagcgcgcct
     4141 tcgcaagccg acagcgaacg ggaaacttcg taagagaagt cgacgtgtcc cggcgtgtca
     4201 atcaaattaa gctgatacac ctgcccgtcg cgcgctttat agttgagcgc ggcggtttgc
     4261 gctttgatgg taatgccgcg ctctttttcg atgtccatgg aatcgagtac ctgcgtactc
     4321 atttcgcgca aatccaaacc gccgcaatat tggatgaagc ggtcggcaag cgtcgatttg
     4381 ccgtggtcga tgtgggcaat gatggagaaa tttcggatat ttttcattag agttgttttg
     4441 aatgtcggac agtgggtttg ggaaatgccg tctgaacaaa cggcgttgcg tccgaatatc
     4501 gggcgcaacg tggaaatagc ccgatattct aacggaaaac cgctgttttg gcatgatttg
     4561 ataaaggttt tataaagatt tgacgatttc tgccaccatt tttgcagaac ttgccgccgc
     4621 cgttttcaaa aattcgtcaa agctgatgtc tgctttttca tctgccgaat cggaaaccgc
     4681 gcggatgatg acgaaaggcg tttccaactg atgacaggtt tgggcgattg ccgccgcttc
     4741 catttctacc gccttaactt cggggaagtg cttgcggatt tccgccacgc cttcgctgct
     4801 gtggacgaag cggtcgccgc tgacaatcag accttgttct accgccgcgc cttcaaacgt
     4861 ccgcgccgcc cgttttgcct tgccgaccaa gaggtcgtct gaaacgaata cggcgggcag
     4921 ttgcggcact tgtccccaaa catagccgaa tgcggttaca tcgacatcgt ggtgtgcggt
     4981 ttccgtgcca atcaccacgt cgccgacttt caaacccttg cccaaaccgc ccgcgctgcc
     5041 ggtgttgatg acgcagtccg ctgcgaattc acggataatc caagccgttg caaccgccgc
     5101 gttgaccttg ccgatgccgc tcaatgcaag caccatgcgt tttcccgcta attcgccttc
     5161 ataggcggta aacttgccga aagagacggc tttgacattt tccatcatct cgcgcaaaag
     5221 ctcgatttct tgttccattg cgccgataac ggctactgtt ttcaaagaca tattgctgac
     5281 ctgttgtgaa tttcggatag aatgcctgat tatacacgct aacacggcag gattgagtgg
     5341 gggcggtttg tccgtgccgt ctgaaacggt ttcagacggc acggcgggtt tttggtagaa
     5401 tgggaaggta cagattgttt gaagattagg ggacgaggat gtttaccgat gaaaatatga
     5461 ccgcaaagga agaactgttc gcatggctgc gccatatgaa ccaaaacaaa ggttccgacc
     5521 tgttcgtgac gactcatttc ccgcccgcaa tgaagctgga cggcaaaatc acccgcatca
     5581 cggacgaacc gctgacggcg gaaaaatgta tggaaatcgc cttttcgatt atgagtgcga
     5641 agcaggcgga agaattttca tcgaccaacg agtgcaactt cgccatcagt ctgccggaca
     5701 ccagccgctt ccgcgtcaat gcaatgatac agcgcggcgc gacagcgttg gtattccgtg
     5761 cgattaccag caagattccc aagtttgaaa gcctgaacct gccgccggtc ttgaaggatg
     5821 tcgcgctgaa aaaacgcggg ctggttattt ttgtcggcgg caccggctcg ggcaaatcga
     5881 cttcgcttgc ctcgcttatc gactaccgca atgaaaattc gttcggacac atcatcacca
     5941 tcgaagaccc gatcgagttt gtccacgaac acaaaaactg catcatcacc cagcgcgagg
     6001 tcggcgtgga tacggaaaac tggatggcgg cgttgaaaaa cacgctgcgt caggcgccgg
     6061 atgtgattct gatcggcgaa atccgcgacc gcgaaacgat ggactacgcc attgcctttg
     6121 ccgaaacggg gcatttgtgt atggcgacgc tgcacgccaa cagcaccaat caggcactcg
     6181 accgcatcat caactttttc cccgaggagc ggcgcgaaca attgctgacg gatttgtcgc
     6241 tcaaccttca ggcgtttatt tcgcaacgcc tcgttccgcg agacggcggc aagggcaggg
     6301 tggcggcagt cgaggtgctg ctcaattcgc ccctgatttc ggagttgatt cacaacggca
     6361 acatccatga aatcaaagaa gtgatgaaaa aatccactac cctgggtatg cagaccttcg
     6421 accaacacct ttaccaattg tatgaaaaag gcgatatttc cttgcaggat gccttgaaaa
     6481 atgccgattc ggcgcatgat ttgcgtttgg ctgttcagtt gagaagccgc cgcgcgcaaa
     6541 gttccggacc ggatttggaa ttgctctgat gaagggtatg gatttccgga cggatggttt
     6601 gaaatgattt atccgtggca taatgagcaa tggcggcaga ttgcggaaca ttgggagcgc
     6661 cgtcccaatg cttggctgtt tgccggcaaa aaaggcatag ggaaaaccga gtttgcccgc
     6721 tttgcggcgc aagcattatt gtgtgaaaac ccaagtccgg atcaccgggc ttgcggggct
     6781 tgtgcttctt gtcatttttt tgaacaaggc agtcatccgg atttttacga aatcactccc
     6841 ttgtcggacg aatccgaaaa cgggcgcaaa ctgttgcaga tcaaaatcga tgccgtcagg
     6901 gaaatcatcg ataatgtgta cctgacttcg gtacggggcg gtttgcgcgt ggttctgatt
     6961 catcctgcgg aaagtatgaa tatccaggcc gccaacagtt tgttgaaagt gttggaagag
     7021 cctccgccac aagtggtctt tttgctggtc agccacgcgg cggacaaggt tttaccgacc
     7081 attaaaagcc gctgccggaa aatggttttg cccgcgcctt cccatgaaga ggcattggca
     7141 tatctgcgtg aaaggggtgt ggcggaacct gaggaacgtc tggctttcca ttccggagcg
     7201 ccgctgtttg atgaggcgga cggtgtccgt gcgttgcgga ttaaactgtt ggatattttg
     7261 gcagaaccga ggttgttgaa gattttggat tacgccgcgc ttttcgataa ggaaaaactt
     7321 ccgctcgccg tatttgtcgg gtggatgcag aaatggctgg tcgatttggg attgtgcctg
     7381 caacacatga aacccgtcta ttatcccgct tatgaagaca ggctgcttca gacggcatcc
     7441 ggtttccgcc cgcgcaatgt atttgcggcg gaggatatgc tcaaacagct tgccccctac
     7501 gggtttcata ctttaaatgt caaaatgcag atcgagcatc tgctcatcaa ttatttggaa
     7561 ttgaagaaag agaacgggtg aattatgtca gacggacaaa atattccggc aaaaatgatg
     7621 tcgttgcagc tgaaagacat gaatctgctg tacagctcct atatgccgtt tttggaacat
     7681 ggcggcctgt ttgtgcagac cgacgacgta ttttccatcg gggacgatat tctgcttgcc
     7741 gtagaaatcc tcaacttccc caaactgttc ctgccaacca aggtcgcttg gattaatcct
     7801 gcgcgtactt cctccaaacc caaaggggtt gggctggcat tcacaaaaca cgaaaactgc
     7861 ctgaaagtca aagaccagat cgaagtcgaa ctgggcagca caatcggcgg cagcagacct
     7921 acgtttacca tgtaacgcca tgcatatcat cgattcgcac tgccacctca attttgaagg
     7981 tttgaaagaa cgcctgcccg aagttttgtc caacatggaa gcaaacggcg tggggcaggc
     8041 gctcgccatc agcgtcagta gggaaagctt ctccgaagtc tttgccatcg ccgaagcgca
     8101 cgaacacatc tattgcacca taggcgtaca tcccgacagt aaggaagccg aagaattttc
     8161 cgtcgcggaa atggtcgaag ccgccgccca tccgaaagtg gtcggcattg gcgagacggg
     8221 tttggattat tactggtgca aaggcgattt gtcctggcag cacaaacgct ttgcagacca
     8281 catcgaagca gccaatcaaa ccggactgcc cgttatcgtc catacgcgtg atgcggcggc
     8341 ggataccttg tctatcctga aagaatgccg ggttaattcg ggcgttatcc actgtttttc
     8401 cgaagacatc ggttttgccc gtgcagcaat ggattttggg ctttatattt ctttctcggg
     8461 aatcgttacc tttaaaaacg cacccttggt tcaggaggcg gcaaaatacg ttccggacga
     8521 ccgcattttg gtggaaaccg atgcgccgtt cctcgccccc gttcccaaac gcggcaggca
     8581 gaacgaaccg gcttttgtgc gccataccgc cgaacatatc gccaaattgc gggaccaaac
     8641 attggaacag gttgcggcat atacgacgga aaacttttac cggctgtttc aaaaagtacc
     8701 cgatatgcgg gccgtctgac cctgtgccga cgataaggaa aaccatgaag gcaattcatc
     8761 cgtatgcatg tccgcgctgc tgccggctgc ctgccaacac gtttcggaca ggcatggcaa
     8821 attccgcttc caaattctgc attgccaaag gcggcagacg ggaagtaaaa aaagacgaaa
     8881 gcggcggcgg atatgccctg tgccatttgc cggacagtag gattgtcgag gagtgggaat
     8941 atttccgttc acaacattga tactgcgcga tatacggcaa atattgtggg aagtttccgc
     9001 ttttgcgtat aatgcgccct acctgacaaa ttttgtcaac tttatcaaaa ggaataagcg
     9061 atggcttcca tccacgacca aattaaagaa gtagtaacga cacaccgcgt cgtattgttt
     9121 atgaaaggta cgaagcagtt tccgcaatgc ggtttctctt cccgcgccgt gcaaatcctg
     9181 aacgcggcgg gctgcaccga ttacgttacc gtcaacgtat tggaaaatcc cgaagtacgc
     9241 caaggcatta aggaatacag cgactggccg accatccccc aactttatgt gaacggcgag
     9301 tttgtcggcg gttcggacat cctgatggaa atgtatgagg caggcgagct gcaagagctg
     9361 ctgaaagcct gatggattcg gcaatgccgt ctgaacgtgt ttcagacggc attttctttt
     9421 ccggcaaatc aaaaaaaagt ataatggcgc gtctcaaaat cacactggaa caccgcgatg
     9481 aacgttaatg ttatcaacca tccgctcgtc cgccacaaat taaccctgat gagggaggcg
     9541 gattgcagca cctacaaatt ccggacgctt gccatcgagc tggcgcgcct gatggcatac
     9601 gaggcaagcc gtgattttga aatcgaaaaa taccttatcg acggatggtg cggtcagatt
     9661 gaaggcgatc gcatcaaggg caaaacattg accgtcgttc ccatcctgcg tgcaggtttg
     9721 ggtatgcttg acggcgtact cgacctgatt ccgactgcca aaatcagcgt agtcggactg
     9781 cagcgcgacg aggaaacgct gaaacccgtt tcctacttcg agaaattcgt ggacagcatg
     9841 gacgaacgtc ctgccctgat tatcgacccg atgctggcga cgggaggttc gatggttgcc
     9901 accatcgacc ttttgaaagc caagggctgc aaaaacatca aggcactggt gctggttgcc
     9961 gcgcccgagg gtgtgaaggc ggtcaacgac gcgcatcccg acgttacgat ttacaccgcc
    10021 gcgctcgaca gccacttgaa cgagaacggc tacatcatcc ccggcttggg cgatgcgggc
    10081 gacaagattt tcggcacgcg ctaactgact gattttcgga gttgatatga attttcaaga
    10141 ctatctcgcc acatttcctt caatcgacca tctgggcggt ttggacgttc aggatgccga
    10201 cggcaaaacg gttcaccaca ttcccgccgt tcagggtaag ctcggttcgc tcaagctgta
    10261 caatgctttg gcagaacgtt ttgacggaaa attggataaa gaagcggcag aacagggttt
    10321 gatatggttt gccgaacacg ttgccgacgc gcgcgcccat cccggcaagc atcccaatat
    10381 cgacctgctt gaaaaagttg tgcaaagcgg cgaaaccttg ctgctcaagc cgcttgccgc
    10441 gcaataattt tcgaccatgc cgtctgaaat ccgtttcaga cggcatttta tcggaaagaa
    10501 gaccgtaaaa cgggcatttt cttttctatt tcaggatacg ggcaatgatg tttcaacaca
    10561 caggacgata
//
LOCUS       DAXIFD010000063        10551 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.063, whole genome shotgun sequence.
ACCESSION   DAXIFD010000063 DAXIFD010000000
VERSION     DAXIFD010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10551
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.063"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(144..500)
                     /locus_tag="ACFOCN_001098"
                     /pseudo
     CDS             complement(144..500)
                     /locus_tag="ACFOCN_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688109.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            515..1168
                     /locus_tag="ACFOCN_001099"
     CDS             515..1168
                     /locus_tag="ACFOCN_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element IS1016C family transposase"
                     /protein_id="HFC6970257.1"
                     /translation="MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAALFY
                     RKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRV
                     YTVVVDNAKSETLLPVIKKKIMPDSIVYTNSLSSCDKLDVSGFIHYRINHSKEFADRQ
                     NHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTPSQQLKILRDWCGI"
     gene            complement(1240..1842)
                     /locus_tag="ACFOCN_001100"
     CDS             complement(1240..1842)
                     /locus_tag="ACFOCN_001100"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6970258.1"
                     /translation="MTDVLQTVFYIMLFPRIIAASAQRKLSVYLKKGGLVAYPTESCY
                     GLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPA
                     PKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRAC
                     RTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR"
     gene            complement(1876..3147)
                     /gene="purD"
                     /locus_tag="ACFOCN_001101"
     CDS             complement(1876..3147)
                     /gene="purD"
                     /locus_tag="ACFOCN_001101"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HFC6970259.1"
                     /translation="MKLLVIGNGGREHALAWKLAQSPKVETVFVAPGNAGTAIEPKLQ
                     NIDLTAHQDLIEFCRKENIVFTVVGPEAPLAAGIVDDFRAAGLKIFGPTQYAAQLESS
                     KDFAKAFMAKYNIPTAQYQTFENADAAHDYVNQKGAPIVIKADGLAAGKGVIVAMTLD
                     EAHAAIDDMLLDNKMGNAGARVVIEDFLQGEEASFIVMVDGNNVLPMATSQDHKRLLD
                     GDKGLNTGGMGAYSPAPVVTPVVYERAMNEIILPTVAGMKAEGHEFTGFLYAGLMIDQ
                     SGAPYTIEFNCRFGDPETQPIMSRLNSDLSDLVEAAIDGKLDSVTAEWSPQTAVGVVL
                     AAQNYPETPKKGDIISGLDAANQIGKVFHAGTTAKEKGDVLTNGGRVLCVVGLGDNVA
                     QAKAKAYGALEKISFDGMQYRKDIADKAINR"
     gene            3305..3622
                     /locus_tag="ACFOCN_001102"
     CDS             3305..3622
                     /locus_tag="ACFOCN_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HFC6970260.1"
                     /translation="MQKRIDEIQSKYREWCHLLPQLEEDIRRWKYVVTLIRDMDNFYT
                     HEYQACHQAIEDGVELDLSTEGEYSIMSEDALWNALGEFHQLAWLYLRSSVDALDKYT
                     QED"
     gene            complement(3674..4285)
                     /locus_tag="ACFOCN_001103"
     CDS             complement(3674..4285)
                     /locus_tag="ACFOCN_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HFC6970261.1"
                     /translation="MITTYKTITSSTQAEFKDKGSRFIAFTYPIRTLADVKKYLDLLK
                     EEHHKARHWCYAYRLGVDGVQFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYF
                     GGTLLGVPGLIHAYKEATAQALAVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQAD
                     ILERDLQLDCRLTVSLSLVNYEACVAAWKNTRQIEVNTEKPFE"
     gene            complement(4348..5283)
                     /locus_tag="ACFOCN_001104"
     CDS             complement(4348..5283)
                     /locus_tag="ACFOCN_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HFC6970262.1"
                     /translation="MSVLIIVEHDNKQLNPTTLHAVTAAAKLGKIDLLVAGSGASAVV
                     EFAKQVAGVEKVLVADAAHYAEGLAEELAPLVVKLAVDYCYVAATATTFGKNLLPRVA
                     ALLDVPQISDLTEIVDNTTFVRPIYAGNAFETVQADSEKLVLTFRATVFDAVAAQGGN
                     AEVINVEATPAQNLSRFVNRQLSHSDRPELTQAKVIVSGGRALGSAEKFNEVLTPLAD
                     VLGAAIGASRAAVDAEYAPNDAQVGQTGKVVAPQLYFAIGISGAIQHVAGMQDSKVIV
                     AINKDADAPIFNVADYGLVGDLFEIVPQLTEVLKN"
     gene            complement(5294..6043)
                     /locus_tag="ACFOCN_001105"
     CDS             complement(5294..6043)
                     /locus_tag="ACFOCN_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HFC6970263.1"
                     /translation="MKALVAVKRVVDYNVKVRVKADGSDVDIGNVKMSMNPFDEIAVE
                     EAVRLKEAGKVSEIVAVSLGEKKCEETLRTALAMGADRAIHVETDTKLESLAVAKLLK
                     AVADKENPQIFFLGKQAIDDDANQVAQMLAALLNAAQGTFASKVHIECGEVQIVREID
                     GGEETIALKLPAVISADLRLNEPRFVKLPNIMAAKKKPLEKLTPDDLVADISPRLKTV
                     KFAEPKARQAGVKVASVAELVEKLKNEAKVI"
     gene            complement(6269..7237)
                     /gene="waaC"
                     /locus_tag="ACFOCN_001106"
     CDS             complement(6269..7237)
                     /gene="waaC"
                     /locus_tag="ACFOCN_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HFC6970264.1"
                     /translation="MKILLVRLSSMGDLIHTLPAIEDLARQCPDVELHWLCEAGFTDI
                     ARLHPFVKKIHVMKWRQWRKHLFQAETWREMGHLKQTLRQEAFNFVLDSQGLIKSACF
                     AKMAKSPIYGLDKNSAREGLAALAYAKTYAVPKGKNAVWRNRELFAQVFGYAMPETQV
                     FGLTVPEVGRLKNLAQPYYAALHATSRDSKLWPMENWRSLLQKLNEEQQCNIYLPWGN
                     EDEKTRAKQIADGLPFAIVCDKINLLQAAYLLKYAVGIVGVDTGLLHLANALEKPVVG
                     IYTDTDPIKTGVQVSPIAKNLGNIGQIPTADLVYQTLMDCVAADKG"
     gene            complement(7275..7910)
                     /locus_tag="ACFOCN_001107"
     CDS             complement(7275..7910)
                     /locus_tag="ACFOCN_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HFC6970265.1"
                     /translation="MIVSIDVDAQKTFTPLCPDELPVNEGHLIVEELNAQAALADLRV
                     MTKDAHHMVAKWLVDNPVDMLKPTGLPDADLTWVAHAMVGTRGYELLDGLPSAKEYDY
                     CVWKGVDPELHPYGACFHDIEEKLSTGLIEWLRCQNTDTVIIGGLATDYCVKTTVLQL
                     LKGGNWQVIVNEAACRGIAPDTIETAWQEMSSAGAVILKNAEEIKKYINNQ"
     gene            8025..8705
                     /gene="tsaA"
                     /locus_tag="ACFOCN_001108"
     CDS             8025..8705
                     /gene="tsaA"
                     /locus_tag="ACFOCN_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HFC6970266.1"
                     /translation="MTYTITPIGTARSPYKQKFGIARQPGLVSAAEVCIELNPEFTAD
                     SVRGLEDFDYVWISFIFHGVLDEGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSL
                     LKLNRIETGKPVRLYCSGADLLDGTPIVDIKPYIPFVESKPDAASGFVSGKPVELEVV
                     WQENIGAENLSANTKNLISQSIAQDPRPAYQNIPERIYVMNIADYEIRFQIEENRATV
                     IDLSPTPL"
     gene            8774..8893
                     /locus_tag="ACFOCN_001109"
                     /pseudo
     CDS             8774..8893
                     /locus_tag="ACFOCN_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(8963..9967)
                     /gene="gap"
                     /locus_tag="ACFOCN_001110"
     CDS             complement(8963..9967)
                     /gene="gap"
                     /locus_tag="ACFOCN_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6970267.1"
                     /translation="MSIKVAINGFGRIGRLALRQIEKAHDIEVVAVNDLTPAEMLLHL
                     FKYDSTQGRFQGTAELKDDAIVVNGKEIKVFANPNPEELPWGELGVDVVLECTGFFTN
                     KTKAEAHIRAGARKVVISAPSGNDVKTVVYGVNQDILDGSETVISAASCTTNCLAPMA
                     AVLQKEFGVVEGLMTTIHAYTGDQNTLDAPHRKGDLRRARAAALNIVPNSTGAAKAIG
                     LVIPELNGKLDGSAQRVPVATGSLTELVSVLERPVTKEEINAAMKAAASESYGYNEDQ
                     IVSSDVVGIEYGSLFDATQTRVMTVGGKQLVKTVAWYDNEMSYTCQLVRTLEYFAGKI
                     "
     gene            10411..>10551
                     /locus_tag="ACFOCN_001111"
     CDS             10411..>10551
                     /locus_tag="ACFOCN_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HFC6970268.1"
                     /translation="MSKSAVSPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAA
                     KLL"
BASE COUNT         2865 a         2695 c         2171 g         2820 t
ORIGIN      
        1 ctctaaaaaa taatcgcttg ttttgacacc gatacactca tatagtggat taacaaaaat
       61 caggacaagg cgacgaagcc gcagacagta caaatagtac ggcaaggcga ggcaacgccg
      121 tactggttta aatttaatcc actatacaaa tacagaaact caagaaaata accttgtgta
      181 ttaaccatct caagcaattc agaaaaatca agaaattttc tgaccgtaaa caaacgtttc
      241 cctaaaaaaa cgatgtcttc aaaaatatcg accaaataat catcttcgcc gttttcattt
      301 ttatgggtta aaacaacacg ggaaaaatct gttttcagat gcttgcccgc ttgattgttc
      361 ggattattgt ccggaacgac aaaaccgtcc tcaaaatcaa agcagacgtt gcgtccttct
      421 acctttatct ctgtgcaata acaatcatgc agagaaatac catccgaaaa atttaggggc
      481 tgtactagat tagcagatat gttaccctcg aaatatgaag ataacgcact gcaaattaaa
      541 gaaaaaagta cagaaagaac tgctccgttt ttttgtgctg gaagttaccg cccgttctgc
      601 cgccgatatt ttgggtatcc atcccaattc ggcagcactg ttctaccgta aaatccgcac
      661 ggttatcaac catcatttgg ccttggctgc cgatgaggtt tttgagggcc ctgtcgagcc
      721 ggacgaaagc gatttcggcg gacggcgtaa aggcagacgt ggtcgcggtg cggcaggaaa
      781 agtggttgtc ttcggcattc tgaaacgcaa cggacgggtc tataccgttg tggtggataa
      841 tgccaagtct gaaacgttac tccctgtcat caaaaagaaa atcatgccgg acagcattgt
      901 ttataccaat agtctgagca gctgcgacaa gttggacgtg agcggtttta tccattaccg
      961 cattaaccat tccaaggagt ttgcagaccg tcaaaaccac attaacggca ttgagaactt
     1021 ttggaatcag gcaaaacgcg tcttgcgaaa atacaatgga atcgatcgca aatctttccc
     1081 gctgttcttg aaagaatgcg aatttcgatt taacttcggc acaccgtctc aacagcttaa
     1141 aatcctgcgg gattggtgtg ggatttaggg ctaatctagt acagccccaa aattttttct
     1201 ttgtgtatgc aaaaaaagtt ttcattcgaa tacccatatc taacgcaaac gtttacctgt
     1261 ttccccgtca ataatctgac tcggcgattt ctgcctgccg attctcccac caacaatcca
     1321 cacatcgcgt ccgaattgcc ttctgacttc cctctccgtc cgacacgcgc gtttgcctgc
     1381 gcggttgcac gaagtcgaga ccaaaggcgt ttgcaaagcc tgacacaagc ggcgcgcacc
     1441 tacatgggcg ggaaccctga ccgccaactt gctgcgctgt ttcccgcgca actcaggtaa
     1501 gacacaggat ttggcggata ataggaacgt tttaggggcg ggccattctt ttctaagcat
     1561 atcctgcaga ttttcagacg gcatttgaag taaaggctgc aattgctcaa attgattccc
     1621 gatgacaatc atacccttgt gttgcggtct ttttttcaaa tgcgccaact taccgagtgc
     1681 tttggctaat gtcggaagac accccaagcc ataacaagat tcggtcggat aagcgaccaa
     1741 accgcctttt ttcaaataaa cgcttaactt acgttgcgct gatgctgcga taattctcgg
     1801 aaataacata atataaaata ccgtctgaag cacatcagtc atacttggct tcagacggca
     1861 tcatcctctt tctagttaac ggttaatcgc tttatcggca atgtctttac ggtattgcat
     1921 cccgtcgaaa ctgatttttt ccaacgcgcc atatgcctta gctttcgctt gcgccacatt
     1981 gtcgcccaat cccacaacac acaatacgcg tccgccgttg gtcaatacgt cacctttctc
     2041 ttttgccgtt gtacctgcat ggaaaacttt gccgatttgg ttggcagcat ccagaccgga
     2101 aataatatcg ccttttttgg gcgtttcggg gtaattttgc gccgccagta ccacgcccac
     2161 ggcagtttgc gggctccatt ccgcggttac gctatcgagt ttgccgtcta ttgccgcttc
     2221 aaccaaatcc gataagtcgc tgttcagtcg gctcataatc ggctgggttt caggatcgcc
     2281 gaaacggcag ttaaactcaa tcgtataggg tgcaccgctt tgatcaatca tcaaacctgc
     2341 gtacaggaaa ccggtgaact catgcccctc cgctttcatc cctgctacgg tcggcaaaat
     2401 aatttcattc atcgcgcgtt cgtacacaac aggcgttacc acaggcgcag ggctgtacgc
     2461 acccataccg cccgtattca gacctttgtc gccgtctaaa agacgcttgt ggtcttggct
     2521 ggttgccata ggcagtacat tattgccatc aaccatgacg ataaaactcg cttcttcgcc
     2581 ttgcaggaaa tcttcaatta caacacgcgc gccggcattg cccattttgt tgtccagcag
     2641 catatcatca atcgcagcat gcgcttcatc caaagtcatc gccacaatca cgcctttacc
     2701 tgccgccaaa ccatcggctt tgataacgat aggcgcacct ttctgattga cgtaatcatg
     2761 tgcggcatcg gcgttttcaa aggtttgata ttgcgcggtc ggaatattgt atttcgccat
     2821 aaatgctttg gcgaaatctt tggaactttc caactgcgcc gcatattgtg tcggaccgaa
     2881 tatttttagt cctgcagcac ggaaatcatc cacaatacct gccgccaaag gcgcttcagg
     2941 gccgacgacg gtaaaaacaa tattttcttt acgacagaat tcaatcaaat cctgatgcgc
     3001 agtcaagtcg atgttttgca acttgggttc aatcgctgta ccggcattac caggcgcaac
     3061 aaatactgtt tccactttag gcgactgcgc caatttccaa gccagcgcgt gttcgcgacc
     3121 gccattaccg ataaccagca gtttcatacc atctccttga caaatatgta cttttaacga
     3181 aaactcgata caaagggact tttatcccat ctgaagaaat tttagtagaa tcaaacaaaa
     3241 gaccgcttca ttccactctg caacctattc aacttatcca taaattaaaa aaggacaagc
     3301 aaccatgcaa aaacgtattg atgaaatcca aagcaaatac cgcgaatggt gtcatttact
     3361 accgcaactg gaagaagaca tccgccgttg gaaatatgtc gtcactttaa ttcgcgacat
     3421 ggacaatttc tatacccacg agtatcaggc gtgtcatcag gctattgaag acggggtaga
     3481 actggatttg agtacggaag gcgaatacag cattatgagt gaagatgcgc tatggaacgc
     3541 gctgggcgaa ttccatcaat tggcttggtt atatttgcgc tccagcgtcg atgccttaga
     3601 caaatataca caagaagatt agtcagcgaa gaggtcgtct gaaataccat cacaaagcat
     3661 ttcagacgac ctttcattca aaaggctttt ccgtatttac ttcaatctgc cgagtattct
     3721 tccaagccgc aacacaggcc tcataattta ccaacgacaa actgaccgtc aatcggcaat
     3781 ccaactgcaa atcccgctcc aatatatccg cctgatattg tttggcaatg cgtatcgctt
     3841 cattcaaaaa cggatattca catttcagcc aaacagtttt ttcaatattc ttttcaacta
     3901 cttctgcaac tgccaacgct tgagccgtcg cctctttgta cgcatgtatc agacctggaa
     3961 cacctaacaa agtaccaccg aaatagcgga cgaccacaac caaaacgtcg gtaataccca
     4021 ccgaatcaat ctgtcccaaa attggtcgtc cagcacttcc tgatggctct ccatcatcgt
     4081 tggcacgaaa ttgcacacca tccacaccca aacgataggc atagcaccag tgtcgtgctt
     4141 tatgatgctc ttcctttaac agatcgaggt attttttcac atcagccaat gtccgaatcg
     4201 gataggtaaa tgcaataaaa cggctgcctt tatctttaaa ctcagcctgc gtcgaggaag
     4261 taatggtttt ataagtcgta atcatgctga aatgttttca gacgacctca ttaataacaa
     4321 ggtcgtctga aagtttcacg tgaaacatca atttttcaat acttctgtta attgtggaac
     4381 gatttcaaat aaatcgccaa ccaatccgta atcggctaca ttgaaaatcg gcgcatcagc
     4441 atctttattg attgcaacaa tcaccttact gtcttgcata ccggcaacgt gttgaattgc
     4501 acctgaaata ccgattgcaa aatagagttg cggcgcaacc actttaccgg tttgtccgac
     4561 ttgagcatcg tttggcgcat attcggcatc aactgctgca cgggatgcac cgattgccgc
     4621 acctaaaaca tccgccaacg gtgtcagcac ttcattgaat ttttccgcac tacccaacgc
     4681 acgaccaccg gaaacaatca cttttgcctg agtcagttca ggacgatcgg aatgggaaag
     4741 ctgacggtta acaaaacgac tcaggttttg ggcaggggtt gcttcaacat taattacctc
     4801 agcattacca ccttgcgccg ccactgcgtc aaaaaccgtc gcacggaagg tcagcaccaa
     4861 tttttctgaa tcagcttgca cggtttcaaa tgcattaccc gcataaatgg ggcgcacaaa
     4921 agtcgtgtta tccacaattt cggtcaaatc agaaatttgc ggtacgtcta ataaggctgc
     4981 tacgcgaggc aaaaggtttt taccgaatgt agttgccgtt gctgcaacat agcagtaatc
     5041 cactgccaat ttaacaacca gcggagccaa ctcttcagcc aaaccttcgg cataatgggc
     5101 agcatctgca accaaaactt tttccacacc cgccacttgt tttgcgaact ctaccacagc
     5161 agatgcaccg cttccggcaa ccaataaatc gattttaccc agcttagcgg cagcggtaac
     5221 agcatgcaaa gtggtaggat tcaactgttt gttgtcgtgt tcgacaataa tcaatacact
     5281 catttcagcc tcctcaaatc actttggctt cgtttttcaa tttttcaacc aattcggcaa
     5341 cgcttgctac ttttacgcct gcctgacgcg ccttaggttc ggcaaatttc accgttttca
     5401 aacgaggtga aatgtcggca accaaatcgt caggagtcag tttttccaaa ggttttttct
     5461 ttgccgccat aatattgggg agtttgacaa agcgcggctc gttcaaacgc aaatcagcac
     5521 tgataacagc aggcagtttt aatgctatgg tttcttcgcc gccatcaatt tcgcgcacaa
     5581 tctgtacttc accacattca atgtgtactt ttgaagcaaa cgtaccttgc gccgcattca
     5641 gcaaagctgc cagcatttgc gccacttgat tggcatcatc atcaatcgct tgtttgccca
     5701 aaaagaaaat ttgcggattt tctttgtccg caacggcttt cagcaactta gcaacggcca
     5761 gagactccag tttagtatcg gtttcaacat gaatggcacg gtcggcaccc atcgccaaag
     5821 ctgtacgcaa ggtttcttcg cattttttct cacccaaaga aaccgctacg atttcgctta
     5881 cttttccggc ttctttcaaa cggacagctt cttccacagc gatttcgtca aacggattca
     5941 tcgacatttt gacattgccg atatccacat ccgaaccatc ggcttttaca cgaactttga
     6001 cgttgtagtc cactacgcgc tttactgcga ccagtgcttt cattgaaccc tcctaaaaag
     6061 aacgctgctt tcaccatcca gcgaaaccaa accttcttcc ctataaaacc aaatccgttt
     6121 tccttaaaaa cgaattcatt caaaaatctt tcggataatg cttgccgatt ataccatttt
     6181 taaagcattt actcaggctg gtagatatac attcttatgc ttaacaaact gaaaaatatc
     6241 aggtgctata tcagtttcag acaacccttt agcctttgtc tgctgcaaca caatccatca
     6301 acgtttgata aaccaaatct gcggtcggaa tctgcccgat attgcccaaa ttttttgcaa
     6361 ttggcgaaac ctgaacgcct gttttaatcg gatcggtatc ggtataaatg ccgaccacag
     6421 gtttttccaa ggcatttgcc aaatgcagca aaccggtatc cacgccgaca attccgaccg
     6481 cgtatttcag cagatacgct gcctgcaata aatttatttt gtcgcacaca atagcaaacg
     6541 gcagtccgtc tgcaatctgt ttggcacgcg ttttttcatc ttcatttccc caaggcaggt
     6601 aaatattgca ttgctgttct tcattcaact tttgcagcaa cgaccgccag ttttccatag
     6661 gccataactt actgtcccga ctggtcgcat gcaaagccgc ataatacggc tgcgctaaat
     6721 ttttcagacg gcctacctca ggaacagtca agccaaatac ctgcgtttca ggcatcgcat
     6781 acccaaatac ttgggcgaac agctcacgat tgcgccaaac agcatttttc cctttcggta
     6841 cagcgtatgt tttcgcatac gccagcgcag ccagtccctc gcgcgcgcta tttttatcca
     6901 aaccataaat aggggatttc gccattttag cgaaacacgc gcttttaatc agaccttgac
     6961 tgtccaatac aaaattaaat gcttcctgcc gcaaagtctg tttcagatga cccatttccc
     7021 gccaagtttc agcctgaaag agatgtttgc gccattgccg ccatttcatc acatggattt
     7081 ttttcacaaa cggatgcagg cgcgcaatat ctgtaaatcc agcttcacac agccaatgga
     7141 gttctacatc agggcattgt cgcgccaaat cctcaattgc gggcaaagtg tgaattaaat
     7201 cgcccatact agacaaacgg acaagcaaaa ttttcatatt ttaagaagta tgtttcacgt
     7261 gaaacaattt taacttattg attattaata tattttttaa tttcttcagc gttttttaag
     7321 atgactgcac cggcagaact catttcctgc catgccgttt caatggtatc cggcgcaatg
     7381 ccccgacaag ccgcttcatt gacgataacc tgccaattac cacctttaag taactgcaaa
     7441 accgttgttt taacacaata atccgtagct aacccaccga taataaccgt atccgtattt
     7501 tgacaacgca gccattcaat cagccctgtg cttagttttt cctcaatatc gtgaaaacac
     7561 gcgccgtaag gatgcaattc aggatcaaca cctttccaaa cgcaataatc atattcttta
     7621 gcagaaggca gtccgtccaa taattcatag ccgcgcgtac cgaccatcgc atgagccacc
     7681 caagtcaaat ccgcatcagg caaacctgtc ggcttcaaca tatcaacagg gttatccaca
     7741 agccatttcg ctaccatatg atgcgcatct ttcgtcatca cgcgcaaatc cgccaaagcg
     7801 gcttgagcat tcaactcctc gacaatcaaa tgcccctcgt tcacgggcag ttcgtcagga
     7861 cacagtggcg taaacgtttt ttgtgcatca acatcaatgg aaacaatcat ctcattattt
     7921 caacgcgatt aaaatgccct gtattataac aaattactgc ccaaaaacgg taaaaccgat
     7981 tgtgataaga taaggttttt ccaaaaaaac ttatccacaa ccttatgact tataccatta
     8041 cccccatcgg caccgcccga tcgccctaca aacagaaatt cggcatcgcc cgccagcccg
     8101 gtttagtctc cgccgcagaa gtatgcatcg agctgaatcc cgaatttacc gcagacagcg
     8161 tgcgcgggct ggaagatttc gattatgtgt ggataagttt tatttttcac ggcgtattgg
     8221 atgaaggctg ggcacaaatg gtgcgcccac cacggctcgg cggcaaacaa aaaatgggcg
     8281 tattcgccac gcgcagcccc caccgcccca accatctcgg actatcactc ttaaaactca
     8341 accgcatcga aaccggcaaa cccgtccgcc tttattgcag cggcgcagac ctgctcgacg
     8401 gcacgccgat tgtggacatc aagccttata tcccctttgt cgaatccaaa cccgatgccg
     8461 catctggttt cgtcagcggc aaacccgtag agttggaagt cgtttggcag gaaaacatcg
     8521 gcgcggaaaa tttatctgca aacaccaaaa accttatcag ccaaagcatt gcccaagatc
     8581 cgcgccccgc ctatcagaat attcccgaac ggatttatgt gatgaatatt gcggattacg
     8641 aaatcagatt tcaaatcgag gaaaaccgtg caaccgttat tgatctttcc ccaaccccgc
     8701 tttaaatcgg gcaaaaatcc ggttttgccg catagcagtt gaacaaacgg ctgttgtttg
     8761 ttcgccataa gccgcaatat caagttatag cggattgaat ttaaatcagg acaaggcaac
     8821 gaagccgcag acagtacaaa tagtacggca aggcaaggta acgccgtact ggtttaaatt
     8881 taatccacta tacagataaa caatgccgtc tgaacgcaat gtgttcagac ggcatttact
     8941 tatccacagg tttgttcaag ccttagattt tgcctgcgaa gtattccaaa gtgcggacga
     9001 gttggcaggt gtaggacatt tcgttgtcgt accaggcaac agttttcacc aattgtttgc
     9061 cgcccacggt catcacgcgg gtttgggtcg catcgaagag cgaaccgtat tcgatgccga
     9121 caacgtcgga agaaacaatt tgatcttcgt tgtagccgta agattcgctg gcggcggctt
     9181 tcatcgcggc gttgatttct tctttggtta cagggcgttc gaggacggaa accaattcgg
     9241 tcagcgagcc ggtggcaaca gggacgcgtt gggcggagcc gtcgagtttg ccgttcaatt
     9301 cagggataac cagaccgatg gccttggcgg caccggtgct gttgggcacg atgttgagcg
     9361 cggcggcgcg ggcgcggcgc aaatcgcctt tgcggtgcgg cgcgtcaagg gtgttttggt
     9421 cgccggtgta ggcgtggatg gtggtcatca ggccttcgac tacgccgaat tccttttgca
     9481 ggactgccgc catcggggca aggcagttgg tggtgcagga agcagcggag ataacggttt
     9541 cgctgccgtc caaaatgtct tggtttacgc catatacgac ggttttcaca tcattgccgc
     9601 taggtgcgga aatcacgact ttgcgcgcgc cggcacggat gtgggcttcg gctttggttt
     9661 tattggtaaa gaagccggta cattcgagga cgacatccac acccaactcg ccccaaggca
     9721 attcttcggg attcggattg gcgaaaactt tgatttcttt gccgtttacc acgatggcat
     9781 cgtcttttaa ttcggcagta ccttggaaac ggccttgcgt gctgtcgtat ttgaaaaggt
     9841 gcagcagcat ttcggcaggg gtcaggtcgt tgacggcgac gacttcgatg tcgtgggctt
     9901 tttcaatttg acgcaatgcg aggcggccga tgcggccgaa accgttaatc gctactttaa
     9961 tgctcatgta tatactccaa gctgtgaaac gaaatttcaa tacctgtatt gtattctgaa
    10021 ataaagttac attccactat tacatctaac tacttgatgc ttatttgata tagatgaatt
    10081 ttactgtttg cacagatttc caaaactttt accatcaata tttgaattta aaattttaat
    10141 gatgattttg atgattgcca acctgcttgt gcgtaagtag caaatatcca atattttcat
    10201 tacctttttg tcaaataagt ttgagtttaa gacttgctgt ataagacaga taagcgtgga
    10261 tgttttttga cttaataata tttctgtgga taactttgct gttttcctag ttgtctccac
    10321 aaccttattg acaggcttac ggtcagtctc attccgtcga agacaaaacc ttttgctaca
    10381 ataccgtttt cctaatgata aggcagcccc atgtccaaat ccgccgtttc cccaatgatg
    10441 cagcaatacc tcggcatcaa agcgcaacat accgacaaac tggtgtttta ccgtatgggc
    10501 gatttttacg agatgttttt cgacgatgcg gtagaagcgg caaaactttt g
//
LOCUS       DAXIFD010000064        10290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.064, whole genome shotgun sequence.
ACCESSION   DAXIFD010000064 DAXIFD010000000
VERSION     DAXIFD010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.064"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(84..1175)
                     /locus_tag="ACFOCN_001112"
     CDS             complement(84..1175)
                     /locus_tag="ACFOCN_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6970269.1"
                     /translation="MNAQTLIANVAEFVKTKLKPIVDDIDRKGYYPEAFMRELGAIGG
                     FGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFSAWCQAACAWYLHQTPNRAVKDK
                     YLADILQGKVLAGTGMSNTVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIW
                     ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPE
                     QFADYIQSIKAGFILLQIGIGAGVIDGSLGIIRLANVVNAEVNRYLDDGYDSLKTRLD
                     GAWAETERLAGLAWSGTPDNLTTLKLREAAAVLTLAAAQSAALHSGAKGYLMRSPAQR
                     RVREAMFVAIVTPAIKHLRKEIAAIEAAK"
     gene            complement(1310..1858)
                     /locus_tag="ACFOCN_001113"
     CDS             complement(1310..1858)
                     /locus_tag="ACFOCN_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6970270.1"
                     /translation="MARLTVHTLETAPEAAKARVEAVLQNNGFIPNLIGVLSNAPEAL
                     AFYQEVGKLNAANSLTAGEVEVIQIIAARTNQCGFCVAGHTKLATLKKLLSEQSVKAA
                     RALAAGEFDDAKLGALAAFTQAVMAKKGAVSDDELKAFFDAGYNQQQAVEVVMGVALA
                     TLCNYVNNLGQTEINPELQAYA"
     gene            complement(2013..2384)
                     /locus_tag="ACFOCN_001114"
     CDS             complement(2013..2384)
                     /locus_tag="ACFOCN_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2628 domain-containing protein"
                     /protein_id="HFC6970271.1"
                     /translation="MKPYKIYTHPALPPQAVKQGWSWPGLLFGTLWACFKRMWGLGLG
                     LTGAIFVLAVFAQLVYGDTPATDSAFNVLGLAVSVWFGAKGNSLYARHLLSRGYTELP
                     ETVEAANPQAALAQYFGRGGR"
     gene            complement(2440..2547)
                     /locus_tag="ACFOCN_001115"
                     /pseudo
     CDS             complement(2440..2547)
                     /locus_tag="ACFOCN_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(2679..4370)
                     /gene="dld"
                     /locus_tag="ACFOCN_001116"
     CDS             complement(2679..4370)
                     /gene="dld"
                     /locus_tag="ACFOCN_001116"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_process: GO:0006089 - lactate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HFC6970272.1"
                     /translation="MSASQLLSRLTQTVGEKYIITDPAKTEQYRQGYRFGEGKALAVV
                     RPGSILEMWKILQACVEADVIVITQAANTGLTGGSTPDGNDYDRDIVIVNTMRMNIIQ
                     TINNNEQVVCLPGSTLNQLELLLKPLGREPHSVIGSSCIGASVLGGVCNNSGGALVQR
                     GPAYTEMALFAQINEEGRLELVNHLGIDLGDTPEEILTNLQGHHYQNKDIKQDAGKGH
                     DHAYCEHVRQVDEPTAARFNADPARHYEASGCAGKLMVFAVRLDTFPQEKQTAVFYIG
                     TNDINELTDIRRAALGEFESLPVSGEYIHRHAFDIADVYGKDTFYVIKKFGTHQLPKL
                     FDLKARVDRFGKKASFLPKHFSDKAMQFVSKYLPDHLPKSMRDYRDKYEHHLILKMGG
                     KGVDEARAFLKEYFAHHSGAFFECNAEETQAAMLHRFAVASAAIRYRAVHDDEVEDLV
                     ALDIALRRDDRDWFEKLPSEIDNKIIHKLYYGHFMCHVFHQDYIIKKGNDCMALEHEM
                     LHLLDQRGAQYPAEHNVGHLYEAKPALKQFYRKLDPTNSFNPGVGKTSKKKNWAE"
     gene            complement(4538..4634)
                     /gene="ffs"
                     /locus_tag="ACFOCN_001117"
     ncRNA           complement(4538..4634)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACFOCN_001117"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            4895..8728
                     /locus_tag="ACFOCN_001118"
     CDS             4895..8728
                     /locus_tag="ACFOCN_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3683 domain-containing protein"
                     /protein_id="HFC6970273.1"
                     /translation="MTTTTAPQRIREIPYNYTSYTDREIVIRLLGDEAWQILQDLRGQ
                     RKTGRSARMLFEVLGDIWVVVRNPYLVDDLLEHPKRRAALVREMRHRLNEIRKRRDDN
                     RQVDVLVAAAEKAVERFDSSFDETSQKRRQILERLSKITKPHNIMFDGLARVTHVTDA
                     TDWRVEYPFVVVNPDTEAEVAPLVRALIELDLVIIPRGGGTGYTGGAIPLDAMSAVIN
                     TEKLDKHRGVEYVELAGLDGKHPIIRCGAGVVTRRVEETAHQAGLVFAVDPTSADASC
                     VGGNVAMNAGGKKAVLWGTALDNLAYWQMVNPQGEWLRIERVRHNFGKIHDEETAVFD
                     VHTLDSDGLNIVKTERLEIPGHKFRKVGLGKDVTDKFLSGLPGVQKEGTDGIITGVAF
                     VLHKMPKYTRTVCMEFFGTVATATPSIVEIRDFLLAHDSVRLAGLEHLDWRYVRAVGY
                     ATKAAGKGRPKMVLLADVVSDDEAAVEAAAEHICELARARDGEGFIAVSPEARKTFWL
                     DRSRTAAIAKHTNAFKINEDVVIPLERLGEYSDGIERINIELSIQNKLKLCAALEQYL
                     SGKLPIDKMGTDLPTAELLGERGKHALAHVAAVKERWDWLLANLDTPLADYKARYGAA
                     VHAAPEAKDNESCFTAFRDFRLRVSVKADVMKPLAEIFSGKTDTKIIQGLGKIHAKTV
                     RGRVFVALHMHAGDGNVHTNIPVNSDDAEMLQTAYRSVERIMKIARSLGGVISGEHGI
                     GITKLEFLSDEEMQPFWDYKNQVDPKHTFNRHKLMKGSDLRNAYTPSFELLGAESLIM
                     EKSDLGTIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILGVGLLTEAFLYEEQT
                     RRGVSVKHFEELMDIGDHCTVCHRCVKPCPVNIDFGDVTVAVRNYLADSGHKRFAPAA
                     AMGMAFLNATGPKTIKALRAAMIQTGFPAQNFAYKIGKLLPIGTKKQKAEPKATVGKA
                     PIKEQVIHFINRPLPKSVPAKTPRSLLGIEDGKSIPIIRNPAAPEDAEAVFYFPGCGS
                     ERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNNRVAFHRM
                     ANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPGCRIIDIHEYLLEKGVKLDGVQGQQ
                     YLYHDPCHTPIKTMNATQMASSLMGQKVVLSDRCCGESGMFAVKRPDIATQVKFRKQE
                     EIEKNLKELPQGEPVKMLTSCPACLQGLSRYTDDNNMPADYIVIEMAKHILGENWLDE
                     FVKKANNGGVEKVLL"
     gene            8805..9806
                     /locus_tag="ACFOCN_001119"
     CDS             8805..9806
                     /locus_tag="ACFOCN_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HFC6970274.1"
                     /translation="MIDGQTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSE
                     FVRITHTVHSRSIWLKYVPEIANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGAN
                     KIDLNFGCPAPTVNKHKGGAILLKEPELIFHIVKTLRGRLPAHIPLTAKMRLGYEDKS
                     RALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIRDSVNIPVTANGDVFSLQ
                     DYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELC
                     LTKEANNKYPIARLKQWLGMMKKTFDPAQTLFDRVRTVKDADEVRRILNAFEHEINV"
     gene            complement(9868..10050)
                     /locus_tag="ACFOCN_001120"
     CDS             complement(9868..10050)
                     /locus_tag="ACFOCN_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970275.1"
                     /translation="MFWYVIGFCSFVVALLSLWVNVGAFGMQEDDTPQSDYEKRLGLG
                     AKLKNKNTPDTEEKQQ"
     gene            complement(10099..>10290)
                     /locus_tag="ACFOCN_001121"
     CDS             complement(10099..>10290)
                     /locus_tag="ACFOCN_001121"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970276.1"
                     /translation="VDVFGNHGLGGLLEEGAHEKSPKCLSRNLGDFEEFCKGLYLYCL
                     RLAALSLFKFNSLYLPVRL"
BASE COUNT         2331 a         2816 c         2807 g         2336 t
ORIGIN      
        1 ccgatggatt cctgttgcgt tgggggctgg attcccgctt tcgcgggaat gacgcgatgg
       61 gggtttcggt tttttccgcc tgtttatttt gcggcttcga ttgccgctat ttctttgcgg
      121 aggtgtttga tcgcgggagt tacgatggcg acaaacattg cttcgcggac gcgcctttgg
      181 gcgggactcc gcatcaggta gccttttgcg ccggaatgca gggcggcgga ttgggcggcg
      241 gcaagtgtca gtacggcggc ggcttcgcgc agcttgaggg tggtaaggtt gtcgggcgtg
      301 ccgctccaag ccaatccggc gagccgttcg gtttctgccc acgcgccgtc cagccttgtt
      361 ttgaggctgt cgtagccgtc gtcgagatag cggttgactt cggcgttgac gacgttggcg
      421 aggcggatga tgccgaggct gccgtctatc acgcccgcgc cgatgccgat ttgcaggagg
      481 ataaagcctg ctttgatgct ttggatgtag tcggcaaact gttcgggcgc ggcgatgatg
      541 tcttcgtcgg ggataaatac gtctttgaag ttcaggctga aggtgcgcgt gccttcgagg
      601 gcgcaaaatt cggggcagtt ttgcaggctt acgccttccc attgtccgcc tgtgatgaac
      661 atgacgtagc cgccgccgat ttgggcggta ttcgcccaaa tgtggtcttc gccgatgttg
      721 gacacccacg gcagcgcgcc gttgactgtg tagccgccct ccacgcgctc ggcttggagg
      781 ttgtgttttt cgatgtcggc aaggtgtttg acggtattgg acatgcccgt acccgccaat
      841 actttgcctt gcaggatgtc ggcaaggtat ttgtctttga cggcccggtt gggcgtttgg
      901 tgcagatacc acgcgcaagc cgcctgacac cacgcactga aagaggttgc gccgcattct
      961 ttgccgattt cgcgcaatac ggcgatttgc gttgccaaac ccaagccgtt gccgccttcg
     1021 gcttctgtac cgactgcgcc gaatccaccg attgcgccga gttcgcgcat aaatgcttcg
     1081 gggtagtatc ctttgcggtc gatgtcgtcc actatgggtt tgagcttggt tttgacgaat
     1141 tcggcaacgt tggcaatcag ggtttgggcg ttcatctttg ttccttaagg tttgcgggga
     1201 aatcgggggc gcgcctgatg cgcggctgct tccctgccgc ttaggcggct tgtttttgtt
     1261 tgagggggtg tttttgaaaa accgcccgat attcgggcgg tttgccgtat caggcgtaag
     1321 cctgcaattc ggggttgatt tcggtttgtc cgaggttgtt gacgtagttg cacaaagttg
     1381 ccaaggctac gcccatcacg acttcaactg cctgctgctg gttgtagccc gcgtcgaaaa
     1441 atgctttgag ttcgtcatcg gataccgcgc cttttttcgc cattacggct tgggtgaagg
     1501 cggcgagcgc gccgagtttg gcatcgtcaa attcgcctgc tgccaaagcg cgcgcggctt
     1561 tgacggattg ttcggacagg agttttttca gggttgcgag tttggtgtgc cctgccacgc
     1621 aaaaaccgca ttggttggta cgggcggcga tgatctggat gacttcgact tcgccagcgg
     1681 tcaggctgtt ggcggcgttg agcttgccga cttcttggta aaacgccaag gcttcggggg
     1741 cgtttgataa tacgccgata aggttgggga taaagccgtt gttttgaagt accgcctcga
     1801 cgcgcgcttt ggcggcttcg ggggcggttt cgagggtgtg tacggttaaa cgtgccattt
     1861 tctttccttg ttcgcaaata ttgggtacgg gcgcatggta tgcatttcgg aacggaatag
     1921 gaaagactga ttggttatgt gctgcaaaca aaaggttata agaaatgccg tctgaacatt
     1981 tttcagacgg catgatggaa aagaaaacgc gcttatcggc ccccgcgccc gaaatattgc
     2041 gccaatgcgg cttggggatt ggctgcctca accgtttcgg gcaattcggt atagccgcgc
     2101 gataaaaggt ggcgtgcata aaggctgttg ccctttgcgc cgaaccagac ggaaaccgcc
     2161 aagcccaata cgttaaacgc cgagtctgtg gcgggcgtgt cgccgtaaac cagttgggca
     2221 aacaccgcca gcacgaatat cgcgcccgtc agccccagcc ccaaacccca cattcttttg
     2281 aaacacgccc acagcgtgcc gaacaaaagg cccggccacg accagccttg tttgacggct
     2341 tggggcggca gggcgggatg ggtgtagatt ttgtatggtt tcatcgtgtt tccttttcgg
     2401 ttgaaaccct gccctttggg aaggtaggat cagactttat agtggattaa atttaaacca
     2461 gtacggcgtt acctcgcctt gccgtactat ctgtactgtc tgcggcttcg ttgccttgtc
     2521 ctgatttaaa tttaatccac tatatttggg aggcgcgcgc gcctgtgccg gcatacggct
     2581 tgaaagcgat tacccgatgg ggaacttcaa acccgacaat gccgtctgaa cggcgttttg
     2641 ccttcagacg gcattgcctg ccttcaaagc ggacgcgctt attccgccca gtttttcttt
     2701 ttgctggttt tgcctacgcc cgggttgaag ctgttggtcg ggtcaagttt gcggtaaaac
     2761 tgtttgagcg cgggtttggc ttcatacaaa tgaccgacgt tgtgttcggc gggatattgc
     2821 gcgccgcgtt ggtctaaaag atgcagcatt tcgtgttcca acgccatgca gtcgttgcct
     2881 tttttgatga tgtaatcctg atggaaaacg tggcacatga aatgtccata gtagagttta
     2941 tggatgattt tattgtcgat ttccgacggc agtttttcaa accagtcgcg atcgtcgcgg
     3001 cgcagggcga tgtcgagcgc gaccaagtct tccacttcgt catcatgcac ggcgcggtag
     3061 cggatggcgg cggaggcgac ggcgaaacgg tgcagcatcg cggcttgggt ttcttcggcg
     3121 ttgcactcga aaaacgcgcc gctgtggtgt gcaaaatatt cttttaagaa cgcgcgcgcc
     3181 tcatccacgc ctttcccgcc cattttcaga atcaggtggt gttcgtattt gtcgcggtaa
     3241 tcgcgcatgg atttgggcag gtggtcgggc aggtatttgc tgacgaactg catggccttg
     3301 tcggaaaaat gtttgggcag gaagctggct tttttgccga acctgtccac gcgcgccttc
     3361 aagtcaaata atttcggcag ttggtgcgta ccgaattttt tgatgacgta aaacgtgtct
     3421 ttgccgtaca cgtcggcaat atcgaaagcg tggcggtgga tgtattcgcc ggaaacaggc
     3481 aggctttcaa attcgcccaa ggcggcgcgg cggatgtcgg tcagctcgtt gatgtcgttc
     3541 gtgccgatgt agaacacggc ggtttgtttt tcttgcggga aggtgtccaa acggacggca
     3601 aaaaccatca gtttgcccgc gcagcccgag gcttcgtaat ggcgggcggg gtcggcattg
     3661 aaacgcgcgg cggtcggttc gtccacttgg cggacgtgtt cgcaataggc gtggtcgtgt
     3721 cctttgcccg cgtcttgttt gatgtctttg ttttgataat gatgaccttg caggttggtc
     3781 aggatttctt cgggcgtgtc gcccaagtct atgcccaagt ggttgaccag ttccaacctg
     3841 ccttcttcgt tgatttgggc gaacaacgcc atttcggtgt aggccgggcc gcgctgtacc
     3901 aacgcgccgc cggagttgtt gcacacgccg cccaagacgg acgcgccgat acaggatgag
     3961 ccgatgaccg aatgcggttc gcgccccaaa ggtttcagca gcaattcaag ctggttcagg
     4021 gtcgaaccgg gcagacagac gacttgttcg ttgttgttga tggtttggat gatgttcatc
     4081 cgcatggtgt tcacaatcac gatgtcgcgg tcgtaatcgt tgccgtcggg ggtcgaaccg
     4141 ccggtcagtc cggtattcgc cgcctgcgta atcacaatca cgtctgcttc gacgcacgcc
     4201 tgcagaattt tccacatttc cagaatgctt ccggggcgaa ccaccgccaa cgccttaccc
     4261 tcgccgaagc ggtagccttg gcggtattgt tcggttttcg cggggtcggt gatgatgtat
     4321 ttttcgccta cggtttgggt cagtcttgac agtaattgtg atgcgctcat ggcagtttcc
     4381 ttaaaattgt cggcaggtgc atatgcacat tggaattgtt ttcacattgt agttatacgt
     4441 tatggcaaag taaagaaaat gccgtctgaa cggctttcag acggcaacgg tgcgatacgg
     4501 gaacgccgga acatcaaagc tccggcgttt caaatagggc ggcgggccaa acccccggca
     4561 ctggcgcatc ggagtgggct gctggcttcc gcccctgacc cggtgttccg atttgccatg
     4621 cggggagacc cgcctcagag aaacggcatt ataacgggtt ttctgaaaaa ctcaaccgtt
     4681 ttgatacggt catacgccgg aaacaccacc taaaatttat atttgataat attgtcaaca
     4741 atttctcaaa gcgttatttt gtttctataa gggtatttcc tgtttcggca ttgaaaaata
     4801 tcaaaaattg aactacatta tcgccttttc aaacccgcct gaaaccgaat tttcagacgg
     4861 cattcaaata aaaactgcca aacacggaca caccatgacc acgactaccg cccctcagcg
     4921 tattcgggaa attccctaca actatacttc ctacaccgac cgcgaaatcg tcatccgcct
     4981 actgggcgat gaggcgtggc aaatcctgca agacttgcgc ggacagcgca aaaccgggcg
     5041 ttcggcgcgg atgctgtttg aagtgttggg cgatatttgg gtggtcgtgc gcaatccgta
     5101 tctggtcgat gacttgctgg agcacccaaa acgccgcgcc gcgctggtac gtgaaatgcg
     5161 ccaccgctta aatgaaatcc gcaaacgccg cgacgataat cggcaagtgg atgtgttggt
     5221 tgccgcagca gaaaaagcag tcgagcgttt tgatagcagt tttgatgaaa ccagccaaaa
     5281 acggcggcag attttggagc gtttgagcaa aatcaccaag ccgcacaata ttatgttcga
     5341 cgggctggcg cgggtaacgc acgttaccga tgcaaccgac tggcgcgtgg agtatccgtt
     5401 tgtcgtcgtc aatcccgaca cggaggcgga agtcgcgcct ttggtgcgcg ctttaatcga
     5461 attggacttg gttattatcc cgcgcggcgg cggcacgggt tataccggag gcgcgattcc
     5521 tttggacgca atgagcgcgg tcatcaatac cgaaaagctc gacaagcatc gcggcgtgga
     5581 atacgttgag ctggcaggat tggacggcaa gcatccgatt atccggtgcg gcgcgggcgt
     5641 ggttacgcgg cgggtggaag aaaccgcgca tcaggcaggt ttggtgttcg ccgtcgatcc
     5701 gacttctgcc gatgcgtcct gcgtgggcgg caatgtggcg atgaacgcgg gcggcaaaaa
     5761 agccgtgttg tgggggacgg cgttggacaa cctcgcctac tggcagatgg tcaaccctca
     5821 aggcgaatgg ctgcgtatcg agcgcgtgcg ccacaatttc ggcaaaatcc acgatgaaga
     5881 aaccgccgtg tttgacgtac atacgctgga ttcagacggc ctcaatatcg ttaaaaccga
     5941 acgtttggaa attcccggcc acaaatttcg caaagtcggt ttgggcaaag acgttaccga
     6001 caaattcttg agcggcctgc ccggcgtaca gaaagaaggc acggacggca tcatcaccgg
     6061 cgttgctttc gtgttgcaca aaatgccgaa atacacgcgc actgtgtgta tggagttttt
     6121 cggcacggtc gccaccgcta cgccttctat cgtcgaaatc cgcgatttcc tgctcgccca
     6181 cgacagcgtt cggctggcag gtttggaaca tttggactgg cgttacgtcc gcgccgtcgg
     6241 ctacgcaacc aaagcggcgg gcaagggacg gccgaaaatg gtcttgctgg cggacgtggt
     6301 ttccgacgac gaagccgccg tagaggcagc cgccgaacac atttgcgaac ttgcccgcgc
     6361 ccgcgatggc gaaggcttta tcgccgtgtc tcccgaagcg cgcaaaacct tttggctcga
     6421 ccgcagccgc accgccgcca tcgccaagca caccaacgcc tttaaaatta acgaagacgt
     6481 ggtcatcccg ctcgaaaggc tcggcgagta ttcggacggc atcgaacgca tcaacattga
     6541 gctttccatc caaaacaagc tcaaactctg tgccgccttg gagcaatatc tttcgggcaa
     6601 actccccatc gacaaaatgg gcactgacct gccgaccgcc gaacttttgg gcgaacgcgg
     6661 caaacacgcc ttggcccacg ttgccgccgt caaagaacgt tgggactggt tgctcgccaa
     6721 tttggacacg ccgcttgccg actacaaagc ccgctacggt gcagccgtcc acgccgcgcc
     6781 cgaagccaaa gacaatgaaa gctgctttac cgcattccgc gatttccgcc tgcgcgtgtc
     6841 tgtcaaagca gacgtaatga aaccactcgc cgaaatcttc agcggcaaaa ccgataccaa
     6901 gattatccaa ggcttgggca aaatccacgc caaaaccgta cgcggcagag tctttgtcgc
     6961 cctgcatatg cacgccggcg acggcaatgt ccacaccaat attccggtca actcagacga
     7021 tgccgaaatg cttcagacag cctaccgttc ggtcgaacgc attatgaaaa tcgcccgttc
     7081 gctcggcggc gtaatttccg gcgaacacgg catcggcatc accaagctcg aatttttaag
     7141 cgatgaagaa atgcagccgt tttgggacta caaaaaccaa gtcgatccca aacacacctt
     7201 caaccgccac aaactgatga aaggctcgga cttacgcaac gcctacacgc cgtctttcga
     7261 gcttttgggc gcggaatcgc tgattatgga aaaatcagac ctcggcacga ttgccgattc
     7321 cgtcaaagac tgcctgcgct gcggcaaatg caaacccgtc tgctctactc acgttccgcg
     7381 tgccaacctg ctgtacagtc cgcgcaacaa aatcctcggc gtgggcttgc tgaccgaagc
     7441 cttcttatac gaagaacaaa cccgccgcgg cgtttccgtc aaacactttg aagaactcat
     7501 ggacatcggc gaccactgca ccgtgtgcca ccgctgcgtc aaaccctgcc ccgtcaacat
     7561 cgacttcggc gacgtaaccg tagccgtccg caactacctt gccgattccg gccacaaacg
     7621 atttgcgcct gccgcagcta tgggtatggc gtttttgaac gccaccggcc cgaaaaccat
     7681 caaagccctt cgcgccgcca tgatacagac cggcttccca gcgcaaaact ttgcctacaa
     7741 aatcggcaag cttcttccga tcggcacgaa aaagcaaaaa gccgaaccca aggcaaccgt
     7801 cggcaaagcc ccaattaaag aacaggttat ccatttcatc aaccgtcctt tgccgaaaag
     7861 cgtacccgcc aaaacaccgc gctccttatt gggcatcgaa gacggcaaaa gcatccccat
     7921 catccgcaac cccgccgcgc ccgaagatgc cgaagccgtg ttctacttcc cgggttgcgg
     7981 ttcggaacgc ctgttcagcc aaatcggact tgccgttcaa gccatgctct ggcacgtcgg
     8041 cgtacaaacc gtcctgccgc ccggctatat gtgttgcggc tatccgcaag acgcgggcgg
     8101 caacaaggct aaagccgaag aaatgagcac caacaaccgc gtggctttcc accgtatggc
     8161 aaacaccctc aactacctcg acattaagac cgtcgttgtc agttgcggca cttgttacga
     8221 ccagctcgaa aaataccgct ttgaagaaat cttccccggc tgccgcatca tcgacatcca
     8281 cgaatacctg ctcgaaaaag gcgtgaaact cgacggcgtg caaggtcagc aatacctcta
     8341 ccacgacccc tgccacaccc ccatcaaaac catgaacgcc acccaaatgg ccagcagcct
     8401 gatggggcag aaagtcgtct taagcgaccg ctgctgcggc gagtccggta tgttcgccgt
     8461 caaacgaccc gatatcgcca cccaagtcaa attccgcaaa caagaggaaa tcgagaaaaa
     8521 cctcaaagag ctgccgcagg gtgaacccgt caaaatgctt acttcctgcc cagcctgcct
     8581 gcaaggcttg agccgctaca ccgacgacaa caatatgcct gccgactaca tcgtcatcga
     8641 aatggcgaaa cacatcctcg gcgaaaactg gctagacgag tttgtgaaaa aagccaacaa
     8701 cggcggcgtg gaaaaagtat tgctgtaaca acggacacgg aaatgccgtc tgaacgccga
     8761 aagccttcag acggcattgt ttgaatcaaa tacctacccg aatcatgatt gacggacaaa
     8821 caaccgaacc caaacaaaaa acccgaatca tccttgcccc tatgcagggt ctggtcgatg
     8881 acgtgatgcg cgacctgctg acgcgtattg gcggctacga cgaatgcgtc agcgaatttg
     8941 tacgcattac ccataccgtg cattcccgat ccatatggtt aaaatatgtc cccgaaatcg
     9001 ccaacggaaa caaaacgttt tccggcacgc cctgcaccgt ccaacttttg ggcagcgatg
     9061 cggacaatat ggcggcgaat gcgctggaag ccgtccgctt cggtgcgaac aaaatcgatt
     9121 tgaacttcgg ctgccccgcg cccaccgtca acaaacacaa aggcggcgca atccttttaa
     9181 aagagccgga actgatattc cacatcgtca aaacgctgcg cggacgtttg cccgcacata
     9241 ttccgctcac cgcaaaaatg cggctcggtt acgaagacaa aagccgggct ttggaatgcg
     9301 cctgtgcgat tgccgaaggg ggcgcatgcg gactgaccgt acacgcgcgt accaaagccg
     9361 agggttacga accgccggcg cattgggaat ggataaggaa aatccgagac agcgtcaata
     9421 ttcccgttac cgccaacggc gacgttttca gcctgcaaga ctatatcggc atcaaaacaa
     9481 tcagcggctg caacagcgtg atgctcggtc gcggcgcggt catccgcccc gatttggcgc
     9541 ggcaaatcaa gcaatacgag aacggcgggc cggtcaaaga cacggatttt gccgaagttt
     9601 ctaaatggat acggcagttt ttcgagctgt gcctgacaaa agaggcaaac aataaatacc
     9661 cgatcgcccg tcttaagcaa tggttgggca tgatgaaaaa aacgttcgac ccggcgcaaa
     9721 cgctgtttga ccgcgtccga acggttaagg atgcggatga agtccgccga atcctgaacg
     9781 catttgagca tgagataaat gtttgactgt ctcccatgct tcaaagcaaa tgccgtctga
     9841 aaatctttca gacggcattt catatcttta ttgctgcttt tcttccgtat ccggcgtatt
     9901 tttgtttttc agcttcgcac ccaagcccaa acgtttttca taatccgatt gcggggtatc
     9961 gtcttcctgc ataccgaatg cgccgacatt gacccacagc gacagcagcg cgacgacaaa
    10021 ggagcaaaag ccgattacat accaaaacat tgcccctccc gatttgttaa aatcatatca
    10081 aatacagtgc cgaatttatc acaaacgcac gggcaaatat agtgaattaa atttaaataa
    10141 ggacaaggcg gcgagccgaa gacagtacaa atagagacct ttgcaaaatt cctcaaaatc
    10201 ccctaaattc ctactaagac atttagggga tttctcatga gcaccttctt ccagcaaacc
    10261 gcccaagcca tgattgccaa acacatcaac
//
LOCUS       DAXIFD010000065        10287 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.065, whole genome shotgun sequence.
ACCESSION   DAXIFD010000065 DAXIFD010000000
VERSION     DAXIFD010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10287
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.065"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            241..1305
                     /locus_tag="ACFOCN_001122"
     CDS             241..1305
                     /locus_tag="ACFOCN_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-butanediol dehydrogenase"
                     /protein_id="HFC6970277.1"
                     /translation="MKAARFYDKGDIRIKDIPEPTVAPGTVGINVAWCGICGTDLHEF
                     MEGPIFIPPCGHPHPISGESAPVTMGHEFSGVVYAVGEGVDDIKVGQHVVVEPYIVHD
                     DVPTGSGSNYHLSKDMNFIGLGGCGGGLSEKIAVKRRWVHPISDKIPLDQAALIEPLS
                     VGHHAYVRSGAKEGDVALVGGAGPIGLLLAAVLKAKGIKVIITELSKARKDKARESGV
                     ADYILDPSEVDVVEEVKKLTNGEGVDVAFECTSVNKVLDTLVEACKPAANLVIVSIWS
                     HPATVNVHSVVMKELDVRGTIAYCNDHAETIKLVEEGKINLEPFITQRIKLDELVSEG
                     FERLIHNNESAVKIIVNPNL"
     gene            1446..1769
                     /locus_tag="ACFOCN_001123"
     CDS             1446..1769
                     /locus_tag="ACFOCN_001123"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HFC6970278.1"
                     /translation="MGDSVLSTIQQTIDRRKSADPSESYVAQLLHKGEDKILKKVIEE
                     AGEVLMSSKDKDPSHLVYEVADLWFHTMILLAHHNLKAEDVLDELARRQGLSGLVEKA
                     ARTES"
     gene            1842..2165
                     /locus_tag="ACFOCN_001124"
     CDS             1842..2165
                     /locus_tag="ACFOCN_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HFC6970279.1"
                     /translation="MDNCIFCKIAAKDILAQTVYEDGEMVCFKDINPAAPVHLLLIPK
                     VHFDSLAHAAPEHQPLLGKMMLKVPEIAKAAGLADGFKTLINTGKGGGQEVFHLHIHI
                     MGTPV"
     gene            2212..2415
                     /gene="tatA"
                     /locus_tag="ACFOCN_001125"
     CDS             2212..2415
                     /gene="tatA"
                     /locus_tag="ACFOCN_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HFC6970280.1"
                     /translation="MGSFSLTHWIIVLIIVVLIFGTKKLRNVGKDLGGAVHDFKQGLN
                     EGTDGKEAQKDDVIEHKKDEDKA"
     gene            2419..3105
                     /gene="tatB"
                     /locus_tag="ACFOCN_001126"
     CDS             2419..3105
                     /gene="tatB"
                     /locus_tag="ACFOCN_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HFC6970281.1"
                     /translation="MFDFGLGELVFIGIIALIVLGPERLPEAARTAGRLIGRLQRFVG
                     SVKQEFDTQIELEELRKAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDGLKPWEKLP
                     EQRTPADFGVDENGNPFPDAANTLSDGISDVMPSERSDTSAETLGDSGQTGSTAEPAE
                     TDQDRAWREYLTASAAAPVVQTVEVSYIDTAVETPVPHTTSLRKQAISRKRGLRPKHR
                     AKPKLRVRKS"
     gene            3119..3889
                     /gene="tatC"
                     /locus_tag="ACFOCN_001127"
     CDS             3119..3889
                     /gene="tatC"
                     /locus_tag="ACFOCN_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HFC6970282.1"
                     /translation="MSETQNEQPVQPLVEHLIELRRRLMWTVVGILVCFFGLMPFAQQ
                     LYTFIADPLMANLPKDTSMIATDVIAPFFVPVKVTLMAAFLISLPHTLYQIWAFVAPA
                     LYQNEKRLITPLVLSSVSLFFIGMAFAYFLVFPVIFKFLASVTPVGVNMATDIDKYLS
                     FILGMFVAFGTTFEVPIVVILLTKIGVVTTEQLKRARPYVIVGAFVIAAIITPPDVIS
                     QTLLAIPLILLYEAGIWFGRFFTPRSEQDGDIQPPATT"
     gene            3942..4550
                     /locus_tag="ACFOCN_001128"
     CDS             3942..4550
                     /locus_tag="ACFOCN_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HFC6970283.1"
                     /translation="MNTLYLGSNSPRRMEILTQLGYQVVKLPANIDETVRQNEDPARY
                     VQRMAEEKNRTALTLFCETNGTMPDFPLITADTCVVSDGIILGKPRSQAEAIEFLNRL
                     SGKQHTVLTAVCIHYRGKTSSRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQG
                     IGGIFIQSIEGSFSGIMGLPVYETVSMLQDLGYRSPLSALKP"
     gene            4559..4912
                     /locus_tag="ACFOCN_001129"
     CDS             4559..4912
                     /locus_tag="ACFOCN_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HFC6970284.1"
                     /translation="MNRQTAYFLASFSLIALIILSLSWELWIAPLRPGGSWLALKALP
                     LCLPLSGILKKKIYTYQYSSMLVLIYFAEAVMRLFDAYPAEQICAALSAVFSIIFFIS
                     CLSFVKQYKETNNAR"
     gene            4902..6716
                     /locus_tag="ACFOCN_001130"
     CDS             4902..6716
                     /locus_tag="ACFOCN_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Wzy polymerase domain-containing protein"
                     /protein_id="HFC6970285.1"
                     /translation="MPAETTVSGAHPAAKLPIYILPCFLWIGIVPFTFALRLQPSPDF
                     YHDAAAAAGLIVLLFLTAGKKLFDVKIPPISFLLFAMAAFWYLQARLMNLIYPGMNDI
                     VSWIFILLAVSAWACKSLVAHYGQERIVTLLAWSLLIGSLLQSCIVVIQFAGWEDTPM
                     LQNIIVYSGQGVIGHIGQRNNLGHYLMWGILAAAYLNGQRKIPPALGAICLIMQTAVL
                     GLVNSRTILTYIAAIALILPFWYFRSDKSNRRTMIGIAAAVFLTALFQFSMNTILETF
                     TGIRYETAVERVANGGFTDLPRQIEWNKALAAFQSAPIFGHGWNSFAQQTFLINAEQH
                     NIHDNLLSNLFTHSHNIVLQLLAEMGISGTLLVAATLLTGIAGLLKRPLTPASLFLIC
                     TLAVSMCHSMLEYPLWYVYFLIPFGLMLFLSPAEASDGIAFKKAANLGILTASAAIFA
                     GLLHLDWTYTRLVNAFSPATDDSAKTLNRKINELRYISANSPMLSFYADFSLVNFALP
                     EYPETQTWAEEATLKSLKYRPHSATYRIALYLMRQGKVAEAKQWMRATQSYYPYLMPR
                     YADEIRKLPVWAPLLPELLKDCKAFAAAPGHPEAKPCK"
     gene            6906..7583
                     /gene="misR"
                     /locus_tag="ACFOCN_001131"
     CDS             6906..7583
                     /gene="misR"
                     /locus_tag="ACFOCN_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator MisR"
                     /protein_id="HFC6970286.1"
                     /translation="MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSG
                     QYDVVVLDSMMPKMNGLDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKP
                     CTPRELLARINAILRRAQHSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEF
                     NLLEVLMRHAGQVVSKETLSVEALDRKLAKFDRSIDVHISSIRHKLGDASLIQTVRGL
                     GYLFVKN"
     gene            7596..9002
                     /gene="misS"
                     /locus_tag="ACFOCN_001132"
     CDS             7596..9002
                     /gene="misS"
                     /locus_tag="ACFOCN_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     MisS"
                     /protein_id="HFC6970287.1"
                     /translation="MKLFQRIFATFCAVIVCAIFVASFSFWLVQNTLAENQFNQRRTI
                     ETTLMGSIISAFRARGDAGAREILTEWKDSPVSSGVYVIQGDEKKDILNRYIDSYTIE
                     RARLFAAGHPHSNLVHIEYDRFGEEYLFFTKDWDKLQARRLPSPLLIPGLPLAPIWHE
                     LIILSFIIVVGLLMAYILAGNIAKPIRILGNGMDRVANGELETRISQQVDDRDDELSH
                     LAIQFDKMVEKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQPQKQEQYLKRL
                     EGELTRMDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQKNGQTVTL
                     SADGKIPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDN
                     GPGVDEMQLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKIIAENIKPNGLRM
                     RFILPKKKTGSKTEKSAN"
     gene            9120..>10287
                     /locus_tag="ACFOCN_001133"
     CDS             9120..>10287
                     /locus_tag="ACFOCN_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HFC6970288.1"
                     /translation="MSAQTDPGYFFMPNHIILIGASERPYSLGERVLSNLLSTPFQGK
                     ITPVNPRHHTIAGLPAYTSLNKIPGNADLIIAVTLPDSYDTLFKTCRKKQLRHIILIQ
                     DWDSLSAAELHTAETAIRKHHGNGLNITACTTAGIQLPSLGLNISTQDGYAAGHTAIL
                     TGNAAVSRQIDNILNKLRQGTSRHISLHPGISPITSADWLNRFGHSLHTKTAVLHHNP
                     EENQRKLFSAIRQFTRHTPLILHITCRTTETDRAVLHCLARHCNFLISFNADDLEAAL
                     RAQLSDLPPLSRLDILSDTPAEWLNAHAPKTLALHFPNLPHHIRNGHLTGTPTPSICH
                     DIASRQLARPDTQAVLTILSPSGHEDYKKTARALIRLSEQSAKPLLVSSPFSDGI"
BASE COUNT         2627 a         3294 c         2278 g         2088 t
ORIGIN      
        1 ccgtactggt ttttgttaat ccaccataaa tgccatctga agccgattcg gttttcagac
       61 ggcatcatta tttgacctga cgcaaacaga aagccttccg cgtgcttaaa cacatctctt
      121 gtagtaaaat atctaaacag attcaactgg aaacggtcag gcttcttcac gccattccca
      181 tttcaaccgc cgcctgccag attcagacgg tattcctact tgaaaacaag gagcgttaca
      241 atgaaagcag cacgttttta cgacaaaggc gacatccgca tcaaagacat ccccgaaccg
      301 accgtcgccc ccggcaccgt cggcatcaat gttgcctggt gcggcatctg cggtaccgac
      361 ctgcacgaat tcatggaagg cccgattttc attccgcctt gcggtcatcc gcacccgatt
      421 tccggcgagt ccgcacccgt cacgatggga cacgagttct ccggcgtggt ctatgccgtc
      481 ggcgaaggcg tggacgacat caaagtcggt caacacgtcg tggtcgagcc ttacatcgta
      541 cacgacgacg taccgaccgg ctcgggcagc aactaccacc tctccaaaga catgaacttt
      601 atcggcttgg gcggctgcgg cggcggcctg tccgaaaaaa tcgccgtcaa acgccgttgg
      661 gtgcatccga tttccgacaa aatcccgttg gatcaagccg ctttgatcga accgctgtct
      721 gtcggacacc acgcctatgt acgcagcggc gcgaaagaag gcgacgtcgc attggtcggc
      781 ggtgcaggtc cgatcggttt gctgttggct gccgtgttga aagccaaagg catcaaagtc
      841 atcatcaccg agttgagcaa agcacgcaaa gacaaagcgc gcgaatccgg cgttgccgac
      901 tacatcctcg acccgtccga agtcgatgtt gtcgaagagg tgaaaaaact gaccaacggc
      961 gaaggcgtgg acgtggcatt cgaatgtacc agcgtgaaca aagtgttgga tactttggtc
     1021 gaagcctgca aacctgccgc caatttggtt atcgtatcca tctggagcca ccctgcaacc
     1081 gtcaacgtcc acagcgtcgt gatgaaagag ctggatgtgc gcggcacgat tgcctactgt
     1141 aacgaccacg ccgaaaccat caaactggtc gaagaaggca aaatcaacct cgaacccttc
     1201 atcacccagc gcatcaagct ggacgaactg gtttccgaag gcttcgagcg tctgatccac
     1261 aacaacgaat ccgccgttaa aattattgtg aatccaaacc tataagcaaa ttacatttgc
     1321 aacagcacaa atgccgtctg aaacgctcag acggcatttt ccaacgaaac gcaacaggcg
     1381 tattgcccga gagcagccgt ttaacctatc attccgaaca aacagaaaca aacagaagga
     1441 aaatcatggg agattccgta ctatccacca tccaacaaac catcgaccgg cgcaaatccg
     1501 ccgatccgtc cgaatcctac gtcgcacaac tcctgcacaa gggcgaggac aaaatcctaa
     1561 aaaaagtgat tgaagaggcg ggcgaagtat taatgtcatc caaagacaaa gacccgtccc
     1621 acctggttta cgaagtcgcc gacctttggt ttcacacgat gatcctgctg gcgcaccaca
     1681 acctgaaggc ggaagacgta ttggacgaac ttgcacgccg tcaggggctg tcggggctgg
     1741 tcgaaaaagc cgcccgcaca gaatcttaaa tttatattac aatctcatcc tttccacgtt
     1801 taatccgtct gggtgcttct tcagacggca acggagccgt tatggacaac tgtattttct
     1861 gcaaaatcgc cgccaaagac attctggcgc aaaccgtcta tgaagacggc gaaatggttt
     1921 gtttcaaaga catcaacccc gctgctccgg ttcatctgct gctgattccc aaagtccatt
     1981 tcgattcgtt ggcacacgcc gcgcccgaac atcagcccct tttgggaaaa atgatgctga
     2041 aagttcccga aatcgccaaa gcggcaggac tggcagacgg cttcaaaacc ctgatcaaca
     2101 ccggaaaagg cggcggacaa gaggtcttcc acctgcatat acacatcatg ggcacacccg
     2161 tataaaccgt tatttcacaa tcaaccccta atacttactt aaggatacat catgggcagt
     2221 ttttctctga cgcactggat tatcgtactg attatcgtcg ttttgatatt cggcaccaaa
     2281 aaactgcgca acgtcggcaa agacctcggc ggtgcggttc atgacttcaa acaggggctg
     2341 aacgaaggta cagacggcaa agaagcccaa aaagacgatg taatcgaaca caaaaaagac
     2401 gaagacaaag cgtaatttat gtttgatttc ggtttgggcg agctggtttt tatcggcatt
     2461 atcgccctga ttgtcctcgg ccccgaacgc ctgcccgagg ccgcccgcac cgccggacgg
     2521 ctcatcggca ggctgcaacg ctttgtcggc agcgtcaaac aggaatttga cacgcaaatc
     2581 gaactggaag aactaaggaa ggcaaagcag gaatttgaag ctgccgctgc tcaggttcga
     2641 gacagcctca aagaaaccgg tacggatatg gagggtaatc tgcacgacat ttccgacggt
     2701 ctgaagcctt gggaaaaact gcccgaacag cgcacgcctg ctgatttcgg tgtcgatgaa
     2761 aacggcaatc cctttcccga tgcggcaaac accctatcag acggcatttc cgacgttatg
     2821 ccgtccgaac gttccgatac ttccgccgaa acccttgggg acagcgggca aaccggcagt
     2881 acagccgaac ccgcggaaac cgaccaagac cgcgcatggc gggaatacct gactgcttct
     2941 gccgccgcac ccgtcgtaca gaccgtcgaa gtcagctata tcgatactgc tgttgaaacg
     3001 cctgttccgc acaccacttc cctgcgcaaa caggcaataa gccgcaaacg cggtttgcgt
     3061 ccgaaacacc gcgccaaacc taaattgcgc gtccgtaaat cataaagaga gcaatccggt
     3121 gtccgaaaca caaaacgaac aacccgtcca accgcttgtc gagcatctca tcgagctgcg
     3181 ccgccgcctg atgtggacgg ttgtcggcat cttagtctgc tttttcggcc taatgccgtt
     3241 tgcccaacaa ctctatactt ttatcgccga cccgctgatg gcaaacctgc ccaaagacac
     3301 cagcatgatt gccaccgatg tcatcgcacc gtttttcgtg ccggtcaaag ttaccctgat
     3361 ggcggcattt ttaatttcgc tgccgcatac gctctaccaa atctgggcat ttgtcgcgcc
     3421 cgcactctac caaaacgaaa aacgcctgat tacgccgctc gtcctctcca gcgtcagcct
     3481 gtttttcatc ggcatggcat ttgcctactt tttggttttc cccgtcattt tcaaattcct
     3541 tgccagcgtt acccctgtcg gtgtcaatat ggcgacagac atcgacaaat acctctcctt
     3601 catcttgggg atgtttgtcg cattcggtac aacgtttgaa gtccccattg tcgttatcct
     3661 gttaaccaaa attggtgtgg taacaaccga acagctcaaa cgcgcccgcc cctatgtgat
     3721 tgtcggcgcg tttgtcattg ccgccatcat cacgccgccc gatgtgattt cacaaaccct
     3781 gcttgccatt ccgctgattc tcttatacga agcaggtatt tggttcggac gctttttcac
     3841 gccacgttca gaacaggatg gcgacataca gccgcctgca acaacctgac actatgccgt
     3901 ccgaacctcc gcctcatacc gcaacagatt aaggaatacc tttgaatacc ctctatttag
     3961 gttcaaacag cccgcgccga atggaaatcc tgacacagtt gggctatcag gtcgtcaagc
     4021 tgcctgccaa catcgacgaa acggtcagac agaacgaaga ccctgcccgt tacgttcaaa
     4081 ggatggcaga agaaaaaaac cgaaccgccc tgaccctctt ttgcgaaacc aacggcacaa
     4141 tgcccgattt ccccctgatt accgccgaca cctgcgtcgt ttcagacggc attatattag
     4201 gcaaaccccg ctcccaagcc gaagcaatcg aatttttaaa ccgattgtcc ggcaaacaac
     4261 ataccgtcct gactgctgtc tgcattcatt atcgcggcaa aacgtcaagc cgcgtccaaa
     4321 ccaaccgcgt tgttttcaag cccctgagtt cggaagaaat ttccgcctat gtgcaaagcg
     4381 gcgaaccgat ggacaaagcc ggcgcctacg ccgtacaagg cataggcggc atctttatcc
     4441 aatctatcga aggcagcttc agcggcatta tgggactgcc cgtttatgaa accgtttcga
     4501 tgttgcagga tttgggatac cgctccccct tgtccgccct taaaccgtaa agaccgccgt
     4561 gaacagacaa accgcttact tccttgcctc cttcagcctg atcgcactga taatcctgtc
     4621 cctttcttgg gaactgtgga ttgcaccgtt acgcccgggc ggctcgtggc tcgcgctcaa
     4681 agccctcccc ctctgtctgc cgctttcagg catcttgaaa aagaaaatct atacctacca
     4741 atacagctcc atgctggttc tgatttattt tgccgaagcc gtcatgcgcc tgttcgacgc
     4801 ctatccggca gaacaaattt gcgccgcgct ttccgcagta ttcagcatca tcttcttcat
     4861 atcctgcctg tcgttcgtca aacaatacaa ggaaacaaac aatgcccgct gaaacgaccg
     4921 tatccggcgc gcaccccgcc gccaaactgc cgatttacat cctgccctgc ttcctttgga
     4981 taggcatcgt cccctttacc tttgcgctca ggctgcaacc gtcgcccgac ttttaccacg
     5041 atgccgccgc cgcagccggc ctgattgtcc tgttgttcct cacggcagga aaaaagctgt
     5101 ttgatgtcaa aatcccacct atcagcttcc ttctgtttgc aatggcggcg ttttggtatc
     5161 ttcaggcacg cctgatgaac ctgatttacc ccggtatgaa cgacatcgtc tcttggattt
     5221 tcatcttgct cgccgtcagc gcgtgggcct gcaagagttt ggtcgcacac tacggacaag
     5281 aacgcatcgt taccctgctt gcctggtcgc tgcttatcgg ctccctgctt caatcctgca
     5341 tcgtcgtcat ccagtttgcc ggctgggaag acacccccat gcttcaaaac attattgttt
     5401 acagcgggca aggcgtaatc ggacacatcg gacagcgcaa caacctcgga cactacctga
     5461 tgtggggcat actcgccgcc gcctacctca acggacaacg aaaaatcccg cccgccctcg
     5521 gcgcaatctg cctgattatg cagaccgccg ttttaggttt ggtcaattcg cgcaccatct
     5581 tgacctacat agccgccatc gccctcatcc ttcccttctg gtatttccgt tcggacaaat
     5641 ccaacaggcg gacgatgatc ggcatagccg cagccgtatt ccttaccgcg ctgttccaat
     5701 tttccatgaa caccattctg gaaaccttta ccggcatccg ctacgaaact gccgtcgaac
     5761 gcgttgccaa cggcggtttc acagacttgc cgcgccaaat cgaatggaat aaagcccttg
     5821 ccgccttcca gtccgccccg atattcgggc acggctggaa cagttttgcc caacaaacct
     5881 tcctcatcaa tgccgaacag cacaacatac acgacaacct cctcagcaac ttgttcaccc
     5941 attcccacaa catcgtcctc caactccttg cagagatggg aatcagcggc acgcttctgg
     6001 ttgccgcaac cctgctgacg ggcattgccg ggctgcttaa acgccccctg acccccgcat
     6061 cgcttttcct gatctgcacg cttgccgtca gtatgtgcca cagtatgctc gaatatcctt
     6121 tgtggtatgt ctatttcctc atccctttcg gactgatgct cttcctgtcc cccgcagagg
     6181 cttcagacgg catcgccttc aaaaaagccg ccaatctcgg catactgacc gcctccgccg
     6241 ccatattcgc aggattgctg cacttggact ggacatacac ccggctggtt aacgcctttt
     6301 cccccgccac tgacgacagt gccaaaaccc tcaaccggaa aatcaacgag ttgcgctata
     6361 tttccgcaaa cagtccgatg ctgtcctttt atgccgactt ctccctcgta aacttcgccc
     6421 tgccggaata ccccgaaacc cagacttggg cggaagaagc aaccctcaaa tcactaaaat
     6481 accgccccca ctccgccacc taccgcatcg ccctctacct gatgcggcaa ggcaaagttg
     6541 cagaagcaaa acaatggatg cgggcgacac agtcctatta cccctacctg atgccccgat
     6601 acgccgacga aatccgcaaa ctgcccgtat gggcgccgct gctacccgaa ctgctcaaag
     6661 actgcaaagc cttcgccgcc gcgcccggtc atccggaagc aaaaccctgc aaatgacccg
     6721 cgccggcgga tgcggatacc gcccgaaatg taaagctcca tgcaagacat tgcaaaaaac
     6781 agcaaaccgg tagggaaata cgctatcaaa aaacattgca gccgtgttaa gataaaccgt
     6841 caaacaatct tttcacgccc cgcccgaaac agggtcgggg cataccctta cgaaaaggaa
     6901 acaccatgag ccgcgtatta ctcgtagatg acgatgccct gctaaccgaa ctgctgaccg
     6961 aatacctgag cgccgaaggt ctgaacgtcc gcagcgttcc cgacggggaa gcaggcgtac
     7021 aggaaatcct gagcgggcag tacgatgtag tcgtattgga ttccatgatg cccaaaatga
     7081 acggcttgga tgtcttgaaa aacgtacgcg cccgaagcac cgtccccatc atcatgctga
     7141 ccgccaaagg cgacgacatc gaccgaatca tcggcttgga aatgggggcg gacgactatg
     7201 tccccaaacc ctgcacacca cgcgaactct tggcacgcat caatgctatc ctgcgccgcg
     7261 cacaacacag cggcgaacag aacaacgcac ccaacagcat ctccgtcagc gatgtcgtcc
     7321 tgtaccccgc caaacgccag gcatccgtca aagacatgcc gctcgaactg accagcaccg
     7381 aattcaacct gctcgaagtc ctgatgcgcc atgccggaca ggtagtcagc aaagaaaccc
     7441 tgtccgtcga agcactcgac cgcaagctgg caaaattcga ccgcagtatc gacgtacaca
     7501 tctccagcat ccgccacaag ttgggcgatg cctctctgat tcaaaccgta cgcggcttgg
     7561 gctacctgtt tgtcaaaaac tgaagcaacg ggcaaatgaa actgttccaa cgcattttcg
     7621 ccacattttg cgcagttatc gtctgtgcaa tctttgtggc gagtttttct ttttggctgg
     7681 tgcagaacac ccttgccgaa aaccagttca accaacgccg caccatcgaa accactttga
     7741 tgggcagcat catttccgca ttccgggcac gcggggacgc gggcgcgcgc gaaatcctga
     7801 cggaatggaa agacagcccc gtctcatcgg gcgtgtacgt tatacagggc gacgagaaaa
     7861 aagatatcct gaaccggtat atcgacagct acaccatcga acgcgcccgg cttttcgccg
     7921 ccggacaccc gcattccaac ctcgtccata tcgaatacga ccgcttcggc gaagaatacc
     7981 tgttcttcac caaagactgg gacaaactcc aagcccgccg cctgcccagc cccctgttga
     8041 tccccggtct gccgctcgcc ccgatttggc acgaactcat catattgtcc ttcatcatcg
     8101 tcgtcggact gctgatggcg tacatcctcg ccggcaatat cgccaaaccc atcagaatct
     8161 taggcaacgg catggacagg gtggcaaacg gagaacttga aacccgtatc tcccaacagg
     8221 tcgacgaccg cgacgacgaa ttgtcccatc ttgccatcca attcgacaaa atggtggaaa
     8281 aactcgaaaa actcgttgcc aaagaacgcc acctgctcca tcacgtctcc catgaaatgc
     8341 gttctcccct tgcgcgtatg caggcaattg tcggactgat tcaggcgcag ccccaaaaac
     8401 aggagcaata tctcaaacgg ctggaaggcg aactgacccg catggatacg ctggccgggg
     8461 aactgttaac cctgtcccgt ctcgaaactt ccaatatggc tttggaaaaa gaaagcctga
     8521 aactcctgcc cttcctgggc aacctggtag aagacaatca aagcattgcc cagaaaaacg
     8581 gacaaacggt taccctgtct gccgacggaa aaatccccga aaacacaacc atccttgcca
     8641 acgaaagcta cctgtaccgc gccttcgaca acgtcatccg caacgccgtc aactacagtc
     8701 ccgaaggcag caccatcctg atcaacatcg gacaagacca caaacactgg ataatcgacg
     8761 ttaccgacaa cggccccggc gtggacgaaa tgcagctccc gcacatcttc accgctttct
     8821 accgtgcaga ctccagtgcg aacaaacccg gaacaggact ggggcttgca ttgacccaac
     8881 atattattga acagcactgc ggcaaaatca tcgccgaaaa catcaaaccg aacgggctgc
     8941 ggatgcgctt catcctaccc aagaaaaaaa ccggttccaa aacagaaaaa agtgcgaact
     9001 gaccataatg ccgtctgaac cggcttcaga cggcattgca caaacagtta ccccaaaaca
     9061 aacacacagc gggtgcatct ccaaaaatca cgcacatacc gtccgcaaag gaatatatca
     9121 tgtcggcaca aaccgatccc ggctacttct tcatgcccaa ccacattatc ctgataggcg
     9181 cgagcgaacg tccgtacagc ctgggcgaac gcgtactcag caacctgctg agtacgccct
     9241 ttcaaggaaa aatcaccccc gtaaacccgc gccaccacac catagccggg cttcccgcct
     9301 acaccagcct caacaaaatc cccggcaatg cagacctgat tattgccgtt accctacccg
     9361 acagttacga caccctcttc aaaacctgcc gcaaaaagca gctccgacac atcatcctca
     9421 tacaggactg ggacagcctg tctgccgcag aactgcacac cgccgaaact gccatccgca
     9481 aacaccacgg caacggactc aacatcaccg cctgcaccac cgcaggcatc caactgccct
     9541 cactcggact taacatcagt acccaagacg gatacgccgc aggccatacc gccatactga
     9601 ccggcaatgc cgccgtcagc cgccaaatcg acaacatcct gaacaaactc cgtcaaggca
     9661 catcccgcca catcagcctg catcccggca tcagccccat cacatccgcc gattggctca
     9721 accgcttcgg acacagcctg cacaccaaaa ccgccgtcct acaccacaac cctgaagaga
     9781 atcagcgcaa actgttcagc gcaatccgcc aatttacccg ccatacgccg ctgattctcc
     9841 acatcacctg ccgcacgaca gaaaccgacc gtgccgtact gcactgcctc gcccgacact
     9901 gcaacttcct catcagtttc aacgccgacg acctcgaagc cgcactgcgc gcccaactgt
     9961 ccgaccttcc acccctgtcc cgactcgaca tcctgtccga cacgcctgcc gaatggctga
    10021 acgcgcacgc gccaaaaacc ctcgccctcc actttcccaa ccttccccac cacatccgca
    10081 acggacacct gaccggcaca cccacaccct caatctgcca cgacatcgcc tcacgtcagc
    10141 ttgcccgccc cgacacccaa gccgtcctga ccatcctcag cccctccgga cacgaggatt
    10201 acaaaaaaac agcacgcgcc cttatccgcc tgtccgaaca gagcgccaaa cccctgctcg
    10261 tcagcagccc cttttcagac ggcataa
//
LOCUS       DAXIFD010000066        10150 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.066, whole genome shotgun sequence.
ACCESSION   DAXIFD010000066 DAXIFD010000000
VERSION     DAXIFD010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10150
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.066"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(129..464)
                     /locus_tag="ACFOCN_001134"
     CDS             complement(129..464)
                     /locus_tag="ACFOCN_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6970289.1"
                     /translation="MFKDWKEHTALVKKSFGELGKAHPKMLQAYGALEQAAAAEALDA
                     KTRELIAIAVAITTRCESCISVHAAAAAKAGATDSEIAGALATAIALNAGAAYTYALR
                     ALEAVETQK"
     gene            593..1498
                     /gene="mtrA"
                     /locus_tag="ACFOCN_001135"
     CDS             593..1498
                     /gene="mtrA"
                     /locus_tag="ACFOCN_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter MtrCDE transcriptional
                     activator MtrA"
                     /protein_id="HFC6970290.1"
                     /translation="MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLVHIVT
                     SGSGYLCIDGETSPRPVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQC
                     GNGQDMSLFCARFRYDTHADLMNGLPETVFLNIAHPSLQYVVSMLQLESKKPLTGTVS
                     VVNALSSVLLVLILRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKM
                     VAAANMSRAQLMRRFKSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSE
                     THFGKAFKRQYHVSPGQYRKEGGQK"
     gene            complement(1560..2048)
                     /locus_tag="ACFOCN_001136"
     CDS             complement(1560..2048)
                     /locus_tag="ACFOCN_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6970291.1"
                     /translation="MKKYLIPLSIVAVLSGCQSIYVPTLTEIPVNPINTVKTEAPAKG
                     FRLASSHWTDVAKISDEATRLGYQVGIGKMTKVQAAQYLNNFRKRLVGRNAVDDSMYE
                     IYLRSAIDSQRGAINTEQSKLYIQNALRGWQQRWKNMDVKPNNPAFTNFLMEVMKMQP
                     LK"
     gene            2195..3097
                     /locus_tag="ACFOCN_001137"
     CDS             2195..3097
                     /locus_tag="ACFOCN_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6970292.1"
                     /translation="MDTAKKDILGSGWMLVAAACFTIMNVLIKEASAKFALGSGELVF
                     WRMLFSTVALGAAAVLRRDTFRTPHWKNHLNRSMVGTGAMLLLFYAVTHLPLATGVTL
                     SYTSSIFLAVFSFLILKERISVYTQAVLLLGFAGVVLLLNPSFRSGQETAALAGLAGG
                     AMSGWAYLKVRELSLAGEPCWRVVFYLSVTGVAMSSVWATLTGWHTLSFPSAVYLSCI
                     GVSALIAQLSMTRAYKVGDKFTVASLSYMTVVFSALSAAFFLGEELFWQEILGMCIII
                     LSGILSSIRPTAFKQRLQSLFRQR"
     gene            complement(3138..4268)
                     /locus_tag="ACFOCN_001138"
     CDS             complement(3138..4268)
                     /locus_tag="ACFOCN_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6970293.1"
                     /translation="MAKHLPLAVLTALLLAACGGSDKPPAEKPAPAENRNVLKIYNWS
                     EYVDPETVADFEKKNGIKVTYDVYDSDETLESKVLTGKSGYDIVAPSNAFVGRQIKAG
                     AYQKIDKSLIPNYKHLNPEMMRLMDGVDPGHEYAVPFYWGTNTFAINTERVKKALGTD
                     KLPDNQWDLVFDPEYTSKLKQCGISYLDSAAEIYPMVLNYLGKNPNSSNTEDIREATA
                     LLKKNRPNIKRFTSSGFIDDLARGDTCVTIGFGGDLNIAKRRAEEAGGKEKIRVMMPK
                     EGVGIWVDSFVIPKDAKNVANAHKYINDFLDPEVSAKNGNFVTYAPSSKPARELMEDE
                     FKNDNTIFPTEEDLKNSFIMVPIQPAALKFMVRQWQDVKAGK"
     gene            4473..7097
                     /gene="alaS"
                     /locus_tag="ACFOCN_001139"
     CDS             4473..7097
                     /gene="alaS"
                     /locus_tag="ACFOCN_001139"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HFC6970294.1"
                     /translation="MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQ
                     FKDVFLGFDKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFK
                     RDAIHFAWEFLTSPEWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKG
                     AKYASDNFWQMGDTGPCGPCSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFN
                     RDEQGNMNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSME
                     EPSLKVIADHIRSCSFLIADGVLPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLV
                     ADLVKEMGDAYPELKEKQVQIEEALKNEESRFAQTLETGMALLENALAKGSKKLDGEI
                     IFKLYDTYGFPYDLTADICRERNIELDEAGFEREMEAQRARARAAQSFKANAQLPYDG
                     QDTEFKGYSERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY
                     IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH
                     LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAV
                     NAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKIIS
                     EGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA
                     LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNA
                     VILLAAVNDGKVSLCAGVSKALTGKVKAGDLVKFAAEQVGGKGGGRPDLAQAGGTDAG
                     KLPAVLDSVKDWVGAKLV"
     gene            complement(7186..8208)
                     /locus_tag="ACFOCN_001140"
     CDS             complement(7186..8208)
                     /locus_tag="ACFOCN_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6970295.1"
                     /translation="MLTKKEFEKFLDEVCTVLRQEAKNAPFKSQDIFENRVRALCIAK
                     IPAYADIVINPEPVPQIFPDVPIGEYGVEVKFTLKDTWRSVANSIQEKNKADGVQHIY
                     VVFGKMGGIPDVKWQLYEDSVIHVRTSHVPRFEVEIESDRPSLFEGFGISYAEFADLD
                     MHEKMEYIRKYARNRLKEGERLWWIEDIDAVDSHDLPLEVRLYTSLPQEEKIRLRAEA
                     ALVSPRIVCSGRAKHKYDNAVLYLITYRGVLCHQARDLFSAGSVANSAEDYRGGNYVE
                     KSLKLIEHEIEKAALEMDDALIVEYWGESVPTEKRLEYWIKMLDDLADGWIPSESLFN
                     GRYKAK"
     gene            complement(8262..9413)
                     /locus_tag="ACFOCN_001141"
     CDS             complement(8262..9413)
                     /locus_tag="ACFOCN_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6970296.1"
                     /translation="MTEFARKNWNKLAGDAIKAKMHEHGIGFIQLSELFLEQGESETA
                     NAICNKVNRGTFSHAFYLKCMELMTKQEKQEDREKKYKIISLFSGCGGMDLGFLGGFE
                     FLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGDIWQHLDEIPTSADIIIGGF
                     PCQDISINGKGAGISGSRSGLYKAMLSAVERVRPKIFVAENVKGLLMKHHRKDLETVL
                     SDFRNLGYQVDYYLLNAADYGVPQTRERVIIVGRLPEIPEIQIEKTNTSNSYVTARQA
                     IGDLVDKVEDEIANHIWSRAEKSPDQGSRKLDAERAGYTIRAECHGNIQWHYELPRRI
                     SMREAARIQSFPDNFIFQAKLRATERQIGNAVPPVLGWHIAAAVSKALK"
     gene            10044..>10150
                     /locus_tag="ACFOCN_001142"
     CDS             10044..>10150
                     /locus_tag="ACFOCN_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6970297.1"
                     /translation="MSTFFQQTAQAMIARHIDRFPLLKLDQVIDWQPIE"
BASE COUNT         2520 a         2685 c         2402 g         2543 t
ORIGIN      
        1 cttacccctt gtttctcaaa tgccgtctga aaaaacggct gcatatgttg tctacaaaat
       61 atcgggaagc ataacaggca aaatgccgtc tgaaatattt tcagacggca tttcttatcc
      121 gaaacggatt atttttgcgt ttcaaccgct tccaatgcac gcagggcata agtgtaagcg
      181 gcaccggcat tcagggcgat ggcggttgcc aatgcgcctg cgatttcgct gtcggtcgca
      241 ccggctttgg cggcagcggc ggcgtgaacg ctgatgcagc tctcgcaacg agtggtaatg
      301 gcaacggcga tggcaatcag ttcgcgcgtt ttggcatcaa gtgcttcggc ggcggcggcc
      361 tgttccaatg cgccgtaggc ctgcagcatt ttaggatgcg ccttacccag ctcgccgaac
      421 gattttttaa ccaatgcggt atgttctttc caatctttaa acattttctt ttcctttctc
      481 ttgcgtttaa ccctgatacg cgcttgcgta tctgttttcg atgtgcgtat tattgcaatt
      541 attcagttgt gtttctcgtt taatcatctc attttatggt tcaaaaagat ttatggacat
      601 tctggacaaa ctggtcgatt tcgcccaatt gacgggcagt gtggatgtgc agtgcctttt
      661 gggcggacaa tggtcggtac ggcatgaaac cttgcaacgc gaaggattgg tacacattgt
      721 tacatcgggc agcggctatc tctgcatcga cggcgaaact tccccgcgtc cggtcagtac
      781 aggggatatt gtatttttcc cgcgcggctt gggtcatgtg ttgagccacg acggaaaatg
      841 cggagaaagt ttacaaccgg atatgcggca gcacggtgcg tttacggtca agcagtgcgg
      901 caacggacag gatatgagcc tgttttgcgc ccgtttccgc tacgacaccc acgccgattt
      961 gatgaacggg ctgcctgaaa ccgtttttct gaacattgcc catccgagtt tacagtatgt
     1021 ggtttcaatg ctgcaactgg aaagcaaaaa acctttgacg gggacggttt ccgtggtcaa
     1081 cgcattgtcg tctgtcctgc tggtgcttat cctgcgcgcc tatctcgaac aggataagga
     1141 tgtcgaactc tcgggcgtat tgaaaggttg gcaggacaaa cgtttgggac atttaatcca
     1201 aaaggtgata gacaaaccgg aagacgaatg gaatgtcgac aaaatggtgg cggctgccaa
     1261 tatgtcgcgc gcgcaactga tgcgccgttt caaaagccgg gtcggactca gcccgcacgc
     1321 ctttgtgaac catatccgcc tgcaaaaagg cgcgttgctg ctgaaaaaaa acccggattc
     1381 ggttttgtcg gtcgcactgt cggtaggctt tcagtcggaa acgcacttcg gcaaggcgtt
     1441 caaacggcaa tatcacgttt cgccgggtca ataccggaaa gaaggcgggc aaaaataaat
     1501 cggggcttca aacgcaaatg ccgtctgaaa aggctttcat acagcatttg cgtaccgcgt
     1561 catttcaagg gctgcatctt catcacttcc atcaaaaagt tggtaaatgc ggggttgttg
     1621 ggtttgacat ccatattttt ccaacgctgc tgccagccgc gcaaggcatt ctggatatac
     1681 agcttggact gttccgtatt gattgcgccc cgctggctgt ctatcgccga acgcaggtag
     1741 atttcataca tactgtcatc gacggcattg cgtccgacca ggcgttttct gaagttgttc
     1801 agatattgcg ccgcctgaac cttggtcatt ttaccgatac ccacctgata gcccaagcgc
     1861 gtcgcttcat cgctgatttt ggcaacatcc gtccaatgcg aagaggcaag gcggaaacct
     1921 tttgcaggtg cttccgtttt gacggtattg ataggattca cggggatttc cgtcaatgtg
     1981 ggcacataaa tagactggca gccggaaaga actgccacaa tggaaagagg gataaggtat
     2041 tttttcatgc ccccattata atcaagtttg ccttgagaaa acaaattgtt cggcaagaaa
     2101 aataaaattt cggcatcaga agcaggcaaa aacacattcc acaagccttg ccgcaaggtt
     2161 tacaatccga ccgtccttat cgcaacgacc gtttatggat accgcaaaaa aagacatttt
     2221 aggatcgggc tggatgctgg tggcggcggc ctgctttacc attatgaacg tattgattaa
     2281 agaggcatcg gcaaaatttg ccctcggcag cggcgaattg gtcttttggc gcatgctgtt
     2341 ttcaaccgtt gcgctcgggg ctgccgccgt attgcgtcgg gacaccttcc gcacgcccca
     2401 ttggaaaaac cacttaaacc gcagtatggt cgggacgggg gcgatgctgc tgctgtttta
     2461 cgcggtaacg catctgcctt tggccaccgg cgttaccctg agttacacct cgtcgatttt
     2521 tttggcggta ttttccttcc tgattttgaa agaacggatt tccgtttaca cgcaggcggt
     2581 gctgctcctt ggttttgccg gcgtggtatt gctgcttaat ccctcgttcc gcagcggtca
     2641 ggaaacggcg gcactcgccg ggctggcggg cggcgcgatg tccggctggg cgtatttgaa
     2701 agtgcgcgaa ctgtctttgg cgggcgaacc ctgctggcgc gtcgtgtttt acctttccgt
     2761 gacaggtgtg gcgatgtcgt cggtttgggc gacgctgacc ggctggcaca ccctgtcctt
     2821 tccatcggca gtttatctgt catgcatcgg cgtgtccgcg ctgattgccc aactgtcgat
     2881 gacgcgcgcc tacaaagtcg gcgacaaatt cacggttgcc tcgctttcct atatgaccgt
     2941 cgttttttcc gccctgtctg ccgcattttt tctgggcgaa gagcttttct ggcaggaaat
     3001 actcggtatg tgcatcatca tcctcagcgg cattttgagc agcatccgcc ccactgcctt
     3061 caaacagcgg ctgcaatccc tgttccgcca aagataaaaa atgccgtccg aacatccttc
     3121 agacggcata tcgggcttta tttccccgcc ttcacatcct gccactggcg caccataaac
     3181 ttcaatgccg ccggctggat aggcaccatg ataaagctgt ttttcaaatc ctcctcggtt
     3241 gggaaaatcg tattgtcgtt tttaaattcg tcttccatca gctcacgcgc cggcttgctc
     3301 gaaggcgcat aagtaacgaa attgccgttt ttcgccgaca cttccgggtc gaggaagtcg
     3361 ttgatgtatt tgtgcgcgtt ggcgacgttt ttcgcatctt tcggaatcac gaaagaatcc
     3421 acccaaatcc ccacgccctc tttgggcatc atcacgcgga ttttttcctt gccgcccgct
     3481 tcttcggcac ggcgtttggc gatgttcaaa tcgccgccga aaccgattgt tacgcaggta
     3541 tcgccgcgcg ccaaatcatc gataaagccg gacgaagtaa agcgtttgat attggggcgg
     3601 tttttcttga gcagggcggt tgcctccctg atgtcttccg tattgctgct gttcgggttt
     3661 ttacccaaat agttcaacac cataggatag atttccgccg cgctgtctaa ataactgata
     3721 ccgcattgtt tgagtttgga cgtgtattcg gggtcgaaca ccaaatccca ctggttgtcc
     3781 ggcagcttgt ccgtacccaa agcctttttc acgcgttcgg tattgatggc gaaggtattt
     3841 gtcccccaat aaaacggcac ggcgtattcg tggccgggat cgaccccgtc catcagcctc
     3901 atcatttcgg gattgaggtg tttataattg ggaatcagcg atttatcgat tttctgatac
     3961 gcacctgcct taatctgcct gcccacaaac gcattggacg gcgcgacaat gtcgtaaccg
     4021 gattttccgg tcagcacctt gctttccagc gtttcatcgc tgtcgtacac atcataagta
     4081 accttgatgc cgtttttctt ttcaaaatcg gcaacggttt ccggatcgac gtattccgac
     4141 cagttgtaaa ttttcaatac gtttcggttt tccgccggcg ccggtttttc ggcaggcggt
     4201 ttgtccgaac cgccgcacgc tgcaagcagc aaagcagtca ggacggcgag tggcagatgt
     4261 ttggccatta tcattccttg catatcgggt tggagaaagc ggtcattata gccgatattg
     4321 gcaacagggc ttcagacggc attcaaaatc ccgccacacc cttccgaaaa ccgccgcttc
     4381 catagctaga aacagggatt tgcggtaaga taccgccgtt cgttttccct gcttttacca
     4441 tgacaagaca tttgagagac attgaaaaaa ttatgaaaac ctccgaactg cgccaaaaat
     4501 tcctaaaatt ttttgaaacc aaaggccaca ccgtcgtccg ctcttccagc ctcgtgccgc
     4561 acgacgaccc gaccctgctg tttaccaacg cgggcatgaa ccagtttaaa gacgtattct
     4621 taggtttcga caaacgcccg tacagccgcg ccaccaccgc gcaaaaatgc gtacgcgcag
     4681 gcggcaagca caacgacttg gaaaacgtcg gctacaccgc ccgccaccac accttctttg
     4741 aaatgatggg caacttctcc ttcggcgact acttcaagcg cgacgcgatc cacttcgctt
     4801 gggaatttct gacttccccc gaatggctca atatccccaa agacaaactg ttggcgaccg
     4861 tttacgcgga agacgacgaa gcctacaaca tctggttgaa cgaaatcggt atgccgtccg
     4921 agcgcatcgt ccgcatcggc gacaacaaag gcgcgaaata cgcgtccgac aacttctggc
     4981 aaatgggcga caccggccct tgcggcccct gctccgaaat tttctacgac cacggcgaag
     5041 aaatttgggg cggcattccc ggcagccccg aagaagacgg cgaccgctgg atcgaaattt
     5101 ggaactgcgt attcatgcag ttcaaccgcg acgaacaagg caatatgaat ccgctgccca
     5161 agccgtccgt cgataccggc atgggcttgg aacgcatggc cgccgttatg cagcatgttc
     5221 acagcaacta cgaaatcgac ttgttccaag acctgctcaa agccgttgcc cgcgaaaccg
     5281 gcgcagcttt cagcatggaa gaaccaagcc taaaagtcat cgccgaccac atccgctcct
     5341 gctcattcct gattgcagac ggcgtattgc cttccaacga aggccgcggc tacgtattgc
     5401 gccgcattat ccgccgcgcc gtgcgccacg gttacaaact gggtcaaagc aaaccgttct
     5461 tccacaaact ggtggccgat ttggtcaaag agatgggcga tgcctaccct gaattgaaag
     5521 aaaaacaagt tcaaatcgaa gaagcgttga aaaacgaaga aagccgtttt gcccaaactc
     5581 tggaaaccgg tatggctttg ttggaaaacg cgcttgccaa aggcagcaaa aaactcgacg
     5641 gcgaaatcat cttcaaactc tacgatacct acggtttccc atacgacttg actgccgaca
     5701 tctgccgcga acgcaatatc gaactggacg aagcaggctt cgagcgcgaa atggaagccc
     5761 aacgcgcacg cgcacgcgcc gcacaaagct tcaaagccaa cgcccaactg ccttatgacg
     5821 gtcaagacac cgagtttaaa ggttatagcg aacgccaaac cgaatccaaa gtcctcgccc
     5881 tctacaaaga cggcgagcaa gtcgacgaat tgaacgaagg cgacagcggc gcagtcgtca
     5941 tcgactttac cccgttctat gcagaatccg gcggccaagt cggcgatgtc ggctatatct
     6001 tctcaggcga aaaccgcttt gaagtacgcg atacccaaaa aatcaaagcg gccgtattcg
     6061 gtcaattcgg cgtacaaact tcaggccgtc tgaaagtcgg cgacagcgtt accgccaaag
     6121 tggacgacga aatccgcaat gccaatatgc gcaaccacag cgcaacccac ttgatgcaca
     6181 aagccctgcg cgatgtattg ggcagacacg tcgaacaaaa aggctctttg gttaccgccg
     6241 aatccacccg tttcgacatt tcccatcccc aagcggtaac tgccgaagaa atcgccgaag
     6301 tcgaacgccg cgtcaacgaa gccgttttgg cgaacgttgc cgtcaacgcc gccattatga
     6361 gcatggaaga cgcgcaaaaa accggcgcca tgatgctctt cggcgaaaaa tatggcgacg
     6421 aagtacgcgt attgcaaatg ggcggtttct ctaccgaatt gtgcggcggc acgcacgttt
     6481 cacgcaccgg cgacatcggc ctcttcaaaa tcatcagcga aggcggtatt gccgcaggcg
     6541 tgcgccgtat cgaagccatc accggcctga acgcactcaa atgggcgcaa gagcaagagc
     6601 gtttggtgaa agacatcatt gctgaaacca aagcccaaac cgaaaaagac gtactggcga
     6661 aaatccaagc aggcgcggca cacgccaaag cattggaaaa agaattggca cgcgccaaag
     6721 ccgaactcgc cgtccacgca ggcgcaaaac tcttggacga cgcaaaagac ttgggcgcag
     6781 ccaaactcgt tgccgcccaa atcgaagccg acgcagccgc cctgcgcgaa atcgtaaccg
     6841 acctgaccgg aaaatccgac aacgccgtga ttcttttagc ggcagtaaac gacggcaaag
     6901 tctccctgtg cgccggcgta tccaaagccc tgaccggcaa agtcaaagca ggcgatctgg
     6961 ttaaatttgc agccgaacaa gtcggcggca aaggaggcgg cagaccagat ttggcacagg
     7021 cagggggcac ggatgccggc aaattgcccg ccgtgttgga tagcgtgaaa gactgggtcg
     7081 gcgcgaagct ggtttgatgt gggaaaggca gcctgaaagg gattcaggct gccttttgtg
     7141 ttaaagatgc cgtctgaaag atattttcag acggcctctg tcagtttatt tggctttata
     7201 cctaccattg aatagcgatt cagaaggtat ccagccatct gccaaatcat ccaacatctt
     7261 aatccaatac tctaggcgtt tttctgtcgg gacgctttct ccccaatatt cgacaattag
     7321 agcatcatcc atttccaaag cagctttttc aatttcatgc tcaatcaatt ttaaagattt
     7381 ttctacatag tttccgccac ggtagtcttc cgccgagttg gcaacgctgc ccgcactgaa
     7441 taagtcccgc gcctgatgac aaagcacacc gcgataggta atcagataca ggacggcatt
     7501 atcgtatttg tgcttcgccc tgcctgagca gacaatacgg ggggagacta atgctgcttc
     7561 agctcggagg cggatttttt cttcctgcgg cagggaagtg taaaggcgca cttccaaagg
     7621 cagatcatgg ctgtctactg cgtcaatgtc ttctatccac cataaccgct cgccttcttt
     7681 cagcctgtta cgggcatatt ttcggatata ttccattttt tcatgcatat ccaaatcggc
     7741 aaattcagca taggaaatac cgaaaccctc aaacagagac ggtcgatcag attctatttc
     7801 tacctcaaag cgcggaacat gcgatgtgcg gacatgaatt acgctatctt cgtaaagttg
     7861 ccatttcaca tcgggaatgc cccccatttt tccgaatacc acatagatat gctgtacacc
     7921 gtcagctttg tttttctctt ggatactgtt tgctacgctg cgccaagtat cttttagcgt
     7981 gaatttgact tctacaccat attcccctat tggaacatcg gggaaaattt gcggcacagg
     8041 ttcaggattg ataactatgt cagcataagc gggaattttt gcaatgcaca gcgcacgaac
     8101 tctgttttca aaaatatctt gggatttgaa aggtgcgttt tttgcctctt gcctcaatac
     8161 ggtgcaaacc tcgtctaaaa acttctcaaa ctcctttttt gtcagcataa tgcattacca
     8221 cttaaaaata taaagtagta attttatctt atttaacagg gttatttaag tgccttacta
     8281 acggcggcgg cgatgtgcca ccctaaaaca ggagggacgg cgttgccaat ttgccgttct
     8341 gtggcacgca attttgcctg gaaaataaaa ttgtcgggaa acgattggat gcgcgccgcc
     8401 tcacgcatgg agatgcggcg gggtaattcg taatgccact gtatgtttcc atggcattct
     8461 gccctaatag tgtagcccgc cctttcggca tccaattttc gactaccttg atcggggctt
     8521 ttttctgctc tactccaaat atggttggca atttcgtctt ctactttgtc gaccaaatcg
     8581 cctatagcct gtctagctgt tacatagctg ttgctggtat ttgttttttc aatctgtatt
     8641 tcgggaattt caggtagcct tccaacgatg ataactcgct cccgagtctg tggaacaccg
     8701 taatcggctg cattcagcaa gtagtaatct acctgataac ccaaattgcg aaaatctgaa
     8761 agcactgttt ccaaatcttt ccgatgatgc ttcatcagta gccctttgac attttcagca
     8821 acaaatattt tggggcgaac gcgttcaaca gcagacaaca tggctttata cagcccgctg
     8881 cggctgcctg aaatacctgc acctttacca ttaatagaaa tatcctgaca aggaaagcca
     8941 ccgataatga tgtctgcgct agtgggtatt tcatccaaat gctgccaaat atcaccatgt
     9001 acaatgtgat ttcctaagtt gtggcggtag gttctaacag cgtgttcgtc gatttcgttc
     9061 gcccaaataa tatcaaaatc atgtttgtca taagtacggt ttaaaaactc aaagcccccc
     9121 agaaaaccca aatccattcc gccacaaccg ctaaataaag aaataatttt atattttttt
     9181 tcgcggtctt cttgcttttc ctgtttggtc attaactcca tacatttaag ataaaaagca
     9241 tgggaaaaag tacctctatt tactttgtta caaattgcat ttgccgtttc actttcccct
     9301 tgctccaaga ataattctga taattgtata aagccaattc catgctcatg cattttggct
     9361 tttatggcat ctccagctaa cttgttccaa ttttttcgtg caaattcggt catggttaat
     9421 ctttcagtca ttcataaatg acattatttt agcgtttttt ataatttaag ccaagattta
     9481 aaatctacct ttaggtttac aggccgtctg aaaacaaaaa tctcgttttc agacgacctt
     9541 tttccgctaa aatcccccta ccgtccaacc cgaaacaagg agaaccatca tgcaagttcc
     9601 tacttccgcc atcatcaacg gcgaatttgc cgacaaatac ggcaaacgcg gcagcaagcc
     9661 gtagccagca cccctgtcaa ccgcgtgcgt ggctagacca cacaccctac cactgcgggc
     9721 gacgcaaacc ttaagattga ggtgtagggt gtgtgcggta cgcacgcacg cggtttttgt
     9781 tactaccgaa tgattccaaa ccatgccgta atccagtcag cagcaaacgc tgcttgggtc
     9841 atgtaccaac aaaactcaat atcaaaggcc gtctgaagaa taattttcag acggcttctc
     9901 tctatcaaaa gcagcctgca cattcaaaaa tcgaagtgca ggctgctttt tgtgatgatt
     9961 ggaaaaaaca cacactattt gagacctttg caaaattccc caaaatcccc taaattccca
    10021 ccaagacatt taggggattt ctcatgagca ccttcttcca gcaaaccgcc caagccatga
    10081 ttgccagaca catcgaccgt ttcccactat tgaagttgga ccaggtgatt gattggcaac
    10141 caatcgaaca
//
LOCUS       DAXIFD010000067        10052 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.067, whole genome shotgun sequence.
ACCESSION   DAXIFD010000067 DAXIFD010000000
VERSION     DAXIFD010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10052
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.067"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            250..1149
                     /gene="crgA"
                     /locus_tag="ACFOCN_001143"
     CDS             250..1149
                     /gene="crgA"
                     /locus_tag="ACFOCN_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151940473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator CrgA"
                     /protein_id="HFC6970298.1"
                     /translation="MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEK
                     LGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMP
                     MVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLF
                     DSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHF
                     TASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDK
                     AVNLRLRVFLDFLVEELGNNLCG"
     gene            complement(1376..4591)
                     /gene="carB"
                     /locus_tag="ACFOCN_001144"
     CDS             complement(1376..4591)
                     /gene="carB"
                     /locus_tag="ACFOCN_001144"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HFC6970299.1"
                     /translation="MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL
                     ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM
                     EVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFKLDE
                     LRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQ
                     ESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEI
                     CAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEV
                     REHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLR
                     QPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSE
                     DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEE
                     IQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLA
                     KVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGV
                     GASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQVLGYGICATRGTA
                     QYLTEQGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQ
                     QRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN"
     gene            complement(4598..5146)
                     /locus_tag="ACFOCN_001145"
     CDS             complement(4598..5146)
                     /locus_tag="ACFOCN_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970300.1"
                     /translation="MRTIFFSGSRSISRLNPQIRERINNILSNNFDIVIGDANGADKA
                     IQKFLQEQDYANVHIYFSGKIYRNNVGNWQFVQVDSKGTGRVFYTAKDKKMAEIADYG
                     FILWDGKSIGSLNNIAELLQLNKPSLVYHSQTKEFFKIKSSADLENILSNIEDDVLAS
                     ILEKGNTFLKSYVTKQPSLIQE"
     gene            complement(5149..5712)
                     /locus_tag="ACFOCN_001146"
     CDS             complement(5149..5712)
                     /locus_tag="ACFOCN_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFC6970301.1"
                     /translation="MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGE
                     WVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDR
                     LNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGA
                     TLEISTEKLFSKNARSVIVLAMTKTRG"
     gene            complement(6119..6286)
                     /locus_tag="ACFOCN_001147"
     CDS             complement(6119..6286)
                     /locus_tag="ACFOCN_001147"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970302.1"
                     /translation="MADFDWIIENNRIKPTELSIYKGRLKNKKQPAQPVFPAEPLIPT
                     AAPSSLPVGKR"
     gene            complement(6290..6679)
                     /locus_tag="ACFOCN_001148"
     CDS             complement(6290..6679)
                     /locus_tag="ACFOCN_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HFC6970303.1"
                     /translation="MSTHEKLLTADNPVLHQRAKAMRQEMSEAEAKLWQHLRAGRLNG
                     YKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWN
                     HEILQQTNDVLTEILLVLQELEKQAAR"
     gene            complement(7271..7396)
                     /locus_tag="ACFOCN_001149"
                     /pseudo
     CDS             complement(7271..7396)
                     /locus_tag="ACFOCN_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687733.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
     gene            complement(7442..8575)
                     /gene="carA"
                     /locus_tag="ACFOCN_001150"
     CDS             complement(7442..8575)
                     /gene="carA"
                     /locus_tag="ACFOCN_001150"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HFC6970304.1"
                     /translation="MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILT
                     DPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYL
                     VRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAK
                     EVSCTETYEWTEGEWELGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPA
                     QTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAI
                     GAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTL
                     QGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA"
BASE COUNT         2303 a         2540 c         2560 g         2649 t
ORIGIN      
        1 aaatattcat ttgttacctc gtttgtgaat tgatgaatgt attgtgccgt tttactttat
       61 aatttaaaag tgcaaaaata agaaaacact tttgcgtcca aatgaaataa tcagatgttt
      121 caacacacgg gatgacacat aaagcgtctc cctatgtgcc gtcctgattc ggaaggggtt
      181 acacccctcc caaataaagt ctgatcctgc cgccctaaag ggcggggttc caaccgaaaa
      241 ggaaacacga tgaaaaccaa ttcagaagaa ctgaccgtat ttgttcaagt ggtggaaagc
      301 ggcagcttca gccgtgcggc ggagcagttg gcgatggcaa attctgccgt aagccgcatc
      361 gtcaaacggc tggaggaaaa gttgggtgtg aacctgctca accgcaccac gcggcaactc
      421 agtctgacgg aagaaggcgc gcaatatttc cgccgcgcgc agagaatcct gcaagaaatg
      481 gcagcggcgg aaaccgaaat gctggcagtg cacgaaatac cgcaaggcgt gttgcgcgtg
      541 gattccgcga tgccgatggt gctgcatctg ctggcgccgc tggcaacaaa attcaacgaa
      601 cgctatccgc atatccgact ttcgctcgtt tcttccgaag gctatatcaa tctgattgaa
      661 cgcaaagtcg atattgcctt acgggccgga gaattggacg attccgggct gcgtgcacgc
      721 catctgtttg acagccgctt ccgcgtaatc gccagtcctg aatacctggc aaaacacggc
      781 acgccgcaat ctacagaaga gcttgccggt caccaatgtt taggcttcac cgaacccggt
      841 tctctaaata catgggcggt tttagatgcg cagggaaatc cctataagat ttcaccgcac
      901 tttaccgcca gcagcggtga aatcttacgc tcgttgtgcc tttcaggttg cggtattgct
      961 tgcttatcag attttttggt tgacaacgac atcgctgaag gaaagttaat tcccctgctc
     1021 gccgaacaaa cctccgataa aacacacccc tttaatgctg tttattacag cgataaagcc
     1081 gtcaacctcc gcttgcgcgt atttttggat tttttagtgg aggaactggg aaacaatctc
     1141 tgtggataat tctataaaaa cctgccataa aattgttttt actcacttaa taactttgag
     1201 aaaaaataaa taagatgatg tatagccggc ggcaatggca gtctatatgg ggagcgtgat
     1261 agggctgttc cttatgtacg gcttgtgtgt ggcaacatcg gctttccaaa tgacaaaatg
     1321 ccgtctgaca ccgtaaaaaa aggtttcaga cggcattttc aacctgattc aggcatcagt
     1381 tgcggttttt caaacgcccg tgcaactctt gaacgctgta cacgcccaga tggtctcggc
     1441 ttttcgcacc ttcgctcatc gcttcgccgc cggcagtggt ggtgtattgc ggcacacgtt
     1501 gctgcaatgc gctttggcgg atgatgtggc tgtcggacac ggattgcgga tcgctggaaa
     1561 cggtattcac gaccagtgcg atttcaccgt ttttcagtgc gtcgccgatg tgcgggcggc
     1621 cttcggggac tttattgatg gtttgtacaa tcagtccctg ttcggtcagg tattgcgccg
     1681 tgccgcgtgt ggcgcagatg ccgtagccta aaacctggaa gtttttagcg gttttgataa
     1741 cgcgttcttt gtcttcttcg cgcacggaga ggaagatttt gccggtcggg ttgaggcgtt
     1801 cgcccgcacc gagttgggct ttgtagtagg cttcgccgaa gcttgcgccc acgcccatca
     1861 cttcgccggt ggagcgcatt tccggtccca aaatcgtgtc tacgcccggg aatttgatga
     1921 atgggaacac ggcttcttta acggcataga aatcggggac aacttctttt tccacgcctt
     1981 gttctttcag ggaaatacct gccatgcagc gtgcgccgac tttggcgagc ggcacgccgg
     2041 tggctttgga gacgaagggc acggtacggc tggcgcgcgg gttcacttcc aacacgaaca
     2101 ccacgccgtc ctgcacggca aactgcacgt tcatcagacc gaccacgccc agcgcgtacg
     2161 ccatcgcttt ggtttggcgg cggatttcgt cttggatttc ttcgcttaag gagtagggcg
     2221 gcagcgagca gccggagtcg ccggagtgga tgcccgcctg ttcgacgtgc tgcataatgc
     2281 cgccgataac cacgtctttg ccgtctgaaa cgcagtccac atcgacttca atcgcgttgt
     2341 tgaggaagaa atcgagcaac acggggctgt cttcggaaac ctgcacggct tcgcgcatgt
     2401 atttttgcaa ggcttcggca gagtggacaa tctgcatggc gcggccgccc aaaacataag
     2461 acgggcgcac gaccagcgga tagccgattt cttcggcttt gacgagtgct tcttcttcgt
     2521 tgtgggcgat gcggttgggc ggttggcgca gacctaagtc gttcaacact ttttggaagc
     2581 gttcgcggtc ttcggcggcg tcgatgctgt cggcggatgt gccgatgatg tttacgccgt
     2641 tttcaaccag cgcgttggcg agtttgagcg gggtttgacc gccgtaatgc acaatcacgc
     2701 cccacgggtt ttcggtgcgg acgatttcca acacgtcttc caatgtcagc ggctcgaaat
     2761 agaggcggtc gctggtgtcg aagtcggtgg acacggtttc tgggttgcag ttcaccataa
     2821 tcgtttcaaa gcccgattcg cgcagggcga gtgcggcgtg aacgcagcag tagtcaaact
     2881 cgatgccctg accgatgcgg ttcgggccgc cgccgagaat catcactttt ttacggtcgg
     2941 aaggacggga ttcgcattct tcttcgtaag tggagtaaag ataggcggtt tcggtggcga
     3001 actcggcggc gcaggtgtca acgcgtttgt aaaccggatg cagcttcagc gcgtagcggt
     3061 gttcgcgcac ttctttttcg cttacgttca acaattgtgc caaacgtttg tcggagaagc
     3121 ctttgcgttt cagacggcgt agggcggcga aatccaaatc actcaaaatg ccgtctgaaa
     3181 ccgctttttc ttccttcatc aagtcttcga tttgcgccag gaaccaaggg tcgatggcgc
     3241 agatttcgtg gatttcttcc agcgtgaagc cggcgcggaa cgcgtctgcc acaaacagca
     3301 tacgttcggg gccggggttt gccagttcgc ggcggatttc cgctttgtcg gagcttctcg
     3361 gattgaagcc gcacaagcct gtttccaagc cgcgcagggc tttttggaag ctttcctgaa
     3421 tcgtgcggcc catcgccatc acttcgccca cggatttcat ctgcgtggtc aggcggtcgt
     3481 ctgcggcagg gaatttttca aacgcaaaac gcgggatttt ggttaccaca tagtcgatgg
     3541 acggctcgaa tgacgcgggg gttttgccgc cggtgatgtc gttgcgcaac tcgtccagct
     3601 taaagccgac cgccagtttc gccgccacct tcgcaatcgg gaagcccgtc gctttggaag
     3661 ccagcgcgga cgaacggctc acgcgcgggt tcatctcaat cacaatcatc tcgccgtttt
     3721 cagggttcac cgcaaactgc acgttcgagc cgccggtatc cacgccgatt tcgcgcaata
     3781 ctgccaacga agcattacgc atgatttggt attctttgtc cgtcagcgtt tgcgcaggcg
     3841 caaccgtaat cgagtcgccc gtatgcacgc ccatcgggtc gaagttttca atcgagcaga
     3901 taatgatgca gttgtcgttc ttgtcgcgca ccacttccat ctcgtactct ttccagccga
     3961 gaacagactg ctcaatcagc agctcgtgcg taggcgacgc atcgaaaccg cgttcgcaaa
     4021 tcgccaaaaa ctcatcttta ttgtaggcaa tgccgccgcc cgaaccgccc atcgtgaaag
     4081 acggacgaat cagggtaggg aagccgacct gttcttgcgc tgccaaagct tcgttcatcg
     4141 tgtggcagac aaaagatttc gggcaggaga ggccgatttt ttccatcgct tctttaaaac
     4201 gaccgcggtc ttccgccttg tcaatcgcgt cttccgtcgc gccgatcagc tcgacattgt
     4261 atttcgccag cacgccgttg cgcgccaaat ccagcgcaca gttcagcgcg gtctgaccgc
     4321 ccatcgtggg cagaatcgca tcaggacgct ccttggcgat aatcttctcc accgtctgcc
     4381 acataattgg ctcgatgtag gtaacatccg ccatttcagg gtcggtcatg atggtggcgg
     4441 ggttggaatt caccagaatg actttatagc cttcttcacg caaagcctta caggcctgtg
     4501 cgcccgaata gtcaaattcg caggcctgac cgataacgat agggccggcg ccgatgataa
     4561 ggatggattt taggtcggta cgtttgggca tgggtggtta ctcttgaatt aaagaaggtt
     4621 gttttgttac atagctttta agaaaagtat ttcccttttc taaaattgaa gctaaaacat
     4681 catcttctat gttagataaa atattctcta aatctgcgct tgatttaatt ttaaagaatt
     4741 cttttgtttg agaatggtat acaagagaag gtttatttag ctgtaaaagt tctgctatat
     4801 tatttaatga accaatactc ttaccatccc ataaaataaa gccataatca gcaatttctg
     4861 ccattttctt atcttttgct gtataaaata cccttccagt tcctttgctg tctacttgga
     4921 caaactgcca attccccaca ttatttcggt aaattttgcc agaaaagtaa atatgcacat
     4981 tagcataatc ttgttcttgt agaaattttt ggatagcttt atcagcccca ttagcatctc
     5041 caataacaat atcaaaatta ttgctaagaa tattgttaat tctttctcgt atttgtggat
     5101 ttagtcgtga aatgctgcgt gaaccagaaa agaaaatagt gcgcattttt atcctctagt
     5161 ctttgtcatt gctaaaacaa ttacagatct agcatttttt gaaaacaatt tttcagttga
     5221 tatttccaat gttgctccgc tatcaaataa atcatcaatt actaaaatat tcttattgga
     5281 tagatctata ttgtcaattg tgatggaatt attcagtatt tctagttttt ctgatttttc
     5341 ttcaatattt ttgagtggtg tgtgtgagct agattttctt aaaataggag aatatggaat
     5401 attcaagcga tcacttagtt ctttggcaat taattgaact ggttgattaa tacgctctgt
     5461 tgtaaaaggg gcgggaacaa ttaaatttat agattctaaa ccactaaatt tttgtaaaat
     5521 atagtctacc agcaaagaaa cattttgggt ttgattacga tattttaatt gataaaccca
     5581 ttctccaatc acacttctct tgctatcaaa gtgaggatgc cctaattcat cataacctaa
     5641 caaaatactt ttttgcatat gatggtctaa agcaaatcct tttgtccagt taccatttag
     5701 ttctatcgcc atttcattga ctccttgtca aaattaagta taacgagcaa tcctagcaag
     5761 ccgtagcccg catgtagggt atgtgcggta cgcacgcacg cgttcttcat tttccctgta
     5821 accccaaccc accgcatgcg cgccttgcgg cacacactct gccgacggat tcaaaggtcg
     5881 tctgaaaaaa cgctcgcggc gtttgttaca tctgccttgc gataaaggct gcctgaaaaa
     5941 ttcccactgt tgatatttcg ggcattcttt ctcaaaccgc ctgcaaccgc aaaatctgct
     6001 gaaacctact ccctcccccg tgggggaggg ctggggagag ggcattctcc gaatttcggc
     6061 aacctttcct aacactctaa ccgccaagac acaagccttg cggcttgttg ccctctctct
     6121 aacgctttcc cacagggaga gaggacgggg cggctgttgg aattaagggt tctgcaggaa
     6181 aaacaggttg tgcgggctgt tttttgtttt tcagacggcc tttataaatg ctcaattcag
     6241 tcggctttat cctattattt tcaataatcc aatcaaaatc agccatctgc tatcgtgcag
     6301 cttgcttttc caattcttgc aacacgagca ggatttctgt cagcacatcg tttgtctgct
     6361 gtaaaatctc gtgattccaa aaccgcagta cggtaaagcc caagctgttg agatatgccg
     6421 tccgcgcgtg gtcgtatgcg gcttgttctg tgtgctgccc tccgtctgct tcgacaatca
     6481 acttgggcgt tacgcacata aaatcaacaa tatagtttcc catcggctgc tggcggcgga
     6541 atttatagcc gttcagacgg cctgcccgca ggtgctgcca caattttgct tccgcctcgc
     6601 tcatttcttg gcgcatggct ttggcgcgtt gatgcaggac ggggttgtcg gcggttaaaa
     6661 gtttctcgtg cgtgctcatt ctgttgtcgg gttactgttt gtgtaagcct tacagtttgt
     6721 tgccctctct ctgactctct cccatgggag agaggacgtg gtggcggttg ggattaaggg
     6781 ttctgcaagg aaaacaggtt gtgcaggctg ctttttattt ttcagatgac ctgaaacaac
     6841 agctgcaaat ctaagttgcc tttcaaatcg cctgcaaccg caaaatctgc tgcaaccttc
     6901 tccctccccc gtgggggagg gctggggaga gggcattctt cgaatttcgg caaccttccc
     6961 caacacccta accgcccaaa cacaagcctt gctgtttgtt gccctctctc taacgctttc
     7021 ccacagggag acaggacggg gcggctgtag tgattaaggg ttttgcaagg aaaacaagga
     7081 aaacaagttg tacaggctgt tttttatttt tcaagcgacc tgaaatcaac gcttgtaaat
     7141 ccaagtcgct tttcaaactg cctgcaaccg caaaatctgc tgcaacctac cccctccccc
     7201 gtgggggagg gctggggaga gggcattttc caagttgcgg caatctttcc caaatccctt
     7261 agtcttctaa aatacaagcc ttacggttgt tgccaaatga aacttcttcc atacccaaaa
     7321 cttgcgtgta aaacgcaatg gttcggtcaa tgtcggcaac ggtcagtacc agatggtcga
     7381 gtgcgctaat cttcatttcc cgctttcttt ttcaggcggc ggcagtgccg tctgaaagcc
     7441 attatgcccg ttttgccgct ttcatattgc caatgaattt gtcaaacaaa tagccgacat
     7501 cttgcggacc ggggctggct tcggggtggc cttggaagca gaacacaggt ttgtcggtca
     7561 gctcgatgcc ttgcaaagtg ttgtcaaaca aggatttgtg ggtaatgcgt gcgttagcgg
     7621 gcagggtgtc ggcatcaacg gcaaaaccgt ggttttggct ggtgatgacg actttgccgc
     7681 tgtccaaatc ttgcacaggg tggttcgcac cgtggtggct gaagcgcatt ttcagggttt
     7741 tcgcgccgat agcgaggctg atgagctggt gtcccaagca gatgccgaaa atcggtttgc
     7801 cgctttccat cagtttttgc acggcttcga tggcgtaggt gcaaggctcg gggtcgccgg
     7861 ggccgttgga caggaacacg ccgtcgggat tgagtgccaa cacgtcttgt gcgctcgttt
     7921 gggcggggac gacggtcagg cggcagccgc gcgaggcgag catacgcagg atgttggttt
     7981 tcacgccgaa atcgtaggcg acgacgtggt aaggctgttc gtcaggggta acgaaaccct
     8041 tgcccaattc ccattcgcct tccgtccatt cgtaagtttc cgtgcaggaa acttcttttg
     8101 ccaagtcttt gccgaccata ctgccgaacg cggcgatgag ttcttgcgct ttttcaaccg
     8161 tagcatccgc gccggtcaag atcgcgccgc cttgcgcgcc tttttcacgc aacagcgtgg
     8221 tcaggcggcg ggtgtcgatg tcggcgatgg cgacggtttt gttgcgtacc aaatagtcgt
     8281 gcaggctttc ggaggcacgg aagttgctgt gcaagagcgg caggtcgcgg ataatcaggc
     8341 cggcggcgta aacgctgcgg ctttcttcat cttcggcgtt ggtgccggtg ttgccgatgt
     8401 gggggtaggt gagggtaacg atttgtttgc agtaggacgg gtcggtcagg atttcctgat
     8461 agccggtcat cgaagtattg aacacgactt cgccggaagt cgaaccttcg taaccgattg
     8521 atgtgccgtg gaatacgctg ccgtcagcga ggacgaggag ggcgggggtg ctcatgatgg
     8581 gaatcctgtt tttaataaaa ttcttgacaa tgccgtctga agggacttcg gcagggggca
     8641 tccggtcgga aaaatccggt caaaaaaaaa cacgccgcgc aagatagacg cgtaacgtgc
     8701 ttttcgggca agtgcctata ccctgaaagc agcatatttt aagacgaaac atacccgatt
     8761 tcaagcgcaa acgcggcagg cgggctgata tgttcgcgcg aaaacggaaa tccgtggcgt
     8821 aaaaccgccc gctctgcgcc cactatgccc gttacgcatt tccccacgtc cgtccggcga
     8881 aactatggga atacccgaat cgtcattccc acgaaagtgg gaatccagtt ttttgagttt
     8941 cagtcatttc cgataaattg ccttagcatt gaatgtctag attcccgcct gcgcgggaat
     9001 gacgcgtttc atttgccccc atcccgaaaa cgcaaacaat accgtctgaa agctctgtag
     9061 ggagggcttc agcccaccga ttccatcaat cccacatttc cgccgttttc accgaatccg
     9121 ccccttttca caatccagtc ctacgcaact gaaccgtcat tcccgcgcag gcgggaatcc
     9181 ggacttgtcg gcacggaaac ttatcgggta caacggtttc ttgagattcc gcatcctaga
     9241 ttcccgcctg cgcgggaatg acggcgcata agtttctgtg ttgatttgag tctatgggaa
     9301 cggtgtagga ttggtggaat cgttggaatc ggtgggctga agcccaccct ataactcacc
     9361 ttttacgaat cctcctacac cctatacaac accttgaaaa tccaccttgt cgggaatgcc
     9421 cgaaccgtca gaaatacccg aatcgtcatt cccgcgcagg cgggaatcca gacctgtcgg
     9481 cacagaaact tatcgggcaa aacggtttct tgagattccg catcctagat tcccgcctgc
     9541 gcgggaatga cggctgcaga tgcccaacgg tctttattcc tccatctcta agatttacag
     9601 cgatacacgg gtagtttaag gaatgtccga gtcgtcattc ccacgaaagt gggaatccag
     9661 ttttttgagt ttcagtcatt cccgataaat tgccttagca ttgaatgtct agattcccgc
     9721 ctgcgcggga atgacggcat cggtttgacg gtatttaatt gaattgtgga aattgatgga
     9781 ttcagtgaga ttggcgagat gaagcctacc ctatagcccg ccttttacga acccgcccct
     9841 cccgaaaaac gcaaaaaatg ccgtccgaaa acctttcgga cggcattttc gcgtgcaaat
     9901 cagtagaaga cttcacgcca gctgattcgt ttcataccgc acatcgggcc ggtaatgtcc
     9961 aagctgtcca aatcgttcat cagcagggtg cgcacccctt tttgggagaa gcagcggttg
    10021 tttttgccgg aacgcttgcc gtcggggtct at
//
LOCUS       DAXIFD010000068         9998 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.068, whole genome shotgun sequence.
ACCESSION   DAXIFD010000068 DAXIFD010000000
VERSION     DAXIFD010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9998
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.068"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(128..1174)
                     /gene="adhP"
                     /locus_tag="ACFOCN_001151"
     CDS             complement(128..1174)
                     /gene="adhP"
                     /locus_tag="ACFOCN_001151"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HFC6970305.1"
                     /translation="MKMQAVVVNKNVAGDVEIVEREVRPLEYGEALVEVEYCGVCHTD
                     LHVAAGDYGEKPGRVLGHEGIGLVKEVADGVKNLKVGDRVSIAWLFQSCGSCEYCNTG
                     RETLCRSVLNAGYTADGGMATHCIVSADYAVKVPEGLDPAQASSITCAGVTTYKAIKV
                     SSVRPGQWIAIYGAGGLGNLGVQYAKKVFGAHVVAIDINDEKLAFAKESGADLVINAA
                     KEDAAKVIQEKTGGAHVAIVTAVSAAAFNSAVNCVRAGGRVVAIGLPPESMDLSIPRL
                     VLDGIEVVGSLVGTRKDLEEAFQFGAESLVVPKVQLRALDEAPAIFQEMREGKITGRM
                     VIDMKKECGCGHHH"
     gene            complement(1457..1846)
                     /locus_tag="ACFOCN_001152"
     CDS             complement(1457..1846)
                     /locus_tag="ACFOCN_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6970306.1"
                     /translation="MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRVRLSEVR
                     TTLLHNAQTMERYYRQKGTFKTYDKNKLKQNKYFNVTLSKVSPDHFTLQADPNPTTND
                     GETCVVTLNDGGTIAASGTNQSCPGFD"
     gene            2072..3250
                     /locus_tag="ACFOCN_001153"
     CDS             2072..3250
                     /locus_tag="ACFOCN_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacA family efflux pump subunit"
                     /protein_id="HFC6970307.1"
                     /translation="MAKMMKWAAVAAVAAAAVWGGWSYLKPEPQAAYITEAVRRGDIS
                     RTVSATGEISPSNLVSVGAQASGQIKKLYVKLGQQVKKGDLIAEINSTSQTNTLNTEK
                     SKLETYQAKLVSAQIALGSAEKKYKRQAALWKDDATAKEDLESAQDALAAAKANVAEL
                     KALIRQSKISINTAESELGYTRITATMDGTVVAILVEEGQTVNAAQSTPTIVQLANLD
                     MMLNKMQIAEGDITKVKAGQDISFTILSEPDTPIKAKLDSVDPGLTTMSSGGYNSSTD
                     TASNAVYYYARSFVPNPDGKLATGMTTQNTVEIDGVKNVLIIPSLTVKNRGGKAFVRV
                     LGADGKAAEREIRTGMRDSMNTEVKSGLKEGDKVVISEITAAEQQESGERALGGPPRR
                     "
     gene            3316..5250
                     /locus_tag="ACFOCN_001154"
     CDS             3316..5250
                     /locus_tag="ACFOCN_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MacB family efflux pump subunit"
                     /protein_id="HFC6970308.1"
                     /translation="MSLIECKNINRYFGSGENRVHILKDISLSIEKGDFVAIIGQSGS
                     GKSTLMNILGCLDTAGSGSYRIDGIETAKMQPDELAALRRERFGFIFQRYNLLSSLTA
                     RDNVALPAVYMGAGGKERSARADKLLQDLGLASKEGNKPGELSGGQQQRVSIARALMN
                     GGEIIFADEPTGALDTASGKNVMEIIHKLHEAGHTVIMVTHDPGIAANANRVIEIRDG
                     EIISDTSKNPEIPASNVGRIREKASWSFYYDQFVEAFRMSVQAVLAHKMRSLLTMLGI
                     IIGIASVVSVVALGNGSQKKILEDISSIGTNTISIFPGRGFGDRRSGRIKTLTIDDAK
                     IIAKQSYVASATPMTSSGGTLTYRNTDLTASLYGVGEQYFDVRGLKLETGRLFDENDV
                     KEDAQVVVIDQNVKDKLFADSDPLGKTILFRKRPLTVIGVMKKDENAFGNSDVLMLWS
                     PYTTVMHQITGESHTNSITVKIKDNANTQVAEKGLTDLLKARHGTEDFFMNNSDSIRQ
                     IVESTTGTMKLLISSIALISLVVGGIGVMNIMLVSVTERTKEIGIRMAIGARRGNILQ
                     QFLIEAVLICVIGGLVGVGLSAAVSLVFNHFVTDFPMDISAMSVIGAVACSTGIGIAF
                     GFMPANKAAKLNPIDALAQD"
     gene            complement(5553..6353)
                     /locus_tag="ACFOCN_001155"
     CDS             complement(5553..6353)
                     /locus_tag="ACFOCN_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HFC6970309.1"
                     /translation="MKTKLIKILTPFTVLPLLACGQTPVSNANAEPAVKAEPAVKAKS
                     AGKSVAASLKARLEKTYSAQDLKVLSVNETPIKGIYEVVVSGKQIIYTDAKGDYMLVG
                     DLINVNTRQSLTEERAADLNKIDFASLPLDKAIKEVRGNGKLKVAVFSDPDCPFCKRL
                     EHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSI
                     CDNPVAETTSLGEQFGFNGTPTLVFPNGRSQSGYSPMPQLEEIIRKNQ"
     gene            6492..8681
                     /locus_tag="ACFOCN_001156"
     CDS             6492..8681
                     /locus_tag="ACFOCN_001156"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HFC6970310.1"
                     /translation="MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMV
                     WETDIAPDMDTARILSVRTAFVEEKPLPQSWRDLLAFTSRYYHYPTGQAVFAALPQGL
                     KETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
                     AKLIEDWAEQGWIETTEAAKPVLRPYHGQASHSEFVLNANQQKASDAIQTALGRFQPF
                     LLYGITGSGKTEVYFDAMAKVLAQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLH
                     SRMAAGRRTQDYLSAMSGQAKLVIGTRLAVFTPMDDVGLIVVDEEHDGSFKQDNELRY
                     HARDLAVWRAKQSGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDIL
                     NVGRLKLDNGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCSDCGHTFGCPNCSA
                     KMVLHQRARQLRCHHCDHREPVPFKCPDCGNQDLTAVGHGTQRVEETLRAFLPKAAVV
                     RVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNADGSLYSA
                     DFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNE
                     RQMFAMPPFGFQTAVRADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLA
                     ERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRWSVDVDPQEA"
     gene            complement(8728..9801)
                     /locus_tag="ACFOCN_001157"
     CDS             complement(8728..9801)
                     /locus_tag="ACFOCN_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6970311.1"
                     /translation="MRPFCVGATVLAILGALVFFISPGVVVLHRQIFLELMLPAAYGG
                     FLTAALLDWTGFSGNLKPATTLMAVLLLVAAVLLPFLPQLAAFFVAAYWLVLLLFCAW
                     LIWLARNTDNFALLMLLAAFTVFQTAYAATGDLNLLRAQVHLNMAAVMFVSIRVSVLL
                     GAEALKECRLKDPVFIPNIVYKNIAITFLLLHAAAELWLPAQTAGFTALAVGFILLAK
                     LRELHHHELLRKHYVRTYYLLQLFAAAGYLWTGAAKLQNLPASAPLHLITLGGMMGGV
                     MMVWLTAGLWHSGFTKLDYPKLCRIAVPILFAAAVSRTVLMNVNPIFFITVPAILTVA
                     VFVLYLFTFVPIFQANAFTGDPE"
     gene            complement(9849..>9998)
                     /locus_tag="ACFOCN_001158"
     CDS             complement(9849..>9998)
                     /locus_tag="ACFOCN_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HFC6970312.1"
                     /translation="DFYQRLLSEGKPYKVAVTACMRKLLTISNARMRDYFAENDTAEN
                     GIRTA"
BASE COUNT         2361 a         2575 c         2882 g         2180 t
ORIGIN      
        1 gacgtgttgc gatacgggtt ttcagacggt atttcaaaca gaacagatta aaatcaaatc
       61 caaatccata aaaaatgccg tctgaacagc gttcagacgg catttcgatg tgtatcgcca
      121 cgtcaaatca gtggtgatga ccgcagccgc attctttttt catatcgatc accatacggc
      181 cggtgatttt gccttcgcgc atttcttgga aaatggcggg tgcttcatcc aaagcacgca
      241 gttggacttt cggcacaacc aaactttccg cgccgaattg gaaggcttct tccaaatctt
      301 tgcgcgtgcc gaccaaagag ccgaccactt cgatgccgtc caaaaccaaa cgcgggatgg
      361 acaaatccat cgattccggc ggcagtccga tggcaaccac acgtccgccc gcgcggacgc
      421 aattcacggc agagttgaat gcggcggcgg atacggcggt aacaatggct acgtgtgcac
      481 cgccggtttt ttcctgaatc actttggcgg catcttcttt ggcagcgttg atgactaaat
      541 ctgcgccgct ttctttggca aaagccagtt tttcatcgtt gatgtcgatg gcgacgacgt
      601 gtgcgccaaa tacttttttc gcgtattgga cccccaagtt gcccaaaccg cccgcgccgt
      661 agatggcaat ccactgtccc ggacgaacac tggaaacttt aatggcttta taagtggtta
      721 caccggcaca agtaatgctc gaagcttgcg caggatccaa gccttctggg actttgaccg
      781 cgtaatcggc actcacgata cagtgggtcg ccatgccgcc gtcggcagta tagccagcgt
      841 tcaatacaga gcggcacagg gtttcgcggc cggtattgca gtattcgcaa gagccgcagc
      901 tttggaacag ccaggcgatg ctgacgcggt cgccgacttt cagatttttc acaccgtcgg
      961 caacttcttt aaccaaaccg atgccctcgt gtcccagcac gcggcccggt ttttcgccgt
     1021 agtcgcctgc cgcaacgtgc aggtcggtgt ggcacacgcc gcaatattcg acttcgacca
     1081 acgcctcgcc gtattccaac gggcgaacct cgcgttcgac tatttccaca tcgcccgcta
     1141 catttttatt cacaacaact gcctgcattt tcatgattgc gctccttagt tacggcaaaa
     1201 aaacctgtaa acggaatgtt gtccgatata agggtaagca tacgcttccg catctcacag
     1261 gtcaagtggt atgttgttga aaaatataga ttatatgtta tattataaca tcttggaaag
     1321 gcacggcatc ggggcggttg ccggatgagg ggcggcaggt ttcaagtttg aaaaaccgga
     1381 cggcaaaccc gtaaaaatgc cgtctgaagc tgtgtccgga cggcatcttt acgggtttgc
     1441 gggcttcggc ggaggattag tcgaagccgg ggcaggattg gtttgtaccg gaagcggcaa
     1501 tggtaccgcc gtcgttgagc gtaacgacgc aggtttcgcc gtcgttggtg gtgggattgg
     1561 ggtcggcctg aagggtaaag tggtcggggc tgactttgct taaggtaacg ttgaaatatt
     1621 tgttttgttt cagtttgttt ttgtcgtagg ttttaaacgt ccctttttgg cggtagtaac
     1681 gttccatggt ctgcgcgttg tgcagcaggg tcgtcctgac ttccgacagg cggacgcgcc
     1741 ggatgtaggt tttataggaa gggtaggtga tgagcgtcag gatgccgagg atggcgacgg
     1801 caatcatcag ctcgagcagc gtaaagcctt tttgaacgtt tttcatagca atgtgtttcc
     1861 atttgtttgt cggtcggcga cattataacg ccgtatcgga aatggcggaa tatgtaaacg
     1921 gattgaaatt ttcgggaaag cagattgtat aagccattta aaacaaatgg ttatttttat
     1981 tgtcggcagt ttgccgcctt ggatggggca gggacttgcg gtagaatccg cttccgattt
     2041 atgggattga cgcatacaga gaattgaaaa catggcaaaa atgatgaaat gggcggctgt
     2101 tgcggcggtc gcggcggcag cggtttgggg cggatggtct tatctgaagc ccgagccgca
     2161 ggctgcttat attacggaag cggtcaggcg cggcgacatc agccggacgg tttctgcaac
     2221 aggggagatt tcgccgtcca acctggtatc ggtcggcgcg caggcatcgg ggcagattaa
     2281 gaaactttat gtcaaactcg ggcaacaggt taaaaagggc gatttgattg cggaaatcaa
     2341 ttcgacctcg cagaccaata cgctcaatac ggaaaaatcc aagttggaaa cgtatcaggc
     2401 gaagctggtg tcggcacaga ttgcattggg cagcgcggag aagaaatata agcgtcaggc
     2461 ggcgttgtgg aaggatgatg cgaccgctaa agaagatttg gaaagcgcac aggatgcgct
     2521 tgccgccgcc aaagccaatg ttgccgagct gaaggctcta atcagacaga gcaaaatttc
     2581 catcaatacc gccgagtcgg aattgggcta cacgcgcatt accgcaacga tggacggcac
     2641 ggtggtggcg attctcgtgg aagaggggca gactgtgaac gcggcgcagt ctacgccgac
     2701 gattgtccaa ttggcgaatc tggatatgat gttgaacaaa atgcagattg ccgagggcga
     2761 tattaccaag gtgaaggcgg ggcaggatat ttcgtttacg attttgtccg aaccggatac
     2821 gccgattaag gcgaagctcg acagcgtcga ccccgggctg accacgatgt cgtcgggcgg
     2881 ttacaacagc agtacggata cggcttccaa tgcggtctac tattatgccc gttcgtttgt
     2941 gccgaatccg gacggcaaac tcgccacggg gatgacgacg cagaatacgg ttgaaatcga
     3001 cggcgtgaaa aatgtgctga ttattccgtc gctgaccgtg aaaaatcgcg gcggcaaggc
     3061 gtttgtgcgc gtgttgggtg cggacggcaa ggcggcggaa cgcgaaatcc ggaccggtat
     3121 gagagacagt atgaataccg aagtaaaaag cgggttgaaa gagggggaca aagtggtcat
     3181 ctccgaaata accgccgccg agcaacagga aagcggcgaa cgcgccctag gcggcccgcc
     3241 gcgccgataa acgaatatgc cgtctgaaca cggaaacggt ttcagacggc atttgttatt
     3301 gatttacgga atattatgag cttgatcgaa tgtaaaaaca tcaaccgcta tttcggcagc
     3361 ggcgagaacc gcgtccatat tttgaaagac atcagcctgt cgatagagaa gggcgatttt
     3421 gtcgccatca tcgggcagtc cggttcgggc aagtccacgc tgatgaacat actcggttgt
     3481 ttggataccg ccggttccgg ttcgtaccga atcgacggca tcgaaactgc caaaatgcag
     3541 cctgacgaac tggcggcatt gcgccgcgaa cgcttcggct ttatcttcca acgctacaac
     3601 ctcttaagct cgctgaccgc aagggataac gtcgcgctgc cagccgtcta tatgggcgcg
     3661 ggcggcaaag agcgttccgc gcgggcggac aaactcttgc aggatttggg tttggcaagc
     3721 aaagagggca acaagcccgg cgaactctcg ggcggacagc agcagcgcgt ctccatcgcc
     3781 cgcgccctga tgaacggcgg agaaatcatc ttcgccgacg agccgaccgg cgcactcgat
     3841 accgccagcg gcaaaaacgt gatggaaatc atccacaagc tgcacgaagc cgggcatacc
     3901 gtcattatgg tcacgcacga ccccggcatc gccgccaatg ccaaccgcgt catcgaaatc
     3961 cgggacggcg aaatcatttc cgacacctcg aaaaatcccg aaatccccgc aagcaatgtc
     4021 gggaggattc gggaaaaagc ctcgtggtcg ttttattacg accagtttgt cgaagccttc
     4081 agaatgtcgg tgcaagcagt attggcgcac aaaatgcgtt cgcttctgac gatgctcggc
     4141 atcatcatcg gtatcgcttc ggttgtctcc gtcgtcgcat tgggcaacgg ttcgcagaaa
     4201 aaaatccttg aagacatcag ttcgataggg acgaacacca tcagcatctt cccggggcgc
     4261 ggcttcggcg acaggcgcag cggcaggatt aaaaccctga ccatagacga cgcaaaaatc
     4321 atcgccaaac aaagctacgt tgcttccgcc acgcccatga cttcgagcgg cggcacgctg
     4381 acctaccgca ataccgacct gaccgcttct ttgtacggcg tgggcgaaca atatttcgac
     4441 gtgcgcggac tgaagctgga aacggggcgg ctgtttgacg aaaacgatgt gaaagaagac
     4501 gcgcaggtcg tcgtcatcga ccaaaatgtc aaagacaaac tctttgcgga ctcggatccg
     4561 ttgggtaaaa ccattttgtt caggaaacgc cccttgaccg tcatcggcgt gatgaaaaaa
     4621 gacgaaaacg ctttcggcaa ttccgacgtg ctgatgcttt ggtcgcccta tacgacggtg
     4681 atgcaccaaa tcacaggcga gagccacacc aactccatca ccgtcaaaat caaagacaat
     4741 gccaataccc aggttgccga aaaagggctg accgatctgc tcaaagcgcg gcacggcacg
     4801 gaagatttct tcatgaacaa cagcgacagc atcaggcaga tagtcgaaag caccaccggt
     4861 acgatgaagc tgctgatttc ctccatcgcc ctgatttcat tggtagtcgg cggcatcggc
     4921 gtgatgaaca tcatgctggt gtccgttacc gagcgcacca aagaaatcgg catacggatg
     4981 gcaatcggcg cgcggcgcgg caatattttg cagcagtttt tgattgaggc ggtgttaatc
     5041 tgcgtcatcg gcggtttggt cggcgtgggt ttgtccgccg ccgtcagcct cgtgttcaat
     5101 cattttgtaa ccgacttccc gatggacatt tccgccatgt ccgtcatcgg cgcggtcgcc
     5161 tgttcgaccg gaatcggcat cgcgttcggc tttatgcctg ccaataaagc agccaaactc
     5221 aatccgatag acgcattggc acaggattga ggtttgaaca aagatgccgt ttgaagctgc
     5281 cggaccggtc attttggagc agaaacttat tggacaaaaa cggtttctta gattctacgt
     5341 tccagattcc cacttgcgtg ggaatgacgg cggtgtgttt cgtattgttc agtttattat
     5401 tttcaatcat tcaatgggtt aggatgtatt tgttggcttg ctgtactggt ttaaatttaa
     5461 tccactataa atttcagtgc ggattggttt tcaggcggca tttcccgcaa aaaaggcttg
     5521 gaattttcca agccttttgt tttgcggatg gattattgat ttttgcggat gatttcctcc
     5581 agttggggca tcgggctgta gccgctttgg ctgcgcccgt tggggaagac gagggtcggc
     5641 gtgccgttga agccgaattg ttcgcccaag gaagtggttt ccgcgacggg attgtcgcag
     5701 atgctgccgc cgaccgggaa tttgccttta cgcatccaat ccgtccacgc tttggcgcgg
     5761 tcgggctgac accataagat ttgcgccttg cgcgcggcat cagggtgcag gccggcaatg
     5821 ggcatcataa agctgtaaac cgtcacgtcg gtcatttttt caaactcgtg ttccaagcgt
     5881 ttgcagaacg gacaatcggg gtcggagaag acggcgactt tcagcttgcc gttgccgcgc
     5941 acttctttga tggctttgtc caaaggcagg gaagcaaagt cgattttgtt caaatcggcg
     6001 gcgcgttctt cagtcaggct ttggcgcgtg ttgacgttga tgaggtcgcc aacaagcata
     6061 tagtcgcctt tggcatcggt atagatgatt tgtttgccgc tgacgacaac ttcgtaaatg
     6121 cctttaatcg gtgtttcatt gacgctcaac actttcaaat cttgggcgga ataggttttt
     6181 tccaaacgcg ctttcaaaga ggcggcaacg gatttgccgg cggacttggc tttgacggcg
     6241 ggttcggctt tgacggcggg ttcggcgttg gcattggaaa cgggcgtttg cccgcaagcc
     6301 agcagcggga ggacggtaaa gggggtcaag attttgatta acttggtttt catataaaga
     6361 tgattgcgcg tgttggaaag gcggaattgt atcaaatctc tgttgcgcct gcattgcgcc
     6421 taggctcaat ttatcgtctg aaaatagctt ccgcctgtta aaatacgcaa aaaaatgatt
     6481 tgcctgcctg tatgatctac caccgcatcg ccgtaaacgt gccgctttca gacggccttt
     6541 tgacttattc ccattccgat ccgcttcctc caggaacgcg ggtgcttgtg cctttccgca
     6601 ataaaaccgt ggtcgggatg gtgtgggaaa cggatattgc gccggatatg gatacggcgc
     6661 ggattttgag cgttcggacg gcctttgtgg aagaaaagcc gttgcctcaa agctggcgtg
     6721 atttgttggc atttacgtcg cgttattacc actatccgac cgggcaggcg gtgtttgccg
     6781 cgctgccgca gggtttgaag gaaacgcgcg cggtggaaat gccgcagccg ccgttgtttt
     6841 atgctttgaa cgaagcgggc agggcgcaaa cgccgccgcc ggctcggttc aacaaaaaag
     6901 cggctttgtg ggatgcgctg ctgtcgggcg gaatgacgat ggcggcgttg aagcaggtga
     6961 acgcgcaggc ggcgaaatta atcgaagatt gggcggaaca gggttggatt gaaacgacgg
     7021 aagcggcgaa acctgtattg aggccgtacc acgggcaggc ttcgcactct gaatttgtgt
     7081 tgaatgccaa ccagcagaaa gcttccgatg ccattcagac ggcattggga cgcttccagc
     7141 cgtttctgct gtacggcatc accggcagcg gcaagaccga ggtgtatttt gatgcgatgg
     7201 cgaaagtgtt ggcgcagggg cggcaggtgt tgtttctgtt gcccgaaatc aacctcacgc
     7261 cgcagctttt gaagcgggtg gaaaaccgtt ttgccgacgt accgaccgcc gtgttgcaca
     7321 gccggatggc ggcaggcagg cgcacgcagg attatctgag cgcgatgtcg gggcaggcga
     7381 agctggtcat cggcacgcgg ctggcggtgt tcacgccgat ggatgatgtc gggctgattg
     7441 tggtcgatga ggaacacgac ggctcgttca aacaggacaa cgaattgcgc tatcacgccc
     7501 gcgatttggc ggtgtggcgg gcgaagcaga gcggctgccc gatcatattg ggcagtgcca
     7561 cccccagctt ggagagttgg cacaaggcgc aaagcggcgc gtaccgcctg ctgcaactga
     7621 ccgaacgcgc ccataccgcc gcgcaactgc cgcaagtgga catcctcaac gtaggccgtc
     7681 tgaaactcga caacggtttc tcgccgcaag ccttgcagct tttgaaacag aattttgaag
     7741 cgggcggcat gtcgctggtg tacctcaacc gtcgcggttt cgcgccagcg ctgttttgca
     7801 gcgactgcgg ccataccttc ggctgcccga actgctccgc caaaatggtg ctgcaccaac
     7861 gtgcccgcca actgcgctgc caccactgcg accaccgcga acccgtcccg ttcaaatgcc
     7921 ccgactgcgg caaccaagat ctgaccgccg tcggacacgg cacgcagcgc gtcgaagaaa
     7981 ccctgcgcgc cttcctgccc aaggcagccg tcgtccgtgt tgacagggac agcaccgcgc
     8041 acaaaaacga ctgggcggat ttgtaccgcc gcattgccga caacgaaatc gacattctgg
     8101 tcggcacgca gatgctcgcc aaagggcatg atttcgcgcg gctcaacctc gttatcgtgt
     8161 tgaacgccga cggcagcctg tacagcgcgg actttcgcgc cccggaaagg ctgttcgccg
     8221 agctgatgca ggtgtccggc agggcggggc gcgccgacaa acccggcaag gtgttgatac
     8281 agacccaact gcccgaacat cccgtcttcg ccgccgtcaa agcgcaggat tatgccgtgt
     8341 tcgccgaaaa cgaattgaac gagcggcaaa tgttcgcgat gccgcccttc ggtttccaga
     8401 ccgccgtccg cgccgatgcg ccgcgtgttg ccgatgcgat ggaatttctc aacgccgcca
     8461 aagaaaccct cgccccgctg ttgcccgaaa gcgtttccca gtttggcgcg gctccgatgc
     8521 tgatggtgcg ccttgccgaa cgcgaacgcg cgcaaatctt cctcgaatca acatcccgac
     8581 aagatttgca ccgagccgtg agtttgtggg tgcaggtgtt gcagcaaaac agggacggca
     8641 aaatccgatg gtcggtggat gtcgatccgc aggaggcttg attattggca atccgatgcc
     8701 gtctgaaaac cgtttcagac ggcattttta ttccggatcg cccgtaaacg catttgcctg
     8761 aaagatcggt acgaacgtaa agagataaag cacaaacacg gcgacggtca gaatcgcggg
     8821 gacggtgatg aagaatatcg ggttcacgtt cattaaaaca gtgcgcgaaa cggcagcggc
     8881 gaaaaggatg gggacggcga tgcggcagag tttggggtag tcgagcttgg taaagccgct
     8941 gtgccacagt ccggcggtca gccacaccat catcacgccg cccatcatgc ctccgagggt
     9001 aatcaggtgc aggggcgcgg aggcaggtaa gttttgcagt ttcgccgcgc ctgtccacaa
     9061 atagcctgcg gcggcaaaga gctggagcag gtaataagtg cggacgtagt gtttgcgcag
     9121 gagttcgtga tggtgcagtt cgcgcagttt ggcaagcagg ataaagccga cggcgagcgc
     9181 ggtaaaaccg gcggtttgcg cgggcagcca aagttcggcg gcggcgtgca agagcaggaa
     9241 agtaatggcg atgtttttat aaacgatatt tggaataaaa acagggtctt tcagacggca
     9301 ttctttaagg gcttccgcgc ccagcaaaac actcacacgt atggaaacaa acatcaccgc
     9361 agccatattt aaatgcactt gcgcgcgcaa caggttcaag tcgccggttg ccgcgtatgc
     9421 cgtctgaaaa acggtgaacg cggcaagcag catcagcagg gcgaagttat ccgtgttgcg
     9481 ggccagccaa atcaaccaag cgcagaacag caataaaacc agccaataag ccgctacaaa
     9541 gaatgcggca agttgcggta aaaacggcaa taaaacagcc gcaacaagca acaacaccgc
     9601 catcaaagta gtggcaggtt tcaggttgcc cgaaaaaccc gtccagtcca acaaagccgc
     9661 agtcaggaaa ccaccatatg ctgcaggcag catgagttct aagaagattt ggcggtgcag
     9721 gacgacgaca ccggggctga tgaaaaacac caacgcgccg agtatggcaa gcactgtcgc
     9781 gccgacgcaa aacgggcgca tagcaacagt atttttcacc ccgtcgggca aaaataccaa
     9841 aactcaaatc aagccgtccg gataccgttt tcggcagtat cgttttcggc aaaataatca
     9901 cgcatccggg cattcgatat cgtcagcagt ttgcgcatac atgccgtaac ggcaacctta
     9961 tacggcttac cctcggacag caggcgttgg tagaaatc
//
LOCUS       DAXIFD010000069         9981 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.069, whole genome shotgun sequence.
ACCESSION   DAXIFD010000069 DAXIFD010000000
VERSION     DAXIFD010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9981
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.069"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(109..1782)
                     /gene="recN"
                     /locus_tag="ACFOCN_001159"
     CDS             complement(109..1782)
                     /gene="recN"
                     /locus_tag="ACFOCN_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HFC6970313.1"
                     /translation="MLLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGL
                     LLGDKADYSQVRSGAKEAQLSALFDISHLPVLKAELYEQGLLNDGEEELSIRRIIDAK
                     GKSRSFINNQAATLAQLKSVGSQLIDIHGQNAHHSLNQEAAQRELLDAFAGSREQAET
                     VRQLYQNWANAKKALQEAQEHADAVIIERERLEWQFNELNQLDIKQGEWEALSQSHDS
                     LAHSAELLQAAEEVGSKIDGDNGIQRHIYQCQKLLANLQNIEPRFAESLNMLASIEAE
                     LGEISANMRDVAGRSDINPNELAAQEQRMGELMGMARKYRIEPEELPAKLAEIEERLQ
                     SLQAAADLDALEHNVAHNFAEYQEAAHILSAMRHQAAERLSGETTEHMQHLAMKGARF
                     DIALLPSSPTSHGLEQVQFQVAANKGNPPRPLNKVASGGELARISLALQVVASQYTQV
                     PTLIFDEVDTGIGGGVAEMVGKALRALGRKHQVLAVTHLPQVASCGENHWRVRKHSEG
                     EQTVSEISILDEIQRVEEVARMLGGEVITDTTRQHAAELLQLASKNSLF"
     gene            complement(1966..2568)
                     /locus_tag="ACFOCN_001160"
     CDS             complement(1966..2568)
                     /locus_tag="ACFOCN_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0051304 - chromosome separation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HFC6970314.1"
                     /translation="MTDKISPDALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVL
                     AQLKTRWQDRALQLVHTQEGWRFQIVQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQ
                     QPVTRGDIEGIRGVAVSQNVMQTLQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLD
                     GLEELPPLTELGELVLPDLMEMPPTDEEEPEAVPSDTLPN"
     gene            complement(2669..3610)
                     /gene="ylqF"
                     /locus_tag="ACFOCN_001161"
     CDS             complement(2669..3610)
                     /gene="ylqF"
                     /locus_tag="ACFOCN_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HFC6970315.1"
                     /translation="MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLL
                     AQLSKGKPKLKILNKQDLADPERTKVWLDHYNSRPDTRAIALDSSETGAHGKITQACR
                     AMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
                     FWLYDTPGMLWPKIIVEEGGYNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQER
                     YQADKDPSSHWDENVWLEWIAKKRGAVLSGGRINYQKAAENILTDFREGKIGRITLET
                     PNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA"
     gene            complement(3691..4545)
                     /gene="rapZ"
                     /locus_tag="ACFOCN_001162"
     CDS             complement(3691..4545)
                     /gene="rapZ"
                     /locus_tag="ACFOCN_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HFC6970316.1"
                     /translation="MKIVLISGLSGSGKSVALRQMEDSGYFCVDNLPLEMLPALVSYH
                     IERADETELAVSVDVRSGIDIGQAREQIASLRGLGHRVEVLFVEAEEAVLVRRFSETR
                     RGHPLSNQDMTLLESLKKEREWLFPLKEIAYCIDTSKMNAQQLRHAVRQWLKVERTGL
                     LVILESFGFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQEM
                     VDDIERFVTHWLPRLEDESRSYVTVAIGCTGGQHRSVYVVEKLARRLKGRYELLIRHR
                     QAQNLSDR"
     gene            complement(4526..5488)
                     /gene="hprK"
                     /locus_tag="ACFOCN_001163"
     CDS             complement(4526..5488)
                     /gene="hprK"
                     /locus_tag="ACFOCN_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HFC6970317.1"
                     /translation="MPSISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALV
                     GHLNFIHPNQIQVVGLAESEYLNRLESGETGYQFGNLFDISMSLVIVANGLPVSPGLR
                     DYCHKNDIPLLTSKLESPYLMDVLRIYLQRTLAASSVKHGVFLDVFEIGVLITGHSGL
                     GKSELALELISRGHSLIADDAVELFRIGPETLEGRCSPMLRDFLEVRGLGILNIRHIF
                     GETSIRPKKILQLIINLVEADDEYMKQLDRLSIRTETESILNVNVRSVTLPVAVGRNL
                     AVLVEAAVRNYILQLRGKDSTREFLERHQTQLKENEQNHENRPD"
     gene            complement(5492..5941)
                     /gene="ptsN"
                     /locus_tag="ACFOCN_001164"
     CDS             complement(5492..5941)
                     /gene="ptsN"
                     /locus_tag="ACFOCN_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HFC6970318.1"
                     /translation="MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADV
                     FECLFAREKLGSTGLGQGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLVFI
                     LLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEARAILTEE"
     gene            complement(6126..7016)
                     /gene="ubiA"
                     /locus_tag="ACFOCN_001165"
     CDS             complement(6126..7016)
                     /gene="ubiA"
                     /locus_tag="ACFOCN_001165"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HFC6970319.1"
                     /translation="MNPKSPLFLRLSDRLDVYLRLMRADKPIGTLLLLWPTYWALWLA
                     SDGIPDLAVLAAFTIGTFLMRSAGCVINDFADRDFDGAVERTKNRPFAQGRVKKKEAL
                     LLTAFLCLLAALCLIPLNHLTWLMSLPALFLALTYPFTKRFFPIPQLYLGLAFSFGIP
                     MAFAAVGNSVPVEAWILFTANVLWTLAYDTVYAMADKEDDLKIGIKTSAVTFGRYDIA
                     AVMLCHGGFTLLMAVLGAVIGAAWAYWTAIPIVLLLQYRQYAAIKSRVRQICFETFLA
                     NNRIGWVWFTAIFAHTFFAK"
     gene            complement(7046..7522)
                     /locus_tag="ACFOCN_001166"
     CDS             complement(7046..7522)
                     /locus_tag="ACFOCN_001166"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008813 - chorismate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HFC6970320.1"
                     /translation="MEHLFGKWLPDLPAAVSDGIDLPMSRLLKARSLTAALRALPHTF
                     SVELLKLGELETECGGRLVREVLLKLDRIPVVEARSECRIGSAFWQNILDCGTRPLGE
                     RLFQADLEGARSAFEFAVSGEGCGRYFAARRSRFSRHGEEMLLTEYFLPELKRFIG"
     gene            complement(7537..8184)
                     /gene="bioD"
                     /locus_tag="ACFOCN_001167"
     CDS             complement(7537..8184)
                     /gene="bioD"
                     /locus_tag="ACFOCN_001167"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HFC6970321.1"
                     /translation="MKGVYFVSGIDTDIGKTVATGMLAKQLLQQGKSVITQKPVQTGC
                     QDIAEDIAVHRKIMGIPMQEADKRRLTMPEIFSYPASPHLAARLDGRALDLDKIRTAT
                     QELAAQYEIVLVEGAGGLMVPLTEKLLTIDYIQQQAYPVILVTSGRLGSINHTLLSFA
                     ALKQYGIRLHSLVFNHIHDSRDAHIAQYSLSYLKCRLKADFSEAEWMELAKTDAV"
     gene            complement(8181..9482)
                     /gene="bioA"
                     /locus_tag="ACFOCN_001168"
     CDS             complement(8181..9482)
                     /gene="bioA"
                     /locus_tag="ACFOCN_001168"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HFC6970322.1"
                     /translation="MPSEHQHTSSLLDFDRTHLLHPYTSMTDPLPVYPVKRAEGVFIE
                     LADGTRLVDGMSSWWCAIHGYNHPVLNQAVETQIKQMSHVMFGGLTHEPAVELGKLLV
                     GILPQGLDRIFYADSGSVSVEVALKMAVQYRQVRGLTAKQNIATVRRGYHGDTWNAMS
                     VCDPETGMHHIFGSALPQRYFVDNPTSRFDDEWDEADLQPVRALFEVHHADIAAFILE
                     PVVQGAGGMYFYHPQYLRGLRDLCDEFDIVLIFDEIATGFGRTGKMFACEHAEVVPDI
                     MCIGKGLSGGYMTLAAAITSQKVTETISRGEAGVFMHGPTFMANPLACAVACASVKLL
                     LSQDWQANIRRIESILKGRLKAAWDIRGVKDVRVLGAIGVIELDKGVDMARFQADCVA
                     QGIWVRPFGRLVYLMPPYIISDGVLTKLADKTVQILKEHSK"
     gene            complement(9695..9934)
                     /locus_tag="ACFOCN_001169"
     CDS             complement(9695..9934)
                     /locus_tag="ACFOCN_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970323.1"
                     /translation="MNVWDIWGRMVEIYHKYKKPCLVLAVDFVMGMVFIEPNEELCIG
                     RCYAPMSESPDFANAVAMAVAMICIVWIAVLSMTD"
BASE COUNT         2312 a         2735 c         2528 g         2406 t
ORIGIN      
        1 gcacaatcac ttgttcaagt gattaagaaa gcgtgataat acggatttat ctgagttctg
       61 tctattgttt tagactttta tttttagtta ttttttaact gattgatttt aaaataaact
      121 atttttcgac gcaagttgca gcaattctgc cgcatgttgc cgcgtcgtat cggtaatgac
      181 ttctccgccc aacatacggg caacctcttc gacccgttgg atttcatcca atatactgat
      241 ttcgctgacg gtttgctctc cctcgctgtg cttgcgcacc cgccagtggt tttcgccgca
      301 ggatgcgact tgcggaagat gggtaacggc aagcacctga tgttttctgc ccaacgcacg
      361 taatgccttg ccgaccattt cagccactcc ccctccaata ccggtatcga cctcatcaaa
      421 aatcagggtg ggaacttggg tatattggct ggcaacaacc tgtaaggcaa ggctgatacg
      481 cgccaattcg ccgccggagg caactttatt cagcggacgg ggcggattgc ctttgttggc
      541 ggcaacttga aactgtactt gctccaagcc gtgcgacgtc ggggaagacg gcagtagggc
      601 aatgtcaaaa cgcgcacctt tcatggcaag gtgttgcata tgctcggtcg tttcgccgct
      661 caaacgctct gccgcctgat ggcgcatggc agaaaggatg tgggcagctt cctgatattc
      721 ggcaaaattg tgggcaacat tatgctcgag cgcgtccaaa tcggcggcag cttgcaggct
      781 ttgcaggcgt tcttcgattt ctgccaactt ggcaggcaac tcttcaggct cgatccggta
      841 tttccgcgcc atccccatca gctcgcccat gcgctgttcc tgtgccgcca attcattggg
      901 attgatgtcg ctgcgacctg ccacatcgcg catattggca ctgatttcgc ccaattcggc
      961 ttcgatgctt gccaacatat tcaggctctc ggcaaagcgc ggctcgatgt tttgcagatt
     1021 ggccaatagt ttttgacatt gatagatatg gcgttggatg ccgttgtcgc cgtcaatctt
     1081 gcttccgact tcttcggcag cctgcaacag ctcggcagaa tgggcaaggc tgtcgtggct
     1141 ttggctgagg gcttcccatt cgccttgttt aatgtccaac tgattcagtt cgttaaactg
     1201 ccattccaga cgctcccgct cgataatgac ggcatcggcg tgttcctgcg cctcttggag
     1261 ggcttttttc gcattggccc aattttgata aagctgcctg acggtttccg cctgctccct
     1321 gctacccgca aatgcgtcca acaattcgcg ctgggcggct tcctgattaa gcgaatgatg
     1381 ggcgttttgc ccgtggatgt cgataagctg gctaccgacg gatttgagtt gcgccaaggt
     1441 agcggcctga ttgttgataa agctgcggct tttgcctttg gcatcgataa tgcggcggat
     1501 actgagttct tcttctccgt cgtttaaaag cccctgttca tacaattctg cttttaaaac
     1561 aggcaaatgg gaaatatcga acaatgccga caactgcgct tcttttgcac cgctgcggac
     1621 ttggctgtaa tcggctttgt cgcccaacag cagaccaatc gcatccaaag taatggactt
     1681 gcccgcgccg gtttctccgg tcaatacggt aaagccgctt tgaaaatcca gattcagatt
     1741 ttcaacaatg acaaaatcac gcaaagaaag tgttagaagc attgtgagga ttccttagca
     1801 attctaccga caaaagcaat atcaacttta gatatacgaa ttataactaa gattttttta
     1861 aattaaaaat aagttttcct taattttgct tagtacttgt ttttatctgc ttatttgttg
     1921 caatgccgtc tgaagcaatg tgcgtttcag acggcatttg gaatttcagt tgggcagggt
     1981 atcggacggt acggcttccg gctcttcttc atccgtaggc ggcatttcca ttaaatcggg
     2041 taaaaccagt tcgcccagtt cggtcagcgg cggaagttct tccagaccgt ccaagcgcaa
     2101 atcgctgaga aaagttgccg ttgtcgccca caatgcgggt tttcccaatg tgtcccgatg
     2161 tccgatgact tcaatccacc cccgatcctg caaggtctgc atcacgttct gcgacaccgc
     2221 cacgccgcgt atgccctcga tgtcgccgcg cgttacgggc tgctggtagg cgataatcgc
     2281 cagtgtttcc atcacggcgc gggagtaacg cggcgcacgc tgttcttgca ggctgcccag
     2341 ccgctcgaat gccgtctgaa caatctgaaa acgccagccc tcttgcgtat gcaccagttg
     2401 caacgcccta tcctgccaac gcgttttcaa ctgcgccaac acatcaatca gtttgtcctg
     2461 cgacagtggc ggcacacaca attcgcgcat agatttttcg gtcagcggtt cggtttgggt
     2521 cagcagtgcg gcttcaatta gtgcgtcggg agaaattttg tcggtcatac gggtatccgt
     2581 gctgaaacgg catgggtttg gatatgccgt ctgaaatcgg ttggagtaga gagaagctgc
     2641 ctgaaaaata tttttcagac ggcattcttt atgcttccga aggcttctgc cctttacgct
     2701 ctgcttttct ggcttcgcgt atggctttga gttcggcttc tttctgacgg gcttttttga
     2761 gccaagtttc ccattggttc ggcgtttcga gggtgattct gccgattttg ccttcacgga
     2821 agtcggtgag gatgttttcg gcggcttttt ggtagttgat ccgtccgccg ctgaggactg
     2881 cgccgcgttt tttggctatc cattcgagcc aaacgttttc gtcccagtgg ctgctggggt
     2941 ctttgtcggc ttggtagcgt tcttgcaaca tagggaggta gtggcggcgg aggtagtcta
     3001 aaagttcgag ggcgacttct tcttcgtcca acgcgttgcg tccgactgcg ccgccggcgg
     3061 caaggttgta gccgccttct tcgacgatga ttttcggcca cagcattccg ggggtgtcgt
     3121 agagccagaa gtcgtcggca aggaaaaggc gttgttcggc tttggtgatg ccgggttcgt
     3181 tgccggtttt ggcggatttt ttgcctatca tgccgttgat gagggtggat ttgccgacgt
     3241 tgggaatgcc gcaaatcaag acgcgcaagg gtttgtctat gccttgccgg tggggaatca
     3301 tcgcgcggca ggcttgggtg attttgccgt gtgcgccggt ttcggaggaa tcgagggcaa
     3361 tggcgcgcgt gtcggggcgg ctgttgtagt ggtcaagcca gacctttgtg cgttcggggt
     3421 cggcaagatc ttgtttgttt aggattttaa gtttgggttt gcctttggaa agctgggcaa
     3481 gcagggggtt ttcgctggag gcgggcatac gcgcgtccag catttcaatc accatatcaa
     3541 cgctttttgc acgctcggcg atggcttttt tcgccttgtt catatggccg ggaaaccatt
     3601 ggattgccat gtctgttctt tcttttcaat atttgaaatg ccgtctgaaa cggaggacgg
     3661 ggtttcagac ggcataatgg tttgacggaa ttagcggtct gacaggtttt gcgcctgtct
     3721 gtgccgtatc agcaattcat aacgcccttt caaccttcgg gcgagttttt cgacaacata
     3781 gacggaacgg tgctgcccgc cggtacagcc gatggcgacg gtaacgtagc tcctgctttc
     3841 atcctccaaa cgcggcagcc aatgcgtaac aaacctttcg atgtcgtcaa ccatttcctg
     3901 cacaagcggc tgtccgtcca aataatccca aacgggcttg tccataccgg tgtaaggcct
     3961 caactcggga tcgtaatacg ggttgggcag actgcgcata tcgaacataa aatccgcgtt
     4021 gtttggcaca ccgtatttga acccgaagga ctccaaaatc accagcagcc cggtacgttc
     4081 gaccttcagc cactgccgga ctgcatggcg gagctgttgg gcattcatct tggaagtgtc
     4141 gatacaatag gcgatttctt taagcgggaa cagccattcc cgttctttct ttaagctttc
     4201 caacaaggtc atatcctgat tactcagagg gtggcctcgc ctggtttcgg aaaaccggcg
     4261 gaccagcacg gcctcttccg cctcgacaaa caaaacttca accctgtgcc ccagtccgcg
     4321 cagagaggca atctgttccc gcgcctgtcc gatgtctatg ccggaacgca catcgacgct
     4381 gaccgccaat tcggtttcgt ccgcacgctc gatatgatac gacaccagcg cgggcaacat
     4441 ttccaagggc aggttgtcca cgcagaaata acccgaatct tccatttggc gcagtgcgac
     4501 ggatttgccc gaaccggaca acccgctaat caggacgatt ttcatgattc tgttcgtttt
     4561 ctttaagctg cgtctgatgg cgttccaaaa attcgcgcgt actatcctta ccgcgcaact
     4621 gaagaatata attgcgcacc gccgcttcaa ccaatacggc aaggttgcgt ccgaccgcga
     4681 caggcagcgt taccgaacgg acgttgacgt tgaggatgga ttcggtttcg gtacggatac
     4741 tcaaacggtc gagctgcttc atatactcgt cgtccgcctc gaccaaattg ataatgagtt
     4801 gcaggatttt tttggggcgg atggaagttt cgccgaaaat atggcggata ttgagtatcc
     4861 ccaagccgcg cacttccaaa aaatcgcgca gcataggcga acaccgccct tccagcgttt
     4921 ccgggccgat gcggaacagc tcgaccgcat cgtcggcaat caggctgtgg ccgcgcgaaa
     4981 tcagctccaa cgccaattcg ctcttaccca aacccgaatg tccggtaatc agcacgccga
     5041 tttcaaacac atcgagaaat acgccgtgtt tgacggacga tgccgccagg gtgcgttgca
     5101 ggtaaatccg caacacgtcc atcagatagg ggctttcgag tttggaagtc agcagtggaa
     5161 tatcgttttt gtggcagtag tcgcgcagtc ccggggaaac cggcaagccg tttgccacaa
     5221 tgaccaaaga catagaaatg tcgaacaggt ttccgaactg ataacccgtt tcccccgatt
     5281 cgaggcggtt cagatattcc gactccgcca aaccgaccac ttggatttgg ttggggtgga
     5341 tgaaattcag gtgtccgacc aaagcgagga cgggcttgtc cgcctctacg ccgatacggt
     5401 tgtccgcacc cgaattgccg gcggcccagg cgagttgcag tttgtattgg ttgtcgtcaa
     5461 acagtcggcg gacagagata ctgggcatat tttattcttc ggtcaggatg gcgcgggctt
     5521 cttccgcaga agaaaccgtc atcagcgatt cgcggatgct tttttgggaa aacttgccgg
     5581 ccagtttgga caatacctcc aaatgctcac ccgtcgcatt ttccggaacc agcaagataa
     5641 aaaccaggga aaccggtttg ccgtccggtg cgtcaaatcc gacgggttcg cgcgtgcgga
     5701 tgaacgcgcc cgtcgcctgc ttcacgccgg catgacggcc gtgcgggatg gcaacgccct
     5761 gccccaaacc ggtcgaaccg agtttttcac gggcaaaaag acattcgaaa acatcagcat
     5821 gggacaatga ggattcgcgt tccaaaagca ggcccgcttc ctcaaacagc ctttttttac
     5881 tgcccacctc catatccaaa acaatatggg acaaaggcaa aatttcgccg ataaggctca
     5941 taagcttctc ttttcagaca tcgcaaaaca gaaagattgt accgactgcc ggggcaaatc
     6001 tcaatcccgc atacggtacg ggctgacata acacagcgtt ttaaaaacat attttaacgc
     6061 ttttcggcac agatagaaat gccgtccaaa gcagtttacg gctcttcaga cggcattgcc
     6121 ctgccttatt tcgcgaaaaa cgtatgggca aaaatggcgg taaaccacac ccaaccaatt
     6181 ctgttgtttg ccaaaaacgt ttcaaaacag atttgccgga cgcggctttt gatggcggca
     6241 tattggcggt attgcagcag caggacgatg gggattgccg tccaatatgc ccatgccgca
     6301 ccgataaccg cccccaatac tgccatcagc agggtaaagc cgccatgaca cagcataacg
     6361 gcggcgatgt cgtaacgccc gaacgtgacg gcggaggttt tgatgccgat tttcaaatcg
     6421 tcctctttgt ccgccatggc gtaaacagtg tcgtaagcca gtgtccataa aacattggcg
     6481 gtaaaaagta tccatgcttc aacggggacg ctgttgccca ctgcggcaaa cgccatcggg
     6541 ataccgaagg aaaaggcaag cccgagatag agttggggaa tcggaaaaaa acgtttggta
     6601 aacgggtaag tcagcgcaag aaacagggcg ggcaggctca tcagccaagt cagatgattc
     6661 agcggaatca ggcacaatgc ggcaagcagg cacaaaaatg ccgtcagcag cagggcttct
     6721 tttttcttga ccctgccctg tgcgaacgga cggtttttgg tgcgctcgac agcaccgtca
     6781 aaatcgcggt cggcaaaatc gttgatgacg caaccggcac tgcgcattaa aaacgtaccg
     6841 attgtaaacg ccgccaatac cgccaaatcg ggaatgccgt ctgaagccag ccacaatgcc
     6901 cagtaggtcg gccacagtaa aagcagcgtc ccaatgggct tgtccgcccg catcaggcgc
     6961 aggtacacat ccaaacgatc ggacagtcgt aaaaataaag gggatttagg attcatattg
     7021 ccgcacagct tgaaaaaacg gtattttatc cgataaagcg tttcagttcg ggcagaaaat
     7081 actcggtcag cagcatttcc tcgccgtgac gggaaaaccg agaacgccgc gcggcaaagt
     7141 accgtccgca tccttcgccg gaaacggcaa actcaaacgc cgaacgcgcc ccttccaaat
     7201 cggcttgaaa cagacgctcg cccaaagggc gcgtgccgca gtccaaaatg ttttgccaaa
     7261 acgccgaacc tatccggcat tcgctccttg cctcaacaac agggatacgg tccagcttca
     7321 acaaaacttc gcgcaccagc ctccctccgc attccgtctc caattcgccc agtttcagca
     7381 gttccaccga aaatgtatgc ggcaaggcgc gcaatgcggc ggtcagcgac cgggctttca
     7441 ataaccggct catcggcagg tcgatgccgt ctgaaacggc ggcgggcaag tcgggcagcc
     7501 atttcccaaa taggtgttcc atatttttcc caatctttat accgcgtctg tttttgccaa
     7561 ctccatccat tccgcttcgg aaaaatcggc tttcagacgg catttcaagt agctcaggct
     7621 gtattgggcg atgtgtgcgt cgcggctgtc atgaatatgg ttgaatacga ggctgtgcaa
     7681 gcgaatgccg tattgtttga gcgcggcgaa actgagcagg gtgtgattaa tgctgccgag
     7741 ccgaccgctg gtaacgagga tgacgggata agcctgttgc tgaatataat caatggttaa
     7801 cagcttttcc gtcagcggaa ccatcaaacc gcccgcgcct tcgaccaaga ctatttcgta
     7861 ttgtgccgcc aattcttgcg tagcggtacg gattttgtcc aagtccaaag ccctgccgtc
     7921 cagacgggcg gcgagatggg gcgaggcggg atagctgaag atttcaggca tagtcagccg
     7981 ccgtttgtcg gcttcctgca tgggtatgcc catgattttg cggtgaacgg cgatgtcttc
     8041 ggcgatgtct tggcaaccgg tttgcacggg cttttgcgta atcacgcttt tgccctgctg
     8101 caacaattgt tttgccaaca taccggtggc gacagttttg ccgatgtccg tgtctatgcc
     8161 gctgacgaag taaacgcctt tcatttgctg tgttccttca agatttgcac ggttttgtcg
     8221 gcaagtttgg tcaaaacgcc gtctgaaata atatacggcg gcatcagata taccagcctg
     8281 ccgaacgggc gcacccaaat gccctgcgcc acgcaatctg cttgaaaacg cgccatatcc
     8341 acgcctttat ccagctcgat cacgccgatg gcacccaaaa cgcgtacgtc tttcacgccg
     8401 cgaatgtccc acgcggcttt cagacggcct tttaagatgc tttcaatgcg gcggatattt
     8461 gcctgccagt cttgagacaa aagcagtttg accgaagcgc aggcaacggc acacgccagc
     8521 gggtttgcca taaacgtcgg gccgtgcata aacacgcccg cttcgccgcg cgaaatcgtt
     8581 tcggtaactt tttgcgaagt gattgctgcc gccagcgtca tatagccgcc gctcaaaccc
     8641 ttgccgatgc acataatatc cggcacgacc tccgcgtgtt cgcaggcaaa catcttgccc
     8701 gtgcgcccga atccggtggc gatttcatca aaaatcaaaa cgatatcaaa ctcgtcgcac
     8761 aaatcgcgca atccgcgaag atactgcgga tgataaaaat acatgccgcc cgcgccctgc
     8821 acgaccggct ctaaaataaa ggcggcaata tccgcatgat gcacttcaaa caaggcgcgg
     8881 acaggctgca aatccgcctc gtcccattca tcgtcgaaac ggcttgtcgg gttatcgaca
     8941 aaataacgct gcggcaacgc gctgccgaaa atatggtgca tccccgtttc cggatcgcag
     9001 acggacatcg cgttccaagt atcgccgtga tacccgcgcc gcaccgtcgc aatattctgc
     9061 ttcgccgtca acccccgcac ctgccggtat tgcaccgcca ttttcaacgc aacttccacc
     9121 gaaaccgaac ctgaatccgc ataaaaaata cggtccaacc cctgcggcaa aatcccaacc
     9181 aacaatttac ccagctccac cgcaggctca tgcgtcaaac cgccgaacat cacatgcgac
     9241 atttgtttaa tctgcgtctc aaccgcctga ttcaaaacag gatgattgta accgtgtatc
     9301 gcacaccacc aggacgacat cccgtcaacc agccgcgtgc cgtccgccaa ttcgataaac
     9361 accccttctg cacgtttgac aggataaacg ggaagcggat cggtcatgga agtataggga
     9421 tggagcagat gggtacggtc gaaatcaagt aatgatgatg tgtgttgatg ttcagacggc
     9481 ataagtttct ctcttttctt attgctgcat tcaaacgcaa acgcgtattc tactccgaca
     9541 gaccgtttcc cacacctctc catccgtttc gggcgcaaaa ccgcgaaaca aatcgtccgc
     9601 agtataagcg cacaccgttt cgcattcccc aagcccgatt ggaatcagac gacccaacgc
     9661 ccaatattgt ttcacacagc ctccgcccaa cgcttcaatc agtcatagac aaaacggcaa
     9721 tccatacgat acagatcata gcaacagcca tcgcaacagc gttagcaaaa tcaggggact
     9781 ccgacatagg cgcatagcat ctaccgatgc acagctcctc attcggctct atgaatacca
     9841 tacccatcac aaaatccacc gccaaaacca ggcacggctt cttatactta tgatagattt
     9901 ccaccatcct gccccatata tcccaaacat tcataccgca tatcccgcag gcaacaaatt
     9961 ccgattgaag gttacagccc t
//
LOCUS       DAXIFD010000070         9816 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.070, whole genome shotgun sequence.
ACCESSION   DAXIFD010000070 DAXIFD010000000
VERSION     DAXIFD010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9816
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.070"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            47..1444
                     /gene="aspA"
                     /locus_tag="ACFOCN_001170"
     CDS             47..1444
                     /gene="aspA"
                     /locus_tag="ACFOCN_001170"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HFC6970324.1"
                     /translation="MTVRIEHDLLGDREIPAEVYWGIHTLRAIENFKISTQKISDVPQ
                     FVRSMVMVKKATAQANGELGAVKPEIAAAIEKACDEVLLNNRCLDQFPSDVYQGGAGT
                     SVNMNTNEVIANLALEALGYEKGRYDIVNPMDHVNASQSTNDAYPTGFRLAVYYSIGE
                     LLDKLTVLKNAFTAKAEEFKDVLKMGRTQLQDAVPMTAGQEFQSFQVLLEEEILNLDR
                     TRQLLLEVNLGATAIGTGVNTPKGYAELVVKKLSEVSGLPCKLTENLIEATSDCGAYV
                     MVHGALKRTAVKLSKICNDLRLLSSGPRAGLKEINLPELQAGSSIMPAKVNPVIPEVV
                     NQVCFKVIGNDTTITFAAEAGQLQLNVMEPVIAQCMFETISLLGNAAVNLSDKCVKGI
                     TVNREICERYVFNSIGLVTYLNPYIGHHNGDLVGKICAQTGKGVREVVLERGLLSEEE
                     LNRILSPENLMNPHL"
     gene            complement(1516..2391)
                     /locus_tag="ACFOCN_001171"
     CDS             complement(1516..2391)
                     /locus_tag="ACFOCN_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HFC6970325.1"
                     /translation="MAYLLISIVFSVSVSILLKMARKKKIDIAQAVAVNYVVAVILTL
                     LVLKPDIGNIGAFLPTWPLFAALGVLLPSVFVIMGKSVEAAGIVKSDAAQRLSLFLPI
                     VAALTLFGEKLSEGKLIGLCLAFAALFCLLWKHGGGKKSGSAWRQAALLLGVWAGYGI
                     IDILFKQLAKSGTAFSGNLLVAFVLAGVLMFACLFAKSVRWRVESVVGGILLGGLNFM
                     NIVTYITAHQMMKDNPTLVFAGMNIGVIVLGTLSGALFFKEKINTINTAGIVLALCSI
                     ACLFYWAEVKALFGI"
     gene            complement(2393..3085)
                     /locus_tag="ACFOCN_001172"
     CDS             complement(2393..3085)
                     /locus_tag="ACFOCN_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HFC6970326.1"
                     /translation="MDKDLYAVLGVSPQAGADEIKRAYRKLAMKYHPDRNPGNPQAEE
                     KFKEIQRAYDTLSDLSKRTQYDASFRGHEERGRQEEAFRREQARREQFYREQMRREQA
                     LRQAFERQASRSRHAYEPSGGGSGRNYVLAAYILFGLGAIMLFMPIVGVILAYMKRNS
                     LDSIVYAAHTEYLIKTFWRTFWLYILGALTALLGIGVLIIIATNVWYFYRIIAGFIRF
                     NGGRAVAPEKWI"
     gene            complement(3107..3586)
                     /gene="ybaK"
                     /locus_tag="ACFOCN_001173"
     CDS             complement(3107..3586)
                     /gene="ybaK"
                     /locus_tag="ACFOCN_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HFC6970327.1"
                     /translation="MSKQTYPVTPAVRVLRENGIKFEPFIYPYEEHGGTAQFAHLFGK
                     DEHLVIKTIVLQDENGKGLIVLMHGDKQISTRNLARHLGAKHIEPATPAQANKWTGYL
                     VGGTTPFGIRTKLDIYVEQSVMDLETIYINGGKRGFIIGIRPGDLNILNPKTIQAAV"
     gene            3662..4024
                     /locus_tag="ACFOCN_001174"
     CDS             3662..4024
                     /locus_tag="ACFOCN_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6970328.1"
                     /translation="MDIRYFGTTPRYSEAVGANGLIFLSGMVPENGETAAEQTADVLA
                     QIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAGRTPARACVEARLARP
                     EWRVEIKITAVKKDAATE"
     gene            4059..4922
                     /locus_tag="ACFOCN_001175"
     CDS             4059..4922
                     /locus_tag="ACFOCN_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HFC6970329.1"
                     /translation="MKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYN
                     TPKGRVIANMIVVNRGDDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVGAEL
                     AASAEPLAAQEPCLAFTAECGSDGICSVVLPHRGILHIAPETALPPYDAAAENAWRLH
                     EILSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAV
                     LSGNSAVEAGTLLTADGEETGIVLDSVKDSESFTALAVIKFSAAQKELTVPNGGIFKA
                     VHPFFKTENAE"
     gene            5020..5979
                     /gene="ttcA"
                     /locus_tag="ACFOCN_001176"
     CDS             5020..5979
                     /gene="ttcA"
                     /locus_tag="ACFOCN_001176"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HFC6970330.1"
                     /translation="MSKKTKQELENNKLSKRLRHAVGDAINDFNMIEPDDKIIVCLSG
                     GKDSYALLDILRQLQASAPIDFELVAVNLDQKQPGFPEEVLPTYLESIGVPYKIVEED
                     TYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATMFLNMFY
                     GGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPIIPCNLCGSQPNLQRQ
                     VIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLERGQTLKHGGDLAFD
                     SEKMPERFSDGSEEDESEIKIAPQKAERKVINILANKPKTCGA"
     gene            complement(6073..9012)
                     /locus_tag="ACFOCN_001177"
     CDS             complement(6073..9012)
                     /locus_tag="ACFOCN_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction-modification system
                     endonuclease"
                     /protein_id="HFC6970331.1"
                     /translation="MSGFNYEKNQPHQMRAVSAVLGVFDGATPKYRTADENPELLFAA
                     KQYANNILKVQSQNGIDGRFPDRSDDQNILDISMETGTGKTYTYTQTMFELHRWLGVF
                     KFIVVVPTLSIKAGTQQFLQSKALAEHFEQDFGGDYEGVRLKTYVVESAKKNKGKKSN
                     APITIEQFVKAENKKEIHVLLINAGMVNSSSMNDTGDKALKDLFDNPVDALAAVRPFV
                     IVDEPHKFPTRESAKTWGNIKRLKPQYILRYGATFNDEYYNLLYRLTAVDAFNDGLVK
                     GVRVFQEEMQGGMDAAVKLVSSGGKEAKFELNEKDKKQTFKLAKGEDLAQIHPAISDL
                     KIDKMNKTVVVLSNGLELKTGAVINPYSYSQTVQDAMMQRAVAEHFKLERALLAERAP
                     QPKIKPLTLFFIDDIAGYRSGNELSGSLKDKFESWIRVEAARRLKTESDPFYRDYLQK
                     TLDDVSACHGGYFSKDNTDSDDRIEQEINEILHDKEKLLSLDNPRRFIFSKWTLREGW
                     DNPNVFQICKLRSSGSTTSKLQEVGRGLRLPVNELMARVRDVPYKLNYFVDSSEKDFV
                     KQLVGEINDNSFQEEISKKFTEELKQKILQKYPDIKPLVLVNQLFSDGIIDDNENFAE
                     DGYDKLKAAYPEAFPKGLDKGKVSNAKDEGKDTIIMREGKYEELKALWELIHHKAVLQ
                     YKIKDEAEFVDLFTAYLRENAAKFPQAGIRTAVNEAYINNGLMLSRRIDSFEDEDFIR
                     FNTMTYRELLEKLAQTAKIRMQTLHQAFYRVRDELNIGDFLNMQTIAQIKNGFNRFLL
                     HHSFHKFELDYRLVGSKIHPTKFTDKDGKPRAVKKADLGRFEDTEHRPAAGYLFDEIF
                     YDSDIEHENVANNQIEGVTVFTKIPRNSIKIPVAGGGTYSPDFAYIVKTKSGEILNFV
                     IEAKGTDGAEDLRKSEERKIKHAEKLFAEISKEIKVVFKTQFDGERIAELIGQNMPAG
                     GHSENGH"
     gene            complement(9025..>9816)
                     /locus_tag="ACFOCN_001178"
     CDS             complement(9025..>9816)
                     /locus_tag="ACFOCN_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HFC6970332.1"
                     /translation="TKDGIRELEELFETGKGYSPFETPKPLDLLKRLVLSATFKGNQT
                     DLILDFFAGSGTTAHAVMQLNAEGQNGNRRYICVQLPEKTAEKSEARKAGYPTIFDIT
                     KARIEKAAAKIRVEHPDYTGDSGFKIFQTADNFRQHPDKDFSPEQPDLPLNDELSEEQ
                     LQTLLTTWTLYDGAALTTPVEPVRLGAYTAYLCEKRLYLMNAGFTSADLLAFIRKLDD
                     DAAFNPNRVIVFGSNMASAMQHELDQAVRGYANKKEIELNVVIRV"
BASE COUNT         2350 a         2689 c         2357 g         2420 t
ORIGIN      
        1 tggcgcattt tttcaatatt aattatccga cttacaaagg taaaacatga ctgtccgtat
       61 cgaacacgat ttattgggcg accgcgagat tcccgccgaa gtgtattggg gcatccacac
      121 tctgcgcgcc attgaaaact ttaaaatctc cacacaaaaa atttccgacg tgccgcagtt
      181 tgtccgcagt atggtgatgg tgaaaaaagc aaccgcgcag gcaaacggcg aattgggtgc
      241 agtaaaaccc gaaatcgccg ccgccattga aaaggcttgc gacgaagttc tgctgaacaa
      301 ccgctgcctc gaccaattcc cctccgacgt gtatcagggc ggtgcgggaa cttcggtcaa
      361 tatgaacacc aacgaagtca tcgccaacct cgcattggaa gccttgggat acgaaaaagg
      421 ccgctacgac atcgtcaatc cgatggatca tgtcaatgcc agccaatcga ccaacgatgc
      481 ctatcccacg ggcttccgcc ttgccgtgta ttacagcatc ggcgaattgc tcgacaaact
      541 gaccgtcctg aaaaacgcct ttaccgccaa agccgaagaa tttaaagacg ttttgaaaat
      601 gggtcgcacc cagcttcaag atgccgtacc gatgacggca ggacaagaat tccaatcttt
      661 ccaagtgttg ttggaagaag aaatcctcaa cctcgaccgc acgcgccaac tgcttttaga
      721 agtcaatttg ggcgcaacgg caatcggcac gggcgtgaac acgcccaaag gctacgccga
      781 actggtggtc aaaaaactct ccgaagtcag cggcttgcct tgcaaactga ccgaaaacct
      841 gattgaggcg acctccgact gcggcgcata tgtgatggta cacggcgcat tgaagcgcac
      901 ggcggtcaaa ctctccaaaa tctgcaacga cttgcgcctg ctctcttccg gcccgcgtgc
      961 cggcttgaaa gaaatcaacc tgcccgaatt acaggccggt tcttccatta tgcctgccaa
     1021 agtcaatccc gtgattcccg aagtggtcaa ccaagtctgc ttcaaagtca tcggcaacga
     1081 cacgacgatt accttcgccg ccgaagccgg gcaactgcaa ttaaacgtga tggagccggt
     1141 catcgcccaa tgtatgtttg aaaccatttc cctcttgggc aatgccgcag tcaacctgtc
     1201 cgacaaatgc gtcaaaggca ttacggtcaa ccgcgaaatc tgcgaacgtt acgttttcaa
     1261 ctccatcggt ttggtgactt atctgaatcc gtatatcgga caccacaacg gcgatttggt
     1321 cggcaaaatc tgcgcccaaa ccggcaaagg cgtgcgcgag gttgtcttgg aacgcgggct
     1381 gttgagcgaa gaagaactca accgcatcct ctctcccgag aacctgatga acccccatct
     1441 gtaacgttgc agacaaatgc cgtctgaagc agggatgctg cttcagacgg cattttgtta
     1501 tatcaatcag ccggattata tgccgaacag tgccttgacc tccgcccaat aaaacaggca
     1561 ggcgatggaa cacagtgcca acacgattcc cgccgtattg attgtgttga ttttttcctt
     1621 aaaaaacagt gcgcccgaaa gcgtccccaa aacaatcacg ccgatattca taccggcaaa
     1681 aaccagcgtg ggattgtcct tcatcatttg gtgcgcggtg atgtaggtta cgatgttcat
     1741 gaagttcaaa ccgcccaaga gtatgccgcc gaccacactc tcaacgcgcc atctgaccga
     1801 tttggcaaac aggcaggcaa acatcagcac acctgccagc acaaatgcaa ccagcaggtt
     1861 gcctgaaaat gccgtgccgc ttttggcaag ctgtttgaac aggatgtcga taatgccgta
     1921 acccgcccac acgcccagca gcaatgccgc ctgccgccac gcgctgcctg attttttgcc
     1981 gccgccgtgt ttccaaagca ggcagaacag cgcggcaaat gcgaggcaca gcccgattag
     2041 tttgccttcg ctgagttttt cgccaaacag cgtcaaggcg gcaacaatcg gcaaaaacag
     2101 cgacaaacgc tgcgccgcgt cggatttgac gataccggcg gcttccacag atttgcccat
     2161 tatcacgaat acggacggca gcagcacgcc caaagcggca aacagcggcc acgtcggcaa
     2221 aaatgcgccg atattgccga tatccggctt caataccagc agggtcagta tgaccgcgac
     2281 cacataattg acggcgaccg cctgcgcgat gtcgattttt ttcttccttg ccattttcag
     2341 caaaatggaa accgacacgc tgaacacgat gctgattaac aggtaagcca tactatatcc
     2401 atttctcggg ggcaaccgcc ctgccgccgt tgaagcggat aaagccggcg atgatgcggt
     2461 agaaatacca gacgttcgtt gcaataataa tcagcacgcc gatacccaaa agggcagtca
     2521 gcgcacccaa aatataaagc caaaatgtgc gccaaaaggt tttaatcagg tattcggtat
     2581 gtgcggcata gacaatgctg tccaaactgt tccgtttcat ataggcgaga atcacgccga
     2641 ctatgggcat gaacagcatg attgcaccca aaccgaacag gatgtaggcg gcgaggacat
     2701 agttgcgccc gcttccgccg ccggacggtt cgtaagcatg gcgcgaacgt gaggcctgcc
     2761 gttcaaacgc ctgtcttaac gcctgttcgc ggcgcatctg ttcgcggtaa aactgctccc
     2821 tgcgcgcctg ttcacggcgg aatgcctctt cctgccgccc gcgttcctca tgccctctga
     2881 aagacgcgtc gtattgcgtc cgtttcgaca ggtcggaaag cgtatcgtaa gcccgttgga
     2941 tttctttgaa cttttcttcc gcctgcggat tacccggatt gcggtcggga tggtatttca
     3001 tcgccagctt gcggtaggcg cgtttgattt cgtccgcccc cgcctgcggc gacacgccca
     3061 atacggcata caaatctttg tccatattgc tccttatact tccccgtcaa accgctgcct
     3121 gtattgtttt cgggttcaaa atatttaaat ctccgggacg gatgccgata atgaacccgc
     3181 gttttccgcc gttgatatag atggtttcca aatccatcac cgactgttcg acgtaaatat
     3241 ccaattttgt ccggatgccg aacggcgttg tgccgccgac cagatagccc gtccacttgt
     3301 ttgcctgtgc gggcgtggcg ggttcgatgt gtttcgcacc caaatgccgc gccagattgc
     3361 gggttgaaat ctgtttgtcg ccgtgcatca agacaatcag ccccttaccg ttttcatctt
     3421 gcaaaacaat ggttttaata accaagtgtt cgtctttgcc gaacaggtgc gcaaattggg
     3481 ccgtaccgcc gtgttcctcg tagggataga tgaaaggttc gaacttgatg ccgttttcac
     3541 gcaaaacgcg tacggcaggt gttaccggat aggtctgttt actcattttt cgtcatgcaa
     3601 aacatggaaa tcacccaaat gcaatgttac catatatccc cctttattga aggaaaccga
     3661 tatggatatc cgatatttcg gcacaacgcc ccgctattcc gaagccgtcg gcgcaaacgg
     3721 cttgattttc ctctccggca tggttcccga aaacggtgaa acggctgccg aacagactgc
     3781 cgacgtgctt gcccaaatcg accgctggct ggcggaatgc ggctcggaca aggcacacgt
     3841 tttagatgcg gtcatctatc tgcgcgatat gggcgactac gcggaaatga acggcgtgtg
     3901 ggacgcttgg gttgccgccg gcagaacgcc tgcccgcgcc tgcgtggaag ctcggctcgc
     3961 ccgtccggag tggcgcgtcg aaatcaaaat aaccgccgtg aagaaagacg cggcaaccga
     4021 ataaacagat ttcctttata tttcagagta cgcaaatgat gaaaacctta ctgccctttt
     4081 tcggcgtggt gcgcgtcagc ggcgaagacc gccaaacctt cctgcacgga cagctttcca
     4141 acgacatcaa taatcttcag accgggcagg cgtgttatgc gacttacaac acgcccaaag
     4201 gccgcgtcat cgccaatatg attgtcgtca accgtggaga cgatttgctg ctgattatgg
     4261 cgcaagactt gcttgaagca acggtcaaac gtttgcggat gtttgtgttg cgtgccaaag
     4321 ccgtttttga aatccttgaa gattacgccg tcggcgcgga attggcagca tccgccgaac
     4381 cgcttgccgc gcaagaaccc tgccttgcct ttaccgccga atgcggttca gacggcatct
     4441 gttccgtcgt cctgccccat cggggcattt tgcacatcgc ccccgaaacc gccctgccgc
     4501 cttatgatgc cgccgccgaa aacgcgtggc ggctgcacga aatcctcagc ggttatccgt
     4561 ggatatgcgc ggctaccaaa gaaactgccg ttgcccaaat gctcaaccag cacatcatcg
     4621 gcggcgttca cttcaaaaaa ggctgctacc cgggacagga aatcattgcc cgtgcccagt
     4681 atcgggggca ggtcaaacgc ggcttggcgg tattgtcggg aaattcggcc gtcgaagcag
     4741 gaaccctgct gacggcagac ggcgaagaga ccggcatcgt gctcgacagc gttaaagatt
     4801 cggaaagctt taccgccctt gccgtgatta aattctccgc cgcacaaaaa gaactgaccg
     4861 tcccaaacgg cggtatcttc aaagcggttc atcccttctt taaaaccgaa aatgcagaat
     4921 aatccctcta atgccgtctg aacctttttc agacggcatt ttaaaatcgc ccctgttttc
     4981 ggttacaatg ccgcatccct aatttttcaa accaccgcca tgtccaaaaa aaccaaacaa
     5041 gaactcgaaa acaacaaact cagcaaacgc ctgcgccacg ccgtcggcga cgcgattaac
     5101 gatttcaata tgatcgagcc ggacgacaaa atcatagtct gcctctccgg cggcaaagac
     5161 agctatgccc tgttagacat cctgcgccag ctccaagcca gcgcgccgat tgattttgaa
     5221 ctggtcgccg tcaatctcga ccaaaagcag ccgggtttcc ccgaagaagt attgccgacc
     5281 tatctcgaaa gcataggcgt gccgtacaaa atcgtcgaag aagacaccta ctccaccgtc
     5341 aaacgcgtat tagacgaagg caaaacgact tgttcgctgt gcagccgcct gcgccgcggc
     5401 atcctctacc gcaccgcaaa agaattgggc tgcaccaaaa tcgccttagg acaccaccgt
     5461 gacgacatcc ttgccaccat gtttttaaat atgttttacg gtggaaaact caaagccatg
     5521 ccgcccaagc tggtgagcga caacggcgaa cacatcgtca tccgtccgct ggcgtatgta
     5581 aaagaaaaag acttaatcaa atacgccgaa ttaaaacaat tccccatcat cccgtgcaac
     5641 ctctgcggct cgcaacccaa cctgcaacgc caagtcatcg gcgatatgct gcgcgattgg
     5701 gacaaacgct ttcccggccg catcgaatcg atgttctccg ccctgcaaaa cgtcgtccct
     5761 tcccaccttg ccgataccga actcttcgac tttgccggat tggaacgcgg tcaaaccctg
     5821 aaacacggcg gcgatttggc gtttgacagc gaaaaaatgc ccgaacgttt ttcagacggc
     5881 agcgaagaag acgaaagcga aatcaaaatc gcgccgcaaa aagccgaacg caaagtcatc
     5941 aacattctgg cgaacaagcc gaaaacctgc ggcgcgtaac cccccgccgt caaaaatgcc
     6001 gtctgaagcc cgtttggcgt ttcagacggc attttaaaat cccgaagcag acggcttcca
     6061 aacatttgtt tctcagtgtc cgttttcaga atgcccgcct gcgggcatat tttgcccgat
     6121 cagttcggct atcctctcgc cgtcaaactg cgttttgaac accaccttga tttctttgga
     6181 aatctcggca aacagctttt cggcatgttt gattttccgc tcttcgcttt ttcgcaaatc
     6241 ttccgccccg tcagtccctt tggcttcaat cacaaagttc agaatctcgc cgcttttggt
     6301 tttcacgata taggcaaaat cgggcgaata cgtgccgccg ccggcaacgg ggattttgat
     6361 ggagtttctc ggtattttgg tgaatacggt tacgccttca atttggttgt tggcgacatt
     6421 ttcatgttct atatccgaat cgtagaaaat ttcgtcgaag agatagccgg cggcaggccg
     6481 gtgctccgta tcttcaaatc tgcccaaatc tgcttttttc accgcgcgcg gtttgccgtc
     6541 tttatcggta aatttggtcg gatggatttt gctgccgaca agccggtaat ccagttcaaa
     6601 tttatggaag gaatgatgaa gcaaaaaccg gttgaagccg tttttgattt gggcgatggt
     6661 ctgcatattc aaaaaatcgc caatgttcag ttcgtcgcgg acgcgataaa acgcctgatg
     6721 caaagtctgc atgcggattt ttgccgtttg tgccagtttt tccagaagct cacggtaagt
     6781 cattgtgtta aaacggataa aatcttcatc ttcaaaactg tctatgcggc gggaaagcat
     6841 aagcccgttg ttgatataag cttcgtttac cgccgtgcgt atgcctgcct gcgggaattt
     6901 ggcggcgttt tcacgcaaat aggcggtaaa taaatcgaca aattcggctt catccttgat
     6961 tttgtactgc aaaacggctt tatggtgaat cagctcccac aaggctttga gttcttcata
     7021 tttgccttcg cgcatgatga tggtgtcttt gccctcgtct ttggcgttgc tgactttgcc
     7081 tttgtccaaa cctttgggga aggcttcggg ataggcggct tttaatttgt catagccgtc
     7141 ttcggcaaag ttttcattgt cgtcaatgat gccgtctgaa aacagttggt ttaccaatac
     7201 cagcggtttg atatcggggt atttttgcaa tattttttgt ttcagctctt cggtaaactt
     7261 tttggagatt tcttcctgaa aagaattgtc gttgatttcg ccgacaagct gcttcacaaa
     7321 gtctttttcg ctgctatcga caaaataatt cagtttgtac ggtacatcgc gcacccgcgc
     7381 catcagctcg tttaccggca ggcgcaggcc gcgtccgact tcttgcagct tggaagtcgt
     7441 gctgccgctg gaacgcagtt tgcaaatctg gaaaacgttg ggattgtccc agccttcgcg
     7501 cagcgtccat ttggaaaaaa taaagcggcg cgggttgtcc aaagacagca gtttttcctt
     7561 atcgtgcagg atttcattga tttcctgctc gattctatcg tcgctgtctg tattgtcttt
     7621 ggaaaaatag ccgccgtggc aggcggatac atcgtccaac gtcttttgca ggtaatcgcg
     7681 gtaaaacggg tcgctttccg ttttcagacg gcgtgccgct tccacgcgaa tccagctttc
     7741 aaatttatct ttcaggctgc ctgaaagctc gttgccgctg cggtagcccg cgatatcgtc
     7801 aataaaaaac agcgtcagcg gcttgatttt gggctgtggc gcgcgttctg ccaaaagcgc
     7861 gcgttccagc ttgaaatgtt cggcaaccgc ccgctgcatc atcgcatcct gcaccgtttg
     7921 cgaataggaa taagggttga tgacggcacc cgttttcaac tccaagccgt tgcttaacac
     7981 caccacggtt ttattcattt tgtcgatttt caaatccgaa atagccggat ggatttgcgc
     8041 caaatcttcg ccttttgcca gtttgaacgt ctgctttttg tccttttcgt ttaattcaaa
     8101 tttcgcttct ttgccgcccg acgacaccag ttttaccgcc gcatccatgc cgccctgcat
     8161 ttcttcctga aacacgcgca cgcctttgac cagcccgtcg ttaaacgcgt ctactgccgt
     8221 caaacggtaa agcaagttgt aatattcatc gttaaatgtc gcaccgtagc gcaaaatata
     8281 ttgcggtttt aagcgtttga tattgcccca cgttttcgcg ctctcccggg tcgggaattt
     8341 atgcggttcg tccacaatca caaacgggcg cacggcggcc aatgcatcaa cgggattgtc
     8401 aaacaaatct ttcaatgcct tgtcgcccgt atcgttcatg gacgacgaat taaccatgcc
     8461 cgcgttaatc agcagcacat ggatttcctt tttgttttcc gctttgacaa attgctcaat
     8521 cgttatgggc gcattggact ttttgccctt attctttttc gcgctttcca ccacataggt
     8581 tttcaggcgc acgccttcat aatcgccgcc gaaatcctgt tcaaaatgct ctgccaaagc
     8641 cttgctttgc aaaaactgct gtgttcccgc cttaatggac aaagtcggca cgaccacgat
     8701 aaatttgaac acgcccagcc aacggtgcag ctcgaacatg gtttgtgtgt aggtataggt
     8761 tttgcccgtg cccgtttcca tggaaatatc aaggatattt tggtcgtccg aacggtcggg
     8821 gaatcggccg tctataccgt tttggctttg cactttcagg atattgtttg cgtattgttt
     8881 tgcagcaaac aaaagttcgg gattttcgtc tgccgtccga tatttgggcg ttgccccgtc
     8941 aaacacgccc aaaaccgccg aaaccgcccg catttggtgc ggctggtttt tctcgtaatt
     9001 aaaaccgctc atgaattgcc tccgtcaaac cctgataacc acattcaact caatctcttt
     9061 tttattggca taaccgcgaa ccgcctggtc aagttcgtgc tgcatggcgc ttgccatatt
     9121 gctgccgaat acaatcacgc ggttgggatt gaaagccgca tcgtcgtcca gcttgcggat
     9181 aaacgccaac aaatcggcag aagtaaaacc ggcattcatc agatacagcc gtttttcgca
     9241 cagatacgcc gtgtaagccc ctaaccgcac aggctcaacc ggcgtggtca gtgccgcccc
     9301 gtcatacagc gtccaggtgg tcagaagcgt ttgcagctgt tcttcgctta attcatcgtt
     9361 aagcggcaaa tccggttgtt cgggcgaaaa atccttgtcc ggatgctgcc tgaaattgtc
     9421 tgccgtttga aagattttga agcccgaatc gcccgtgtaa tcgggatgtt cgacgcggat
     9481 tttggcggcg gctttttcta tgcgggcttt ggtgatgtcg aagatggtcg ggtagcctgc
     9541 tttacgggct tcggattttt cagcggtttt ttcgggaagc tgtacacaga tatagcggcg
     9601 gttaccgttt tgtccttcgg cgttaagctg catcacggcg tgggcggttg tgccgctgcc
     9661 tgcgaagaag tctaggatta ggtcagtttg atttcccttg aaagttgcag aaagaactaa
     9721 tcttttcaat aaatctaatg gttttggtgt ttcaaaagga gaataacctt ttccagtttc
     9781 aaacaactct tctaattcac gaataccatc tttagt
//
LOCUS       DAXIFD010000071         9814 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.071, whole genome shotgun sequence.
ACCESSION   DAXIFD010000071 DAXIFD010000000
VERSION     DAXIFD010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9814
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.071"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(58..1851)
                     /locus_tag="ACFOCN_001179"
     CDS             complement(58..1851)
                     /locus_tag="ACFOCN_001179"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HFC6970333.1"
                     /translation="MQLDIDRLVAYFGGVNALAEALKQHDPENAATTAAIYKWRTRGS
                     LPLAQLQKLTALAESQGRPLDLNAFLQKNESLERTEMTQTNRVIIFDTTLRDGEQSPG
                     AAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITKSTVCSLSRAIE
                     RDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV
                     EFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIVKTPNG
                     GKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRH
                     DLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDGVLKHRET
                     YEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKELADKK
                     REIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRASATG
                     SGPVDAIFKAIESVAQSGATLQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGADTD
                     VLVATAKAYLSALSKLEFSAAKPKAQGSGTI"
     gene            2096..3205
                     /gene="proB"
                     /locus_tag="ACFOCN_001180"
     CDS             2096..3205
                     /gene="proB"
                     /locus_tag="ACFOCN_001180"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HFC6970334.1"
                     /translation="MKYKRIVFKVGTSSITHSDGSLSRGKIQTITCQLAALHHAGHEL
                     VLVSSGAVAAGFGALGFKKRPVKIADKQASAAVGQGLLMEEYTANLSSDGIVSAQILL
                     SRADFADKRRYQNAGGALSVLLQRRAVPIINENDTVSAEELKIGDNDTLSAQVAAMIQ
                     ADLLVLLTDIDGLYTGNPNSNPDAVRLDKIEHINHEIIEMAGGSGSANGTGGMLTKIK
                     AATIATESGVPVYICSSLKPDALAEAAEHQADGSFFVPRAKGLRTQKQWLAFYSESRG
                     SVYVDEGAEHALSEQGKSLLMSGIAGIEGHFSRMDTVTVYSNATKQPLGKGRVLFGSA
                     AAEDLLKSRKAKGVFIHRDDWISITPEIRLLLTEF"
     gene            3218..4480
                     /locus_tag="ACFOCN_001181"
     CDS             3218..4480
                     /locus_tag="ACFOCN_001181"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HFC6970335.1"
                     /translation="MSNTQKQLALAKAAKKSVNTADTEEKNRALLAMADSLEAAAADI
                     LAANRLDLEAAAGNIPESMTDRLLLDEKRIGAMADGIRAVAALPDPVGEILETSTLPN
                     GLEIVKKRVAMGVIGIIYESRPNVTSDAAALALKSGSAVVLRSGKDAFQSARAIVAAL
                     KTGLAQTRIDPDALQLIEDTGRESSYEMMRAKDYLDLLIPRGGAGLIRAVVENAVVPV
                     IETGTGIVHIYIDKDADWDKALRIVYNAKTSRPSVCNSMEVLLVHEDIAADFLPKLER
                     LLVRNRIEAGLPPVRFRLDPQAARHIGGEAAGADDFDTEFLDYILAVKTVASVEEAVW
                     HIETHSTHHSDGIVTENRHAADYFTTHIDSAAVYVNASTRFTDGGEFGLGCEMGISTQ
                     KLHARGPMGLKELTSYKYIVQGTGQVRE"
     gene            complement(4705..7737)
                     /locus_tag="ACFOCN_001182"
     CDS             complement(4705..7737)
                     /locus_tag="ACFOCN_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6970336.1"
                     /translation="MFWIVLIVILLLALAGLFFVRAQSEREWMREVSAWQEKKGEKQA
                     ELPEIKDGMPDFPELALMLFHAVKTAVYWLFVGVVRFCRNYLAHESEPDRPVPPASAN
                     RADVPNASDGYSDSGNGTEEAETEAAEAAEEEAADTEDIATAVIDNRRIPFDRSIAEG
                     LMPSESEISPVRPVFKEITLEEATRALNGAALRETKKRYIDAFEKNETAVPKVRVSDT
                     PMEGLQIIGLDDPVLQRTYSRMFDADKEAFSESADYGFEPYFEKQHPSAFSAVKAENA
                     RNAPFRRHAGQAEAKSPDVSQGQSVSDGTAVRDARRRVSVNLKEPNKATVSAEARISR
                     LIPESRTVVGKRDVEMPSETENVFTETVSSVGYGGPVYDETADIHIEEPAAPDAWVVE
                     PPEVPKVPMPAIDIPPPPPVSEIYNRTYEPPSGFEQAQRSRIAETDHLADDVLNGGWQ
                     EETAAIADDGSEGAAERSSGQYLSETEAFGHDSRAVCPFEDVPSERPSCRVSDTEADE
                     GAFQSEETDAVYEHLPTTDLLLPPLFNPGATQTEEELLENSITIEEKLAEFKVKVKVV
                     DSYSGPVITRYEIEPDVGVRGNSVLNLEKDLARSLGVASIRVVETIPGKTCMGLELPN
                     PKRQMIRLSEIFNSPEFAESKSKLTLALGQDITGQPVVTDLGKAPHLLVAGTTGSGKS
                     VGVNAMILSMLFKAAPEDVRMIMIDPKMLELSIYEGIPHLLAPVVTDMKLAANALNWC
                     VNEMEKRYRLMSFMGVRNLAGFNQKIAEAAARGEKIGNPFSLTPDDPEPLEKLPFIVV
                     VVDEFADLMMTAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRI
                     AFQVSSKIDSRTILDQMGAENLLGQGDMLFLPPGTAYPQRVHGAFASDEEVHRVVEYL
                     KQFGEPDYVDDILSGGGSEELPGIGRSGDDETDPMYDEAVSVVLKTRKASISGVQRAL
                     RIGYNRAARLIDQMEAEGIVSAPEHNGNRTILVPLDNA"
     gene            7902..8582
                     /locus_tag="ACFOCN_001183"
     CDS             7902..8582
                     /locus_tag="ACFOCN_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000041 - transition metal ion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HFC6970337.1"
                     /translation="MIFQTVWFSDVVLSVSWIVLILILAASAPSAFRSLARYRSALPL
                     CTVIFSAAWCLNASAGGGQLAQMNYHLLAVNLVALMVGTSAAFWLAALLMLPYCLLFA
                     GSAGAYPPNALVLILPALAVNRLSRMLVNRLPPNIFIFIFVNGFLASAAGILLTGLVL
                     TGILDAANAFPSEILWTTALPVFILLACAEAFLSGISTAIFVALKPHWINTFDDNRYL
                     KSDRGIWR"
     gene            8611..8970
                     /locus_tag="ACFOCN_001184"
     CDS             8611..8970
                     /locus_tag="ACFOCN_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HFC6970338.1"
                     /translation="MLSNIIPLSIGAALGATARWLLNLAVPAAMSPATGNLFANWTGA
                     LLIGIFAETINHPQWKLLLITGFLGSLTTLSGFSLETVTLLQSNRPASALANIFLHTA
                     GSLLLTWLGLKIGAAVK"
     gene            complement(9103..9531)
                     /locus_tag="ACFOCN_001185"
     CDS             complement(9103..9531)
                     /locus_tag="ACFOCN_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970339.1"
                     /translation="MISIFKAYYDVYEFNGELLKRCIFLDEENEENNEIIKDRIYGYL
                     IYVLTGDLYLQKDIDENLEFIHQAENNPNEVYSGGGQGFCWDISAEKVVFYNNEFDEE
                     DGWPDLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
BASE COUNT         2213 a         2709 c         2508 g         2384 t
ORIGIN      
        1 gccgcaatgc cgtctgaagc ctttttatgc ttcagacggc atcgtctgtt ttcacgctca
       61 aatcgtaccg ctgccttgcg ctttcggttt ggcggcacta aattccagtt tgctcaaagc
      121 ggaaaggtag gctttggcag tggcaaccaa aacgtcggta tccgcgccct gaccgttgac
      181 gacgcggttg ccgcgtgcca gacggacgct ggtttcgcct tggctttccg taccttgcgt
      241 gacggcgttg acggaataaa tctgcaaagt cgcgccgctt tgcgccacgc tttcaatcgc
      301 tttgaaaatt gcatcaaccg gaccggaacc ggttgcggaa gcgcgttttt cttcgccttt
      361 gatgctgaac acgatgtcgg cgcgcggctc ttcgccggtt tcggtgctga ttttttggga
      421 gatgaatttg tagctctcgg cattcatgct gcccatttcg tcggatacca gtgcgtgcag
      481 gtcttcatcg aagatttcgc gttttttgtc ggcgagttct ttgaagcggg caaacgcggc
      541 gttcagtgcc tcttcgcttt ccaactcgat gcccaaatcc gccagcttgg ttttgaaggc
      601 gttgcggccg gacaatttgc ccaagctcaa acggtttgtt gcccagccga ccgattcggc
      661 ggacataatc tcgtaagttt cgcggtgttt cagcaccccg tcctgatgga tgcccgattc
      721 atgcgaaaag gcattggcac cgacaatggc tttgttgggc tgcacgggat agcccgtaat
      781 ggtggacacc agtttggacg aaggcacgat ttgcgtggta tcgatgccgg tttccaagcc
      841 gaacaagtcg tggcgcactt tcaacgccat cacgatttct tcaaccgaag cattgcctgc
      901 acgttcgccc aagccgttga cagtacattc cacctgacgc gcaccgcctt ttaatgcggc
      961 aagcgaattg gcaaccgcca agcccaaatc gttgtggcag tgtgccgacc aaacgacttt
     1021 gccgccgttg ggcgttttga caatcagttc gcggaaaaat tcttcggttt tgtacgggat
     1081 ggaatagccg acggtatcgg gaatattgat ggtggtcgcg cccgcttcaa ttaccgcgcc
     1141 gcagatttcg gcaaggaaat cgatttccga acgcaacgcg tcttcgcagg aaaattccac
     1201 atcgtcggtg tattcacgag cgattttcac cgctttgacc gccgcctcaa tcacctgctt
     1261 cggcttcatc ttcaatttgt actccatatg gatggggctg gtggcgatga aggtgtggat
     1321 gcgttttttc ggcgcgggcg caacggcctc acccgcctga cggatgtccc gctcgatggc
     1381 gcgggacaat gaacagaccg ttgatttggt aatggttttc gcaatcgcat tgaccgcctc
     1441 gaaatcgccc gggctggcag cggcaaaacc cgcttcgatg atgtccacac ccaatttttc
     1501 cagctggcgg gcgacgcgga ttttttcctc tttggtcata gcggcgccgg gcgactgctc
     1561 gccgtcgcgc agggtggtat caaaaataat tacgcggttg gtctgtgtca tttctgttct
     1621 ctccagagat tcgttttttt gtaaaaaagc attcaaatcc agcggtctgc cttgcgattc
     1681 ggcaagcgcg gtcagctttt gcagttgcgc cagaggcagc gagccgcgcg tgcgccattt
     1741 atagatggcg gcggtcgtcg cggcattttc gggatcgtgc tgtttcaacg cttcggcaag
     1801 cgcgttcacg ccgccgaaat aagcaaccaa gcggtctata tctaattgca tggtagtcct
     1861 tgtctaaaat aaatcagcct acagcagaaa tatggacagg attatacgca ttttggacaa
     1921 aacggcaata taaatttgaa aaatctcaat aagccgccat agattttatt aattttatac
     1981 attttgtcca ttttattgca gacgcggcgt gattgttgac aattgcggca gaacagggca
     2041 aattcggcgg cacaaggtgg caacgagaca ggacaaacca acaaggatgg aaacaatgaa
     2101 atacaaaaga atcgtattta aagtcggcac atcttcgatt acccattcgg acggcagtct
     2161 ctcgcgcggc aaaatccaaa ccatcacctg ccagcttgcc gcattgcatc atgcgggaca
     2221 cgagctggtc ttggtgtctt ccggcgcggt tgcggcaggg ttcggtgcgc tgggtttcaa
     2281 aaaacgtccg gtcaaaatcg ccgacaaaca ggcttccgcc gccgtcgggc aggggctgct
     2341 gatggaagaa tatacggcaa acctgtcttc agacggcatc gtgtccgcac aaatcctgct
     2401 cagccgcgcc gactttgccg acaaacgccg ctaccaaaat gccggcggcg cactttccgt
     2461 gctgctgcaa cgccgcgccg tccccatcat caatgaaaac gatacggttt cggctgagga
     2521 attgaaaatc ggcgacaacg acacattgag tgcgcaagtg gcggcgatga tacaggcaga
     2581 cctcttggtg ctgctgaccg acatagacgg tctttacacg ggcaacccga acagcaatcc
     2641 cgatgccgta cggctggaca aaatcgaaca catcaaccat gaaatcatcg aaatggcggg
     2701 cggctcgggt tcggcaaacg gcacaggcgg tatgctgacc aaaatcaaag cggcgacgat
     2761 tgcgaccgag tccggcgtac cggtgtatat ctgttcctcg ctcaaacccg atgcacttgc
     2821 cgaagctgcc gaacatcagg cggacggctc gtttttcgtc ccccgtgcca aaggtttgcg
     2881 gacgcagaag caatggctgg cgttctattc cgaaagccgg ggcagcgttt atgtggacga
     2941 aggtgcggaa cacgctttgt ccgaacaggg gaaaagcctg ctgatgtcgg gcattgccgg
     3001 aatcgaaggg catttttccc gtatggacac tgtaaccgtg tacagcaacg caaccaaaca
     3061 gcctttgggc aaagggcgcg tcctgttcgg ttctgccgcc gccgaagacc tgctcaaatc
     3121 gcgtaaggcg aaaggcgtgt tcatccatcg ggacgactgg atttccatca cgcccgaaat
     3181 acgcctgctt ctgaccgaat tttagaaaag gaaacccatg tcaaacacac aaaaacagct
     3241 tgcccttgcc aaagcggcaa aaaaatccgt caacacggcg gatacggaag aaaaaaaccg
     3301 cgcgctgctt gctatggcgg acagcttgga agcggcggcg gcagatattt tggcggcaaa
     3361 ccgtttggat ttggaagcgg cggcaggcaa cattcccgaa agcatgaccg accgcctttt
     3421 gttggacgaa aaacgcattg gcgcgatggc ggacggcatc agggcggttg ccgcgctgcc
     3481 cgaccccgtg ggcgaaatac tggaaacctc gactctgccc aacggcttgg aaatcgtcaa
     3541 aaagcgtgtg gcgatgggcg ttatcggcat tatttacgaa agccgcccga acgttacgtc
     3601 cgatgcggcg gctttggcac tgaaaagcgg cagcgcggtc gtactccgca gcggcaaaga
     3661 tgcattccaa tccgcacgcg ccatcgttgc cgccctgaaa acggggttgg cacaaacccg
     3721 catcgacccc gacgcgctcc agttgattga agacaccggg cgcgaaagca gttacgaaat
     3781 gatgagggcg aaagattatc tagacctgct gattccgcgc ggcggggcgg ggctgatacg
     3841 ggcggtggtt gaaaatgccg tcgtgccggt cattgaaacg ggaacgggca tcgtccacat
     3901 ttatatcgac aaggacgcgg attgggacaa ggcgctccgt atcgtgtaca acgccaaaac
     3961 cagccgcccg tccgtgtgca actcgatgga agtgctgctg gtgcatgaag acattgctgc
     4021 cgacttcctg cccaagctcg aacggctgtt ggttcgcaac cgtatagaag ccggactgcc
     4081 gcccgtccgc ttccgtttgg atccgcaggc ggcgcggcat atcggcggcg aagcggcggg
     4141 tgcagacgat ttcgataccg agtttttaga ctacatcctc gctgtgaaaa ccgtcgcttc
     4201 ggtcgaagag gcggtctggc acatcgaaac ccacagcaca caccattcag acggcatcgt
     4261 taccgaaaac cgccacgctg cggactattt cacgacccat atcgattctg ccgccgtgta
     4321 tgtcaacgcg tccacgcgct ttaccgacgg cggcgaattc ggcttgggtt gcgaaatggg
     4381 catctccacg caaaaactcc acgcccgggg tccgatgggt ttgaaagagc tgacgagtta
     4441 caaatacatc gtacaaggca cgggacaggt cagggaataa tccgaattca aatgtctgat
     4501 atagtggatt aactttaaac cggtacggcg ttgcctcgcc ttagctcaaa gagaacgatt
     4561 ctctaaggtg ctgaggcacc aagtgaatcg gttccgtact atttgtactg tctgcggctt
     4621 cgtcgccttg tcctgatttt tgttaatcca ctataaaaat gccgtctgaa acagtcttca
     4681 gacggcattt ccatttgcaa aaaatcaagc attgtccaag gggacgagaa tcgtacggtt
     4741 gccgttgtgt tccggtgcgg acacaatgcc ttccgcctcc atctggtcaa tcagacgcgc
     4801 ggcgcggttg tagccgatac gcaaggcgcg ctgtacgccc gaaatgctgg ctttgcgcgt
     4861 tttcaggaca acggatacgg cctcgtcgta catcggatcg gtttcgtcgt cgccgctgcg
     4921 cccgatgccg ggcagctctt cgctgccgcc gccgctcaaa atatcgtcaa catagtccgg
     4981 ttcgccaaac tgtttcaaat attcgaccac gcggtgcacc tcttcatccg aggcaaatgc
     5041 gccgtgaacg cgctgcggat aggcagtacc cggcggcagg aacagcatat cgccctgacc
     5101 gagcaggttt tccgcgccca tttggtcgag aatcgtgcgg ctgtcgattt tgctggacac
     5161 ttggaacgcg atacgcgtcg ggatgttcgc cttaatcaga cccgtgatga catcgacgct
     5221 ggggcgttgt gtggcaagaa tcaaatggat gcctgccgcg cgggcttttt gggcgaggcg
     5281 ggcaatcagt tcctcgattt tcttgcctgc cgtcatcatc aaatcggcaa actcatcgac
     5341 cacgaccacg ataaacggca gtttttccaa aggttcggga tcgtcgggcg tgaggctgaa
     5401 cgggttgccg attttctccc cccttgctgc ggcttcggcg attttttgat tgaaacccgc
     5461 aagattgcgc acgcccataa agctcatcag gcggtagcgt ttttccattt cgttaacaca
     5521 ccagttcagc gcgtttgccg ccagcttcat atcggtaacg acaggggcga gcaggtgcgg
     5581 gatgccttcg taaatgctca attccagcat tttcggatcg atcataatca tacgcacgtc
     5641 ttccggcgcg gctttgaaaa gcatagacag aatcatcgcg ttgacaccca ccgatttgcc
     5701 cgaaccggtc gtgccggcaa ccaacaaatg cggcgctttt cccaagtcgg ttacgacggg
     5761 ctgtccggtg atgtcctgac cgagcgcgag cgtcagcttg gatttggatt cggcaaactc
     5821 gggtgaattg aagatttcgc tcaggcgtat catttggcgt ttcgggttcg gaagttccaa
     5881 acccatacag gttttgccgg ggatggtttc gacaacgcgg atggaagcca cgccgagcga
     5941 acgcgccaag tctttttcca gattcagaac ggaattgccg cgcacgccga catcgggttc
     6001 gatttcataa cgcgtaatca cggggccgga ataagaatcg acaaccttga ccttgacttt
     6061 gaactccgcc aatttttctt cgatggtgat gctgttttcc aacagttctt cttcggtttg
     6121 cgtcgccccg ggattgaaca gcggcggcag aagcaggtcg gttgtcggca ggtgttcgta
     6181 taccgcatcg gtttcttccg attggaacgc cccttcatcc gcttccgtat ccgatacccg
     6241 gcaggacggg cgttcagacg gcacatcttc aaacggacaa accgcccgac tgtcatgccc
     6301 gaacgcttcg gtttccgaca gatattgccc gcttgaccgc tctgccgcac cctcactgcc
     6361 gtcatccgca atagcggcgg tttcctcctg ccaacctcca ttcaaaacat catcggcaag
     6421 atggtcggtt tcggcaatgc ggctgcgttg cgcctgctcg aatcctgacg gcggttcata
     6481 ggtacggttg tagatttccg atacgggagg cggcggcgga atatcgattg cgggcatggg
     6541 aactttcggc acttcgggtg gttcgaccac ccaagcatcg ggcgcggcag gttcttcaat
     6601 atggatatcg gcagtttcat cataaaccgg accgccgtat cccacagacg aaacggtttc
     6661 cgtgaaaaca ttttcggttt cagacggcat ttcgacatcc cgtttcccga caaccgtccg
     6721 actttccgga atcaggcgcg aaatccgcgc ctccgcagaa accgttgcct tgttcggttc
     6781 tttcaaattg acggaaacgc ggcggcgggc atcgcggacg gctgtgccgt ctgaaacgga
     6841 ctgtccttgg gaaacatccg gggattttgc ctccgcctgc cctgcatgac ggcggaacgg
     6901 cgcattccgt gcattttcgg ctttgactgc agaaaaggca gacggatgct gcttctcaaa
     6961 atacggctca aatccgtaat ccgcagactc ggaaaacgct tctttgtccg catcgaacat
     7021 acgggaatac gtgcgttgaa gcacagggtc gtccaaaccg ataatctgca gcccttccat
     7081 cggggtatcg gacacgcgga ctttggggac cgctgtttcg tttttctcaa atgcatcgat
     7141 atagcgtttt ttcgtttccc ttaaagccgc gccgtttaag gcacgcgttg cttcttccaa
     7201 agtgatttcc ttaaaaaccg gacggacggg cgaaatttcg ctttcagacg gcatcaaccc
     7261 ttcagcaata ctccggtcga atgggatgcg gcggttgtcg attacggcag ttgcaatgtc
     7321 ttccgtatcg gcagcctctt cctccgcagc ttctgctgct tccgtttccg cttcttccgt
     7381 cccgtttcca ctgtctgaat atccgtcgga tgcgttcgga acatccgcac ggtttgcaga
     7441 agcaggcgga acaggcctat ccggttcgga ttcgtgcgcc agatagtttc ggcagaaacg
     7501 gacgacaccg acgaacagcc aatacactgc cgttttgacg gcatggaaaa gcatcagggc
     7561 aagttcggga aaatcgggca taccgtcttt gatttcaggc agctccgcct gtttttcccc
     7621 tttcttttcc tgccacgcag aaacctcgcg catccactcg cgttcggatt gtgcgcggac
     7681 aaaaaacagg ccggcaagcg caagcaacaa aataacgatc aaaactatcc aaaacatatg
     7741 ccgtttcccg caagacaaac gattaaacgg gtttatttta acgtgtttcc atcccaaaaa
     7801 aaacaaccag ccggcaattc tgccgaaacc gattcggctt tcggtttgcc cccgccgaca
     7861 gtataatagc cgtcccttcc cttaatcttt gcggcattgc catgattttc caaacagtct
     7921 ggttttcaga tgtggtactg tcggtttcgt ggattgtcct tatcctgata ctggcagctt
     7981 ccgcgccgtc cgcattccgc tcgcttgccc gctaccgttc cgcccttcca ctgtgtaccg
     8041 taattttttc cgcagcatgg tgtctgaacg cctctgccgg cggcggacag cttgcccaga
     8101 tgaactacca tctgctcgcc gtcaatctgg ttgcactgat ggtgggcact tccgccgcct
     8161 tttggcttgc cgcgctgctg atgctgccct actgcctgct gtttgccggt tctgccggcg
     8221 catatccgcc gaacgctttg gtgctgattc tgcccgcgct tgccgtcaac cgcctgtcgc
     8281 gtatgctggt caaccgcctg ccgcccaata ttttcatctt tattttcgtc aacggctttc
     8341 tcgcttccgc cgccggcatt ctgttgaccg ggctggtgct gaccggtatt ttggatgctg
     8401 caaacgcttt tccgtccgaa atattgtgga cgaccgccct gcccgtcttt attctgctgg
     8461 cgtgtgcgga agcttttctc agcggcattt caactgccat atttgttgca ctgaagcccc
     8521 attggatcaa cactttcgac gacaaccgct atctgaagtc cgaccgcggc atatggcggt
     8581 agccttcaga cggcatagac aggcaaaacc atgctttcca acatcatccc cctttccatc
     8641 ggtgcggcac tcggtgcaac ggcgcgttgg ctgctcaacc tcgccgttcc tgccgccatg
     8701 tctcccgcca cgggcaacct gtttgccaac tggacgggcg cgctgctcat cggcatcttt
     8761 gccgaaacca tcaatcaccc gcaatggaag ctgctgctga ttaccggttt tctcggcagc
     8821 ctgaccacgc tttccggatt ttcactggaa accgtaaccc tgctccaatc gaatcgtcct
     8881 gcttcagcac ttgccaatat tttcctacac acggcaggtt cgctgctgct gacttggctc
     8941 gggctgaaga taggggcggc agtcaaataa ccgcaacaaa ttgcttcctt tggttttgac
     9001 acaaactata caagtcctaa catcttaatc atggcgcagc atataagcgt ggatttgcag
     9061 cccaatctat actttctgat tctattcatt aagccattat gcttattcct caatcacggt
     9121 ttccaccacc gaatgaatac ttttaggcaa ttgcaaaaaa gcattccaag caattaaagc
     9181 agttttaaaa gtatgcagcg aacagcttaa atcaggccag ccgtcttctt catcaaattc
     9241 gttgttatag aaaactactt tttcagcaga aatatcccag caaaaacctt gtccacctcc
     9301 tgaataaact tcattgggat tattttctgc ttgatggata aattctaaat tttcatctat
     9361 gtctttttgt agataaaggt ctcctgttaa aacataaatt aagtatccat atattctatc
     9421 tttaattatt tcattatttt cttcattttc ttcatctaaa aatatacatc tttttaatag
     9481 ttccccatta aattcataaa catcgtaata agctttaaaa atagatatca tatcatttcc
     9541 ttatcttcca taaatcggct tcggttgttt aaataccgcc cgtgccaatt accgttctca
     9601 aattcaaatt gggcttttag gtctataaca aagaaaaagc cttggtagga taaacctacc
     9661 aaggcttttt cttaaaaaaa cgctctatta ccgtgcctaa aaatgcaaaa aagtaaccgt
     9721 cataaccctt ttgccaaaat caatatcatc atccgatgaa tgaattgacg gtatataaga
     9781 aagaattaat aagctcataa accggtaaga aaaa
//
LOCUS       DAXIFD010000072         9801 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.072, whole genome shotgun sequence.
ACCESSION   DAXIFD010000072 DAXIFD010000000
VERSION     DAXIFD010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9801
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.072"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(13..1308)
                     /locus_tag="ACFOCN_001186"
     CDS             complement(13..1308)
                     /locus_tag="ACFOCN_001186"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HFC6970340.1"
                     /translation="MIRPDFQEYLPSYYFSSVNPHTVYPKLQCRLKTDTCIIGGGLSG
                     LCTALPLAEQGHETVVLEAARIGFGASGRSGGQVISDYACGMEEIEKQVGLEQAQWFW
                     QQSLQAVELVDERVRKHAIDCDWQRGYATVAIRSQHWEELQQWHEHAQKYYGATHYQL
                     WDNTELKQQLDSDMYQGAQFDPLSGHLHPLNYTLGIARAAAEAGTKIFEHSPMIRIEP
                     YQNGWLVYTPEGSVECKNLVYAVNTYAGLNPIFQPLERKAIAVSTFIIATEPLGARAK
                     GLIRNNMAVCDNRHILDYYRLSADGRLLFGGKDNEFIDNPARMTELVRQDMLKVFPQL
                     DDVKIEYSWGGECDITANLVPHFGRLAANVFYAQGYSGHGMAITGIAGLAVAEAILGD
                     ECRLKPFERLRQPNIILQPFLRKLGSFLGSKYYQWKDSR"
     gene            complement(1434..2321)
                     /locus_tag="ACFOCN_001187"
     CDS             complement(1434..2321)
                     /locus_tag="ACFOCN_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6970341.1"
                     /translation="MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGG
                     FSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVLGTLAGYAMARIKRFRGSTLFAG
                     MISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
                     TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLV
                     ITSFLSGPGSSTLPQVIFSKIKLGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKR
                     DREAAEAYRQEKLAAEKAN"
     gene            complement(2321..3286)
                     /locus_tag="ACFOCN_001188"
     CDS             complement(2321..3286)
                     /locus_tag="ACFOCN_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6970342.1"
                     /translation="MNLNKLKNKLFRRPGQRVVIAVPYIWLLVLFLIPFAIVLKISFA
                     EQEIAIPPFTPLTSIDEDLGRLNITISYQNYADIFQNFWHTLNPFGDSENSNIYLMTY
                     WSSIKTALMTTVICLLVGYPTAYAISRANPSVRNGLLLAIMLPFWTSFLLRVYAWMGL
                     LGHNGIVNNLLIKMGIISEPLDLFYNAFSLNLVMVYAYLPFMILPLYTQLVKLDNRLL
                     EAASDLGAGPVKSFLTITLPLSKTGIIAGSMLVFVPAVGEFVIPELVGGSENLMIGKV
                     LWQAFFDQNNWPLASAVAVVMVALLVVPIALFQHYENRELEEGAK"
     gene            complement(3302..4426)
                     /gene="potA"
                     /locus_tag="ACFOCN_001189"
     CDS             complement(3302..4426)
                     /gene="potA"
                     /locus_tag="ACFOCN_001189"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HFC6970343.1"
                     /translation="MTATTASSAKPYLQIQGLVKKFGDNYAVDNIDLDIYQHEIFALL
                     GSSGSGKSTLLRMLAGMESPNQGKIILDGQDITKLAPYDRPINMMFQSYALFPHMTVE
                     QNIAFGLKQDKMPKGEIAARVEEMLRLVQMTKFAKRKPHQLSGGQQQRIALARSLAKR
                     PKILLLDEPLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSD
                     GQLQQVGTPSDVYDYPNSRFTAEFIGETNIFDGVVIEDHADYAVIECEGLENHVRIDH
                     GLGGPSEQDLWVSIRPEDIDLYKEKPEYLGDYNWAKGTVKEIAYLGSFAIYHIKLANG
                     RVVKSQVPAPYWYVRNITPPTWDETVYISWPENQPTPLFR"
     gene            complement(4622..4729)
                     /locus_tag="ACFOCN_001190"
                     /pseudo
     CDS             complement(4622..4729)
                     /locus_tag="ACFOCN_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(4808..5077)
                     /gene="rpsO"
                     /locus_tag="ACFOCN_001191"
     CDS             complement(4808..5077)
                     /gene="rpsO"
                     /locus_tag="ACFOCN_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HFC6970344.1"
                     /translation="MALTVEQKAQIVKDFQRKEGDTGSSEVQVALLTFRINDLTPHFK
                     ANPKDHHSRRGLLKMVSQRRRLLAYLRRTQPDTYRALITRLGLRK"
     gene            complement(5300..6235)
                     /gene="secF"
                     /locus_tag="ACFOCN_001192"
     CDS             complement(5300..6235)
                     /gene="secF"
                     /locus_tag="ACFOCN_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HFC6970345.1"
                     /translation="MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVE
                     FTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQL
                     SNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
                     AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRK
                     PAMRGHAVPEVIDNAITATMSRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVF
                     GIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV"
     gene            complement(6239..8092)
                     /gene="secD"
                     /locus_tag="ACFOCN_001193"
     CDS             complement(6239..8092)
                     /gene="secD"
                     /locus_tag="ACFOCN_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HFC6970346.1"
                     /translation="MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAII
                     INEQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITA
                     LNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
                     EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVN
                     KVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTAT
                     LELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSF
                     DQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGR
                     VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI
                     VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNV
                     LINERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAV
                     VHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE"
     gene            complement(8304..8570)
                     /gene="yajC"
                     /locus_tag="ACFOCN_001194"
     CDS             complement(8304..8570)
                     /gene="yajC"
                     /locus_tag="ACFOCN_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HFC6970347.1"
                     /translation="MNQAVAQFAPLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGD
                     KVVLAAGFKGKVTRVGEQFFTVDIGQGTKIEVEVERNAIAAKVD"
     gene            8698..>9801
                     /locus_tag="ACFOCN_001195"
     CDS             8698..>9801
                     /locus_tag="ACFOCN_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HFC6970348.1"
                     /translation="MSLTRLILKFYALLRLFLGKNARTAWISHPACAGHEPGANHPDS
                     PDRILCIEQALRRAGIWQHLQTIEAEEISDTRLALVHSSKYLNRLESCLPQKGKIFRL
                     DNDTAISTGSLSAAHFAAGSAVQAVDMVMNRKAWHAFCAARPPGHHAGSGKAGGFCLL
                     NNVAAGVMHAIAEYRLKRIAVIDFDVHYGDGTAEIFKDDPRILFFNLFETDLFPFPEN
                     NDMPDGGNMVHLPLPPGTGSRTFREAVRRQWLPRLAAFKPELVLLSAGFDAHRLDESG
                     RLNLHEADFAWLTHKIIQTASGCPGKIVSVLEGGYTLEPLAQSAAEHIRVLAGLGKSD
                     AATAYQKTLDPTKKRFAKPKTGQVRQPTQSDRYD"
BASE COUNT         2510 a         2586 c         2433 g         2272 t
ORIGIN      
        1 tgcctgcgac gcttaacggc tgtctttcca ctgataatat ttcgagccga ggaaagaacc
       61 gagtttgcgc aaaaacggtt gcaggataat attcggctgg cgcaaccgct caaacggctt
      121 cagacggcat tcgtccccta aaattgcttc ggcaaccgcc agacctgcaa tgcctgttat
      181 cgccatcccg tgtccggaat aaccttgtgc ataaaaaaca tttgcggcca aacgtccgaa
      241 atgcgggaca aggttggcgg taatgtcgca ctccccgccc cacgaatatt cgattttgac
      301 atcgtcaagc tgcggaaaaa ctttaagcat atcttggcgg acaagctcgg tcatacgcgc
      361 aggattgtcg ataaactcgt tatccttacc gccgaaaagc agtctgccgt ccgcgctgag
      421 gcggtaataa tccaaaatat ggcggttgtc gcatactgcc atattgttac ggataagccc
      481 ttttgcgcgc gcccccaagg gttcggtcgc aataataaag gtgctaacgg caatcgcctt
      541 gcgttccaaa ggctggaata tcgggttcaa acctgcatag gtattgacgg catacaccag
      601 atttttgcat tcgacgctgc cttcgggggt gtaaaccagc caaccgtttt gataaggttc
      661 aatgcgtatc atgggagaat gctcaaaaat cttcgtacca gcttcggcag cggcgcgggc
      721 gatgcccaac gtgtaattga gcggatggag atgcccggac aagggatcga actgtgcgcc
      781 ttggtacata tcgctgtcaa gctgctgctt cagttcagtg ttatcccaga gttgataatg
      841 agttgcaccg taatattttt gggcgtgctc atgccattgt tgcaattctt cccaatgctg
      901 cgaacggatg gcaaccgtgg cataaccgcg ctgccaatcg caatcaatgg catgtttgcg
      961 gacgcgttcg tccaccagtt cgaccgcctg caaagactgt tgccaaaacc attgcgcttg
     1021 ctccaaaccg acctgttttt caatttcctc cataccgcag gcgtaatcgc tgataacctg
     1081 cccgccactc cgtcccgacg cgccgaaacc gatacgcgcg gcttccaaca caaccgtttc
     1141 atgtccctgc tccgccaagg gcaatgcagt gcacaaacca ctcaatccgc cgccgatgat
     1201 acaggtatcg gttttcagac ggcattgaag tttcggataa acagtatgag gattaaccga
     1261 actgaaataa taagaaggca gatattcttg aaaatcaggg cgaatcattg tgtttgcttt
     1321 atcgggtata ttttcggacg gaatgataca ggctgtcgag ccatatcgtc caaacagaaa
     1381 atcggttgaa gaaaacaggc tgacccagtc atgcggtcag cctgccttat taattaattt
     1441 gctttctcgg cagccaattt ttcttggcgg taggcttctg ccgcttctcg gtcacgcttg
     1501 gttgcctgcc tcatcatcca ataattgacg atgatgacca atgttccgat gatgccgatc
     1561 aggatggttg ccaaaacgtt catctgcgga tcaagaccca gcttgatttt ggagaaaatc
     1621 acctgcggca atgtggatga accggggccg gagaggaatg aggtaatcac caaatcatcc
     1681 aaagacaggg taatgccgag cagaaagcct gaagcgatgg caggggcaat caaaggcaaa
     1741 gtgatgacaa aaaagatttt cagcggacgc gcgcccaaat ccattgcggc ttcttcgagc
     1801 gattggtcaa gctcaaccag acgcgaacgg ataacaacgg taatgtatgc catgcacagc
     1861 gtcgtatgtc ctaagaaaat agtgaaaaag ccacgatcga agtagagatg ttgtaaccat
     1921 tcgctgccct gcaaaaatat ctgtacctga ataatcagca gcagcataga cagaccggta
     1981 atcacgtcgg gcatcaccat aggtgcggaa atcataccgg cgaacaaggt actgccgcga
     2041 aaacgtttaa tccgcgccat cgcatagcct gccagcgtgc ccaaaacgac ggcggcaagc
     2101 gaagacacaa cggcaatccg cagcgacagc caagcggctt ccaagatggt gtcgttttcc
     2161 agcaatgcgc cgtaccactt ggtcgaaaag ccgccccaaa cggttaccag cttggattcg
     2221 ttaaacgaat agatgaccaa aacaaccagc gggatataca gaaacgccag cgacagtgcc
     2281 aacatcagtt tcaagaacca agataatttg gatttctgca ttatttggct ccttcttcca
     2341 attcgcggtt ttcataatgc tgaaacaggg caatcggcac gaccagcagc gcgaccatca
     2401 cgacggcgac ggcggaagcc agcggccagt tgttttgatc gaagaacgcc tgccacaaga
     2461 ctttaccaat catcaggttt tccgaaccgc cgaccagctc gggaatgacg aactcgccga
     2521 cagcagggac gaaaaccagc atggagcctg caataatgcc ggttttcgac aaaggcaggg
     2581 taatcgtcaa gaacgatttg accggccccg cgcccaaatc ggaagccgct tcaagcaggc
     2641 ggttgtcgag tttcaccagt tgcgtgtata gcggcagaat cataaacggc agataggcgt
     2701 aaaccatcac caaattgagc gaaaaggcat tgtagaacaa atccaaaggc tcgctgataa
     2761 tacccatttt aatcaacagg ttgtttacaa taccgttatg cccgagcaga cccatccacg
     2821 catagacgcg caacaggaac gatgtccaaa agggcagcat aatggcaagc agcaaaccat
     2881 tgcggacaga aggattggca cgagaaatcg cataggcggt cggataaccg accaacaggc
     2941 aaatcactgt cgtcatcaat gcggttttga ttgaagacca gtaggtcatc agatagatat
     3001 tgctgttttc actgtcgccg aacgggttaa gggtatgcca aaaattttgg aaaatatcgg
     3061 catagttttg ataactgatg gtgatattca gacgacctaa atcttcgtcg atgctggtca
     3121 gcggcgtaaa cggcggaatg gcgatttctt gttcggcaaa gctgattttc agcacgatgg
     3181 cgaacggaat cagaaacagc accaaaagcc aaatatacgg tacggcaatc accacacgct
     3241 gccccgggcg gcggaacagt ttgtttttca gtttattaag gttcattgca ttccccttaa
     3301 atcaacggaa cagtggcgta ggctggtttt ccggccagct gatatacacg gtttcgtccc
     3361 aagttggcgg tgtaatgttg cgtacatacc agtaaggtgc aggaacttgg cttttgacga
     3421 cgcgcccgtt ggcgagtttg atatggtata tggcaaagct gcccaaatag gcgatttctt
     3481 ttaccgtgcc tttcgcccag ttgtagtcgc ccaaatattc gggtttttct ttatataaat
     3541 caatatcctc tggtcgaata ctaacccaaa ggtcctgctc gctcggacca cccaaaccgt
     3601 gatcgatgcg gacgtggttt tccaaacctt cgcattcgat aacggcatag tcggcatgat
     3661 cttcaatcac cacaccgtca aagatgttgg tttcgccgat aaactcggca gtgaagcggc
     3721 tgttgggata gtcgtacacg tcgctgggtg tgccgacttg ctgcaactga ccgtcagaca
     3781 taatggcgat gcgggtcgcc atcgtcatcg cctcttcttg gtcgtgcgta accataatac
     3841 aggttacgcc gacttgttcc agcgtattga ccaactcaag ctgggtttgt tggcgcagtt
     3901 ttttgtccaa tgcaccgagg ggctcatcca gcagtagaat tttcggacgt tttgccagac
     3961 tgcgtgccaa agcaatgcgc tgctgctgac caccagaaag ctggtgaggt ttgcgtttgg
     4021 caaatttggt catctgaacc aggcggagca tttcttcgac gcgcgcggcg atttcgcctt
     4081 taggcatttt gtcctgtttc agaccaaagg caatgttttg ttctacggtc atatgcggaa
     4141 aaagcgcgta actttggaac atcatattga tggggcggtc atagggtgca agtttggtaa
     4201 tatcctgacc atcaaggata attttcccct gattggggct ttccataccc gccagcatac
     4261 gcagcagcgt ggattttccg ctgccggaac tgcccaaaag ggcgaagatt tcgtgttgat
     4321 aaatgtccaa gtcgatgtta tcgacagcgt aattgtcacc aaactttttc accaagcctt
     4381 ggatttgcag ataaggtttg gctgaagacg cagtggttgc ggtcataatg gcaatactcc
     4441 aataaaaaaa cgagtaccgg caaaacggat tttcgaatgg gtgataaaaa gctgtttgat
     4501 tgctggcggg agtcgcaacg tctgatgccg tctgaaactc ttgtgaagcg cacgggcagc
     4561 atgaaatgga acaagattcc aaagaacttt atattatatt agtttatgcg gttttcgggc
     4621 aatatagtgg attaaattta aaccagtaca gcgttgcctt gccttgccgt actatttgta
     4681 ctgtctgcgg cttcgtcgcc ttgtcctgat ttaaatttaa tccactataa atatggattt
     4741 gagcttgtcg gaaagcaaca gaaaagaaaa caccgcccat ttttctgggc ggtgtcggaa
     4801 agcgtaatta tttacgcaga cccaagcggg taatcaacgc gcgatacgta tcgggctggg
     4861 tacggcgcaa gtaggccagc aggcggcggc gttggctgac cattttcaac aggccgcgac
     4921 ggctgtggtg gtctttgggg ttggctttga agtggggggt caggtcgttg atgcggaaag
     4981 tcaacagagc gacttgtact tcggaagagc cggtgtcgcc ttctttgcgt tggaaatctt
     5041 taacgatttg tgctttttgt tctacggtca gtgccataat gaaaactcca aaaatataag
     5101 aatccccata gggattcaga caagtttgcc aagcctgaag acaacggcaa actccctatg
     5161 cccaagatag gacaacgtgg cattatgaca caattcccgc atttctgcac aatattttaa
     5221 gaccgtggaa gtaaccgtta aaaatgccgt ctgaagcatt gtctgcttga gacggcaatg
     5281 ttcagacggc atatgcgctt caaaccacga tttcttcttt cttcttcggt tctttaccga
     5341 tattgtcgcg gctcaaaccg aacattagca gaagcgggct ggcaaccaat acggaagaat
     5401 aaatgccgaa cacgatgcca atggtcaacg ccatagaaaa gccgtgcaag gccgcaccgc
     5461 cgaacaccag catagaaaca accatcgcct cggtcgaacc gtgggtaatg atggtgcggc
     5521 tcatcgttgc ggtaatcgcg ttgtcgatga cttccggcac ggcatgtccg cgcatcgccg
     5581 gcttgcggaa gttttcacgg atacggtcga agacgacgac ggattcgttc acagaatagc
     5641 ccaatacggc aaggataccc gccaagacgg tcagcgaaaa ttcccattgg aagaaggcaa
     5701 agcagccgag aataatcacg atgtcgtgca tattggcgat aatggcagat acggcaaaac
     5761 gccattcaaa acgcatcgac aggtaaataa tgatgccgat aacgacaaaa cctaaagcca
     5821 tcaatccatt acttaccaat tcctcaccga cttgcgggcc gataaattcg acttggcgca
     5881 aggtaacgtc gggactgtct tttttcagca aatccataac ctgattggac aactgtgcgg
     5941 aagtaacacc ttctttgttc ggcaggcgga tcatgatgtg tttgttcgta cccaatgcct
     6001 gaacctgtac atcacctatt ttcagcgtat cgaggcgttc gcgcatctta ttgacatccg
     6061 caccctgctg atattggact tccattaccg taccgccggt aaattcgaca gagaaattca
     6121 ggcctttggt caccaagaag aacacggcag cgataaacgt aaccaacgaa atgaaggtcg
     6181 tcagtttgcc gtagctcata aacggaatat cgcgtttgat tttaaagagt tccatagctt
     6241 actccttacc tgccgcagtt tcggcttcag gtttccatac cgcaccgatg gaaatattct
     6301 gcaatttgcg tctgcgtccg taccacagat tgaccaacgc acggaatacg acgacggacg
     6361 aatacatcga agtcagaata cccaaacagt gtacgaccgc aaaaccgcgt accgggccgg
     6421 aaccgaatac caaaagcgcg ataccggcaa tcagcgaagt caggttggaa tcgacaatgg
     6481 tcgcccatgc gtgttggaaa ccgagattga ttgcctgctg cggcggcacg ccgacacgca
     6541 attcttcgcg gatacgttcg ttaatcaaga cgttggagtc gattgccata cccaaagtca
     6601 acgccagcgc ggccataccc ggtaacgtca acgttgcctg catagcagac aaaataccga
     6661 ttaggaacag tatgttggca ctcaatgcaa tggtagaaaa gaaacccatc agacgatagt
     6721 aaaccaccat gaatgcagca acgatggcaa aaccccataa agtcgaatgg aagccttttt
     6781 cgatgttctc cttacccaaa gacggaccga tggtacgttc ttcgacaatc tgcatcggcg
     6841 cggcaagaga accggcacgc aacagcaaag acgtatcatt ggcttcggct gtcgtcatgc
     6901 ttccggaaat ttccacgcgt ccgccggtaa tggcagtacg gataaccggc gcggttacaa
     6961 cctcggattt tccttggtcg atcaaaacca tcgccatgcg tttgccgaca tttgcggcag
     7021 tcagttcgcc gaaaatgctg ccgcccgcgc tgtccaagct cagactgacg gcaggtgcgc
     7081 ccatttggtc gaaactcggt tgcgcatcgt tgatgttgtc gcccgtcagc tcgacctgtt
     7141 tgctgattag cagagtttcg ggacgatctc cgccgcttga aagcagctca taaccgctcg
     7201 gcacgttgcc ttccaatgcc tcgcgcaact tggcaggatc gtcctccacc atacgcaatt
     7261 ccaaagtcgc ggtacggccg atgatgtctt ttgccttggc agtatcctga acgcccggaa
     7321 gctgcacgac gatacggtct gcacctgact gctggatgac gggttcggcc acgcccaact
     7381 cgttcacacg gttgtgcagg gtagtgatgt tctgtttgac cgcatcggaa cgcactttat
     7441 taaccgcctc ttccgaaagc gtcaagacga tattgctgcc gtctgaattc agcgttgctt
     7501 caggaaacag cttgcgcaac tgcggcagtg ccttttgcac atcacctgca tcctgcaaag
     7561 ggacggtcag gctgtttcca gcctgacgca ccgtgccgct gcggattttt tcgcggcgca
     7621 gttcgcggcg gatgtcgccc gaataacgtt caaacgtttt ctgcatcgcc gctttcatat
     7681 cgacctgcat ggtgaaatgc acgccgccgc gcaagtccaa acccaaaaac atcggattgg
     7741 ctttgatttt cgccatccat tcggggctgt ccgccaacag gttgagcgcg gtaatatacc
     7801 cttcgcccaa agtgttttcg atgacgtcgc gcgctttaag ctgcgtttcg gtgtctttga
     7861 aacgcacttt cagtgaattg tccacaacaa acatcccgtc ggtctgaata cccgcgtttt
     7921 gcagcgcggc atccactttg gattgagtct gttcgttgat gatgatggct tgtcggttgg
     7981 tcgatacctg cacggcgggt gtttcgccga ataggttggg cagcgaatac actgcggcaa
     8041 ccgcaatcgt gaacacaatc agcagatatt tccataaagg ataacggttc atcattgttc
     8101 cttaatggtt ggaaccccac cctttcggtg gtgtcggaat cgggctattt cagaagaggc
     8161 aaaaaccctt cccagccagg caagaccgga aggcggcatc ttgaatatgc cgccctgcgt
     8221 gtcggaacat ggtcaagcct tcggttggaa ttcaaaacaa agtgccgcat tcgggctttc
     8281 cagatgcggc ttgtcggcac aaatcaatcg acttttgcgg caatcgcatt gcgttctact
     8341 tcgacctcga tttttgtacc ctgtccgata tccacggtaa aaaactgttc gccgactctg
     8401 gttaccttac ccttgaaacc tgccgccaag accactttgt cgccgacttt caaggcggca
     8461 agcattgcct gatgcgcttt gaatttcttt tgctgcggac gcatgatcag gaagtagaac
     8521 accaccataa tcaacactaa aggagcaaat tgtgcaacag cttgattcat aatttatccg
     8581 ttctttctaa tatggttgaa aatcgagagg ggtatataat aacataagac cgtaaacaat
     8641 atatcgggtt tgccgtccgt accgaccgta taccgcagcc tgcccgtcca caaacccatg
     8701 tccttgaccc gcctaatctt gaaattctat gcactgttgc gccttttttt gggcaaaaac
     8761 gcccgcaccg catggatttc gcatcccgcc tgtgccgggc acgaacccgg cgcaaaccat
     8821 cccgattcgc ccgaccgcat cctctgcatc gagcaggcat tgcgccgcgc cggtatttgg
     8881 cagcacctcc aaaccataga ggcggaagaa atcagcgata cgcgcctcgc acttgtccac
     8941 tcgagcaaat atctgaaccg tttggaatct tgcctgcccc aaaaaggcaa gattttccgc
     9001 ctggataacg acactgcaat cagcacaggc tcgctgtctg ccgcacactt tgccgccggt
     9061 tcggcagttc aggcagtcga catggtcatg aaccgtaaag catggcatgc cttttgcgcc
     9121 gcccgcccgc ccggacacca tgcgggcagc ggcaaagccg gcggattctg cctgctgaac
     9181 aacgttgccg ccggcgtcat gcatgccatt gccgaatacc gcctgaaacg cattgccgtc
     9241 atcgatttcg atgtccacta cggcgacggt acggcagaaa tattcaaaga cgatccgcgc
     9301 atcctgtttt tcaacctgtt tgaaaccgac cttttcccct tccccgaaaa caacgatatg
     9361 cccgacggcg gcaatatggt gcacctgccc ttgccgccgg gaacgggcag ccgcacattc
     9421 cgcgaagccg tccgcaggca gtggctgccc cggcttgccg cattcaaacc cgaactggtg
     9481 ctgctgtcgg caggattcga cgcacaccgt ctagacgaat cgggcaggct caacctgcac
     9541 gaggcggatt ttgcctggct gacacacaaa atcattcaga cggcatcggg ctgccccggc
     9601 aaaatcgtat ccgtactcga aggcggctac acccttgaac ctctggcaca atctgctgcc
     9661 gagcatatcc gcgtgctggc ggggctgggc aaatccgatg ccgcaaccgc ctatcagaaa
     9721 acactggatc caacaaaaaa acggtttgcc aaaccgaaaa ccggacaggt gcgccaacct
     9781 acccaatccg accgttacga c
//
LOCUS       DAXIFD010000073         9712 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.073, whole genome shotgun sequence.
ACCESSION   DAXIFD010000073 DAXIFD010000000
VERSION     DAXIFD010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9712
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.073"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(148..381)
                     /locus_tag="ACFOCN_001196"
     CDS             complement(148..381)
                     /locus_tag="ACFOCN_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HFC6970349.1"
                     /translation="MKLTLMFREYCSLCHKMRDALKPFQNEYGFGLEVVDVDENPVLE
                     EKYNELVPVLLAGDEEICHWFLDEDRLKQFLER"
     gene            complement(547..747)
                     /locus_tag="ACFOCN_001197"
     CDS             complement(547..747)
                     /locus_tag="ACFOCN_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HFC6970350.1"
                     /translation="MFVCICNAVTDHQIKETIAAGATTMGDLQSQLGVASCCGCCGEL
                     AASFLTAHNAQPTVTAGINVQA"
     gene            complement(919..1794)
                     /gene="xerD"
                     /locus_tag="ACFOCN_001198"
     CDS             complement(919..1794)
                     /gene="xerD"
                     /locus_tag="ACFOCN_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HFC6970351.1"
                     /translation="MEEGLIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRM
                     LKDADEADLAAAVYVDGEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDK
                     NIPTLITEQQISRLLAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRG
                     CITALGKGDKQRMVPMGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLA
                     WMIVKEYAGRAGIGHISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVA
                     NVWLQGVVKEHHSRN"
     gene            complement(1846..2286)
                     /locus_tag="ACFOCN_001199"
     CDS             complement(1846..2286)
                     /locus_tag="ACFOCN_001199"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HFC6970352.1"
                     /translation="MDVKYEFTLPSSSGADFHSAEHLPLVVYFYPKDSTPGCTTEGLD
                     FNARLEQFEALGYTVVGISRDGVKAHQNFCAKQGFRFELLSDKDETVCRLFDVIKLKK
                     LYGKESLGIERSTFVLNKDGEIAHEWRKVKVAGHAQEVLETLSR"
     gene            2607..3545
                     /locus_tag="ACFOCN_001200"
     CDS             2607..3545
                     /locus_tag="ACFOCN_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HFC6970353.1"
                     /translation="MSIHTLKRLPSSLLLGLCLSLPSAHLFADNDILGQFLEQNMLTS
                     SDPIEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISK
                     LMSAMVVLDANLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRA
                     THALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQNVSTAKDLSLMVNAAA
                     QYPQIRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKA
                     NIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS"
     gene            3674..3967
                     /gene="hfq"
                     /locus_tag="ACFOCN_001201"
     CDS             3674..3967
                     /gene="hfq"
                     /locus_tag="ACFOCN_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HFC6970354.1"
                     /translation="MTAKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGQVESFDQYV
                     VLLRNTSVTQMVYKHAISTIVPARSVNLQHENRPQAAPASTLVQVETVQQPAE"
     gene            4051..4617
                     /locus_tag="ACFOCN_001202"
     CDS             4051..4617
                     /locus_tag="ACFOCN_001202"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6970355.1"
                     /translation="MLLQNILPFAHCLLRKALPEGGNALDGTAGNGHDTLFLAQTAGI
                     RGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILDGHENLKQYIPKPLDAAIFNFGWLP
                     GGDKSLTTRTETSIAALSATLSLLKENGMLIAVLYPGHENGKQEAEAVGQWAKNLPQE
                     QFAVLRYGFTNRKNSPPYLLAFEKLRQK"
     gene            4671..5045
                     /locus_tag="ACFOCN_001203"
     CDS             4671..5045
                     /locus_tag="ACFOCN_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HFC6970356.1"
                     /translation="MQYLFVKYSHQIFVTITILVFNIRFFLLWKNPEKPLAGFWKALP
                     HLNDTMLLFTGLWLMKITHFSPFNAPWLGTKILLLLAYIALGMMMMRARPRSTKFYTV
                     YLLAMCCVACIVYLAKTKVLPF"
     gene            5055..5549
                     /gene="folK"
                     /locus_tag="ACFOCN_001204"
     CDS             5055..5549
                     /gene="folK"
                     /locus_tag="ACFOCN_001204"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HFC6970357.1"
                     /translation="MNNRHFAVIALGSNLENPAQQVRAALDTLSSHPDIRLKQASSLY
                     MTAPVGYDNQPDFVNAVCTVSTTLDGIALLAELNRIEADFGRERSFRNAPRTLDLDII
                     DFDGISSDDTRLTLPHPRAHERSFVIRPLAEILPDFVLGKHGKVAELSKRLGNQGIRL
                     LPDR"
     gene            complement(5674..6153)
                     /locus_tag="ACFOCN_001205"
     CDS             complement(5674..6153)
                     /locus_tag="ACFOCN_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HFC6970358.1"
                     /translation="MPESIFKQISLDILKLHRDSVYSLLATSGCNCQVHEAAYVNIDG
                     KYYIALSCEPEVGEVKTGILLIEDESRNLRLSWVGSARELDCKDNAYKRALSALSRKL
                     GRCKDKLHTAVQPFLLELVPEKGRFSVGDEEVWISRNDLVRALYPVGYSMRQAVFQI"
     gene            complement(6373..7110)
                     /gene="ubiE"
                     /locus_tag="ACFOCN_001206"
     CDS             complement(6373..7110)
                     /gene="ubiE"
                     /locus_tag="ACFOCN_001206"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HFC6970359.1"
                     /translation="MGGQKTHFGFSTVNEDEKAGKVAEVFHSVAKNYDIMNDVMSAGL
                     HRVWKHFTINTAHLKKGDKVLDIAGGTGDLSRGWAKRVGKEGEVWLTDINSSMLTVGR
                     DRLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDAALKEMYRVLKPGGT
                     LLVLEFSKIYKPLEGAYDFYSFKLLPVMGKLIAKDADSYQYLAESIRMHPDQETLKQM
                     MLDAGFDSVDYHNMSAGIVALHKGVKF"
     gene            complement(7153..7521)
                     /locus_tag="ACFOCN_001207"
     CDS             complement(7153..7521)
                     /locus_tag="ACFOCN_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HFC6970360.1"
                     /translation="MNNIPVEIRLLKNRTVLVLTYGDEPKNLPAEFLRVYSPSAEVRG
                     HGVGQDVLQTGKADVQITDLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQ
                     EYLDKLAAAGASRFEKQSDC"
     gene            7641..9260
                     /gene="mnmC"
                     /locus_tag="ACFOCN_001208"
     CDS             7641..9260
                     /gene="mnmC"
                     /locus_tag="ACFOCN_001208"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HFC6970361.1"
                     /translation="MDNLVWDGVPDIRTLDQTIRKHAHPLNLIVCLPDNQIPDFQTAQ
                     DASDAECRLKHRLDQATQCLQFDSINLIEHILPDVRFWLVPPSRTRRLREHFHHISWQ
                     TEAIPQTESKPDKPWFALPQTSERQKPEHILVIGAGISGAATAHALASHGISVTVLEA
                     RKAAQAASGNRQGLLYAKISPHDTEQTELLLAGYGYTKRLLGHILPESETWGGNGIIH
                     LNYSRTEQQRNHELGLQKHHNHLYRSITQAEAEKIAGIPLSVPYDHPSCGLYWQHGVW
                     LNPPAFVRTLLNHPLIGLHEDTPLTDISHDGEKWIASTPNGIFSATHIIYCTGAHSPR
                     LPETNLAALPLRQIRGQTGLTPSTPFSEQLRCAVSGESYISPSWHGLHCYGASFIPNS
                     SHTGWNEAEEASNRQALAHLNPALSESLFAANPNPQKHQGHAAIRCDSPDHLPLVGAL
                     GDIAAMQQTYAKLALDKNYRIDAPCPYLPNAYANTAHGTRGLATAPICAAAVAAQILG
                     LPHPFSQRLRHALHPNRTIIRAIVRRKDLTP"
     gene            complement(9374..9491)
                     /locus_tag="ACFOCN_001209"
                     /pseudo
     CDS             complement(9374..9491)
                     /locus_tag="ACFOCN_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain protein"
BASE COUNT         2551 a         2972 c         1978 g         2211 t
ORIGIN      
        1 gttaatatgc aacatcgaag aagactagca atttaccaag catccaaacg tgcttccttt
       61 accggcaggt catccgcccc gcaaaaacgt aaagaacgtt gatttgaaaa aaatgccgcc
      121 tgaagtcctg cttcagacgg cattttttta ccgttcgaga aactgtttca acctgtcctc
      181 atccaaaaac cagtggcaga tttcctcatc tcccgccaac aaaacgggaa ccagctcatt
      241 gtatttttct tccaaaacag gattttcatc cacatcgacc acttccagcc cgaacccgta
      301 ttcattttga aaaggtttga gtgcatcgcg cattttgtgg cacaagctgc aatattcacg
      361 aaacatcaag gtcaatttca tccgcgtttc cttatctgtc aatttgcaca cgccaaagcc
      421 ttagacgcag cagaatcatg gtctatttgg gaaaaaacaa tgttttcaag gaagatgata
      481 ctcaagtcct gccaaaaaca gcaaaaatgc cgtctgaaca gttcagacgg catttccaaa
      541 accgttttac gcttgaacgt tgatacccgc cgtaaccgtc ggttgcgcat tgtgcgccgt
      601 cagaaacgaa gcggcaagct ccccgcagca gccgcagcag ctcgctacgc ccaattgcga
      661 ctgcaaatcg cccattgtgg tcgcgccggc ggcgattgtt tccttgattt gatggtcggt
      721 aacggcattg cagatgcaga caaacatttt gtgctccgtg tgttctcaaa ctatcgtacc
      781 gatagcggct tttattatcg tatgcaaata taaataaaaa cggttcgcat tgcaaggtcg
      841 gcatacacgg tttgtcttgg taatttttta tcaagtttgc attttcgatt gatttcttat
      901 taaaccgaag cagaagcctc agtttcggga atggtgttcc ttcactacac cctgcaacca
      961 tacattggca acatgggtat aaatctgcgt cgtattcaaa tcggcatgtc ccaacatatc
     1021 ctgaaccacg cgcaaatcca atccgtgctg caccaagtgc gtggcgaagg catggcgcag
     1081 gctgtgcggg ctgatgtgcc cgatgcctgc cctacctgca tattctttga caatcatcca
     1141 tgccaactga cgggaaatac ctgttttttt ctgactgaca aacaaggcat cgcaactcct
     1201 gcccttcaac aaggccggac gcgcctccgt gtaatagcgt cccacccaat acgccgattc
     1261 ctgccccatc gggaccatcc tctgcttgtc gcccttgccc agcgcggtaa tacagcccct
     1321 gtccaaatcc acattgccga agttcagccc gaccgcctcg ctgacgcgca agccggtcgc
     1381 gtacattaat tcaagcaggg ccttgtcccg caaaccgtgc ggcgtgtcgg tatccggtgc
     1441 ggcaagcagt cgggaaatct gctgttctgt aatcagggtc ggaatattct tgtcgatttt
     1501 gggcggtttc agcaaacggg tgggattgtc cgtccttatg ccttcacgct ccatccatat
     1561 atacaggcgt ttgcatgccg ataatgcgcg cgcctgcgaa ctccgttgct ctccgtcaac
     1621 ataaaccgcc gccgccaaat ccgcttcgtc cgcatccttc agcattctgc ccgattggga
     1681 caggcggcgg gcgatttttt ccaaatcgcg ccggtaaccg tttaaagtat tctgattgag
     1741 ccgcctgtcc aaccacagcg tttcaagcag cctgtcgatc aaaccttctt ccataccgtt
     1801 ccaaacaaat gccgtctgaa tcttcttcag acggcatggt tcacattatc gggaaagcgt
     1861 ttccaatact tcctgcgcgt gacccgccac tttgactttc cgccattcat gggcgatttc
     1921 tccatcctta ttcaagacga acgtactgcg ctcgatacct aacgactctt tcccgtacag
     1981 tttcttcaat ttgatgacat caaacaggcg gcacactgtt tcatccttgt cgctcaacag
     2041 ctcgaaccgg aaaccctgct tggcgcaaaa attctgatgc gcctttacgc cgtcgcggga
     2101 aataccgacc acggtataac ccaatgcctc aaactgttcc aaacgcgcat tgaaatccaa
     2161 gccttccgtc gtacagcccg gcgtactgtc tttcggataa aaatacacga ccaaaggcag
     2221 atgttctgcc gaatgaaaat ccgcaccgct gctcgaaggc agggtaaatt catatttcac
     2281 atccatagtc ctactcccga tattcccatt attcaaaacg gcacgcagag gcaccgccgc
     2341 aattgccaaa ccaaccccga ttctaccgcc ccaaaggaca aggattcaac tgccggaaac
     2401 atccaaaccg acacacgacg gcatgaaaaa tatccatgtc aaaccacaaa atatgttccg
     2461 atttaaaaac agaatgttat aaaacccaat ccccaaaaca caacaagacc gcccgcctac
     2521 gggcagtctc ctgtcagacg acatacttta cagatggctg ttttttcaac aaaataacgc
     2581 caatactcaa aaatatggaa tcaaaaatgt ccatccatac tctgaaacgc ctgccctcat
     2641 cgctgctgct cggtctctgc ctttccctgc cgtcagccca cctttttgcc gacaacgaca
     2701 ttttagggca atttttagaa cagaacatgc ttacctcctc cgatccgata gaaatattcg
     2761 ccgaaagcac aatacacccc accaacaccc aagccattac aggcggtctg attctctcct
     2821 cacagtctgc cctggtcgtc aacaacaaaa ccggacagat actgtatcag aaaaacgccg
     2881 acaggattat gcccatcgcc tccatttcca aactgatgag cgcgatggtc gttttggatg
     2941 caaacttgga catgaacgaa accgttacca ttacgcccga cgaaatcgac cgcctcaaag
     3001 ggaccggcag ccgtcttgcc ataggtacgg cacttacacg caaagaactg ctgcacctga
     3061 gcctgatgag cagcgaaaac cgcgccaccc atgcattggg cagaacctac cccggcggca
     3121 tgggcgcatt tgtcgccgcc atgaaccgta aagcccaaag cctcggtatg tacggcagcc
     3181 gcttttacga accgaccgga ctcaacttcc aaaacgtttc taccgccaaa gacctgagcc
     3241 ttatggtcaa cgccgccgcc caatatccgc aaatccgcac caactcgact tccaactacg
     3301 cctcggtaca gaccaaaaac gggcagcaga actacaaaaa ctccaatgcc ctggtcagag
     3361 aaggcatgtg gaacatcgaa ttgcagaaaa ccggctacat acgcgaagca ggcaggtcta
     3421 tggttgtcaa agccaacatt caaaatcaac ccgttaccat cgtattgctg aactcgccca
     3481 catccgccac acgcgtcaac gacgcccgca aaatcgaatc gtggatgctg cagcaacgct
     3541 cctgacatat aaatgcccgg cggaaaaccg cccaaacaca aaaaaaattg gtaatttttc
     3601 ctattcaagg ctacaattcg acacgcacag ggcgtctgcc cgatttcaca atcataataa
     3661 cggagttaaa aatatgacag ctaaaggaca aatgttgcaa gatcccttcc tgaacgccct
     3721 gcgtaaagag cacgttccgg tttcgattta cctggtcaac ggcatcaaac tgcaaggtca
     3781 ggttgaatct ttcgaccaat acgtcgttct tctgagaaac acttccgtca cccaaatggt
     3841 ttacaaacac gccatttcca ccatcgtacc ggcacgctcc gtcaacctac aacatgaaaa
     3901 cagaccccaa gccgcaccgg cttcgaccct cgtccaagtg gaaaccgtcc agcagcctgc
     3961 cgaataatcc gcacgaagca tgacgtgtca tatctttcaa taccttaccg acatcggtaa
     4021 ggtattttta ttttcagaca gcatttaaaa atgttattgc aaaacatcct tccattcgcc
     4081 cattgccttt tgcggaaggc acttcccgaa ggcggcaatg cgctggacgg caccgccggc
     4141 aacggacacg acaccctttt cctcgcacaa accgcaggca tccgggggaa agtgtgggca
     4201 ttcgacatcc agccgcaagc cctgaacaac acccgatgcc gtctgcagga agcaggttac
     4261 agcaatgtac ggttcatctt ggacggacat gaaaacctga agcaatatat tccaaagccg
     4321 ctggatgcag ccattttcaa tttcggctgg ctgcccggcg gggacaaaag ccttaccacc
     4381 cgcacggaaa ccagcattgc cgccctttct gccaccttat ccctactgaa agaaaacggt
     4441 atgcttattg ccgtcctcta tccgggacac gaaaacggca aacaggaggc agaagccgtc
     4501 ggacaatggg caaaaaacct gcctcaagaa cagtttgccg ttttacgtta cggctttacc
     4561 aaccggaaaa acagcccacc ctatctgttg gcatttgaaa aactgcgtca aaaataactg
     4621 tttgcggtaa aataagccga ttccaaccct tattttgata agagccgacc atgcagtatc
     4681 tgtttgtcaa atacagccac caaatcttcg ttaccatcac cattttggta ttcaacatcc
     4741 gttttttcct actttggaaa aatccagaaa agcccttggc gggcttttgg aaggcactgc
     4801 cacaccttaa cgacaccatg ctgctgttta cgggattgtg gctgatgaaa attacccatt
     4861 tctccccgtt caacgcgcct tggctcggta caaaaatcct gcttctgctc gcctatatcg
     4921 cattgggtat gatgatgatg cgcgcccgtc cgcgttcgac caagttctac accgtttacc
     4981 tgctcgccat gtgttgcgtc gcctgcatcg tttaccttgc caaaaccaaa gtcctgcctt
     5041 tctgaaacac cgttatgaac aacagacatt ttgccgtcat cgccctgggc agtaatcttg
     5101 aaaaccctgc ccaacaggta cgcgccgcat tggacacgct gtcgtcccat cctgacatcc
     5161 gtcttaaaca ggcttcctca ctgtatatga ccgcgcccgt cggttacgac aatcagcccg
     5221 attttgtcaa tgccgtctgc accgtttcca ccactctgga cggcattgcc ctgcttgccg
     5281 aactcaaccg tatcgaggct gatttcggac gcgaacgcag cttccgcaac gcgccgcgca
     5341 cattggattt ggacattatc gactttgacg gcatctccag cgacgacacc cgactcaccc
     5401 tgccgcatcc gcgcgcgcac gaacgcagtt tcgtcatccg ccctttggca gaaatcctcc
     5461 ctgattttgt tttaggaaaa cacggaaagg ttgccgaatt gtcaaaacgg ctgggcaatc
     5521 aaggtatccg tcttttaccc gacaggtaat tccgcacgcg gatgccgtct gaaagccttt
     5581 cagacggcat ttttcctttg ccgccaacac gcgtgcaaaa aaatcgcccc ttggaaaagg
     5641 ggcgcaaaag gaacacaaac cactaccaaa actttaaatc tgaaacactg cctgccgcat
     5701 actgtatccg acaggatata aagccctcac taaatcgttt cgagaaatcc aaacttcttc
     5761 atcgccgaca gaaaatctgc ctttctccgg taccagctcc aacagaaacg gttgaaccgc
     5821 cgtatgcaac ttgtccttac accgccccag ctttctagac aaggcggaca gggcgcgttt
     5881 gtaggcatta tccttgcagt caagctcccg cgcactgccg acccagctca aacgaaggtt
     5941 gcggctttca tcctcaatca gcaaaatgcc tgttttgact tcccccacct cgggctcgca
     6001 tgaaagcgca atataatatt tgccgtcgat gttgacatac gccgcttcat gcacctgaca
     6061 gttgcagccg gaagtggcaa gcagcgaata aacagagtcc cgatgcagtt tcaaaatatc
     6121 aagggaaatc tgtttaaaaa tactttccgg catttttccc tcctttcgtc tgctgcgttg
     6181 tttactggat tgactgcatt atacagacat ctcccaatct tgcaaatgat aattgttcct
     6241 attttttaaa aaatttataa attattgatg gatatgtgaa ttaattttaa gatttaaaat
     6301 ctctttctca aaaaaacaca aaaatgccgt ctgaaacgtg ttcagacggc attggcttca
     6361 caggcagtcc gtttaaaatt tcacgccctt atgcagcgcg acgatgcccg cactcatatt
     6421 gtgataatcc acgctgtcga agcccgcatc cagcatcatc tgtttcaaag tttcctgatc
     6481 ggggtgcata cggatggatt cggcgagata ctggtagctg tccgcatctt tggcaatcag
     6541 tttgcccatg accggcagca gcttgaacga atagaaatca tacgcgcctt cgagcggctt
     6601 gtagattttg gaaaactcca acaccagcaa cgtgccgcca ggtttcaaaa cacgatacat
     6661 ctctttcagc gcggcatctt tatgcgtcat gttccgcaag ccgaacgcca cggaaactaa
     6721 gttgaaataa ttgtcaggga aaggcagttt ttccgcatcg gcaagcgaca cgggcaaaat
     6781 catgccttcg ttcaacagac ggtcgcgccc gacggtcagc atagaggaat taatatcggt
     6841 cagccaaacc tcgccttcct tgccgacccg tttcgcccaa ccgcgcgaca aatcgcccgt
     6901 accgcccgca atgtccaaca ctttatcgcc ttttttcagg tgcgccgtgt tgatggtgaa
     6961 atgcttccac accctgtgca gccctgccga catgacatca ttcataatgt cgtagttttt
     7021 ggcgacggag tggaacactt ccgccacttt gccggctttc tcatcttcgt tgaccgtgct
     7081 gaacccgaaa tgcgtttttt gtccacccat attctaacca cctccctgat accgccctac
     7141 ggcatcccaa acttaacaat ctgattgctt ttcaaaacgc gacgcgcccg ccgccgccaa
     7201 tttgtccaaa tattcctgcc acatcgcatc gtatccgtat gccagtctgt gcagatacgc
     7261 ccaatcgtaa agaccgctgt cgtgcccgtc cgaaaaactg attttcagcg cgtactgtcc
     7321 gacaggctgc aaatccgtaa tttgcacatc tgccttaccg gtctgcaaaa catcctgtcc
     7381 cacaccgtgt ccgcgcactt ccgcactcgg cgaatagacg cgtaaaaatt cggcaggcag
     7441 atttttaggt tcgtccccat aagtcaaaac caacacggta cggtttttca acaaacggat
     7501 ttcaacagga atattattca aaaaacacct cggttcggca tacaatatcc ggcaggcgca
     7561 ggcgtgcctt caaacggcgc gtattttaac agctttatcc cgataccgat attcaaaccc
     7621 acactttaaa cggcattgat atggacaatc tcgtatggga cggcgttccc gacatccgca
     7681 cactcgacca aaccatccgc aaacacgcac acccgctcaa cctgattgtc tgcctccccg
     7741 ataatcagat tcccgatttt caaaccgcac aagatgcttc ggacgcggaa tgccgtctga
     7801 agcaccgttt ggatcaggca acgcagtgcc tccagttcga cagcatcaac ctcatcgaac
     7861 acatcctgcc cgatgtccgc ttctggctgg ttcccccttc acgcacccgc cgcctgcgcg
     7921 aacacttcca ccacatttcc tggcagaccg aagccatccc gcaaaccgaa agtaagcccg
     7981 acaaaccctg gtttgcactt ccacaaacat ccgaacggca aaaaccggaa cacatcctcg
     8041 ttatcggcgc gggcatatcc ggcgcggcaa ccgcccacgc cttagcatcg cacggcattt
     8101 ccgttaccgt attggaagcc cgaaaagccg cccaagccgc cagcggcaac cgccaagggc
     8161 tgctctacgc caaaatctcg ccgcacgaca ccgaacagac cgaacttttg cttgccggct
     8221 acggctacac caaacgcctg ctcggacaca tcctgcccga atccgaaacc tggggcggca
     8281 acggcatcat ccacctcaat tacagccgca ccgaacaaca acgcaatcac gaattgggtt
     8341 tgcaaaaaca ccataaccac ctctaccgca gcatcacgca ggcagaagcc gaaaaaatcg
     8401 ccggtatccc actgtccgtc ccatacgacc acccttcatg cggactctac tggcaacacg
     8461 gcgtatggct caatccaccc gcattcgtcc gcaccctcct caaccatccg ctcattggac
     8521 tacacgaaga cacaccgtta accgacattt cccacgacgg ggaaaagtgg attgcaagca
     8581 cgccaaacgg catattttcc gccacacaca tcatctactg caccggcgcg cacagccccc
     8641 gcctgcccga aaccaacctc gccgccctgc ctctcaggca aatacgcgga caaaccggcc
     8701 tcacaccgtc caccccgttt tccgaacaac tgcgttgcgc cgtttcaggc gaaagctaca
     8761 tcagcccgtc gtggcacgga ctgcactgct acggcgcgag ttttattccc aacagcagcc
     8821 ataccggatg gaacgaagcc gaagaagcct caaaccgcca agcattggca caccttaacc
     8881 ccgccctttc cgaatcattg tttgccgcca acccaaaccc ccaaaaacac caagggcacg
     8941 ccgccatacg ctgcgacagc cccgaccacc ttcccctagt cggcgcactc ggcgacattg
     9001 ccgctatgca acaaacttac gccaaactcg cgctggacaa aaactatcgc atcgatgccc
     9061 catgcccata tctgcctaat gcctacgcca acaccgccca cggcacacgc gggcttgcca
     9121 ccgcccccat ctgcgccgcc gccgttgcag cccaaatcct aggcttgccc catccctttt
     9181 cacaacgcct gcgccacgcc ctacacccca accgcaccat catccgcgcc atcgtcagaa
     9241 ggaaggatct aaccccttaa gcctttgccg catgccgtcc cgaccacaga aaatcatatt
     9301 caaataaaca taccaatcct gacggtaaaa tatcgaaaac acccataaca ttttcttccc
     9361 aaaataagga gtaaggaatg cctaacaaat tgcctttgct gtccaagatg aatgttccgt
     9421 aacattcgaa gacttcctta accctgccag ccgtttcggt ttctgtaccc cctgttagat
     9481 aaggaaggaa tgaaaaagcc ctgttgattg tatgaagtaa agggagttaa tttttgttaa
     9541 tcttcccttc tcaggaactc aatatataag gatgttaatt tttatttccc ttctcgagga
     9601 ctcaatatag tggattaaca aaaaccagta cggcgttgcc tcgccttgcc gtactatttg
     9661 tactgtctgc ggcttcatcg ccttgtcctg atttttgtta atccactata gt
//
LOCUS       DAXIFD010000074         9557 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.074, whole genome shotgun sequence.
ACCESSION   DAXIFD010000074 DAXIFD010000000
VERSION     DAXIFD010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9557
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.074"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..1254
                     /locus_tag="ACFOCN_001210"
     CDS             205..1254
                     /locus_tag="ACFOCN_001210"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6970362.1"
                     /translation="MSKQPTSKRQWRDGAAPSAKKTAKPFKSKARPKGETRKTATQAY
                     GQKASDGIKPQNAPKQRAAKAKKLVVRNPNQKIMEHARDLKERRSDLSRMEPERLQKV
                     LAASGVGSRREMEEWITNGWITVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRLPRI
                     ILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELVQ
                     RFAHPSFEVEREYAVRVLGGLTGEQMRVLTEEGVMLEDGLAKVERIREQGGEGANKWY
                     NVVIKEGRNREVRRIFESQGLTVSRLVRVGFGPIGLPNRLKRGQFYELNPAEVANILK
                     WAEMLLPGEYRRKKA"
     gene            complement(1323..2864)
                     /locus_tag="ACFOCN_001211"
     CDS             complement(1323..2864)
                     /locus_tag="ACFOCN_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HFC6970363.1"
                     /translation="MKFLDREASIAKPGFNRWLVPPAALAVHLAIGQIYAYSVFNAPL
                     TKLIGITESAAGDWKLTTVGWIFSIALAMLGTSAALFGTWMERVGPRKAIFAAACCFS
                     LGFFVSAFGVRTHNLFLLYLGNGVIGGVGLGLGYIGPVSTLMKWFPDKPGMATGLAIM
                     GFGGGAMLASPLSVSLMNAFSNAASVGVAETFAVLGLLYLALMMFGAFTIRVPADGWK
                     PEGYTAPKTQNKLVSSNHVNVSQAMKTPQFWLLFWVLCLNVTAGIGVLGQASVMIQEL
                     FSETSIGRQAAVGAGAAAGFVSLLSLFNMGGRFLWSSVSDKIGRKNTYTIFFVLGSLL
                     YFAVPSIGEGGSKALFIIGFCVIISMYGGGFAAIPAYLKDLFGTYQVGAIHGRILLAW
                     STAAVIGPVLVNYIRQSQIDSGIPAAQAYGVTMYIMACLLIIGLLCNLAVKSVHEKHH
                     EKDIKTAAHSGNPDDETAISDAYLVGEKVSGGGISVWWRWALAVIPLAYGVVMVFVKA
                     LDLFS"
     gene            complement(3157..4512)
                     /gene="xseA"
                     /locus_tag="ACFOCN_001212"
     CDS             complement(3157..4512)
                     /gene="xseA"
                     /locus_tag="ACFOCN_001212"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HFC6970364.1"
                     /translation="MSDFFHSDVLSVSELNAFAKSILENHLAGLWIAGEVSNLTRAAS
                     GHYYFSLKDSRAQVRCAMFKGAAARLAKPLKEGDHIEVAGKISIYETRGEFQITVNEV
                     RLKGLGQLYEAYDRLKAQLQAEGAFAAERKKPLPARPQCIGIVTSLAAAALRDVVTTL
                     KRRAPEIPVIVYPTPVQGTGSELQIAQAIKTASQRAECDVLIVCRGGGSIEDLWAFNE
                     EPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNRQESLHRLAQ
                     AQGRLKTVLEQRYFDASQKLDWLARQIRHPRQKLDEQRASIGKLAQTLSYSMKQNLRA
                     HTARFERQTQALQHYRPDVSVCKNNIVRLQTALPAAFSQLLTHRRQSLTAQAALLEAV
                     SPQHILERGFSVVKDTRGQVIRNADVLKQGQKLHITFADGETDVRVSKEQGQQDLFDC
                     I"
     gene            4709..5530
                     /gene="nadE"
                     /locus_tag="ACFOCN_001213"
     CDS             4709..5530
                     /gene="nadE"
                     /locus_tag="ACFOCN_001213"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HFC6970365.1"
                     /translation="MMRIFSTGGKMDTQAVITHIARWLDEYAARANAKGFVVGVSGGI
                     DSAVVSALAARTGRPTLLLDMPIRQHPDQLERARLHIRNLQRQYANVSAQTVDLTDTF
                     QTFEQTVGIHQTAFDNQPLSLANARSRLRMLTLYYYGQIHGLLVTGTGNKIEDFGVGF
                     FTKYGDGGVDISPIADLTKTQVYRLAEALGVDEAIQKAPPTDGLWDTERTDEEQMGAS
                     YPELEWAMGVYGTRKPEDFEGRQREVLEIYTRLHRAMQHKINPIPVCRIPPELLG"
     gene            complement(5598..6071)
                     /gene="dnrN"
                     /locus_tag="ACFOCN_001214"
     CDS             complement(5598..6071)
                     /gene="dnrN"
                     /locus_tag="ACFOCN_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein DnrN"
                     /protein_id="HFC6970366.1"
                     /translation="MTDFSVWETAPFGATVDHILQRYHNVHRAQFEELVPLAQKVAQV
                     HADTFPAEIAGLLAYMQNELLMHMMKEERMLFPMINQGVGRGAAMPISVMMHEHEEHD
                     RAIARLKELTDNFQPPEGACGSWTRLYALAKEMVEDLNDHIHLENDILFARVLDS"
     gene            6369..6701
                     /gene="trxA"
                     /locus_tag="ACFOCN_001215"
     CDS             6369..6701
                     /gene="trxA"
                     /locus_tag="ACFOCN_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HFC6970367.1"
                     /translation="MSSELIVHTSDAAFEKDVLNADIPVLLDFWAPWCGPCKMIAPIL
                     DDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLT
                     AFVEASIA"
     gene            complement(6754..7701)
                     /locus_tag="ACFOCN_001216"
     CDS             complement(6754..7701)
                     /locus_tag="ACFOCN_001216"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6970368.1"
                     /translation="MTDITPFANRLGKNIKHLMKWAKRNGIEAWRIYDRDIPQFPFAA
                     DVYGDRIHLQEYDTGWLMRPEEYEAWLAEVLEAVAFVTGFEPEQIRLKRRERQKGLQQ
                     YEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSY
                     TGSFTVYAATGGAASSETVDLSNTYLDWARRNFELNGIDTERHKIVRADVFQYLQTAY
                     GEGRRFDLIVMDPPSFSNSKKMSDILDIQRDHKKLIDGAVKLLASDGILYFSNNLRSF
                     VLDDLVSEQYAVKDISKQSVPEDFRNKKIHRCWEIRHKS"
     gene            8029..9417
                     /locus_tag="ACFOCN_001217"
     CDS             8029..9417
                     /locus_tag="ACFOCN_001217"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6970369.1"
                     /translation="MSIKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIM
                     ASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNM
                     RWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEAD
                     RMLDMGFIDDIETIVEATPTDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQG
                     KIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL
                     HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRI
                     GRTGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKG
                     KGGWGDRKSGGRRGDHKPGKEGFGGKTRGEGFKKEGFKKDGFKKTGEGFKGKRKAGDS
                     FAGRGERRYKDR"
BASE COUNT         2333 a         2658 c         2534 g         2032 t
ORIGIN      
        1 ttgaaagatt ctacccccgc acgcaaaccg atttcaaccg ttgcacaaac tttgcctcgc
       61 cacaagccgc agcgacgatt tcatccgcaa aaccgccgca tcaggtacaa tatcgaaccg
      121 tccgactgag gacggcattt tatcaacccg tcctgccgca tacgccgcag aagaaccgct
      181 ttatcaagcg agttaggaaa aatgatgtcc aaacagccca ccagcaaacg ccaatggcgc
      241 gacggcgcag ccccgtctgc caagaaaacc gccaaacctt tcaaaagcaa agcccgtccc
      301 aaaggcgaaa cgcgcaaaac cgccacccaa gcttacggac aaaaagcttc agacggcatc
      361 aagccgcaaa acgcccccaa acagcgcgcc gccaaagcca aaaaactcgt cgtccgcaat
      421 cccaaccaaa aaattatgga acacgcgcgc gatttgaaag aacgccgcag cgacctgtcg
      481 cgcatggaac ccgaacgcct gcaaaaagtg cttgccgcgt ccggcgtcgg ctcgcgccgc
      541 gaaatggaag aatggattac caacggctgg ataacggtca acggcaaaac cgcgcaactg
      601 ggcgacaaag ttacccccga cgaccacgtt accgtcaaag gcagcatcat caagctcaaa
      661 tgggcggacc gcctgccgcg catcatcctg tattacaaac aagaaggcga aatcgtttcc
      721 cgtgacgacc cgcaaggccg cgtcagcata ttcgaccgcc tgccgcaggc cgccagcagc
      781 cgctgggtcg ccatcggacg cttggacatc aacaccagcg gacttctgat tcttaccacc
      841 tccggcgaac tcgtccaacg tttcgcccac cccagcttcg aagtcgaacg cgaatacgcc
      901 gtgcgcgtct tgggcgggct gaccggcgaa caaatgcgcg tcctcaccga agaaggcgtg
      961 atgctcgaag acggcttggc aaaagtcgaa cgcatccgcg aacaaggcgg cgaaggcgcg
     1021 aacaaatggt acaacgtcgt gattaaagaa ggccgcaacc gcgaagtgcg ccgcattttt
     1081 gaaagccaag gactcaccgt cagccgcctc gtgcgcgtcg gcttcggtcc catcggactg
     1141 cccaaccgcc tcaaacgcgg gcagttctac gaactcaacc ccgccgaagt cgccaacatc
     1201 ctcaaatggg cggaaatgct gctgccgggc gaataccgcc gcaaaaaagc ctaaacccgc
     1261 caaaacacaa aaatgccgtc tgaaacatct gctgtttcag acggcatttt attcgggcgt
     1321 tttcaggaga aaaggtcgag tgctttgaca aagaccatca ccacgccgta ggcgagtggt
     1381 atgacggcca atgcccaacg ccaccagacc gatatgccgc cgccggaaac tttttcgccc
     1441 acaaggtaag cgtcggatat ggcggtttcg tcgtcggggt tgccgctgtg tgcggcggtt
     1501 ttgatgtctt tttcgtggtg tttttcgtgt acggatttga cggcgaggtt gcacaacaaa
     1561 ccgataatca gcaggcacgc catgatgtac atggttacgc cgtatgcctg tgccgccggt
     1621 atgccgctgt cgatttggct ttggcgtatg taattgacca gtaccgggcc gatgacggcg
     1681 gcggttgacc aggccagcag gatgcgcccg tgaatcgcgc cgacctgata ggtgccgaac
     1741 aggtctttca ggtaggcggg aatggcggca aatccgccgc cgtacatgga aataatcacg
     1801 caaaagccga tgatgaacag ggctttgctg ccgccctcgc cgatggaggg aacggcgaaa
     1861 tacagcagcg agccgagtac gaagaagatg gtgtaggtgt ttttgcgtcc gattttgtcg
     1921 gaaacgctcg accacaaaaa gcgtccgccc atgttaaaca ggctcaggag gctgacgaag
     1981 cctgccgccg cacctgcgcc gactgctgcc tgcctgccta tggaggtttc ggaaaagagt
     2041 tcctgaatca tcacggatgc ctgacccaat acgccgatgc cggcggttac gttcaggcac
     2101 aatacccaga acaacagcca aaactgcggc gttttcatgg cttgggacac gttgacatga
     2161 ttactgctga ccagcttgtt ttgcgttttc ggcgcggtat agccttcagg tttccagccg
     2221 tcggcaggta cgcggatggt aaacgcgccg aacatcatca gtgcgaggta aagcaggccc
     2281 aatacggcaa aggtttcggc aaccccgacc gaagcggcgt ttgaaaaggc gttcatcagt
     2341 gatacggaaa gcggagaggc cagcattgcg ccgccgccga aacccataat cgccaaaccg
     2401 gtcgccatac ccggcttgtc gggaaaccat ttcatcagtg tggaaaccgg cccgatgtag
     2461 cctaagccta agcctacgcc gccgatgacg ccgttgccca aatagagcag gaagaggttg
     2521 tgcgtacgca cgccgaatgc ggatacgaag aagcccaggc tgaaacagca ggcggcggca
     2581 aatatggctt tgcgcggacc tacccgttcc atccatgtgc cgaacagggc agccgacgtg
     2641 cccagcatcg cgagtgcgat actaaaaatc caacctacgg tcgtcagctt ccaatctccg
     2701 gccgccgatt cggttatgcc gataagtttg gtcagcggcg cgttgaatac ggaataggcg
     2761 taaatctgcc cgatggcaag gtgcaccgcc aatgctgcgg gcggtacgag ccaacggttg
     2821 aaacccggct tggcaatgct tgcctcacgg tctaaaaact tcataacatc ctctttctgt
     2881 cagttgaaaa ataaaatttc atttgcccaa tggaaactta ttgaaaatta taaaaaaata
     2941 tcggatcggt tttttatccg ccccaagatg ccccgtctga aacatttcgg gtgtacggaa
     3001 aggtttctgt tttttccgac aaattcctgc ggcttttcgc ttccggattc ccgctttttc
     3061 aggaatgacg aattaaagat tatcttaagg tcaagggact ggattcccgc tttcgcggga
     3121 atgacggcgg agggggagcg gtttttccga ttgggtttaa atgcaatcga acaaatcctg
     3181 ctgcccttgt tctttgctta cgcgcacgtc ggtttcgccg tcggcgaagg taatgtgcag
     3241 cttctgcccc tgcttcaaaa catcggcgtt gcggatgact tgtccgcgtg tatctttgac
     3301 gacggaaaag ccgcgttcca aaatgtgctg cggcgaaacg gcttcgagca atgcggcttg
     3361 ggcggtcagg ctttggcggc ggtgggtaag cagttggctg aaggcggcgg gcaatgccgt
     3421 ctgaaggcgg acgatgttgt ttttgcaaac ggaaacatca ggacggtaat gttgcagggc
     3481 ttgggtttgg cgttcaaaac gggcggtgtg ggcacggagg ttttgcttca tagagtaaga
     3541 cagcgtttgc gccagcttgc cgattgaagc gcgctgctca tcaagttttt ggcgcggatg
     3601 acggatttgc cgcgcaagcc agtcgagttt ttggctggca tcgaaatagc gttgttccaa
     3661 aacggttttc agacggcctt gcgcctgagc gagacgatgt agcgattctt ggcggttggg
     3721 gctgaccagc tccgccgcac cggtcggcgt gggcgcgcgc acgtcggcga caaaatcggc
     3781 aagcgtgaaa tcggtttcgt gtcccacgcc actgacgacg ggaaccgtgc aggcttcgat
     3841 tgcgcgcacg accggttctt cgttaaacgc ccacaagtct tcaatgctgc cgccgccgcg
     3901 acagacaatc aacacgtcgc attcggcgcg ttgcgaggcg gttttaatcg cttgtgcgat
     3961 ttgtaactcg ctgcctgtgc cttgaacagg tgtcggataa acgataacgg ggatttcggg
     4021 tgcgcggcgt ttcaaggtag taacgacatc gcgcaaagcc gccgccgcca gactggttac
     4081 gatgccgata cattgcggtc gggcgggcaa aggtttcttg cgttccgccg caaacgcgcc
     4141 ttccgcctgc aactgcgcct tcaaccgatc gtaggcttcg taaagctgcc ccaagccctt
     4201 gagccgcact tcgttcacgg taatctgaaa ttcgccccgc gtttcataaa tactgatttt
     4261 gcccgccact tcgatatggt cgccttcttt caaaggtttc gccaaacgcg ccgccgcacc
     4321 cttgaacatc gcgcaacgca cctgcgcgcg gctgtctttg agcgagaaat aataatgccc
     4381 gctggcggca cgggtcaggt tggacacttc gcccgcaatc cacagaccgg caaggtggtt
     4441 ttccaaaata cttttggcaa atgcgttcaa ctcggaaacg gacaacacgt cagaatggaa
     4501 aaaatcagac atcgaatcaa tcaaatagta aaaaatatga atatgttttg aagcccaagg
     4561 cggcatagag ccgcctaaat tgtcaacaat attataacac gcgccatctt gccgcccgcc
     4621 ttttcccata tgactttttt aagcggggaa tgggaaaaat attcatcaac ctgcctgcaa
     4681 tctattcaaa ttgaaccgcc gacaagctat gatgcggata ttttcgacag gaggaaaaat
     4741 ggatacgcag gcagttatca cacatatcgc ccgatggttg gacgaatacg ccgcacgggc
     4801 aaatgcaaaa gggtttgtcg tgggcgtttc cggcggcatc gattccgccg tcgtctccgc
     4861 actcgccgcc cgcaccggcc gccccacgct gcttctggat atgccgatac gccaacaccc
     4921 cgaccagctt gagcgggcaa ggctgcacat ccgcaatctg caacggcaat atgccaatgt
     4981 aagcgcgcaa acggtcgacc tgaccgacac cttccagacc tttgaacaaa ccgtcggcat
     5041 tcatcagacg gcatttgaca atcagccgct ttccctcgcc aacgccagaa gccgcctgcg
     5101 tatgctgacc ctgtactact acgggcagat acacggactg ctggttacgg ggacaggtaa
     5161 taagattgaa gatttcggcg tgggcttttt tactaaatac ggcgacggcg gcgtagacat
     5221 cagcccgatt gccgacctga ccaaaacgca ggtttaccgg cttgccgaag cattgggcgt
     5281 ggacgaggcg attcaaaaag ccccgccgac cgacggcctg tgggatacgg aacgcaccga
     5341 cgaagaacag atgggcgcaa gctatcccga actggagtgg gcaatgggcg tgtacggcac
     5401 gcgcaaaccc gaagattttg aagggcggca gcgcgaagtt ctggaaatct atacgcggct
     5461 tcaccgcgcc atgcagcaca aaatcaaccc gattcccgtg tgccgcatcc cgcccgaatt
     5521 gttgggctga acgtgaaaat gccgtctgaa gcggaaaacc gtgtttcaga cggcatggaa
     5581 atatccggac gcgctcctta agaatcgagt acgcgggcaa acagaatatc gttttccaaa
     5641 tgaatgtggt cgttcaaatc ctccaccatt tctttcgcca gcgcgtaaag ccgcgtccag
     5701 cttccgcaag ccccttctgg cggttggaaa ttgtcggtca gctctttgag ccgtgcgatg
     5761 gcgcggtcgt gttcttcgtg ttcgtgcatc atcacgctga tgggcattgc cgcaccgcgt
     5821 ccgacaccct gattaatcat cggaaacagc atcctttcct ctttcatcat atgcatcagc
     5881 agttcgttct gcatataggc aagcagcccg gcaatttccg ccggaaaggt atcggcatgg
     5941 acttgggcca ctttctgagc cagcggcacc aattcttcaa attgtgcgcg gtggacattg
     6001 tggtagcgtt gcaggatatg atcgacggtt gcaccaaagg gggcggtctc ccaaacggaa
     6061 aaatcagtca tcgcagtgtt ccttttacag ggtttcgggt ttggttttga acattcatac
     6121 tttaagaatc aattcaaacg gagcatacac cgcccgcgcg cttctgtaca gcctcaaacg
     6181 tattccttac attttgataa taaaagtaat tttcagaaat aaaatactgt ccgaaccgtt
     6241 ttttagaatt tgcaaaggcg attggggcgg tacagaaaaa ctattatccc gcccgcccac
     6301 ttgaaatttt tatgcccaag ccctatcctg cacgctatcg tgccaatccc aaccgaaaag
     6361 gaaaaataat gagcagcgaa ttgattgtac acaccagcga tgccgctttt gaaaaagacg
     6421 ttttaaatgc agatatcccc gtcctgctgg acttttgggc tccgtggtgc ggcccctgca
     6481 aaatgattgc cccgattttg gacgacattg ccgccgaatt tgaaggccgt ctgaaagtgg
     6541 tcaaaatcaa catcgacgac aacgaagcca ccccgtcccg tttcggcgtg cgcggcattc
     6601 cgaccctgat ggtgttcaaa aacggcgaag tcgtcgccac caaagtcggc gcattggcaa
     6661 aaggtcagct gaccgccttt gtcgaagcct ctatcgcctg ataaagcgca atcgaaaaag
     6721 ccgccggaag attccggcgg ctttttcgca cccttaagat ttgtggcgga tttcccagca
     6781 cctatggatt tttttgttgc ggaaatcttc gggaacggat tgtttggaaa tgtctttgac
     6841 ggcgtattgt tccgatacca agtcgtctaa gacgaagctg cgcaggttgt tggaaaagta
     6901 caaaatgccg tctgaagcga gcagcttcac cgcgccgtca atcagctttt tgtggtcgcg
     6961 ctggatgtcg aggatgtcgg acattttctt gctgttggaa aaactgggcg ggtccatcac
     7021 aatgaggtcg aaccgcctgc cttccccata tgccgtctga agatattgga acacgtcggc
     7081 gcggacgatt ttatgccgtt ccgtatcgat gccgttcaat tcaaaattgc gtctcgccca
     7141 atcgagataa gtgttagaca aatcgacagt ttcgctggat gccgcgccgc cggtggcggc
     7201 atagacagtg aagctgccgg tgtaggaaaa caggtttaaa aaacgtttgc ccgccgccgt
     7261 ttcgccgact tttttgcgcg tgtttcgatg atccaaaaaa agccccgtat ccaaatactt
     7321 atcaaggttg acccaaaact tgcggccgtt ttcggtgatg acgaaatcgt cgcccgcctt
     7381 gccggttttt tcgtattgct gcaaaccttt ttggcgttcg cggcgtttga ggcggatttg
     7441 ttcgggttca aaaccggtaa cgaaagcgac ggcttccaag acttcggcaa gccacgcttc
     7501 gtattcttcg ggccgcatca gccagccggt atcgtattcc tgaaggtgga ttcgatcgcc
     7561 gtaaacatcg gcggcaaagg ggaattgggg gatgtcgcgg tcgtaaatgc gccaggcttc
     7621 aatgccgttg cgtttcgccc atttcataag gtgtttgatg tttttgccca agcggttggc
     7681 aaacggtgtg atgtcggtca ttggtttcag gcggaataaa gtggaaaacg gcaattttac
     7741 tgtaattaac gcccgattgc ttgaccgttt cgggcaaacc ctataccatc cgccgcttat
     7801 cttgtcatac gaagccatcg ccttccaacc taaaccgccc ttacgggcgc gtttcttttg
     7861 ttgctttgat tttgcaaagc ctttctgtgc aggttgtcgt cgatgtaaac cacaagcaag
     7921 ccgcttgcga caaccctgta acttcacatt ccccgtatcg ttacccttcc ctgcttcagg
     7981 ccgtctgaac ctttcggacg cgggcgttgt tgtcttccaa ggatagccat gtctattaaa
     8041 tttgccgatt tgaaccttga taaaaacatt ttgtccgccg tcagcagcga gggttacgaa
     8101 agcccgacgc cgattcaggc gcaggcgatt ccgtttgctt tggaaggccg cgacatcatg
     8161 gcttcggcgc aaaccggctc cggcaaaacc gccgcctttc tgttaccgac tttgcagcga
     8221 ctgaccaaac gcagcgaaaa accgggcaaa ggcccgcgtg ctttggtgtt gaccccgacc
     8281 cgcgaattgg cggcacaagt ggaaaaaaac gcgctggcgt atgccaaaaa tatgcgctgg
     8341 ttccgtaccg tcagcatcgt cggcggcgca tcgttcggct accaaacccg cgccctgagc
     8401 aaaccggtcg atctgattgt cgccacgccg ggccgcctga tggacctgat gcaaagcggc
     8461 aaagttgatt ttgaacgttt ggaagtgctg attttggacg aagccgaccg tatgttggat
     8521 atgggcttta tcgacgacat cgaaaccatc gtcgaagcca ccccgaccga ccgtcagact
     8581 ttattgttct ccgccacttg ggacggcgcg gtcggcaaac tggcacgcaa actgaccaaa
     8641 gaccctgaaa tcatcgaagt cgaacgcgtg gacgaccaag gcaaaatcga agaacaactg
     8701 ctgtactgcg acgatatgcg tcacaaaaac cgcctgctcg accacatcct gcgcgatgcc
     8761 aatatcgatc aatgcgtgat tttcacgtcc accaaagcga tgaccgaagt catcgcggat
     8821 gaattgtacg aaaaaggttt cgccgccaac tgcctgcacg gcgacatgcc gcagggctgg
     8881 cgcaaccgca cgctgatgga tttacgcaaa ggccgctgca aaattttggt tgccaccgac
     8941 gttgccgcac gcggtatcga cgtaccgacc attacccacg tcatcaacta cgacctgccg
     9001 aaacaggcgg aagactacgt ccaccgcatc gggcgcaccg gccgcgcagg ccgcacgggt
     9061 attgcgatta cgtttgccga agtgaacgaa tacgtcaaag tccacaaaat cgaaaaatac
     9121 attaaccgca aactgcccga actgaccatc gaaggcatgg aaccgacccg caaacgcaaa
     9181 tccgcaggcg gtaagccaaa aggcaaaggc ggctggggcg ataggaaatc cggcggccgg
     9241 cgcggcgatc ataaaccggg caaagaaggc ttcggcggca aaacgcgcgg cgaaggtttc
     9301 aagaaagaag gctttaagaa agacggtttc aaaaaaaccg gcgaaggctt caaaggcaaa
     9361 cgtaaagccg gcgattcttt tgcaggcaga ggcgaacgcc gttacaaaga ccgctaagcc
     9421 ccaacctgcc tcataaacca atgccgtctg aaaccgattt cgagtttcag acggcatttt
     9481 tgcaatgttt caacaccgcc cggctttgat acccaaagga ttaatctgca atatagtgga
     9541 ttaacaaaaa ccagtac
//
LOCUS       DAXIFD010000075         9535 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.075, whole genome shotgun sequence.
ACCESSION   DAXIFD010000075 DAXIFD010000000
VERSION     DAXIFD010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9535
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.075"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(3..680)
                     /locus_tag="ACFOCN_001218"
     CDS             complement(3..680)
                     /locus_tag="ACFOCN_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISNme3 family transposase"
                     /protein_id="HFC6970370.1"
                     /translation="MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRG
                     INPIFLKIRHRIAALCEQSSPLSGVVELDESYFGARRIRGKRGRGASGKTIVFGILKR
                     NGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSN
                     EFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKETEFRFNHRHEDLGKILMK
                     MLRNNPI"
     gene            728..1300
                     /locus_tag="ACFOCN_001219"
     CDS             728..1300
                     /locus_tag="ACFOCN_001219"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6970371.1"
                     /translation="MLLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVIDAG
                     YDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHRVNPT
                     EGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMTRL
                     PTFLCNDVVKNPQVEKYLADYQAHLEKVFG"
     gene            complement(1509..2894)
                     /gene="pntB"
                     /locus_tag="ACFOCN_001220"
     CDS             complement(1509..2894)
                     /gene="pntB"
                     /locus_tag="ACFOCN_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008750 - proton-translocating NAD(P)+
                     transhydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HFC6970372.1"
                     /translation="MSSGLVTAAYIVAAILFIFSLAGLSKQETAKQGCYSGIAGMAVA
                     LFVTVFSDNTHGLGWIIIAMLIGAAIGIYKAKKVEMTEMPELIALLHSFVGLAAVLVG
                     FNSYIEPGNVSHDMHTIHLVEVYLGIFIGAVTFTGSLVAFGKLNGKISSSPLQLPAKH
                     KLNALALAVSFVLLLVFVGIDGSGFILLIMTLIALAFGWHLVASIGGADMPVVVSMLN
                     SYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFVSVIAGGFGSDSG
                     TSSSGSQEIGEYREVKAADVAEMLKGANSVIITPGYGMAVAQAQYPVAEITELLRKNG
                     TEVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVVLVIGANDTVN
                     PAAQTDPNSPIAGMPVLEVWKAKEVVVFKRSMNTGYAGVQNPLFFNENSVMCFGDAKK
                     TVDDILSELKK"
     gene            complement(2960..3343)
                     /locus_tag="ACFOCN_001221"
     CDS             complement(2960..3343)
                     /locus_tag="ACFOCN_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HFC6970373.1"
                     /translation="MTFAYWCILIACLLPLFCAAYAKKAGGFRFKDNHNPRDFLAHTQ
                     GTAARAHAAQQNGFEAFAPFAAAVLTAHAIGNAGQATVNTLAGLFILFRLAFIWCYIA
                     DKAALRSLMWAGGFACTVGLFVAAA"
     gene            complement(3347..4888)
                     /locus_tag="ACFOCN_001222"
     CDS             complement(3347..4888)
                     /locus_tag="ACFOCN_001222"
                     /EC_number="7.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HFC6970374.1"
                     /translation="MKIGIPRESLSGETRVACTPATVALLGKLGFETVVESGAGLAAS
                     LDDAAYQAAGATVADKAAVWACPLLYKVNAPSEGELPLLKEGQTIVSFLWPRQNEALV
                     EALRAKKVNALAMDMVPRISRAQALDALSSMANISGYRAVIEAANAFGRFFTGQITAA
                     SKVPPAQVLVIGAGVAGLAAIGTANSLGAVVRAFDTRLEVAEQIESMGGKFLKLDFPQ
                     ESGGSGDGYAKVMSDEFIAAEMKLFAEQAKEVDIIITTAAIPGKPAPKLITKEMVESM
                     KSGSVIVDLAAATGGNCELTRPGELSVTGNGVKIIGYTDMANRLAGQSSQLYATNLVN
                     LTKLLSPNKDGEITLDFEDVIIRNMTVTRDGEITFPPPPIQVSAQPQQTPSEKAAPAA
                     KPEPKPVPLWKKLAPAVIAAVLVLWVGAVAPAAFLNHFIVFVLACVIGYYVVWNVSHS
                     LHTPLMSVTNAISGIIVVGALLQISQGNGFVTLLAFIAILIASINIFGGFAVTRRMLN
                     MFKKG"
     gene            5178..6011
                     /gene="serB"
                     /locus_tag="ACFOCN_001223"
     CDS             5178..6011
                     /gene="serB"
                     /locus_tag="ACFOCN_001223"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HFC6970375.1"
                     /translation="MPHALVLQFPSAEALPSDFPSRLPEPDCADEKRMRFIVEEGFSL
                     SGADAALLGSRQIDHVVLPDMDFGELGLIVSDMDSTLITIECVDEIAAGVGLKDKVAE
                     ITERSMRGELDFEQSLRSRVALLAGLDEQILADVYENVLKLSPGAEFLLDECKRHDVK
                     FLLVSGGFTFFTERLQQRLGFEYQHANVLEIENGRLTGRLKGRIIDAQAKADLLSEYR
                     SRLGLQPHQVLAMGDGANDIPMLKEAGIGVAYRAKPKARAAADACINFGGLERVRGLF
                     G"
     gene            6075..7297
                     /locus_tag="ACFOCN_001224"
                     /pseudo
     CDS             6075..7297
                     /locus_tag="ACFOCN_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360679.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
     gene            7462..9042
                     /gene="purH"
                     /locus_tag="ACFOCN_001225"
     CDS             7462..9042
                     /gene="purH"
                     /locus_tag="ACFOCN_001225"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HFC6970376.1"
                     /translation="MPSIKRALISLSDKTGAVEFAQTLTKLGVEILSTGGTAKLLADA
                     GVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLDEHVAKMEEHGIGNIDLVCV
                     NLYPFAATIAKPNCTLEDAIENIDIGGPTMVRSAAKNWKHVAIVTDTADFPAIAAELE
                     ANNGALSDKTRFNLSRKAFSHTAQYDGMISNYLTSLSDDVLSGEPEIGEFPSQFNQSW
                     IKVQDMRYGENPHQRAAFYRDIDPAAGSLSAYKQLQGKELSYNNIADADAAWEAVKSF
                     DAPACVIVKHANPCGVAVAADTLTAYKLAYVTDTTSAFGGIIAFNREVDGETVKQITD
                     NQFMEVLMAPKFTAEALEIAAAKKNVRVLEVPLEAGANRFELKRVGGGLLVQTPDIHR
                     LNRADLKVVSKRQPTEQEWNDLMFVWNVAKYVKSNAIVFGKGGQTYGIGAGQMSRVDS
                     TRIAARKAQDANLDLNGACAASDAFFPFRDGVDVIAEQGIKAIIHPAGSMRDQEVFDA
                     ADEHGIAMVVTDVRHFRH"
BASE COUNT         2179 a         2544 c         2635 g         2177 t
ORIGIN      
        1 tattaaattg ggttatttcg aagcatcttc attaatattt tacctaaatc ttcatgccgg
       61 tggttaaacc taaactccgt ttctttgaga tgcagataaa acatctcttt ggaaatacca
      121 tgaaatttag ccaaacgccc cttagtataa ctccaaaaag attcaatacc attgatatgt
      181 tgctttcctc gagcaaactc attggaacca tgatggacac ggtaatgctt ctcatagccc
      241 atatcgacaa gaccgtcata tgctttccag ccgtcagtat tgatttcact gtcagcagat
      301 atgtgaccac gtatgacctt gattagtgag gctttcgaag cgtcgggaac gatttccgta
      361 tagaccacgc cattgcgttt cagtatgcca aatacgatgg ttttacctga cgctccgcga
      421 ccgcgcttac ccctgatacg tcgcgcacca aagtaagatt catctaattc gaccacaccg
      481 gacagtggtg agctttgttc gcacagagca gcaatcctgt gtctgatttt caggaaaata
      541 ggattgatac cgcgtacact aatgccggtc attttagcag tatcggaagc ggtcaaatca
      601 agagcgaaac agcggattat ttctctaaac ttttgctctg aaattttgct gaacttttga
      661 tacttatttt ttagtttcat attaggagct tatcaggttt tttgatgatt ttgcttccta
      721 agcccctatt ttattattag acggcggcaa ggcgttcgga cattctcacg gcgggttaaa
      781 ccgcacgctt cacaaaaaag cgaaagaagt tttgaccgcg ctcggacaca atgttcaaga
      841 aaccgtgatt gatgccggct atgatgttga ggcagaaatc gaaaaattcg tttggatgga
      901 tgccgtgatt tggcagatgc cgggctggtg gatgcacgag ccttggacag tgaaaaaata
      961 catagacgaa gtattaaccg ctggacacgg caaactctac caaagcgacg gcagacaccg
     1021 cgtcaatccg actgagggct acggcacagg cggcttgttg caaggcaaaa aacatatgct
     1081 ttcactgact tggaatgcgc cgattgaggc gtttacccgc gaaggcgatt tctttgaagg
     1141 caaaggcgtt gatgttttgt atatgcactt ccacaaagcc aacgagtttt tgggtatgac
     1201 ccgcctgccg acattcttat gtaacgatgt ggttaaaaat ccgcaagtgg aaaaatactt
     1261 ggcagattat caggcacact tggaaaaagt gttcggctaa ttaaaaatcc atcttcaaca
     1321 cggagatgga ttttgtttgt ttcgttgatt ttgtgtcagt ttcagatgta ggtgcttatt
     1381 cggacgggcc gtctgaaaat gtttgcccca atgcaaaaaa aatcactgca aaccttcata
     1441 aacggggttt gcagtgattt tttcaaatca aacagattga aaacctgcgc cgaattgttc
     1501 agacggcatt attttttcag ttcggacaga atgtcatcca cggttttctt cgcatctccg
     1561 aaacacatta cgctgttttc gttgaagaac agcgggtttt gtacacctgc gtagccggta
     1621 ttcatcgagc gtttgaagac gacgacttct tttgccttcc atacttccaa cacgggcata
     1681 cccgcaatcg ggctgttcgg gtcggtttgg gcggcaggat tgacggtatc gttcgcacca
     1741 atcaccaaga ccacatcggt ttcggggaag tcgtcgttga tttcgtccat ttccaacacg
     1801 atgtcgtagg ggactttggc ttcggcaagc agtacgttca tatgaccggg caggcggccg
     1861 gcgacggggt ggatgccgaa gcgcacttct gtgccgtttt tacgcaaaag ctcggtgatt
     1921 tcggcaacgg ggtattgcgc ttgtgcgact gccataccgt agcccggggt aatgatgaca
     1981 ctgtttgcgc ctttcagcat ttcggcaaca tcggcagctt tgacttctcg gtattcccct
     2041 atctcttggc tgccggaaga tgatgtgccg ctgtcgctgc cgaaaccgcc ggcgattacc
     2101 gagacaaacg accggttcat ggctttgcac ataatgtagg acagaatcgc gccgcttgag
     2161 ccgaccaacg cgccggtaac gatgagcagg tcgttggaga gcataaagcc tgccgctgcg
     2221 gccgcccagc cggagtagga gttgagcatg gacacgacca cgggcatatc tgcgccgccg
     2281 atggaggcga ccaagtgcca gccgaatgcg agggcgatca gagtcattat cagcaggatg
     2341 aagccgctgc cgtcaatgcc gacaaatacg agcagcaaca caaacgatac ggcaagtgcc
     2401 agtgcgttga gcttgtgttt ggcaggcagt tgcagcgggc tgctgctgat tttgccgttg
     2461 agtttgccga atgcgaccag cgagccggta aaggttaccg cgccgatgaa aatgcccaaa
     2521 tagacttcga ccagatggat ggtgtgcata tcgtgcgaaa cgttgcccgg ctcgatatag
     2581 ctgttgaagc cgaccaaaac cgccgctagg ccgacgaagc tgtgcagcag ggcaatcagt
     2641 tcgggcattt cggtcatttc cacctttttg gctttgtaga tgccgattgc cgcgccgatg
     2701 agcatggcga tgatgatcca gcccagtccg tgggtattgt cggaaaaaac agttacaaaa
     2761 agggcgaccg ccataccggc gataccggaa tagcagccct gtttggcggt ttcctgtttg
     2821 gacagccccg ccagtgagaa gatgaataaa attgcggcaa cgatatacgc cgctgttacg
     2881 agtcctgaag acatggaaat tctccgattt tcgatgattt gtttttaatg ccgtctgaac
     2941 tgttcagacg gcatctgttt caagcagccg cgacaaacag cccgacggtg caggcaaatc
     3001 cgcccgccca catcagcgag cgcaatgctg ctttgtctgc gatgtagcac cagataaagg
     3061 cgaggcggaa caggatgaac aggccggcaa gcgtgttgac ggttgcttgt ccggcattgc
     3121 cgattgcgtg tgccgtcaaa acggcggcgg caaacggtgc aaaggcttca aaaccgtttt
     3181 gctgcgcggc gtgggcacgg gcggctgtgc cttgcgtgtg cgccagaaaa tcgcgcggat
     3241 tgtggttgtc tttaaaccgg aatccgcccg cttttttggc atatgccgca caaaaaagcg
     3301 gcaataggca ggcaatcagg atgcaccaat aggcgaaagt catggcttac cctttcttaa
     3361 acatattcag catacgccgt gtaaccgcaa agccgccgaa gatgttgatg ctggcaatca
     3421 ggatggcgat gaaggcaagc agggtcacga aaccgttgcc ttggctgatt tgcagcagcg
     3481 cgccgacgac gatgatgccg gagatggcgt tggttaccga catcagcggt gtgtgcagcg
     3541 agtggctgac attccaaacg acgtagtagc cgatgacgca ggcgaggacg aacacgataa
     3601 agtggttcaa gaatgctgcg ggtgcgaccg cgccgaccca cagcaccaat acggcggcga
     3661 tgacggcagg cgcgagtttt ttccacaggg gaacgggttt cggctcgggc ttggcggcag
     3721 gcgcggcttt ttcagacggc gtttgctgcg gctgtgcgga aacttgaatc ggcggaggcg
     3781 ggaaggtgat ttcgccgtcg cgggtaacgg tcatattgcg gataatcacg tcttcaaaat
     3841 ccagcgtgat ttcgccgtct ttgttcgggc ttaacaactt ggtcaggttg accaggttgg
     3901 tggcgtaaag ctgggaagac tgtccggcaa ggcggtttgc catgtcggtg tagccgatga
     3961 ttttcacgcc gttgccggtt acggacaatt cgcccgggcg ggtgagttcg cagttgccgc
     4021 ccgtcgccgc cgccaaatcg acgatgacgg agccggattt catgctttcc accatttctt
     4081 tggtaatcag cttgggcgcg ggtttgcccg gaatggcggc ggtggtgatg atgatgtcca
     4141 cttctttcgc ctgctcggca aagagcttca tctcggctgc gataaattcg tcgctcatca
     4201 ctttggcgta gccgtctccg ctgccgcccg attcttgtgg gaagtcgagt ttcaggaact
     4261 tgccgcccat cgattcgatt tgttccgcca cttccaagcg ggtatcgaac gcgcgtacca
     4321 ctgcgccgag cgagtttgcc gtaccgatcg ccgccaaacc tgccacacct gcaccaatca
     4381 ccaaaacctg cgcgggcggc actttgctgg cggcggtaat ttgaccggtg aagaaacggc
     4441 cgaaggcgtt ggcggcttca attacggcgc ggtagccgct gatgtttgcc atcgaagaca
     4501 aagcgtccaa agcctgcgcg cgcgaaatgc ggggcaccat atccatcgcc agcgcgttca
     4561 ctttcttggc gcgcaaggct tcgaccaaag cctcgttttg gcgcggccac aggaagctga
     4621 cgatggtctg cccttctttg agcagcggca gctcgccttc ggacggcgcg ttgactttgt
     4681 aaagcaaagg gcatgcccaa accgccgctt tgtcggcaac ggtcgcgcct gctgcttggt
     4741 aagcggcatc gtccaaactt gccgccaaac ctgcaccgct ttcgacaacg gtttcaaagc
     4801 ccagtttgcc cagcagggcg acggtggcgg gcgtacaggc gacgcgggtt tcgccggata
     4861 atgactcgcg tgggataccg attttcatct ctgaatcctt tttcgggtag tttatatgta
     4921 tcgtgggtta aatttaaatc ggggcagggc ggagcaacgc cgtaccggtt taaaaccgat
     4981 tcacttcaaa tgttaatata ttttagataa tccccttata acgaattttc atcaggctgg
     5041 caatagttgc ggcattttcc cgtgttgtcc gacacatact gccgtttgcg tttgaagtca
     5101 ttttccgatt gcagtccctc ccgccgtaac attctttgcc gtttcactat ataatccgca
     5161 ttttttgagc cgtcgttatg ccgcacgccc tcgtcctcca atttccctcc gccgaagccc
     5221 tgccttccga cttcccctcc cgcctgcccg aacctgattg cgccgatgaa aagcgtatgc
     5281 gttttatcgt tgaagaaggg ttttctttaa gcggggcgga cgcggcgttg cttggcagcc
     5341 gtcaaatcga ccacgtcgtg ttgccggata tggattttgg cgaactcggt ttgattgtca
     5401 gcgatatgga ttcgacgctg attaccatcg aatgcgtcga tgaaattgcg gcaggcgtgg
     5461 gtttaaaaga caaggtagcg gaaattaccg agcgttcgat gcgcggagag ttggatttcg
     5521 agcagtcgtt gcgcagccgc gttgcgctgt tggcgggatt ggacgaacag attttggcgg
     5581 acgtttatga aaacgttttg aagctctcgc ccggtgcgga atttttgttg gacgaatgca
     5641 aaaggcacga tgtgaaattc ctgctggtgt ccggcggctt cacgtttttt accgaacgtc
     5701 tgcaacaacg cctcggcttc gaataccaac acgccaatgt tttggaaatt gaaaacggca
     5761 ggttgaccgg ccgtctgaaa ggcagaatca tcgacgcgca ggcaaaggcg gatttattga
     5821 gcgaataccg cagccgcctc ggattgcagc cacatcaggt gttggcgatg ggcgacggtg
     5881 cgaacgatat tccgatgctc aaagaagcgg gcataggcgt ggcttaccgt gccaaaccga
     5941 aagcgcgggc cgccgccgat gcctgtatca atttcggcgg tttggagcgt gtacgcggcc
     6001 tgttcggata ggcggatagg aaacggatgt cgtccgaaag gttttcagac ggcatttgaa
     6061 cggcaggaac gacagtggga cgcagaaaac tttggtttgc cctggcagca gcaggcgtta
     6121 tcggcggttt ggtcggcatt gtgctgacgg aactgatgca cttcatacag catacggcaa
     6181 cggttatggc gcggacggcg tgtacacttc gttccgcgaa ggcgtggcac aggcttccgg
     6241 tatgcggcgc gttgccgtgc tgacgctgtg cggcgcggtc gcaggcagcg gctggtggtt
     6301 gctgaaacgt ttcggcaagc cgcaaatcga aatcaaagcc gccttgaaac agccgttgca
     6361 ggggctgccg tttctgacga cggttttcca tgttctgctg caaatcataa cggtcggact
     6421 cggttcgccg ctcggacgcg aagtcgcgcc gcgagaaatg accgccgcgt ttgcttcggc
     6481 aggcggcaaa cgcttgggtt tggacgaagg cgaaatgcgc ctcttgattg cctgtgcgtc
     6541 cggcgcgggt ttggcggcgg tgtataacgt gccgctcgcc tccacgctgt ttatcctcga
     6601 agcgatgttg ggcgtgtgga cgcagcaggc cgccgccgcc gcgttgctga cttcggtcat
     6661 tgccaccgcc gtcgcgcgca tcggcttagg cgacgtgcag caatatcatc ccgccaacct
     6721 tgccgtaaac acctcattac tttggttttc cgccgtcatc ggcccgatac tgggcgcaac
     6781 ggcggtatat ttccggcgca gtgccgaaaa gttccccttc ctcaagcgcg acaatccgag
     6841 aattattcct ttggcgattg ctttgtttgc actcatcggc gcgattgccg tttggtttcc
     6901 cgaaattttg ggcaacggca aagcaggcaa ccaactgacc tttggcggat tgaccgactg
     6961 gcaacacagc cttgagctga ccgccgtcaa atggctggtt gtcttgatgg cgttggcggc
     7021 aggcgcatac ggcggactga ttacgccgtc tatgatgctc ggcagcacca tttcttttgc
     7081 agccgccgcc gcgtggaaca gcgttttccc cgaaatgccg tctgaaagcg cggcagtcgt
     7141 cggcgccgcc gttttcctcg gcgtttccct caatatgccg ctgaccgccg ccgtctttat
     7201 tttggaactc acctacgccc ccgccgcttt gttgatgcct ttatgtacgg gtatggcggg
     7261 cgcggtatgg acggcaagga aaatgggatg taaataaccg aaaggcaaaa tgccgtctga
     7321 aaccggtttt cagacggcat tcctttgggg attgtcaaca atatctgcaa aaacctactg
     7381 ccggaaagtg gaaaatagcg gataataccg ccccgacaac attaccgttt cccatcccaa
     7441 cgtcagaaaa aggaaatccc tatgccttcc atcaaacgcg ccctgatcag cctgtccgac
     7501 aagacgggcg cagtcgaatt tgcccaaacc ctgaccaagc tcggtgtcga aatcctctct
     7561 accggcggca cggcgaagct gcttgccgat gcgggcgttc ccgtgattga agttgccgac
     7621 tacaccggtt tccccgaaat gctcgacggc cgcgtgaaaa ccctgcatcc gaaaatccac
     7681 ggcggtattt tgggccggcg cgatttggac gaacacgtcg ccaagatgga agaacacggc
     7741 atcggcaaca tcgacctcgt gtgtgtcaac ctctacccct tcgccgccac catcgccaaa
     7801 ccaaactgca cgctggaaga cgcgattgaa aacatcgaca tcggcggccc gaccatggtg
     7861 cgctccgccg cgaaaaactg gaaacacgtc gccatcgtta ccgacacagc cgatttcccg
     7921 gccatcgccg ccgaactcga agccaacaat ggcgcattga gcgacaaaac ccgcttcaac
     7981 ctgtcgcgca aggcgttcag ccacaccgcc caatacgacg gcatgatttc caactacctg
     8041 acctcacttt cagacgacgt tttgagcgga gagcctgaaa tcggcgaatt tccaagccag
     8101 ttcaaccaaa gctggattaa agtgcaagac atgcgctatg gcgaaaaccc gcatcagcgc
     8161 gccgcgttct accgcgatat tgaccccgcc gcaggcagcc tttccgccta caaacaactg
     8221 caaggcaaag aattgtctta caacaacatc gccgatgccg atgccgcatg ggaagccgtc
     8281 aaatcctttg acgcgccagc ctgcgtgatc gtcaaacacg ccaatccgtg cggcgtcgcc
     8341 gttgcagccg atacattgac cgcctacaaa ctcgcctacg tcaccgacac caccagcgcg
     8401 ttcggcggca tcatcgcctt caaccgcgaa gtggacggcg aaaccgtcaa acagattacc
     8461 gacaaccagt ttatggaagt cttgatggcg ccgaagttta ccgccgaagc cctcgaaatc
     8521 gccgccgcca agaaaaacgt gcgcgtattg gaagtgccgc ttgaggcagg cgcaaaccgc
     8581 ttcgaactca aacgcgtcgg cggcggactg ttggtacaaa cccctgatat tcaccgcctc
     8641 aaccgcgccg atttgaaagt cgtctccaaa cgccaaccaa ccgagcaaga atggaacgac
     8701 ctgatgtttg tttggaacgt cgcaaaatac gtcaaatcca acgccatcgt cttcggcaaa
     8761 ggcggtcaaa cctacggcat cggcgcaggc caaatgagcc gcgtggacag cacccgcatc
     8821 gccgcccgca aagcgcaaga tgccaatctc gacctcaacg gcgcatgtgc cgcttccgat
     8881 gctttcttcc ccttccgcga cggcgtggac gtgattgccg agcagggcat caaagccatc
     8941 atccatccgg caggttcgat gcgcgatcag gaagtcttcg acgcagcgga cgaacacggc
     9001 atcgccatgg tcgtaaccga cgtgcgccac ttccgccatt aacgcagatg aacaaggcaa
     9061 tgccgtctga agggctttca gacggcattt tgcgctattt tgtgaaggta gggatgacgg
     9121 ttcgggtatt cctgacaggg tggattttca aggtgttgta tagggtgtag gaggattcgt
     9181 aaaaggtggg atgcagggtg tgcttcagcc cgctgcatca aaaatttttg gagaatcggc
     9241 gggagtcggc ggttttggtt tcggcgggga cggtggaaat gggtaacatt gacggaatcg
     9301 acggaagcgg tgggcttcag cccaccgctt gtatattgga atcaccgtat catagcgcca
     9361 cccgcgccca cccaaggcac acaaccgttg cgtagctcag ggagcggcag ggcaacccat
     9421 cgacacaacc ggacagttgc cggacaacac aaccgaatgc aaggcaggtt tatgatgagt
     9481 acccaatacc attacgcagg tatagtgaat taaatctaaa ccagtacagc gttgg
//
LOCUS       DAXIFD010000076         9325 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.076, whole genome shotgun sequence.
ACCESSION   DAXIFD010000076 DAXIFD010000000
VERSION     DAXIFD010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9325
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.076"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            168..1511
                     /locus_tag="ACFOCN_001226"
     CDS             168..1511
                     /locus_tag="ACFOCN_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HFC6970377.1"
                     /translation="MIKIKKGLNLPIAGRPEQVIYDGPAITEVALLGEEYAGMRPSMK
                     VKEGDAVKKGQVLFEDKKNPGVVFTAPASGKIAAIHRGEKRVLQSVVIAVEGNDEIEF
                     DRYAPDALAKLSGKEVRRNLIQSGLWTALRTRPFSKIPAVDAEPFAIFVNAMDTNPLA
                     ADPVVVIKEAAEDFRRGLLVLSRLTERKIHVCKAAGADVPSENAANIETHEFGGPHPA
                     GLSGTHIHFIEPVGANKTVWTINYQDVIAIGRLFATGRLNTGRVVALGGSQVNKPRLL
                     RTVLGAKVSQITAGELVDADNRVISGSVLNGAIAQGAHDYLGRYHNQISVIEEGRSKE
                     LLGWVAPQPDKYSITRTTLGHFLKNKLFKFNTAVNGGDRAMVPIGTYERVMPLDILPT
                     LLLRDLIVGDTDSAQALGCLELDEEDLALCSFVCPGKYEYGPLLRKVLETIEKEG"
     gene            1514..2746
                     /locus_tag="ACFOCN_001227"
     CDS             1514..2746
                     /locus_tag="ACFOCN_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HFC6970378.1"
                     /translation="MGLKHFLEKIEPHFLPGGKHEKWYALYEAAATIFYTSGAVTRKA
                     AHVRDALDSKRMMILVWLALFPAMFYGMYNVGAQAFGALTPDLLQQSIANDWHYTLAD
                     ALGINMSSEAGVLGKMLFGAIYFLPIYATVFAVGGFWEVLFATVRKHEINEGFFVTSI
                     LFALIVPPTLPLWQAALGISFGVVVAKEVFGGTGKNFMNPALAGRAFLFFAYPANLSG
                     DAVWTAVDGYSGATALAQWAAHGADGLKNAVTGQTITWMDAFIGKLPGSIGEVSTLAL
                     LIGGAFIVFARIASWRIIAGVMIGMIAMSSLFNFIGSDTNAMFAMPWYWHLVVGGFAI
                     GMLFMATDPVSASFTNVGKWWYGALIGVMCVLIRVVNPAYPEGMMLAILFANLFAPIF
                     DYFVAQANIKRRKARSNG"
     gene            2739..3515
                     /locus_tag="ACFOCN_001228"
     CDS             2739..3515
                     /locus_tag="ACFOCN_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HFC6970379.1"
                     /translation="MAKKFDKDSFSGTLIVVLAVSLICSVIVAGAVVGLKPIQEKQKL
                     QDKQGYILSVAGLMDKDTDIGKTFAERIEQRVVDLATGEYVADAPKDFSARIAGKDPA
                     QSIRIKPEDDLAGIKSRAKYTEVYLVKGEDGKIGQIILPMHGNGLWSVMYGFVAIQPD
                     GNTINGITYYEQGETPGLGGEIGNPLWQQKFVGKKLFDGQGKLALHVGKGAGSDKEHG
                     VDALSGASLTSKGVQGSFAYWFGENGYIPYLNKLKSAGAQ"
     gene            3515..4141
                     /locus_tag="ACFOCN_001229"
     CDS             3515..4141
                     /locus_tag="ACFOCN_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HFC6970380.1"
                     /translation="MADMKRLKHLMFSPFIDNNPIALQVLGICSALAVTTKLQTAIVM
                     GISVALVTGFSSFFISLVRNYIPNSIRIIVQMAIIASLVTLVDQLLQAFAYELSKQLS
                     VFVGLIITNCIVMGRAEAFAMKEPPLESLIDGIGNGAGYGIMLLVVATVRELIGSGKL
                     LGYTVFQTVQDGGWYQTNGLFLLAPSAFFIIGFLIWGLRTWKPEQAEE"
     gene            4145..4738
                     /gene="nqrE"
                     /locus_tag="ACFOCN_001230"
     CDS             4145..4738
                     /gene="nqrE"
                     /locus_tag="ACFOCN_001230"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HFC6970381.1"
                     /translation="MEHYLSLFIKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGVA
                     VIFVLGLSVPVNQLVYSLLKDGAIVEGVDLTFLKFITFIGVIAALVQILEMFLDKFVP
                     ALYNALGIYLPLITVNCAIFGAVSFMAQREYNFGESVVYGFGAGLGWMLAIVALAGIT
                     EKMKYSDAPKGLKGLGITFIAAGLMAMAFMSFSGIQL"
     gene            4752..5969
                     /gene="nqrF"
                     /locus_tag="ACFOCN_001231"
     CDS             4752..5969
                     /gene="nqrF"
                     /locus_tag="ACFOCN_001231"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HFC6970382.1"
                     /translation="MEIILGIVMFTVIVLVLALMILFAKSKLVSEGDITIKVNGEKEL
                     TMPAGGKLLGALANEGIFIPSACGGGGSCGQCRVVVKSGGGDILPTELSHISKREARE
                     GCRLSCQVNVKTDMDIEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFR
                     AGGYIQIEAPPHTVAYKDFDIPEEYHEDWDKYNLWQYVSKVDEPILRAYSMASYPEEK
                     GIIMLNVRIATPPPRVPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAEMVFI
                     GGGAGMAPMRSHIFDQLKRLNSKRKITFWYGARSKREMFYVEDFDQLAAEFPNFTWHV
                     ALSDPLPEDNWDGYTGFIHNVVYENHLKNHEAPEDCEFYMCGPPIMNQSVIKMLKDLG
                     VEDENILLDDFGG"
     gene            6121..7176
                     /locus_tag="ACFOCN_001232"
     CDS             6121..7176
                     /locus_tag="ACFOCN_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6970383.1"
                     /translation="MPSETRLPNFIRVLIFALGFIFLNACSEQTAQTVTLQGETMGTT
                     YTVKYLSNNRDKLPSPAEIQKRIDDALKEVNRQMSTYQPDSEISRFNQHTAGKPLRIS
                     SDFAHVTAEAVRLNRLTHGALDVTVGPLVNLWGFGPDKSVTREPSPEQIKQAASYTGI
                     DKIILKQGKDYASLSKTHPKAYLDLSSIAKGFGVDKVAGELEKYGIQNYLVEIGGELH
                     GKGKNARGEPWRIGIEQPNIVQGGNTQIIVPLNNRSLATSGDYRIFHVDKSGKRLSHI
                     INPNNKRPISHNLASISVVADSAMTADGLSTGLFVLGETEALKLAEREKLAVFLIVRD
                     TGGYRTAMSSEFEKLLR"
     gene            7202..7417
                     /gene="nqrM"
                     /locus_tag="ACFOCN_001233"
     CDS             7202..7417
                     /gene="nqrM"
                     /locus_tag="ACFOCN_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HFC6970384.1"
                     /translation="MKTLLLTFGIFLTVIIGMAVGYIFSKRTIKGSCGGITALGMKKM
                     CDCDTPCDTLQKKLDEEKQAGGIRVDR"
     gene            complement(7541..8119)
                     /gene="grpE"
                     /locus_tag="ACFOCN_001234"
     CDS             complement(7541..8119)
                     /gene="grpE"
                     /locus_tag="ACFOCN_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HFC6970385.1"
                     /translation="MSEQTQQQNSEEAVENVEAVETVETVGNADGVQEQAAAEPAYED
                     LQARIAELEAQLKDEQLRALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEM
                     ALLDQSGNFDALKMGVQMTLNELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQ
                     EPNTVVGVMKKGYTLSDRVLRPAMVTVAQKEA"
     gene            8303..9121
                     /gene="cysE"
                     /locus_tag="ACFOCN_001235"
     CDS             8303..9121
                     /gene="cysE"
                     /locus_tag="ACFOCN_001235"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HFC6970386.1"
                     /translation="MKKDHLNTTGFDLWHTIREETAAAVSAEPMLASFLHQTVLRHES
                     LGSVLAYHLSSKLGSPIMDVRALFEIYQQALGSDTQIGKCVEADLKAIYERDPACDEY
                     SLPLLYFKGFHAIQAHRINHRLYLDGRKTLAYFLQNRMSEVFGVDIHPAARFGYGLML
                     DHATGFVAGETAVLGNNISILHGVTLGGSGKEGGDRHPKIGDGVMIGANASILGNIRI
                     GSNAKIGAGSVVVSDVPPSITVVGVPAKPVARSLKTPSADMDQNIQFTEIDFMI"
BASE COUNT         2252 a         2624 c         2314 g         2135 t
ORIGIN      
        1 taaaaacggc ttccgcaagg aaaaaagcag caaatctgac aaacaggtac aattcctgat
       61 agaatctaac actttgctac attaatttat tcaatgcttt tgatgccacg cgacacggta
      121 tcaaaacacg ccgtttttac cttaaccatc acaagtaatg caaatatatg attaaaatca
      181 aaaaaggtct aaacctgccc atcgcgggca gaccggagca agtcatttat gacggcccgg
      241 ccattaccga agtcgcgttg cttggcgaag aatatgccgg tatgcgcccc tcgatgaaag
      301 tcaaggaagg cgatgccgtc aaaaaaggcc aagtgctgtt tgaagacaaa aagaatccgg
      361 gcgtggtgtt taccgcgccg gcttcaggca aaatcgccgc catccatcgc ggcgaaaagc
      421 gcgtacttca gtcggtcgtg attgccgttg aaggcaacga cgaaatcgaa ttcgaccgct
      481 acgcgcccga tgccttggca aaattgagcg gcaaagaagt gcgccgcaat ctgattcaat
      541 ccggtttgtg gactgcgctg cgtacccgtc cgttcagcaa aatccctgcc gtcgatgccg
      601 agccgttcgc catcttcgtc aatgcgatgg acaccaatcc gctggcggca gaccctgtgg
      661 ttgtgatcaa agaagccgcc gaggatttca gacgaggttt gctggtattg agccgtttga
      721 ccgagcgtaa aatccatgtg tgtaaagcag caggcgcaga cgtgccgtct gaaaacgccg
      781 ccaacatcga aacacatgaa ttcggcggcc cgcatccggc cggtttgagt ggcacgcaca
      841 ttcatttcat tgagccggtc ggtgcaaaca aaaccgtttg gaccatcaat tatcaagatg
      901 taattgccat cggacgtttg tttgcaacag gccgtctgaa caccgggcgc gtggttgcct
      961 tgggtggttc tcaagtcaac aaaccacgcc tcttgcgtac cgttttgggt gcgaaagtat
     1021 cgcaaattac tgcgggcgaa ttggttgacg cagacaaccg cgtgatttcc ggttcggtat
     1081 tgaacggcgc gattgcacaa ggcgcgcacg attatttggg acgctaccac aatcagattt
     1141 ccgttatcga agaaggccgc agcaaagagc tgctcggctg ggttgcgccg cagccggaca
     1201 aatactccat cacgcgtaca accctcggcc atttcctgaa aaacaaactc ttcaagttca
     1261 acacagccgt caacggcggc gaccgcgcca tggtgccgat tggtacttac gagcgcgtga
     1321 tgcccttgga tatcctgccc accctgcttt tgcgcgattt aatcgtcggc gataccgaca
     1381 gcgcgcaggc attgggttgc ttggaattgg acgaagaaga cctcgctttg tgcagcttcg
     1441 tctgcccggg caaatacgaa tacggcccgc tgttgcgcaa agtgctggaa accattgaga
     1501 aggaaggctg attatgggct tgaaacattt tctggaaaaa atcgaaccgc acttcctgcc
     1561 gggcggcaaa catgaaaaat ggtatgccct ctacgaagcg gcggcgacga ttttctacac
     1621 atccggtgcg gtaacgcgca aagcggcaca cgtccgcgac gcgctcgact ccaagcgcat
     1681 gatgattttg gtgtggctgg ctttgttccc cgccatgttt tacggcatgt acaacgtcgg
     1741 cgcacaggca ttcggtgcct taacgcccga tttgctgcaa caaagcatcg ccaacgactg
     1801 gcattacacc cttgccgacg ctttgggcat caatatgtcg tctgaagcgg gcgtgttggg
     1861 caaaatgctg ttcggcgcga tttacttcct gccgatttac gcgaccgtat ttgccgtcgg
     1921 cggtttctgg gaagtcttgt tcgccaccgt acgcaaacac gaaatcaacg aaggtttctt
     1981 tgttacctcg attctgtttg ccttaatcgt tccgcccacg ctgccgctgt ggcaggcggc
     2041 tttgggtatt tctttcggcg ttgtggttgc gaaagaagta ttcggcggta cgggtaaaaa
     2101 ctttatgaac cctgcgctgg caggccgcgc cttcctgttc ttcgcctacc ccgccaactt
     2161 gagcggcgat gcggtttgga cggcggttga cggctattcc ggcgcaaccg cgctggcgca
     2221 atgggcggca cacggtgcag acggcctgaa aaacgccgta accggtcaaa ccatcacttg
     2281 gatggacgcg tttatcggca aactgcccgg ctccatcggc gaagtctcca ctttggcact
     2341 cttaatcggc ggcgcgttta tcgtgtttgc ccgcatcgct tcttggcgca ttattgccgg
     2401 cgtgatgatc ggtatgattg cgatgtcttc gctgttcaac ttcatcggtt cggacaccaa
     2461 cgctatgttt gccatgcctt ggtactggca tttggtcgtc ggcggcttcg ccatcggtat
     2521 gctgtttatg gcgaccgacc ctgtttccgc ttcctttacc aatgtcggca aatggtggta
     2581 cggcgcgctg atcggcgtga tgtgcgtgtt gatccgcgtg gtcaatccgg cttaccccga
     2641 aggtatgatg ttggcgattc tgtttgccaa cctgtttgcc ccgattttcg actatttcgt
     2701 cgcacaagcg aacatcaaac gcagaaaggc gcgcagcaat ggctaagaaa ttcgataaag
     2761 acagcttcag cggcacgctg attgtcgtgt tggcggtcag cctgatttgc tcggtcatcg
     2821 ttgccggtgc ggtcgtcggc ttgaaaccca tccaagagaa acaaaaactc caagacaaac
     2881 aaggctatat cttgagcgta gccggtttga tggataagga caccgacatc ggcaaaacct
     2941 ttgccgagcg tatcgagcaa cgtgttgtcg atttggcgac cggcgaatac gtcgccgatg
     3001 cgcctaaaga cttcagcgcg cgcatcgcag gcaaagaccc tgcccaaagc atccgcatca
     3061 aacccgaaga cgatttggca ggcatcaaaa gccgtgccaa atacaccgag gtttatttgg
     3121 taaaaggcga agacggcaaa atcgggcaaa tcatcctgcc tatgcacggt aacggtttgt
     3181 ggtcggtcat gtacggcttt gtcgccatcc agcccgacgg caacaccatc aacggcatta
     3241 cctactacga acaaggcgaa accccgggct tgggcggcga aatcggcaat ccgttgtggc
     3301 agcaaaaatt cgtcggcaaa aaactgtttg acggacaagg caaactcgcc ctgcacgtcg
     3361 gcaaaggcgc gggttcggac aaagaacacg gcgtagatgc cctctccggc gcatcgctga
     3421 catccaaagg cgtgcaaggt tcgttcgcct actggttcgg cgaaaacggc tatatcccct
     3481 acctgaacaa attgaaatca gcaggagcgc aataatggct gatatgaaac gcttgaaaca
     3541 tttgatgttt tcacccttta tcgacaacaa cccgattgcc ttgcaggttt tgggtatttg
     3601 ttcggctttg gcggttacca ccaaacttca gacggccatc gtgatgggta tttccgtagc
     3661 tttggtaacc ggtttttcca gcttcttcat ttcgctggta cgcaactaca tccccaacag
     3721 catccgtatt atcgtgcaaa tggcgattat cgcgtcgctg gttacgctgg tcgaccaact
     3781 cttgcaggca tttgcctacg aattgtccaa acagctttcc gtattcgtcg gtctgattat
     3841 taccaactgt atcgtgatgg gccgcgccga agcatttgcg atgaaagagc cgccgctgga
     3901 aagcctgatc gacggcatcg gcaacggcgc gggctacggg ataatgctgc ttgtcgtcgc
     3961 caccgtccgc gaactgattg gctcgggcaa actcttgggc tacaccgttt tccaaaccgt
     4021 gcaggacggc ggctggtatc agaccaacgg cttgttcctg ctcgccccca gcgcgttctt
     4081 catcatcggc tttttgattt ggggactgcg tacctggaaa cccgaacagg cggaggaata
     4141 agctatggaa cactatttga gcctcttcat caaatccgtc ttcattgaaa atatggcact
     4201 atccttcttt ttgggtatgt gcacgttttt ggcggtatcc aaaaaagtat ccaccgcatt
     4261 cggtttgggt gtggcggtaa ttttcgtact cgggctgtcc gtccctgtca accaactcgt
     4321 ttactcgctg ctcaaagacg gcgcgattgt cgaaggcgtg gatttgacct ttttgaaatt
     4381 catcaccttc atcggcgtga ttgccgcttt ggtgcagatt ttggaaatgt tcttggataa
     4441 attcgtcccc gccctctata acgcattggg catctacctg ccgctgatta ccgtgaactg
     4501 cgcgattttc ggcgccgtat cgtttatggc gcaacgcgaa tacaacttcg gcgagtccgt
     4561 tgtatacggc ttcggcgcgg gcttgggctg gatgttggcg attgtcgctt tggcgggcat
     4621 taccgaaaaa atgaaatatt cggacgctcc caaaggcctc aaaggcttgg gcattacctt
     4681 tatcgccgcc ggcctgatgg cgatggcgtt tatgtcgttc tctggcatcc agttataaga
     4741 aagggatcgg tatggagatt attttaggta tcgtgatgtt taccgtcatc gttttggttt
     4801 tggcactgat gattctgttt gccaaatcca aactggtcag cgaaggcgac atcaccatca
     4861 aagtcaacgg cgaaaaagag ctgacgatgc ccgccggcgg caaactcttg ggcgcgcttg
     4921 ccaacgaagg catctttatc ccctccgcct gcggcggggg cggttcgtgc ggacaatgcc
     4981 gcgtcgtcgt aaaaagcggc ggcggcgaca tcctgccgac cgagctgtcc cacatcagca
     5041 aacgcgaagc acgcgaaggc tgccgtctgt cgtgccaagt caacgtcaaa accgacatgg
     5101 acatcgaagt ccccgaagaa gtgttcggcg tgaaaaaatg ggaatgcacc gtcatctcca
     5161 acgataacaa agccacgttc attaaagaac tcaagcttgc cattcccgaa ggcgaagaag
     5221 tccccttccg cgccggcggc tacattcaaa ttgaagcccc gccgcacacc gttgcctaca
     5281 aagacttcga cattcccgag gaataccacg aagactggga caaatacaat ttgtggcaat
     5341 acgtttccaa agtggacgag ccgattttgc gtgcctactc tatggcttcg tatcctgaag
     5401 aaaaaggcat cattatgctg aacgtgcgta tcgccacgcc gcccccgcgc gtacctgatg
     5461 cgcctccggg acaaatgtcg tcctacatct ggtcgctcaa acccggcgac aaagttacga
     5521 tttccggccc gttcggcgaa tttttcgcca aagacaccga tgccgaaatg gtatttatcg
     5581 gcggcggtgc gggtatggct ccgatgcgtt cccacatttt cgaccagttg aaacgtttga
     5641 actccaaacg taagattacc ttctggtacg gcgcacgttc caaacgcgaa atgttctatg
     5701 tcgaagactt cgaccaactc gcagcagaat tcccgaactt cacatggcac gtcgccctgt
     5761 ccgacccatt gcctgaagac aactgggacg gctacacagg cttcattcac aacgtggttt
     5821 acgaaaacca tctgaaaaac cacgaagcgc cggaagactg cgaattttat atgtgtggtc
     5881 ctccgatcat gaaccagtcc gtcatcaaaa tgcttaaaga cttaggcgtg gaagacgaaa
     5941 acatcctctt ggacgatttc ggcggttaaa tattcggctt caaacacaaa aggaagaaac
     6001 ctcggtttct tcctttttct atccgatgcc gcccgaaccc ccttcagacg gcatcggcat
     6061 agaaacatat cggccgtttt gcgatataat tcaaaccatt tgccaaaacc gtcaaacact
     6121 atgccgtctg aaacacgcct gccgaacttt atccgcgtct tgatatttgc cctgggtttc
     6181 atcttcctga acgcctgttc ggaacaaacc gcgcaaaccg ttaccctgca aggcgaaacg
     6241 atgggcacga cctataccgt caaatacctt tcaaataatc gggacaaact cccctcacct
     6301 gccgaaatac aaaagcgcat cgatgacgcg cttaaagaag tcaaccggca gatgtccacc
     6361 tatcagcccg actccgaaat cagccggttc aaccaacaca cagccggcaa gcccctccgc
     6421 atttcaagcg acttcgcaca cgttactgcc gaagccgtcc gcctgaaccg cctgacacac
     6481 ggcgcgctgg acgtaaccgt cggccccttg gtcaaccttt ggggattcgg ccccgacaaa
     6541 tccgttaccc gtgaaccgtc gccggaacaa atcaaacaag cagcatctta tacgggcata
     6601 gacaaaatca ttttgaaaca aggcaaagat tacgcttcct tgagcaaaac ccaccccaag
     6661 gcctatttgg atttatcttc gattgccaaa ggcttcggcg ttgataaagt tgcgggcgaa
     6721 ctggaaaaat acggcattca aaattatctg gtcgaaatcg gcggcgagtt gcacggtaaa
     6781 ggcaaaaacg cgcgcggcga accttggcgc atcggcatcg aacagcccaa catcgtccaa
     6841 ggcggcaata cgcagattat cgtcccgctg aacaaccgtt cgcttgccac ttccggcgat
     6901 taccgtattt tccacgtcga taaaagcggc aaacgcctct cccatatcat taatccgaac
     6961 aacaaacgac ccatcagcca caacctcgcc tccatcagcg tggtcgcaga cagtgcgatg
     7021 acggcggacg gcttgtccac aggattattc gtattgggcg aaaccgaagc cttaaagctg
     7081 gcagagcgcg aaaaactcgc tgttttcctg attgtcaggg atacaggcgg ctaccgcacc
     7141 gccatgtctt ccgaatttga aaaactgctc cgctaaacat acaaaccgat taggaaacac
     7201 catgaaaacc ctgctcctca ccttcggcat cttcctgacc gtcatcatcg gtatggcggt
     7261 cggctatatc ttctccaaac gcaccatcaa aggcagttgc ggcggcatta ccgccttggg
     7321 tatgaaaaaa atgtgcgact gcgacacgcc ttgcgacacc ctgcaaaaga aactggatga
     7381 agaaaaacag gcaggcggca tacgggttga ccgttaacac cgaaacaaaa tgccgtctga
     7441 agcccgacag gcgggttcag acggcattgc cgctttactt cgatcggttt atacgcaaaa
     7501 cgcgcttcag gaaataaatc agattattcc ccagacgcct tcaggcttcc ttctgtgcca
     7561 ccgtaaccat agccgggcgc aacacgcggt cggacagcgt ataacccttc ttcatcacgc
     7621 ccaccacggt attgggttcc tgttcgcttg ccaccgcctg catcgcctga tggatattcg
     7681 gatcgagctt atcgcccgct ttaggattga tttccttgat ttgcgtagca tcaaatgctt
     7741 tctgcaactc gttcaaagtc atctgcacgc ccattttcag cgcatcgaaa ttgccgctct
     7801 gatccaaaag cgccatttcc agataatcct tgaccggcag catttccacg gcaaacttct
     7861 gtccggcgaa cttgtgcgta tccgcaattt cctgctggtg gcggcggcgc aggttttgct
     7921 cgtttgccaa agcgcgcagc tgctcgtctt tcaactgcgc ttccagctcg gcaatccgcg
     7981 cctgcaaatc ctcataagcc ggctctgcgg cagcctgttc ctgcacaccg tccgcatttc
     8041 ctactgtctc gacggtttcc accgcctcca cattttcaac cgcttcttca ctgttttgct
     8101 gctgtgtctg ttcgctcata tcgtatccct taaaacaaat tggaaatcaa aatccagtta
     8161 ttacccgcgc aagataagga cattttcaag aaacttcaag caaaagcaga gaatttcaaa
     8221 ttcattttca aatcccctac cgaaaaaata atatagacgg taagatactg ccgaccatat
     8281 cgattttcaa acgtcatcac tcatgaaaaa agaccattta aacacaaccg gtttcgacct
     8341 ctggcacacc atccgcgaag aaaccgcggc cgcggtctcc gccgaaccga tgctggcaag
     8401 ttttttgcac caaaccgtgt tgcgccacga gtccctcggc tccgtccttg cctaccacct
     8461 ttccagcaaa ctcggcagcc cgattatgga cgtgcgcgcg ctgtttgaaa tctaccagca
     8521 ggcgttgggc agcgacaccc aaatcggcaa atgcgtcgaa gcagacttaa aagccatcta
     8581 cgaacgcgat cccgcctgcg acgaatattc gctgccgctt ttatatttca aaggcttcca
     8641 cgcgattcag gcacaccgca tcaaccatcg gctgtatctc gacgggcgca aaacgctggc
     8701 gtatttcctg caaaaccgta tgtccgaagt attcggcgtg gacatccatc ccgccgcccg
     8761 tttcggatac gggctgatgc tcgaccacgc caccggcttt gttgccggcg aaaccgccgt
     8821 gttgggcaac aatatttcga ttttgcacgg cgtaacgctc ggcggttcgg gcaaagaagg
     8881 cggcgaccgc caccctaaaa tcggcgacgg cgtgatgatc ggcgcaaacg cctcgatatt
     8941 gggcaatatc cgcatcggca gcaatgccaa aatcggggcg ggcagcgtcg tggtttcaga
     9001 cgtgccgccg tccatcacgg ttgtcggcgt acccgccaaa cccgtggcgc gatcgctcaa
     9061 aacaccgtcg gcggatatgg atcaaaatat ccagtttacc gaaatcgact ttatgatttg
     9121 aatatccgca ccaatgccgt ctgaaacgcc aaacgggctt cagacgacat tgcccgcttc
     9181 aagcctgcgc cttgatatgc cgccgatgtc ggcacttgcc agtcggacaa aatgcctttt
     9241 attcaataca cccgattccc acgcaaccgg aaatatagtg gattaacaaa aatcaggaca
     9301 aggcgacgaa gccgcagaca gtacg
//
LOCUS       DAXIFD010000077         9323 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.077, whole genome shotgun sequence.
ACCESSION   DAXIFD010000077 DAXIFD010000000
VERSION     DAXIFD010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9323
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.077"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..101
                     /locus_tag="ACFOCN_001236"
     CDS             <1..101
                     /locus_tag="ACFOCN_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HFC6970387.1"
                     /translation="TFACALGALVASEHGATPDISAERIGRFMNPV"
     gene            complement(161..718)
                     /locus_tag="ACFOCN_001237"
     CDS             complement(161..718)
                     /locus_tag="ACFOCN_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6970388.1"
                     /translation="MDALKLLTNRRSSKKLKPPAPDAAELEQIFQAATQVPDHGNMRP
                     FRFTVIQGEVGLQRFRDVLKQTVAELNFGDDAMKKAEKVGNMAPMVIGVTFAPNRDVP
                     KPKPEWEQMLTAGCAAYALQLAATAQGFDNVWITGMWVNSPLLREAFGCADKDKIIGL
                     MMVGTPTEEVHKPKNTDLEAFVSHW"
     gene            complement(794..2428)
                     /locus_tag="ACFOCN_001238"
     CDS             complement(794..2428)
                     /locus_tag="ACFOCN_001238"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6970389.1"
                     /translation="MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGT
                     GADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKS
                     MLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAA
                     VSFLCALGIAMLQYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLD
                     MAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSC
                     GTSTAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKV
                     PNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYT
                     EAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYV
                     SDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENE
                     YSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR"
     gene            complement(2498..2831)
                     /locus_tag="ACFOCN_001239"
                     /pseudo
     CDS             complement(2498..2831)
                     /locus_tag="ACFOCN_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221902.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2831..3937)
                     /gene="serC"
                     /locus_tag="ACFOCN_001240"
     CDS             complement(2831..3937)
                     /gene="serC"
                     /locus_tag="ACFOCN_001240"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HFC6970390.1"
                     /translation="MSLYPIYNFSAGPAVLPEAVLETARQEMLDYNGTGFPVMAMSHR
                     SEMFLSILHHAEQDLRQLLKVPDNYKILFLQGGATTQFNMAAMNLAHGFRTADAVVTG
                     NWSRIAYEQMSRLTDTEIRLAAHGGEQFDYLDLPPVETWDVAPDSAFVHFAVNETVNG
                     LQYREVPRLSEGMPPLVCDMSSEILSREFDVADYGLIYAGAQKNIGPAGATVVIIRED
                     LLERCPNDIPDVFNYRSHLNREGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRL
                     KAQTLYETIDGSGGFYINRIRPNARSKMNVVFQTGDEELDRRFVLEAELQGLCLLKGY
                     KTVGGMRASIYNAMPLEGVRALADFMRDFQRRYG"
     gene            4302..4733
                     /gene="rimP"
                     /locus_tag="ACFOCN_001241"
     CDS             4302..4733
                     /gene="rimP"
                     /locus_tag="ACFOCN_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HFC6970391.1"
                     /translation="MDIQTILEKTLPGLGYELVDFELTAQGTLRVFIDKESGITVEDC
                     ATVSNHLSRVFMVEDIDYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQK
                     NFIGKIEGCENDTVTVSFDGKTVQIELGNIDKARLRPEFKF"
     gene            4761..6263
                     /gene="nusA"
                     /locus_tag="ACFOCN_001242"
     CDS             4761..6263
                     /gene="nusA"
                     /locus_tag="ACFOCN_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HFC6970392.1"
                     /translation="MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHM
                     DVRVQINRDTGEYQTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQL
                     PNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVV
                     AGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYA
                     NEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSG
                     ERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVR
                     LASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEEV
                     AYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRNLEGIDADM
                     LRSLAEAGITTRDDLAELAVDELIEITGVNEETAKAVILTAREHWFTEDK"
     gene            6275..9163
                     /gene="infB"
                     /locus_tag="ACFOCN_001243"
     CDS             6275..9163
                     /gene="infB"
                     /locus_tag="ACFOCN_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HFC6970393.1"
                     /translation="MSNTTVEQFAAELKRPVEDLLKQLKEAGVSKNSGSDSLTLDDKQ
                     LLNAYLTKKNGSNGGTISIRRTKTEVSTVDGVKVETRKRGRTVNIPSAEELAAQVKAA
                     QTQAAPVRPEQTAEDAAKARAEAAARAEARAKAEAEAAKLKAAKAGNKAKPAAQKPTE
                     AKAETAPVAAETKPAEESKAEKAQADKMPSKKPAEPKEKAAKPKHERNGKGKDAKKPA
                     KPAAPAVPQPVVSAEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAMKQQAEQQ
                     AKTAQEAKTGRQRPAKPAEKPQAAAPAVENKPVNPAKAKKEDRRNRDDEGQGRNAKGK
                     GGKGGRDRNNARNGDDERVRGSKKGKKLKLEPNQHAFQAPTEPVVHEVLVPETITVAD
                     LAHKMAVKGVEVVKALMKMGMMVTINQSIDQDTALIVVEELGHIGKPAAADDPEAFLD
                     EGAEAVEAEALPRPPVVTVMGHVDHGKTSLLDYIRRTKVVQGEAGGITQHIGAYHVET
                     PRGVITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTIEAIAHAKAAGVPM
                     VVAVNKIDKEAANPERIRQELTAHEVVPDEWGGDVQFIDVSAKKGLHIDALLEAVLLE
                     AEVLELTAPVDAPAKGIIVEARLDKGRGAVATLLVQSGTLKKGDMLLAGTAFGKIRAM
                     VDENGKSITEAGPSIPVEILGLSDVPNAGEDAMVLADEKKAREIALFRQGKYRDVRLA
                     KQQAAKLENMFNNMGETQAQSLSVIIKADVQGSYEALAGSLKKLSTDEVKVNVLHSGV
                     GGITESDVNLAIASGAFIIGFNVRADASSRKLAENENVEIRYYNIIYDAIDDVKAAMS
                     GMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVVKRDSHVRLIRNNVVIHTGE
                     LASLKRYKDDVKEVRMGFECGLMLKGYNEIMEGDQLECFDIVEVARSL"
BASE COUNT         2489 a         2687 c         2370 g         1777 t
ORIGIN      
        1 agacctttgc ctgcgcactt ggtgcgctgg tcgcctccga acatggcgcg acacccgaca
       61 tttccgccga acgcatcggg cgtttcatga atccggttta aaacgcatgg aaaaatgccg
      121 tctgaaagcc tttcagacgg cattgtgctt gagattccgt ttaccaatgg ctgacaaacg
      181 cttccaaatc ggtattcttg ggcttatgca cttcctctgt cggcgtgccg accatcatca
      241 gcccgatgat tttatcctta tccgcacaac cgaaagcctc ccgcaacaag gggctgttga
      301 cccacatccc cgtaatccag acattgtcga atccctgagc cgttgccgcc agttgcagcg
      361 catacgccgc acaacccgcc gtcagcatct gctcccattc cggtttcggc ttaggcacat
      421 cacgattcgg cgcaaacgtt accccgatga ccatcggcgc catattgccc actttttccg
      481 cctttttcat cgcatcgtcg ccgaaattca attcggcaac cgtttgcttt aacacatcgc
      541 gaaaacgttg caatcctacc tcgccttgaa tcacggtaaa acggaagggg cgcatattgc
      601 cgtgatcggg aacttgggtt gccgcctgaa atatttgttc caactccgcc gcatcggggg
      661 cggggggctt cagctttttg gaagatcggc ggttcgtcaa taattttaaa gcatccatat
      721 cgttatactc cggtcatcgg tcgggtgttc ggacacatat gccgtccgaa ggcttcagac
      781 ggcatatccg gcatcagcgc ggacggcggc aggctgccaa tatatccatt tccttccgat
      841 aggtttggct attggaaatg tccatcagcc ccaataccgt gctgaaatag tggtcgtgcg
      901 aatattcgtt ttccgccgct ttttgtttga ggcattggaa atctatgccc ccgtgttggc
      961 ggaaggcttt ggaaaaccac ataaccatcg ggatatgcgt ctgcccggaa ggcgcgatgg
     1021 cgtaaggcgc ggcgtgcagg tacatcccgt tttcgcccaa actttcgccg tggtcggaaa
     1081 cataatgcac cacgctttcc aaatcgtcgc ggttttcaag tttgcggata accttgtcga
     1141 taaactggtc cacatacaaa accgtattgt cgtaagtgtt gaccagcgtg gcgcgggtgc
     1201 atttgttgat ttcgttggtg tcgcaggtcg gcgtgaattt gcgttcggct tcggtatagc
     1261 gttcgtaata cgtcggcccg tggctgccga tggtatgcag gattaaaacc gcgtctttat
     1321 cgtttttgtt gaggacttcg tcgaacttag tcagcaggat attgtcgaga cactcgccgt
     1381 tgcggcagta ttcgggcagg ttgagcgagg taacgtcggt attcggcact ttgccgcaca
     1441 cgcccttgca gccggaatcg ttttccaacc aggtaacttc cacgccggcg cgctgcacga
     1501 tgtccagcag gttgtcttgg tgttcggctt tgatttcgtc ataatccgtg cggtcgaagg
     1561 ttgagaacat acacggcagg gagtgcgcgg tcgatgtgcc gcagcttctg acctgcggga
     1621 aattgacaat ttcatcgccg cgcgcggcaa gcagcggcgt agtttggcgg ctgtaaccgt
     1681 tcaaacccca gttggcggca cgcgtggtct cgcccacgac cagcaccacg aaacggcgca
     1741 ggctgccggc cggccggttt tgcacgaccg ccatatccaa ttgcgtataa ggaatattgg
     1801 aacgcttcca atctttgtat ttcgacacgc ccgcgccgat gaaattagat ggcacaatca
     1861 gatgggttac tgatttattg ttgcggaaaa acgaggcgta atcctgatat tgcaacattg
     1921 cgatgcccaa cgcgcacaaa aaggaaacgg cggcaagcac aaggcgcgtc aaaagctcct
     1981 tataccaaac gcggtattta accttgacgg cgatatacgc cagcgcgggc aatacgccca
     2041 aacatacaat ccacagcaca tagcccggcg taatcaggcg cgcgctttcg gcagccgtag
     2101 tttgcaagac attattcaac atcgacttgt tgaaatagat attgaaaaat atttcttggt
     2161 aagacaccgc cgcactgata accaatatca acggaatcaa taccttatgc acgaaaggca
     2221 gggcaatgac gtgaaaaacg aaattactta aaaaaaacag caccaccggc atcgtataga
     2281 ggaagatatc cgccccggtg ccgttaaaag gatgaagctc gacaactttg gcaaaaaagg
     2341 cgtaattcaa taccagcgag gaatacaggg aaaggaaggc aatcagcgcg gaagagccga
     2401 gcttcggcct caggttcggt tttatcattt ggaatgtgtc ggataagggt tggaaaaggc
     2461 atccggcatt tggaatccgg attattgaaa aagattctta attataaggc aacggagcaa
     2521 agcagggcaa gaaaacggcg gctgtgcggg gggttccgcc cgccattcaa acgtccggca
     2581 gacataaaaa catcgtaagc aagattcgaa ccggtctgca accgcccctg ccagaaaaac
     2641 gggcaaagca tttcatattg gaaaaacccg gccgcgccgc cgacgggaca gtccggcaca
     2701 aacagcatca cgctcggatt gaaaaggacg gatagccgcc ggcagcacaa tcttaccacc
     2761 tccaaaacgc cgccggagaa cgccgaaaca gccgatgccg tctgaagccg cttcagacaa
     2821 catcgggaca tcaaccgtaa cgccgttgga aatcgcgcat aaaatccgcc aaagcccgca
     2881 cgccttcaag cggcatcgca ttataaatgc tggcacgcat accgccgacg gttttatagc
     2941 ccttaagcag gcacaagccc tgcaattcgg cttccagcac aaaacggcgg tcaagctcct
     3001 catcccccgt ttggaacacg acattcattt tagaacgcgc attcggacgg atacggttga
     3061 tatagaaacc gccgctgccg tctatcgtct catacaaggt ttgcgccttc agccgattga
     3121 ccgcttcaat ttttttcaca ccgccctgcg cctgcagcca gcggaacacc agccccgaca
     3181 tataaatcgc gtaagttgac ggcgtgttgt acataccttc gcggttcaaa tgcgaacggt
     3241 agttgaacac atcgggaata tcgttcggac aacgctcgag caaatcctca cggataatga
     3301 ccacggtcgc accggccggg ccgatgtttt tctgtgcgcc tgcgtaaatc agtccgtagt
     3361 cggcaacatc aaactcgcgc gacaaaatct cgctggacat atcgcacacc agcggcggca
     3421 tgccttctga aaggcgcggc acttcacggt attgcagccc gttgaccgtt tcattgacgg
     3481 caaaatggac aaacgccgaa tcgggtgcaa catcccacgt ttccacaggc ggcaggtcga
     3541 gatagtcgaa ctgctcgccg ccatgcgccg ccaaacggat ttccgtatcg gtcaaacggc
     3601 tcatctgttc ataagcgata cggctccagt tgcccgttac caccgcgtcg gcagtgcgga
     3661 aaccgtgtgc cagattcatg gctgccatat taaattgggt tgttgctcca ccctgcagaa
     3721 acaatatctt atagttgtca ggcactttca aaagctgcct caaatcctgt tccgcatgat
     3781 gcaggatgct caaaaacatt tccgaacggt ggctcatcgc catcacagga aaacccgtac
     3841 cgttgtagtc caacatttcc tgccgcgccg tttccaacac ggcttcgggc aatacggcag
     3901 ggccggcgga aaaattgtaa atcggataaa gagacataat gcagccttga ttctgaacaa
     3961 taacccgccc gattttaggc ttgcagcagg ctttgtgcaa ggatgggaaa tacctgtcct
     4021 ccgccccgct tcatgccgcc cgaacacgga aaacaacatc aatatattga tttacaaata
     4081 taaaaatcat gctagcgaca aatagataca tttgttttgt caacaatatt cacgatttcc
     4141 cattacaaac ctcccttaca cccgcttttt tccgtcccaa aaacacaaaa taaatcaaca
     4201 ctttcatttc tccgcaaaag cggttataat cacgccgatt tttcaacttt gacgaaaaat
     4261 ggccacgggg ccattttttt attatgtaca tagggagcag catggatatc caaaccatcc
     4321 tcgaaaaaac cctgcccggc ctgggctacg aactggtcga tttcgaactg accgcgcaag
     4381 gaacattgcg cgtgttcatc gacaaagaaa gcggcattac cgtcgaagac tgcgcaaccg
     4441 tcagcaacca cttgagccgc gtcttcatgg ttgaagacat cgactacaaa aacctggaaa
     4501 tttccagccc cggactcgac cgccccttga aaaaagccgc cgacttcgtg cgctttgccg
     4561 gtcagaatgc caaaatcaaa acccgcctgc cgatagacgg tcagaaaaac tttatcggta
     4621 aaatcgaagg ctgcgaaaac gataccgtta ccgtatcctt cgacggcaaa accgtacaaa
     4681 tcgaattggg caacatcgac aaagcccgtc tgcgccccga attcaaattc taaaacacaa
     4741 caatattgga gatgttcaaa atgagtcgtg aaatgttaca gctggcagaa gcactggcaa
     4801 gcgaaaaaaa cgttgatgcg gaagtcgtct tccaagcact ggaattcgcc ctgtctaccg
     4861 ccgccaagaa aaaggcagac cgcgaacaca tggacgtgcg cgtccaaatc aaccgcgaca
     4921 ccggcgaata ccaaaccttc cgccgctggc tgattgtcgc cgatgaagac tatacctatc
     4981 ccgatgtcga aaaaaccatc gaggaaatcc aagaggaaat tcccggcact accatccaaa
     5041 tcggcgaata ctacgaagag cagctgccca acgaaggctt cggccgccaa gccgcgcaaa
     5101 ccgccaaaca aatcatcctg caacgcatcc gcgatgccga gcgcgagcag aatctgaacg
     5161 agtttctcgc cgtcaaagaa gacatcgtgt ccggcacggt caaacgcgtc gaacgccacg
     5221 gcatcatcgt cgaagtcgtt gccggcaaac tggacgcgct gattccgcgc gaccaaatga
     5281 ttccgcgcga aaacttccgc agcggcgacc gcatccgcgc cctcttcctg cgcgtcgaag
     5341 aaatcggcaa caccggccgc aaacaagtca tcctgagccg tacttccggc gatttcctcg
     5401 tcaaactgta cgccaatgaa gtacctgaaa ttgcagacgg catgcttgaa atccgcgctg
     5461 tcgcccgcga cccgggccag cgtgccaaag tcgccgtcaa agccaacgac cagcgcatcg
     5521 atccgcaagg cacctgtatc ggcgttcgcg gttcgcgtgt caatgccgtc agcaacgaat
     5581 tgtccggcga gcgcatcgac gttgtccttt ggtcgcccga gcctgcccaa ttcgtcatga
     5641 gcgcgctctc acccgccgaa gtcagccgca tcgtcatcga cgaagacaaa cacgccgtcg
     5701 atgtcatcgt tgccgaagac cagctcgcgc tcgccatcgg acgcggcggt caaaacgtgc
     5761 gccttgcttc cgacctgact ggctggcagc tcaacatcat gacttccgcc gaggcagacg
     5821 aacgcaatgc ggcagaagat gccgccatcc gccgcctgtt tatggatcac ttgaacgtgg
     5881 acgaagaaac cgccgacgta ctggttcagg aaggttttgc aaccttggaa gaagtcgcct
     5941 atgttcctgc cgccgaactg cttgccattg aaggatttga cgaagaaatc gtcgatatgc
     6001 tccgcaaccg cgcccgcgat gccatcctga ccatggcgat tgccgccgaa gaaaaactgg
     6061 gcgaagtgtc cgacgatatg cgcaacctcg aaggcataga tgctgatatg ctccgcagcc
     6121 ttgccgaagc aggcattact acccgcgacg acttggcaga gcttgccgtg gacgaactga
     6181 ttgaaatcac cggtgtaaac gaagaaaccg caaaagccgt catcctgacc gcacgcgaac
     6241 actggtttac cgaagacaaa taaagggggt acagatgagt aacacaaccg tagaacaatt
     6301 tgccgccgag ctgaaacgcc ccgtcgaaga cctgttgaaa cagttgaaag aagccggcgt
     6361 cagcaaaaac agcggcagcg attccctgac gctggacgac aaacagcttc tgaacgccta
     6421 cctgaccaag aaaaacggca gcaacggcgg caccatcagc atccgccgca ccaaaaccga
     6481 agtcagcacc gttgacggcg taaaagtcga aacacgcaaa cgcggacgca ctgtcaacat
     6541 tccttctgcc gaagagttgg cagcacaggt aaaagccgcc caaacccaag ccgcacctgt
     6601 ccggccggag cagacggcag aagacgcggc aaaagcccga gccgaagctg ccgcacgtgc
     6661 agaagcccgt gccaaggcag aagcggaagc ggcaaaactg aaagcggcaa aagcaggcaa
     6721 caaagccaaa cctgccgcgc agaaacccac cgaagcaaaa gccgaaaccg cacccgttgc
     6781 ggcggaaacc aaacccgccg aagaaagcaa agcggaaaaa gcccaagccg acaaaatgcc
     6841 gtctaaaaaa cccgccgagc ccaaagaaaa agccgccaag ccgaaacacg agcgaaacgg
     6901 caaaggcaaa gatgccaaaa aaccggcaaa acctgccgca cctgccgtgc cgcaacccgt
     6961 ggtcagcgcg gaagaacagg cgcaacgcga tgaagaagca cgccgcgccg ccgcacttcg
     7021 cgcccaccag gaagccctgt tgaaagagaa acaggaacgc caggcacgcc gcgaagccat
     7081 gaaacaacag gcagaacaac aggcaaaaac cgcacaggaa gccaaaaccg gcagacagcg
     7141 tcccgccaaa cctgccgaga aaccgcaggc agccgcgccg gccgtcgaaa acaagcctgt
     7201 caatccggca aaagcgaaaa aagaagaccg ccgcaaccgc gatgacgaag gtcaaggccg
     7261 caacgccaaa ggcaaaggcg gaaaaggcgg gcgcgaccgc aacaatgcac gcaacggcga
     7321 cgacgagcgc gtacgcggca gcaaaaaagg caaaaaactc aaactcgagc cgaaccaaca
     7381 cgccttccaa gcaccgaccg aacccgtcgt acacgaagtt ttggtgcctg aaaccattac
     7441 cgttgccgac ttggcacaca aaatggcagt caaaggcgtg gaagtggtca aagccctgat
     7501 gaagatgggc atgatggtta ccatcaacca atccatcgac caagacaccg ccctgattgt
     7561 cgtcgaagaa ctcggacaca tcggcaaacc cgccgccgcc gacgatcccg aagccttctt
     7621 ggacgagggc gcggaagcgg tggaagccga agcattgccg cgtccgcccg tcgttaccgt
     7681 catgggccac gtcgaccacg gcaaaacctc gctgctggac tacatccgcc gtaccaaagt
     7741 ggtacagggc gaagcaggcg gcattaccca acacatcggt gcataccacg ttgaaacccc
     7801 acgcggcgtg attaccttct tggatactcc gggtcacgaa gcgtttaccg ccatgcgtgc
     7861 gcgcggtgcg aaagcaaccg atatcgtgat tcttgtggtc gccgccgacg acggtgtgat
     7921 gccgcaaacc atcgaagcga ttgcccacgc caaagcggca ggcgtaccga tggtggttgc
     7981 cgtcaacaaa atcgataaag aagccgccaa cccagagcgt atccgccaag agctgaccgc
     8041 acacgaagtc gtgcctgacg aatggggcgg cgatgtacag tttatcgacg tttccgctaa
     8101 aaaaggcctg cacatcgatg cattgctcga ggcagtcttg ctcgaagccg aagttttgga
     8161 actgaccgca cctgtcgatg cacctgccaa aggtatcatc gttgaggcgc gcttggacaa
     8221 aggccgcggc gcggttgcca cattgctggt tcaaagcggc acgctgaaaa aaggcgatat
     8281 gctgctggcc ggtacggcat tcggcaaaat ccgcgcgatg gtcgatgaaa acggcaaatc
     8341 cattaccgaa gccggtccgt ccatccccgt cgaaatcctc ggcttgtccg acgtaccgaa
     8401 tgcgggtgaa gacgcgatgg tattggcgga cgagaaaaaa gcgcgcgaaa tcgccctctt
     8461 ccgccaaggc aaataccgcg acgtgcgcct tgccaaacag caggcggcga agctggaaaa
     8521 tatgttcaac aatatgggcg aaacccaggc ccaatccttg tccgtcatca tcaaagcaga
     8581 cgtgcagggc tcttacgagg ctttggcggg cagtctgaaa aaactgtcca cagacgaagt
     8641 gaaagtgaac gtgttgcaca gcggcgtggg cggcattacc gaatcggatg tcaaccttgc
     8701 catcgcgtcc ggggcgttca ttatcggctt taacgtgcgt gcagatgcct cttcgcgcaa
     8761 acttgccgaa aatgaaaatg tggaaatccg ctactacaac atcatctatg atgccatcga
     8821 cgacgtgaaa gccgccatga gcggtatgct ttccccggaa gagaaagaac aggttaccgg
     8881 tacggtcgaa atccgtcagg tcatctccgt ttccaaagtc ggcaacattg caggctgtat
     8941 ggttaccgat ggtgtggtca aacgcgattc ccatgtccgc ctcatccgca acaacgtggt
     9001 catccacacg ggcgaactgg cttcgttgaa acgctataaa gacgacgtaa aagaagtccg
     9061 catgggcttt gagtgcggtc tgatgctcaa aggctacaac gaaatcatgg aaggcgacca
     9121 actggaatgc ttcgacatcg tcgaagttgc ccgcagcctg taattccttt gcaaataaaa
     9181 tgccgtctga agcgttcaga cggcatacga aacgggttct gtatcataca gaacccgttt
     9241 tttgtcgcaa atcggcttca gacagccctc ttgccttatc ccgatttgaa tctgacttgc
     9301 catacaaaca ggcttcagac ggc
//
LOCUS       DAXIFD010000078         9207 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.078, whole genome shotgun sequence.
ACCESSION   DAXIFD010000078 DAXIFD010000000
VERSION     DAXIFD010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9207
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.078"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            39..644
                     /locus_tag="ACFOCN_001244"
     CDS             39..644
                     /locus_tag="ACFOCN_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HFC6970394.1"
                     /translation="MNTDFQNILKQLGKQAQKEAAEKQAAEKNKQKQEQDFDFSQAVG
                     QLSPLKNRQQYYAPPDKTPIKVRPKDNRADEENYFYIGSTYNDPPASFSKNGQGKNDI
                     QRLKNGYYPVVTDVDLHGYTQEEAQKVLNEFIAFTQKRGVCGEIIHGSGLGSKGYKPV
                     LKNMTRNWLMQHPDVLAYAEPREGNDGCVRILLKRKLRQQD"
     gene            707..1069
                     /gene="ssrA"
                     /locus_tag="ACFOCN_001245"
     tmRNA           707..1069
                     /gene="ssrA"
                     /locus_tag="ACFOCN_001245"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(1386..1571)
                     /locus_tag="ACFOCN_001246"
                     /pseudo
     CDS             complement(1386..1571)
                     /locus_tag="ACFOCN_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
     gene            complement(1587..2186)
                     /locus_tag="ACFOCN_001247"
                     /pseudo
     CDS             complement(1587..2186)
                     /locus_tag="ACFOCN_001247"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2140..2550)
                     /locus_tag="ACFOCN_001248"
     CDS             complement(2140..2550)
                     /locus_tag="ACFOCN_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HFC6970395.1"
                     /translation="MIEFVRAKKRLLWAFVLLLVWTCGYRYAADKAEAEQTALIATYR
                     HSSMVAAEQYALQLKKAQDERQRWYDFSQKQGRKPVKKQYPPQTKKAGYLKTKEELLA
                     ELACLTAEMAALKKPDALIHGKEVRQKERNSSQG"
     gene            complement(2547..2878)
                     /locus_tag="ACFOCN_001249"
                     /pseudo
     CDS             complement(2547..2878)
                     /locus_tag="ACFOCN_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2987..3490)
                     /locus_tag="ACFOCN_001250"
     CDS             complement(2987..3490)
                     /locus_tag="ACFOCN_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HFC6970396.1"
                     /translation="MSDEFNRFIERVLSHEGGYVNHPQDPGGETNWGITKRTAQANGY
                     NGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAG
                     VPDDGIIGEISLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIH
                     AAADNAD"
     gene            complement(3580..4062)
                     /locus_tag="ACFOCN_001251"
     CDS             complement(3580..4062)
                     /locus_tag="ACFOCN_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970397.1"
                     /translation="MKKYLPLLRFLLIACISAFLAWKGQPFVHGNEKAVDLIINVFAI
                     LAGFLIAIMTLFSDMRFDEDANWRQIQIREGVQEQRYIKHSLLFYTYLAVLVCVFIVI
                     LLAHKEEYKNGPAIFWLERSYLFLACISIFYSVFLPGNLIKSRKEEFKKLMEKKKPKI
                     "
     gene            complement(4059..4970)
                     /locus_tag="ACFOCN_001252"
     CDS             complement(4059..4970)
                     /locus_tag="ACFOCN_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970398.1"
                     /translation="MFDLEVALRRVLSAAPTVQDTQIEQYNQLTQIMHRTLDPKDVKG
                     NSIGGLLIHIGSGTKDEHIRTMSNRPVQQDDHGGTQAPPSGYSFLRKEAFLYIVGHHV
                     IFCGHGFLSASTVASYLSLLSNKLRENNPDIVQFNIEFKAVGNCDKLSLIQQHGVKSI
                     LLDVSAYQLSRNRLYQDSRSTIAKALGKVGSVFTSELSDEELEAQSEIHINLEVLLNG
                     NSRASIEAQSLMQEQAEEIIDDETVNQGFSITTQQGEVIQPSDVKLSKSVRIGRYDEA
                     NSLLPDSAFTAISEYFLELQSRNLTEQ"
     gene            complement(5260..5505)
                     /locus_tag="ACFOCN_001253"
     CDS             complement(5260..5505)
                     /locus_tag="ACFOCN_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970399.1"
                     /translation="MFDFEQQIKWGERAEEIVKEAATQNNIEIPEPLASALAKAVKVH
                     YLSQAGVFSLVEAYADTVNPTEKEVDYQAIGKELFEK"
     gene            complement(5534..5911)
                     /locus_tag="ACFOCN_001254"
     CDS             complement(5534..5911)
                     /locus_tag="ACFOCN_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6970400.1"
                     /translation="MISKSLFGNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVF
                     MPSGDVLLSFLNMGIDVSSLFAAEQGIRPSENSEISKEESELLGYYRQASDNGKFVIL
                     SVAKGAEKKAAENTQVSATHKTA"
     gene            6025..6204
                     /locus_tag="ACFOCN_001255"
     CDS             6025..6204
                     /locus_tag="ACFOCN_001255"
                     /inference="COORDINATES: protein motif:HMM:TIGR04111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6970401.1"
                     /translation="MYGYTVEKLKENFAQNGQTLAQWARENGFKPRDVYLVVGGQRKG
                     NYGKGHEIAKKLGLK"
     gene            6216..6506
                     /locus_tag="ACFOCN_001256"
     CDS             6216..6506
                     /locus_tag="ACFOCN_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6970402.1"
                     /translation="MAESKRVQRLLRVFIALDEHPIIGLSNKDLSVGLGLTPSQVSRD
                     IDDLVASGLVIKLENGNYAYGIKTLQIAERFRQQHERLQSKIAKIGKRVDVD"
     gene            6551..7426
                     /locus_tag="ACFOCN_001257"
     CDS             6551..7426
                     /locus_tag="ACFOCN_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3102 domain-containing protein"
                     /protein_id="HFC6970403.1"
                     /translation="MNTEIEIIATDKVSNQAAMRSVLVMEQWGNGETYSEERWVERGR
                     QAVRQTMEGMFELGRALIILKEHTEHGRFMEIVKSQFGLGIAETSRLMSATRRFATPQ
                     MQKAAPKLMDLGKSKLLELLVEEDVTLVGLAEGEEVNGMTFDDVDRMTVRELRVALRE
                     SRENLAAKDEVMKTKTAKIDELTEKLAKKQTVVREPKAEDVGSELAMQLTSLEVGIRS
                     QVSRLKDLFDQLNAHSEAHEISHQAKMVGTLNQIILDCEQLRESYALPTEAPTDNVPE
                     WLGGETGEGDESGND"
     gene            7419..7763
                     /locus_tag="ACFOCN_001258"
                     /pseudo
     CDS             7419..7763
                     /locus_tag="ACFOCN_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701232.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            7738..8373
                     /locus_tag="ACFOCN_001259"
     CDS             7738..8373
                     /locus_tag="ACFOCN_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HFC6970404.1"
                     /translation="MGKPGKSSRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVP
                     LSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTP
                     GKSKHTMHGFRHLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYR
                     LQERRELAEWYSRRHRQAYEAAAKTPQNKKPPEKNSDGILPKTLAIKPKRY"
     gene            8443..8646
                     /locus_tag="ACFOCN_001260"
     CDS             8443..8646
                     /locus_tag="ACFOCN_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970405.1"
                     /translation="MNIIEQEMKHSSLRKVDAEIAKIIADAHKINAESVKIAQESRWY
                     PMIAATGLVTAIAAVLALIFKFA"
     gene            8683..8964
                     /locus_tag="ACFOCN_001261"
     CDS             8683..8964
                     /locus_tag="ACFOCN_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970406.1"
                     /translation="MNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGEC
                     PGGHYRHSENGITLYDFIFFDGKPADEARFAAVLTETCRRAVKKICETK"
     gene            8976..9188
                     /locus_tag="ACFOCN_001262"
     CDS             8976..9188
                     /locus_tag="ACFOCN_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HFC6970407.1"
                     /translation="MELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPD
                     TETRRADMPLEKWRQFLDWIEKTNAV"
BASE COUNT         2531 a         2325 c         2122 g         2229 t
ORIGIN      
        1 cgcccgaaac agccatcgga caaataacag gaaaaaatat gaataccgac ttccaaaaca
       61 tcctcaaaca actgggcaaa caagcccaaa aagaagcggc agaaaaacag gcagccgaaa
      121 aaaacaagca aaaacaagaa caggatttcg atttttcaca agcagtcgga caactctccc
      181 cattaaaaaa ccggcagcaa tattatgcgc cgcccgacaa aacccccatc aaagtccgtc
      241 ccaaagacaa ccgcgccgac gaagaaaact acttctacat cggcagcaca tacaacgacc
      301 cgcccgccag cttcagcaaa aacggacagg gaaaaaacga catccaacgc ctgaaaaacg
      361 gatactatcc cgtcgttacc gatgtcgacc tgcacggcta cacacaggaa gaagcccaaa
      421 aagtcctcaa cgaattcatc gcattcaccc aaaaacgcgg cgtatgcggc gaaatcatcc
      481 acggcagcgg attaggttcc aaaggctaca aacccgttct gaaaaatatg acccgaaact
      541 ggctgatgca acaccccgac gtactcgcct acgccgaacc ccgggaaggc aacgacggct
      601 gcgtccgcat cctgctcaaa cgcaaattaa ggcagcaaga ctgacaaatt tctccgacag
      661 acttggcagc accgcacaat atccgtataa tttgcaaacc atttttgggg gcgaccttgg
      721 tttcgacggg ggttgcgaag cagatgcggg cataccgggg tctcagattc ccgtaaaaca
      781 ctgaattcaa atagtcgcaa acgacgaaac ttacgcttta gccgcttaag gctagccgtt
      841 gcagcagtcg gtcaatgggc tgtgtggcga aagccaccgc aacgtcatct tacattgact
      901 ggtttcctac cgggttactt ggcaggaaat aagacttaag gtaactggtt tccaaaaggc
      961 ctgttggtcg gcatgatgga aataagattt tcaaatagac acaactaagt atgtagaacg
     1021 ctttgtagag gactttcgga cgggggttcg attccccccg cctccaccat accctatttt
     1081 cagcagcatc ctgcaacaca aaaaagcctt gaacttcaac agtttcaagg cttttttgtg
     1141 ttgcaggatg ctggcgtatg cttgagtttt cgccatttat ggggtaactt ttggggtaac
     1201 ttttcacgaa ttaccccaaa aaacgcctta aaaatgcaaa agtcatcacg cattttttta
     1261 aaaaggttac ccaaaactta aatgtaatcc tttatttata agcttgcagc tttccaaaca
     1321 agttaccccc aaacggataa aaaaatgccg aagccgaact gaccccaaaa agtcggacag
     1381 tttaatcaag cggctttcag ggactgaatt ctgtactgaa caaggctcag cccttttaat
     1441 ttcaacttga ttctatcgtt gttgtatagt ggattaaatt taaaccagta cggcgttgcc
     1501 tcgccttgcc gtactatttg tactgtctgc ggcttcatcg ccttgtcctg atttaaattt
     1561 aatccactat aaaaaaacat ctgatattgc caaccttgat ccgaatgcag tatcggcttt
     1621 tcagacgatc ccggtttctc cggcgcacct ttcagtatct cgccggccaa atcgaaagtc
     1681 gggcggattt gaatacggta actgacgatt tccccgttaa acaaatccat aatcggagaa
     1741 aggtatatct tttctccgcc tacattgaac tcggtaacgt ccgttaccca tttctcattc
     1801 ggcttttctg catggaaaca gcgtcgcagg atattcggcg caattttgcc gacttctcct
     1861 ttgaacgagc ggtatttgcg ccgccgtatc actgccttca gccccgtctt cgccatcaga
     1921 cggctgactt tcttgtgatt gaccggtgtt cctgcgtgac ggatggctgc cgcaatcctc
     1981 cggtagccgt atcttccctt atgtcgtcga taaatatcat ggatatgccg tttcaaatcg
     2041 gcatatttgt cttctgccga ttggacggcc aattggtaat agaaggtgcc gcgtggcagt
     2101 ccgacaatct ccaacagcag ttcaacggat ggcattgcct taaccctgcg acgagttgcg
     2161 ttctttctgc cgcacttctt tcccatggat taaggcatcg ggctttttta gggcagccat
     2221 ttccgctgta aggcaagcca attccgcaag cagttcttcc ttggttttca gatagccggc
     2281 ttttttcgtt tgcggcggat actgtttttt cacgggcttt cttccttgtt tttgggaaaa
     2341 gtcgtaccac cgctgccttt cgtcctgcgc ttttttaagc tgcaaggcat attgttccgc
     2401 cgcaaccata gaagaatgcc gataggtggc aatcagggcg gtttgttccg cttcggcctt
     2461 gtcggcggcg tatcggtaac cgcacgtcca cacaagcaaa agcacaaatg cccaaagcag
     2521 ccgttttttg gctcggacaa attcaatcat tgccgccccc cttcctgatt tgcggatttt
     2581 ttgacttccg ccaactgcgg tacggcggcg atgccgcgtt tgattaatgc atacccgccg
     2641 accatcgcgc cgtatgccca ccaaagccat tcgggcgcgt ccgccgcctg cacgaacttc
     2701 caagtcatgg cggctgcggc gacgtttgcc caaagtttgg tatggctgat tttccctgtg
     2761 gccggattag agaccaagcc gcccagccat cggaaaaagg cggttatttg tgacgctttt
     2821 tttggctgcg cgtttcgcgg cggctacccc gctcttgcgg tgggcttgcg tccaacatcc
     2881 ctgagtcggc atggcgtagc gaatgcctag gtcgctgtgg ctgaaatcgg gctgcatggc
     2941 tgcggccatc agggcgagaa tggacttttt tgacatggtt tgctcctcaa tcggcattgt
     3001 ctgcggcggc gtgaatcagg ttttgcgcca cacggcgtac ccagcccttg ccgaaagagg
     3061 tgaacgtacc cagcttggta taaaagacca gacgctcggc gttgaaccgc aataaaaggt
     3121 cgttttcggg aagggaattg atggctttga ggctgatttc gccgatgatt ccatcgtccg
     3181 gcacgcctgc ggcgcgttgg agcatacggg cggcattgcc gtaaccgtgg ttgacgcagg
     3241 catcaaaaaa ttggaacgcg accgcttccg gcatttggtc ggcgcggtaa cgctcccaaa
     3301 acgctttacg gtaaatgctg attgcctgtt cacgcgtcat ggcacgcatg gagccgttgt
     3361 agccgtttgc ctgggcggtg cgcttagtga tgccccaatt ggtttcgccg ccggggtctt
     3421 gagggtggtt gacgtaaccg ccctcgtggg agaggactcg ttcgataaat cggttgaatt
     3481 cgtctgacat ggaaaaatcc ctgtattgaa ttaaaaatca atacagggat tttagaaaag
     3541 gtcgtctgaa tgggatttta aagggggtta aaactcgttc tagattttgg gtttcttctt
     3601 ttccattaat tttttaaact cttcttttcg gcttttaatt aaattcccag gtaagaatac
     3661 agaataaaaa atggaaatac aggctaaaaa taaatagctc cgttcaagcc aaaaaatggc
     3721 tggtccattt ttgtattctt ctttatgagc caacaagatg acaataaaaa cacaaactaa
     3781 tacggcaaga tatgtgtaaa aaagtaagga atgttttata taccgttgtt cttgtacgcc
     3841 ttcacgaatt tgaatttgtc gccaatttgc atcttcatca aacctcatat cactaaacaa
     3901 tgtcataatg gcaattaaaa aaccggctaa gattgcaaat acgttaataa ttaaatcaac
     3961 ggccttctcg ttcccatgaa caaaaggttg ccctttccat gctaaaaatg ctgatataca
     4021 agcaatcaac aaaaaacgta gtaagggcag atattttttc attgttcagt taagtttctg
     4081 ctttggagtt ctaggaaata ttcactgatt gctgtaaatg ccgagtcagg gagtaacgag
     4141 ttggcttcat cgtatcgtcc tattctaaca gatttagaca gttttacatc agagggctga
     4201 atcacttcac cttgttgcgt ggtaatggaa aatccttgat taaccgtttc atcatcaata
     4261 atttcctctg cctgctcctg catcagcgat tgcgcttcaa tactggctct cgaattaccg
     4321 tttagcaaga cttctaaatt gatatgaatt tcggattgtg cttccaattc ctcatcactc
     4381 aattcgcttg taaatacact accaactttc cctaatgctt tagcaatggt tgaacggcta
     4441 tcttgataca gtctgtttct ggataattga tatgccgaaa catctaaaag aatacttttt
     4501 accccatgtt gttgtatcaa tgacaacttg tcgcaattac ctactgcttt gaattcaata
     4561 ttaaattgaa caatatccgg attgttctct ctcaatttat tgctaagtaa acttaaataa
     4621 gaagcaaccg ttgatgctga caaaaaacca tgtccgcaaa aaattacatg gtgtccaaca
     4681 atatacaaaa aagcctcttt acgcaaaaag gaatatccac ttggaggagc ttgtgttcca
     4741 ccatgatcat cttgctgtac aggtctattg ctcatagtgc ggatatgttc atcttttgta
     4801 ccgctgccaa tgtgtatcag taatccacca attgaattgc cttttacatc tttaggatcc
     4861 aaagttctat gcatgatttg ggtaagctga ttgtattgtt caatttgtgt atcttgaaca
     4921 gtaggagcag ctgacaaaac ccttcttaat gctacctcta aatcgaacaa gctatggttt
     4981 tgctgcgcac gtaaataatg aatagtttta gtagtttttt tgccatttgt acagtccttt
     5041 ctcttttaat atctgtgtcg aaaaaataaa ttcagacggc atcaattcaa atctttcaac
     5101 acctgaacca cctgcccgat gacctgtatg tcggggtagt ttttaatgcg ttttaaaatg
     5161 cacggccgct tcaattgctt aatatccgtt tcagaacacc ggagcagccc gactgtcgga
     5221 gtgtcctaaa tgccgtctga aaatttcaga cggcattttt tatttttcaa atagctcttt
     5281 gccgattgct tggtaatcta cttctttttc agttggattt accgtgtctg cataggcttc
     5341 taccaaagaa aacacaccag cttggcttag ataatgcact tttaccgcct tagctaatgc
     5401 cgaagccaaa ggttcgggaa tttcgatatt gttctgggtg gctgcctctt taacgatttc
     5461 ttccgctcgc tcaccccatt tgatttgttg ttcaaagtca aacataagac tgtctccatt
     5521 ttggatttaa aaatcacgct gttttatgcg tggctgaaac ttgagtattt tcggctgctt
     5581 ttttctctgc gccttttgcc acactgagaa tgacaaattt gccgttatcg ctggcttggc
     5641 ggtaataccc taataactct gactcttcct tactaatttc agaattttca gacggcctaa
     5701 ttccctgttc agcagcaaat aagctgctca catctattcc catattcaaa aaagagagca
     5761 atacatctcc actaggcata aatacgccac gttcgtattt gccccatgtt tcgcgctcaa
     5821 tacctgcttt ttcagcagct tgtgcttggg taagccctaa aaactttctt ttttctttca
     5881 aacgattacc aaaaagagat ttagaaatca caaaataatc cttgcaaaag agattttaaa
     5941 atctcataat tcacgcattg gtaatgcact aattaatttc tagtgcataa atagttcact
     6001 attttatcac aatgggaaag ggctatctat ggctatactg ttgaaaaact aaaagaaaat
     6061 tttgcccaaa acggccaaac gctggcgcag tgggcaagag agaacggctt taagccgcgc
     6121 gatgtgtatc tggtggtcgg cggacagcgc aaaggcaatt acggcaaggg gcatgaaatt
     6181 gccaagaagc tgggactgaa ataaggagga tgcggatggc agaaagtaaa agggtacaac
     6241 ggctattgag ggtctttatc gcgcttgacg agcatccgat tatcggtctg agcaataagg
     6301 atttatcggt cggactgggg ctgacgccat cgcaagtcag cagggatatt gatgatttgg
     6361 ttgcctcggg attggtcatc aaacttgaaa acggcaacta cgcctacggc atcaaaaccc
     6421 tgcaaatcgc agagcggttc aggcagcagc atgaacggct gcaaagcaag attgccaaaa
     6481 tcggcaagcg ggtcgatgtg gattaacgga ttttgaaagt ttccgacgtc ggaaactttg
     6541 gagataaaaa atgaatacag aaattgaaat tatcgcaacc gacaaagtaa gcaatcaggc
     6601 agcgatgcgc agtgtgctgg tgatggagca gtggggtaac ggcgagactt atagcgaaga
     6661 gcgttgggtt gaacgcggtc gtcaagcagt acggcagacg atggaaggca tgttcgaact
     6721 gggacgtgcg ctgattattt taaaagagca tacggaacac ggacggttta tggaaattgt
     6781 gaaaagccaa tttgggctgg gtatcgcaga aacatcacgt ctgatgtcag ccactcgccg
     6841 ctttgcgacc ccgcaaatgc agaaagccgc gccgaagctg atggatttgg gcaagtcaaa
     6901 gctgctggaa ctcttggtcg aagaagacgt tacgttggtg ggacttgccg aaggagaaga
     6961 agtcaacggc atgacctttg acgatgtgga ccgaatgacg gtgcgcgagc tgcgcgtcgc
     7021 cctgcgcgaa agccgtgaaa acctcgccgc caaagacgaa gtgatgaaaa ccaaaacagc
     7081 caaaattgat gagctgaccg agaagctggc taagaagcaa accgttgtca gagagccgaa
     7141 ggcggaagac gtgggcagtg agttggcgat gcagttaaca agccttgagg tcggtatccg
     7201 cagtcaagtg agccgtttga aagatttgtt cgaccaactt aatgcgcaca gtgaggcaca
     7261 cgagatcagc catcaggcaa agatggtcgg cacgctcaat caaattattt tggactgcga
     7321 gcaactgcgc gaaagctatg ccctgccgac tgaagcaccg acagacaatg tgccggaatg
     7381 gttgggcggt gaaacgggag aaggcgatga atccggcaat gattgagcgt cttaaggcag
     7441 tcgagaatca ggcggaagca atgggacgcg gcgcacgctc tgcatatctt aagcagcagg
     7501 cgcaggaatt gggcatcagc cttgccacgc tataccgcaa gctggaggcg gtcagcatca
     7561 agccgacgcg caaacggcgc agcgatgcgg gcaagacgga gcttaaaccg gaagaagcca
     7621 aattgatttc ggcggttttg gtggaggcga tgaggcgcaa cggcaagcgg ttgatgtcgg
     7681 tgcggcaggc ggtggaaatg ctgcgcgcca acggaaaaat cgaggcggcg cggattgatg
     7741 gggaaaccgg ggaagtcatc ccgtccgtcc gcactgcttt ccgcccgctg gcaagacatc
     7801 gacctcaccg cccggttatg gcacatcccc gccgccgaca tgaagaccaa acaccccttt
     7861 accgtcccac tgtcggactg ggcggtagaa atactccgag agctgcacac acagaccggc
     7921 gacaacatcc accttttccc aggcatccgc ccacggcgca aacccgcccc ccatcccgac
     7981 cacatcagca tcaaattcgc ccacaacgcc atccgacgac tgggctatga cggcagcacc
     8041 cccggcaaat ccaaacacac aatgcacgga ttccgccacc tcttcaccaa catcagcctg
     8101 accgccggaa aagacaccct cacaacagac ctcgccctcg gccacatcag ccgcgccgcc
     8161 ctccaacgcg ccggcttctc aagcctgcac cactacctga ccgccgacag ctaccgcctc
     8221 caagagcggc gcgaactcgc cgaatggtac agccgccgcc accgccaagc atacgaagcc
     8281 gccgccaaaa ccccgcaaaa caaaaaaccg cctgaaaaaa attcagacgg catcctgccc
     8341 aaaacacttg caataaaacc taaaaggtat taatgtacac acatggcaga catcctgcca
     8401 tccgacaagc agcggcaacc gccaaaaacg aaaggaaatc caatgaacat aatcgaacaa
     8461 gaaatgaaac actccagtct gagaaaagta gatgccgaaa tcgccaaaat cattgcagac
     8521 gcgcacaaaa tcaacgccga atccgtaaaa atagcccaag agtcccgctg gtatcccatg
     8581 atagcggcca ccgggctggt taccgccatc gccgccgtgt tggcactgat attcaaattt
     8641 gcctgaccac aagccccgcg aggggcttta tccctcaaca aaatgaacag agccgcacta
     8701 ttcaaccgct accccgaatg gattatcggg caagacggcg caagccgttt cattacccat
     8761 tgccgctatc cccgcctgat tgccaaaatc cacaggcaga cagacggcga atgcccgggc
     8821 gggcattacc gccattccga aaacggcatc accctttacg attttatttt tttcgacggc
     8881 aaaccggcag acgaagcccg atttgccgcc gtccttaccg aaacctgccg cagggcagtc
     8941 aaaaaaatat gcgaaacaaa ataaaccgca acgacatgga actcggctac acgccttaca
     9001 accttcgcac ccttcgcaac cgctgcaaac tgacacaggc cgagttggcg caaatcgtcg
     9061 gggtgaagca ctacatacag gtaggccgct gggaagccga acccgatacc gaaacccgtc
     9121 gggccgatat gccgctggaa aaatggcggc agttcctcga ttggatagaa aaaacaaacg
     9181 ccgtctgaaa ccttcagagt gcgaagc
//
LOCUS       DAXIFD010000079         8922 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.079, whole genome shotgun sequence.
ACCESSION   DAXIFD010000079 DAXIFD010000000
VERSION     DAXIFD010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8922
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.079"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            188..622
                     /locus_tag="ACFOCN_001263"
     CDS             188..622
                     /locus_tag="ACFOCN_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HFC6970408.1"
                     /translation="MNFALSVITFTLASFLPVPPAEAAVFTWKDGGGNSYSDVPKQLH
                     PDQSQILNLRTRQTKPAVKPAQADAGKRTDGAAQENNPDTAEKNRQLEEEKKRIAETE
                     RQNKEENCRISKMNLKAVGNSNAKNKDDLIRKYNNAVNKYCR"
     gene            complement(671..2014)
                     /locus_tag="ACFOCN_001264"
     CDS             complement(671..2014)
                     /locus_tag="ACFOCN_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HFC6970409.1"
                     /translation="MFHSVNVFTGETLYRRPAQDYAEFERRLADLKMRGGAFAQLGVT
                     ERAARLQKFADRLEAEKERFAEMVCEEVGRCLHECRAEIGKSIELIRYYARLAPELLA
                     HKTIATQASLSQVRFEPLGVVFAVMPWNYPVWQVLRFAVPAMCAGNACAVKPAPSVAR
                     VSQALFDLVSDGIPLAGAWLDEAGTLKAVEDTDAMAFTGSTHTGRILAAHAGANLKKT
                     VLELGGSNAFIVMPDADLERAAAEACYSRFRDAGQSCNAAKRIIVTEAAADRFITLFL
                     AECAKLKMGDPKHPDTTLAPLHREDLRDRVHGQVEDAVSNGAVCLTGGKIPQGRGWFY
                     PATVLDRVNPACRVWREEVFGPAALILRAENEEHAIALANDSPFGLGACIYTADTERA
                     WRFAEKIQAGSVFINRHTSSDLRLPFGGVKDSGYGRELSEFGLYEFVNVKTYWQK"
     gene            complement(2019..2672)
                     /locus_tag="ACFOCN_001265"
     CDS             complement(2019..2672)
                     /locus_tag="ACFOCN_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HFC6970410.1"
                     /translation="MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVAR
                     TAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNL
                     GAQPETGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYSDIALIIVAGL
                     VVSAICYAILIVAGKVSRLLGATGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG"
     gene            2823..3113
                     /gene="gatC"
                     /locus_tag="ACFOCN_001266"
     CDS             2823..3113
                     /gene="gatC"
                     /locus_tag="ACFOCN_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HFC6970411.1"
                     /translation="MALTLADVDKIARLSRLHLTAAEKEKSLQELNDIFAMVEQMQTI
                     NTDGIEPMAHPHEAALRLREDEVTETDRAAEYQAVAPEVRNRLYIVPQVIEE"
     gene            3176..4621
                     /gene="gatA"
                     /locus_tag="ACFOCN_001267"
     CDS             3176..4621
                     /gene="gatA"
                     /locus_tag="ACFOCN_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HFC6970412.1"
                     /translation="MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPALNGYITI
                     DQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTA
                     TVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVA
                     ARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAE
                     DCAILLNAITGFDPKDSTSLEREKEDYTRDLNQPLKGVKIGLPKEYFGEGNSADVLTA
                     LQNTIDLLKAQGAELIEVSLPQTKLSIPAYYVLASAEAGTNLSRYDGVRYGHRAAQFA
                     DLEEMYGKTRAEGFGSEVKRRIMIGTYVLSHGYYDAYYLKAQKLRRLVADDFQTAFAR
                     CDLILAPTAPTAAPKIGADASPVETYLSDIYTIAVNLAGLPALTLPAGFSGGGLPVGV
                     QLVGNYFAEAKILGAAHQIQLNSDWHGKRPE"
     gene            4618..5550
                     /locus_tag="ACFOCN_001268"
     CDS             4618..5550
                     /locus_tag="ACFOCN_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HFC6970413.1"
                     /translation="MKQNRTFTFPDFRTVYSYAPLYRLQHLKYTLRKFFGKKEIYAFE
                     QFVNASPIRQGLFLHCPQNAYPLLREFVDRRFNCKRRLDAMTADFLMAEKLFGTDILH
                     QMEDYRFHLVLAHLSDGISLWLNRNDNCVEEGAWSLSLRDEAGNRLYMATFAFVGTHL
                     LTASVQGPAGEEAKDTVRRITKQLHGLRPQQLMVTALQYFAAVLGLDGAMGIAQKHQV
                     KLRWKLKKRVKMNYDAFWQEYGASLERDGYWHLPQTPARKDLTDIESKKRSMYRKRYE
                     MLDNMVAEMKDGLKTEARGISDGIQTEKPLRRTA"
     gene            5593..7023
                     /gene="gatB"
                     /locus_tag="ACFOCN_001269"
     CDS             5593..7023
                     /gene="gatB"
                     /locus_tag="ACFOCN_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HFC6970414.1"
                     /translation="MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHASVVECAL
                     PGVLPVMNREVVEKAIKLGLALDAKINRKNVFDRKNYFYPDLPKGYQISQLDLPIVEH
                     GKLEIVVGDDVKTINVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPELR
                     SAAEAVAYAKALHSLVTWLDICDGNMAEGSFRVDANVSVRPKGQAEFGTRREIKNLNS
                     FRFLEQAINYEAEAQIEILEDGSKVQQATMLFDPEKGETRVMRLKEDAQDYRYFPDPD
                     LLPVIISDAQMQKAKAEMPELPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAK
                     ASGQGKPTANWMNGELAAALNKAGLELADSPITAPRLAALVGKIADGTLSSKLAKKAF
                     EAMWAEPESTIAEIIEKHGLQQMTDTGAVEAMVDEVLANNAKAVEQFKSGNEKALNAI
                     VGQVMKASKGKANPAQVQELIKAKLA"
     gene            7115..8125
                     /locus_tag="ACFOCN_001270"
     CDS             7115..8125
                     /locus_tag="ACFOCN_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HFC6970415.1"
                     /translation="MNHTVTLPDQTTFAAGDGETVLAAAARQNLNLPHSCKSGVCGQC
                     KAELVSGDIQIGGHSEQALSEAEKAQGKILMCCTTAQSDISLNIPGYKADALPVRTLP
                     ARIESMVFKHDVALLKLALPKAPPFAFYAGQYIDLLLPGNVSRSYSIANSPDQEGILE
                     LHIRRRENGVCSEMIFGSEPKVKEKGIVRVKGPLGSFTLQEDSGKPVILLATGTGYAP
                     IRSILLDLIRQDSGRAVHFYWGARHQDDLYALEEAQGLACRLKNACFTPVLSRPGEGW
                     QGRKGHVQDIAAQDHPDLSEYEVFACGSPAMTEQAKNLFVQQHKLPENLFFSDAFTPS
                     AS"
     gene            complement(8254..8886)
                     /gene="pdxH"
                     /locus_tag="ACFOCN_001271"
     CDS             complement(8254..8886)
                     /gene="pdxH"
                     /locus_tag="ACFOCN_001271"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HFC6970416.1"
                     /translation="MDLHNIREDYSKRELSEGDCADNPIEQFERWLDEAVRAQVNEPT
                     AVNVAAVDGRGRPNSRMVLLKEVNSEGFVFFTNYHSRKGRSLDAHPFAAMTFFWPELE
                     RQVRVEGRVERLAEKLSDEYFESRPYQSRLGAWASAQSEVIPNKAVLVAKAAAVGLKH
                     PLHVPRPPHWGGYIVIPDLIEFWQGRPSRLHDRIQYRLLDGGWIRERLSP"
BASE COUNT         2278 a         2744 c         2171 g         1729 t
ORIGIN      
        1 tctgcggctt cgtcgccttg tcctgatttt tgttaatcca ctatattttt gggaatctgt
       61 tttaccccaa tatataaagc accatattaa ggcggagttt cttccccact ttgaaccgaa
      121 cccggaaaag acaccgccca agccaatcct gatgctgccc cggcagccaa ccatcaagga
      181 aaccctaatg aactttgctt tatccgtcat cacatttacc ctcgcctctt tcctgcccgt
      241 cccgcccgcc gaagccgccg tctttacttg gaaggacggc ggcggcaaca gctattcgga
      301 tgtgccgaaa cagcttcatc ccgaccagag ccaaatcctc aacctgcgga cgcgccaaac
      361 caaaccggcg gtcaaacccg cccaagccga cgcagggaag cgcacagacg gcgcggcaca
      421 ggaaaacaat cccgacactg ccgagaaaaa ccggcagctt gaggaagaaa agaaaagaat
      481 tgccgaaacc gaacggcaga acaaagaaga aaactgccgg atttcaaaaa tgaacctgaa
      541 agcggtggga aattcaaatg caaaaaacaa ggatgatttg attcggaaat acaataacgc
      601 cgtaaacaaa tactgccgtt aatcggctct agcgcaaacc ccatgccgtc tgaaacggca
      661 cggggtttgt ttatttctgc cagtaggttt tgacgttgac gaactcgtac agcccgaatt
      721 cggacaattc gcgcccgtaa ccggaatctt tgactccgcc gaaaggcagg cgcaaatcgc
      781 tgctggtatg gcggttgata aacaccgatc ccgcctgtat tttttcggca aaccgccaag
      841 cgcgttcggt atcggcggta taaatgcagg cacctagccc gaacggggaa tcattggcaa
      901 gggcgatggc atgttcttcg ttttcggcgc gcaaaatcag ggcggccggc ccgaatactt
      961 cttctctcca gacgcggcag gcaggattta ccctgtctaa aaccgtcgcg ggataaaacc
     1021 agcctcgccc ttgtgggatt tttccgccgg tcaggcatac cgcgccgttt gaaacggcat
     1081 cttcaacctg cccgtgaacc ctgtcccgca aatcttcgcg gtgcagcggt gcaagcgtag
     1141 tatcgggatg tttggggtcg cccattttca atttggcgca ttcggcaaga aacagcgtga
     1201 taaaacgatc ggctgcggct tcggttacga tgatgcgttt ggcggcgttg cacgattgcc
     1261 ccgcatcgcg gaaacgggaa taacaggctt ctgcggcggc gcgttccaaa tcggcatcgg
     1321 gcatcacgat aaaggcgttg ctgccgccga gttccaagac ggttttcttg aggtttgcgc
     1381 ccgcatgtgc cgcaaggatg cgccccgtat gcgtcgagcc ggtaaacgcc atcgcatcgg
     1441 tatcttcaac cgccttgagc gtgcccgcct catccaacca cgcgcctgcc aaaggaatgc
     1501 cgtctgaaac caaatcaaac aacgcctgac tgacgcgtgc cacgctgggc gcgggtttga
     1561 cggcgcacgc gttgcccgcg cacatagcgg gaacggcgaa acgcaatacc tgccagacgg
     1621 gatagttcca aggcatgacg gcaaacacca cgcccaaagg ctcaaacctt acctgactca
     1681 aactcgcctg cgtcgcgatg gttttgtggg cgagcagttc gggagcgagg cgggcgtaat
     1741 agcgtatcag ttcgatagac ttgccgattt ccgcacggca ttcgtgcagg cagcgtccga
     1801 cttcttcgca caccatttcc gcaaaacgct ctttctccgc ctccaaacgg tcggcaaatt
     1861 tttgcagacg cgcggcacgt tcggttacgc ccagttgcgc gaacgccccg ccgcgcattt
     1921 tcaaatccgc cagccgccgt tcaaactccg cataatcttg agctggacgg cggtaaagcg
     1981 tttcgcccgt aaatacattg acactgtgaa acatcgaatc aacctgccag ttgcgggaat
     2041 atcgttttca gtcccgacac aataatctcc accgataccg ccgccagcat catacccatg
     2101 atacggttta aaatcgtcag ccccgtcgcg cccagcaggc ggctgacctt ccctgcaaca
     2161 attaaaatgg cataacaaat cgcactgacc accaaaccgg ccacgataat cagcgcgatg
     2221 tcgctgtacg ttttggctgc cgaagcgtaa ataatcacgg tcgaaatacc gcccgggccg
     2281 atggtgatcg gtatggcgat gggcacgacg gcaatcgctc cggcattgcg ggcggggcgc
     2341 gcctgccccg tttccggctg cgcgccgaga ttctgcttgg cgggattgtc gttgccgttc
     2401 atcatcgaaa tggcgatcag cagcaccaaa atcccgccgc cgacctgaaa cgaaccgacg
     2461 ctgatgccca aaaccttcag cagcgtaccg ccgatcagcg caaataccgc aatcacggca
     2521 aacacggcaa cggcggccgt ccgcgcgacc ttcctgcgct ccttcgtgct gtgcccgttg
     2581 gtcaggtcaa ggtaaagcga caacgcgcta aacggattaa tcagcaccaa aaaagccaca
     2641 atcagcttgc cgatttccat gcccaatccc attatttccc cctccttcaa acccgtgcgg
     2701 caggcatccg atgctgcaaa ttgccgccgc aacggatttt tccgttataa ttaaaaattc
     2761 aagcaatacg ccccatcata cccgaacgac ggtatcttta ccatcagaca aggatgcttt
     2821 tcatggcact gacacttgcc gacgtagaca aaatcgcccg actctcccga ctgcacctga
     2881 ctgcggcaga aaaagaaaaa tcgcttcaag aattaaacga cattttcgct atggtcgaac
     2941 agatgcaaac catcaacaca gacggcatcg aaccgatggc gcatccgcac gaggccgccc
     3001 tgcgcctgcg cgaagacgaa gtaaccgaaa ccgaccgcgc cgccgaatat caggcggttg
     3061 ctccggaagt acgcaaccgt ctgtatatcg taccgcaagt tatcgaagaa taatccgaat
     3121 atgcttcaga cggcatcagc aataccgccc gaagcccttt aaggatggaa gatttatgac
     3181 ccaatacaca ttgaaacagg caagcgtcct gttgcagtcc aaacagattt ccgccgtcga
     3241 actggcaagc gcataccttg ccgccatcgc cgaaaaaaat cccgccctca acggctacat
     3301 caccatcgac caagataaaa cccttgcaga agcccgtgcc gccgacgaac gtatcgcgca
     3361 gggcaacgcc tccgcgctta ccggcgtacc cgtcgcctac aaggatattt tctgccaaac
     3421 cggctggcgc agcgcgtgcg cttccaaaat gctcgacaac ttcatctccc cttacaccgc
     3481 caccgtcgtc caaaacctgc tcgacgaagg catggtaacg ctcggccgca ccaatatgga
     3541 tgagttcgct atgggttcga ccaatgaaaa ctcattctac ggcgcggcca aaaatccgtg
     3601 gaatccggaa cacgtccccg gcggttcgtc aggcggttcc gccgccgtcg ttgccgcgcg
     3661 ccttgcccct gccgcgctcg gttcggatac cggcggctct atccgccagc ctgcatcgca
     3721 ctgcggcatt accggcatca aacctaccta cggcacggtt tcccgcttcg gtatggtcgc
     3781 ctacgcctcc agcttcgacc aggccggccc gatggcgcaa actgccgaag actgcgcgat
     3841 tctgttgaat gcaataacag gtttcgaccc caaagactcc accagtctcg aacgtgaaaa
     3901 agaagactac acccgcgatt tgaaccaacc gctcaaaggc gtgaaaatcg gtctgcccaa
     3961 agaatatttc ggcgaaggca acagcgccga tgttctgacg gcattgcaaa acaccattga
     4021 tttgctgaaa gcccaaggcg cggaattgat tgaagtttcc ctgccgcaaa ccaagctgtc
     4081 catccccgcc tactacgtcc tcgcctccgc agaagccggc accaaccttt cacgttacga
     4141 cggcgtacgt tacggacacc gtgccgccca attcgccgat ttggaagaaa tgtacggcaa
     4201 aacccgcgcc gaaggtttcg gcagcgaagt caaacgccgc atcatgatcg gcacttatgt
     4261 actgtcgcac ggctactacg atgcctacta tctcaaagcc caaaaactgc gccgcctcgt
     4321 tgccgatgat tttcagacgg catttgcacg gtgcgacctc atcctcgcgc cgaccgcacc
     4381 cactgcagcc ccaaaaatag gagcggatgc ttcgccggtt gaaacctact tgagcgatat
     4441 ctacaccatc gccgtcaacc tcgccggact gcccgcattg accctgcccg caggcttcag
     4501 cggcggcgga ctgcccgtcg gcgttcagct tgtcggcaac tacttcgccg aagccaaaat
     4561 cctcggtgcg gcgcatcaaa tccaactcaa cagcgattgg cacggcaaac gacccgaatg
     4621 aagcagaacc gcacctttac cttccccgat tttcgcaccg tttacagcta tgcgccttta
     4681 tatcggctgc aacatttaaa atacacattg cgaaaatttt tcggaaaaaa agaaatttac
     4741 gccttcgagc agtttgtcaa cgcctcccct atccgtcagg ggctgttcct ccactgcccg
     4801 caaaatgcct atccgctgct gcgcgaattt gttgacaggc gttttaactg caaacgccgt
     4861 ttagatgcga tgacggcaga ttttctcatg gcggaaaaac tgttcggcac agacatcctg
     4921 caccaaatgg aagactaccg cttccatttg gtcttggcgc acctttcaga cggcatcagc
     4981 ttgtggctca accgcaacga caactgcgtc gaagaaggcg cgtggtcttt atctttgcgc
     5041 gacgaagcag gcaaccggct gtatatggcg actttcgcct ttgtcggcac acacctgctg
     5101 acagcctccg tacaagggcc tgcgggtgaa gaagccaaag acactgtccg ccgcataacc
     5161 aaacaacttc acggcttgcg tccccaacaa ctgatggtaa ccgcactgca atatttcgcc
     5221 gccgtactcg gcttggacgg cgcaatgggc attgcacaaa aacatcaggt caaactgcgc
     5281 tggaaactta aaaagcgcgt caaaatgaat tacgacgcat tctggcagga atacggcgca
     5341 agtttggaac gggacggcta ctggcatctc ccccaaaccc ccgcccgcaa agaccttacc
     5401 gacatcgaaa gcaaaaaacg ctcgatgtac cgcaagcgtt atgaaatgct ggacaacatg
     5461 gttgcagaga tgaaggacgg tctgaaaaca gaagcacgcg gcatttcaga cggcatccaa
     5521 acggaaaaac cgctccgccg gacagcctga cgcgaagact atcgaattga tattttagag
     5581 aaagaagctc ttatgacctg ggaaaccgta atcggcttgg aaatccacgt ccaattgaac
     5641 accaaatcca aaatcttcag cggcgcatcg accgcattcg gcgcagaacc caacgcgcac
     5701 gccagcgtag tggaatgcgc gctgccgggc gtactgccgg taatgaaccg agaagtcgtt
     5761 gaaaaagcca tcaaattagg cttggctttg gatgcgaaaa tcaaccggaa aaacgtgttc
     5821 gaccgtaaaa actacttcta tcccgactta ccaaaaggct atcaaatcag ccagttggat
     5881 ttgccgattg tcgaacacgg caaattggaa atcgtagtcg gcgacgatgt gaaaaccatc
     5941 aacgtaaccc gcgcccatat ggaagaagac gcgggcaagt ccgtgcatga aggcttgaac
     6001 ggcgcgaccg gtatcgacct gaatcgcgcc ggcacgcctt tattggaagt cgtatccgaa
     6061 ccggaattgc gctccgccgc cgaagccgtt gcctacgcca aagccttgca cagcttggta
     6121 acctggctgg acatttgcga cggcaatatg gcggaaggtt cgttccgcgt cgatgccaac
     6181 gtatccgttc gcccgaaagg tcaagcggaa ttcggcacgc gccgcgagat taaaaacctc
     6241 aattccttcc gtttcttgga gcaggcgatt aattacgaag cggaagcgca aatcgagatt
     6301 ttggaagacg gcagcaaagt gcagcaggcg acgatgctgt tcgacccaga aaaaggcgaa
     6361 acccgcgtaa tgcgcctgaa agaagacgcg caagactacc gctacttccc cgacccggat
     6421 ttgttgcccg tcatcatttc agacgctcaa atgcaaaaag ccaaagcaga aatgcccgag
     6481 ctgccgaaag aaatggcggc acgtttcgtg gcagattacg gcgtgtccga atacgacgcg
     6541 cgcctgctca ccgcaagccg cgcacaggcc gcctattttg aagaagccgc caaagcaagc
     6601 gggcaaggca agccgactgc caactggatg aacggcgaac tcgccgccgc gctgaacaaa
     6661 gccggcctgg aacttgccga cagcccgatt accgccccgc gcctcgccgc gctggtgggc
     6721 aaaatcgccg acggcacatt aagcagcaag ttagcgaaaa aagcctttga agccatgtgg
     6781 gcagaacccg aatccaccat tgccgaaatc attgaaaaac acggcttgca gcaaatgacc
     6841 gataccggcg cagttgaagc gatggtggac gaagtgctgg caaacaacgc caaagccgtg
     6901 gaacagttta aatccggcaa cgaaaaagcc ctgaatgcga ttgtgggaca agtgatgaaa
     6961 gccagcaaag gcaaagccaa ccccgcgcaa gttcaagaac tgattaaagc caaacttgcc
     7021 tgataagcaa gatgccgtct gaaacccaga tccgacgttc agacggcgtt ttcacagtct
     7081 gaccacatta aaacagcata aaaaacaata ttccatgaac cacaccgtta ccctgcccga
     7141 ccaaaccacc tttgccgccg gcgacggtga aaccgttttg gccgctgccg cccgtcaaaa
     7201 cctcaatctg ccccattcct gcaaaagcgg tgtctgcggg caatgcaaag ccgaactggt
     7261 cagcggcgat attcaaatag gcggacactc ggaacaggct ttatccgaag cagaaaaagc
     7321 gcaaggcaag attttgatgt gctgcaccac tgcgcaaagc gacatcagcc tcaacatccc
     7381 cggctacaaa gccgatgccc tacccgtccg caccctgccc gcacgcatcg aaagtatggt
     7441 tttcaaacac gatgtcgccc tcttgaaact tgccctgccc aaagcccctc cgtttgcctt
     7501 ctatgctggg caatacatcg atttactgct gccgggcaac gtcagccgca gctactccat
     7561 cgccaattcg cccgaccaag aaggcatttt ggaactacac atccgcaggc gcgaaaacgg
     7621 tgtctgctcg gaaatgattt tcggcagcga acccaaagtc aaagaaaaag gcatcgtccg
     7681 cgttaaaggc ccgctcggtt cgtttaccct gcaggaagac agcggcaaac ccgtcatcct
     7741 gctggcaacc ggcacaggct acgcccccat ccgcagcatc ctgctcgacc ttatccgcca
     7801 agacagcggc cgcgccgtcc atttctactg gggcgcgcgt catcaagatg atttgtatgc
     7861 cctcgaagaa gcacaagggt tggcatgccg tctgaaaaac gcctgcttca cccccgtatt
     7921 gtcccgcccc ggagagggct ggcagggaag aaaagggcac gtacaagaca tcgcggcaca
     7981 agaccacccc gacctgtcgg aatacgaagt atttgcctgc ggctctccgg ccatgaccga
     8041 acaagcaaaa aatctgtttg tgcaacagca taagctgccg gaaaacttgt ttttctccga
     8101 cgcattcacg ccgtccgcat cataattccc cggtataaaa aagattcagg ctttccgttc
     8161 ggaacacaaa aaacttcccg tccgtatttt ccccataaaa aatgccgtct gaagcccgat
     8221 tccggttttc agacggcata tgttttttcc tgttcaaggc gacagccgct cgcgtatcca
     8281 gccaccatcc agcaaacggt attggatgcg gtcgtgcagc ctgctcggcc tgccctgcca
     8341 aaactcaatc aaatcgggaa tcacaatata gccgccccaa tgcggcggac gcggcacgtg
     8401 caaaggatgt ttgagtccga ccgccgccgc ctttgccacc aataccgcct tgttcggaat
     8461 cacctcgctc tgcgcacttg cccacgcacc caaacggctc tgatacgggc ggctctcaaa
     8521 atattcgtcc gacaacttct ccgccagcct ttcaacacgc ccttccacgc gcacctgacg
     8581 ctccagctcc ggccaaaaaa acgtcatcgc cgcaaatgga tgagcatcca gcgaacgccc
     8641 cttgcggctg tgataattcg taaagaaaac aaaaccttca gaattaactt ccttcagcag
     8701 caccatacgg ctgttaggcc tgccgcgtcc gtcgaccgcc gccacattga ccgccgtcgg
     8761 ctcgttgacc tgtgcgcgta ccgcctcgtc caaccaccgc tcgaactgct cgatcggatt
     8821 gtcggcgcaa tcgccttccg acaattcccg tttgctgtaa tcttcccgaa tattgtgcaa
     8881 atccatttac cgctcctctt aatagtggat taacaaaaac ca
//
LOCUS       DAXIFD010000080         8780 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.080, whole genome shotgun sequence.
ACCESSION   DAXIFD010000080 DAXIFD010000000
VERSION     DAXIFD010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8780
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.080"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(519..1187)
                     /locus_tag="ACFOCN_001272"
     CDS             complement(519..1187)
                     /locus_tag="ACFOCN_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6970417.1"
                     /translation="MKNLAIFDLDNTLINTDSDHAWPQYLIKKGLVDAAETEAQNEKF
                     YRDYQNGCLDIDAFLKFHLAPLARYSKEELAEFHREFMAEYIIPHISPMQRMLVQSHQ
                     MAGDETLVISSTNEFIITPVCHLFGITNIIGTQLESGSDGRYTGNYIGTPSLKEGKIT
                     RLNQWLAERGETLESYGKTYFYSDSKNDLPLLRLVDEPVAVNPDAELEEEAKEKGWPV
                     LNFK"
     gene            complement(1184..1852)
                     /gene="hda"
                     /locus_tag="ACFOCN_001273"
     CDS             complement(1184..1852)
                     /gene="hda"
                     /locus_tag="ACFOCN_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HFC6970418.1"
                     /translation="MNQLIFDFAAHDYPSFDKFLGTENAELVYVLRHKHGQFIYVWGE
                     EGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQAL
                     LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA
                     SMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQ
                     QETQ"
     gene            complement(1957..2547)
                     /locus_tag="ACFOCN_001274"
                     /pseudo
     CDS             complement(1957..2547)
                     /locus_tag="ACFOCN_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743106.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(2505..2720)
                     /locus_tag="ACFOCN_001275"
     CDS             complement(2505..2720)
                     /locus_tag="ACFOCN_001275"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6970419.1"
                     /translation="MRIGNDLFVKRVQRIPGKLLVTSENPRYAPFEIDLSNTQDDIAI
                     IGRVEWYGRSIPHRKTSLCSATTAKSC"
     gene            complement(2929..3828)
                     /locus_tag="ACFOCN_001276"
     CDS             complement(2929..3828)
                     /locus_tag="ACFOCN_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6C domain-containing protein"
                     /protein_id="HFC6970420.1"
                     /translation="MPALTVTWMIYTKYLVYQIYLVIFCGVFMERIDLALNLVEERSR
                     LGYSRKNFAEQTGCSAESLRLYESGQVNIPADFLLAAVQLGVDIQFVFTGIHSANLNA
                     VSDDLNKKLDDAIGKSNVENQINGNVSNAVIASSGSVVHQINTQNHVIRTRVDSKPGK
                     EHITLEQASKLQQLVKQVAAAEEIAKRSPKSIRAIWASLNAHCKVPSYKLIALSDYDK
                     AETYLRKWLGRLSNTATSKNNDPDWRKKKYAYIKLNVKQLELEDWLKSYLEKNFSVES
                     LTELSDEDLQKTYAAVSTKKRKK"
     gene            3794..4123
                     /locus_tag="ACFOCN_001277"
     CDS             3794..4123
                     /locus_tag="ACFOCN_001277"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6970421.1"
                     /translation="MYIIQVTVKAGIKACKVSNGFYHGGIMQANEIYKSLEEKNISAR
                     MLASALGVTNQSVSEVIRNGRGSKRIAEAIAKVIQKDLVEVFPHYKKTDCRDKKIAEL
                     KEMLGVG"
     gene            4125..6104
                     /locus_tag="ACFOCN_001278"
     CDS             4125..6104
                     /locus_tag="ACFOCN_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HFC6970422.1"
                     /translation="MEYMDLKSLLNFGLPNMPRTVIGLRKKAQRDGWQTRRRQGKGGG
                     VEYALPAEIRAAIMKRQSDELAEKMPKTLPQVRPGTAMSAQALAEAAKLLNEKQRSVA
                     DARCAVVAAVLGIKYQYDCSAKAAVAQFLGLLAEGKLDAVTLGNLEKANDRSRSAKVG
                     ERTLDGWISAYLKAENATERLVALAPKTTKAVKPIESYGWLPMFMQFHNIPSAPKLAH
                     SYRRFVQWAEAENMPVNDVPNLSMVRRVWDKLPLIMQERGRKTGAAYKSLLPYVKRDW
                     GALKPNDVWIGDGHSFKAKVAHPVHGRPFKPEVTVIIDGCTRFVVGFSVSLAESCVAV
                     SDALRIGVKHFGLPIIYYSDNGGGQTGKTIDHEITGITSRLGIRHETGIAGNPQGRGI
                     IERWWKDNLIEMARQYETFAGAGMDSSTKNLMYRKMESAFNALEKGKDLTEEQQKYLK
                     KLPGWSRFIADVVKCIDEYNNRPHGELPRHPDGGHYSPKAYREMRLEQDGIAPDMLSA
                     QELATMFMPQEVRKVQRGWLDLFNNSYFSVELAEYHKDEVRVSYDLSDASAVNVFDMD
                     GKFITKAQANGNTREAFPTARIDQLAEKRRKGKIKRAENAIKLANAEVNPALEQAAVW
                     DELGYLGGNVIEAEYAVLPKTGTDDGIFLFEADRS"
     gene            6140..7054
                     /locus_tag="ACFOCN_001279"
     CDS             6140..7054
                     /locus_tag="ACFOCN_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6970423.1"
                     /translation="MKQINQALQQKLAEFKEKSGMSQTQLARGIGTSPASVSMYLNGT
                     YAEKGGNYETIEPKIEAFLEMQDSKAKREELVLGFVSTKTTRRIVEAMRNAHEGGEIS
                     VIYGQAGLGKTQAVKNYCEKNPAAILIEANPSFTALVLMRKLATAAKVSAMGSLNDLF
                     ESVSDRLRDSGHLIVVDEAENLPLRALEIIRRLHDETGCGLVLSGMPRLVANLRGKYG
                     ELVQLHSRVAGALNLGDTMPDAELEQIARATLPEADDETIAELVKHSNGNTRRMSKLM
                     RGSVRVANKNGIRMQAGIVKKYSTLIIR"
     gene            7144..7410
                     /locus_tag="ACFOCN_001280"
     CDS             7144..7410
                     /locus_tag="ACFOCN_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970424.1"
                     /translation="MQVLKKVDWKMFVARSFWQCVPVGLTAGVWCFVAGMALHSCAKE
                     PEPVAKEPTKVEAMERQADLEVKVWEGQYESMSVEEKMKGIVYE"
     gene            7519..7692
                     /locus_tag="ACFOCN_001281"
     CDS             7519..7692
                     /locus_tag="ACFOCN_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970425.1"
                     /translation="MSFGRRNTDWQAWGQHRRRATARMAQKSREREIEEYQAQFEDKD
                     GKGRLKTEGNKDE"
     gene            7685..7852
                     /locus_tag="ACFOCN_001282"
     CDS             7685..7852
                     /locus_tag="ACFOCN_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970426.1"
                     /translation="MNEKDLIEWLEDRGELMVMKKDGEGFVIAARAPDGMWKTAEAET
                     LAQAITLWEEV"
     gene            7916..8143
                     /locus_tag="ACFOCN_001283"
     CDS             7916..8143
                     /locus_tag="ACFOCN_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970427.1"
                     /translation="MKVYVFKISNENGKLKIELPEIPMGKQIDEVDLIAGLTTEFIAS
                     MLRDAQKDRRKFVIDASNQLAAIQTYQKIFN"
     gene            8158..8676
                     /locus_tag="ACFOCN_001284"
     CDS             8158..8676
                     /locus_tag="ACFOCN_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0042262 - DNA protection [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HFC6970428.1"
                     /translation="MAKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDK
                     KAAIEEEYAAKAAPMCAEIMSLTERVAAYCEAHKDELTENGKTKTVDFTTGLIKWRIR
                     PPSVKVTGVAAVLAWLSEKSAFAEFVRTKKEIDKDTILNQKECFSDGQVPGIKIVSGV
                     EDFVIEPSEQIL"
BASE COUNT         2262 a         1802 c         2516 g         2200 t
ORIGIN      
        1 tatttaccat actaaattta ataggtctca ttatcatatt taataaccac ttcatagtat
       61 agtggattaa atttaaacca gtacagcgtt gcctcgcctt gccgtactat ctgtactgtc
      121 tgcggctttg tcgccttgtc ctgatttttg ttaatccact ataaatgcag agtgggtgga
      181 aacactcact ttatggtttg ctacgctctg ctcaattagc aacccgataa cccaatatgg
      241 ataatagggt aattaatcca atctaatttg tcagcatctg ttaatttatt gcaaaataaa
      301 gtattgaatt atgtcgggtg caaatgacga aatataagtt tccgtgcgga cggatcaaga
      361 ttcccacttt cgtgggaatg acggtggaaa gattgttgtt tttcccgatg aattcctgtg
      421 ttttttgttt ttccggataa attcctgtgg ctttgagttt tttggatttc agcctcaatg
      481 ccgtctgaac gccgaattgg gcttcagacg gcattgcgtc atttgaaatt taaaaccggc
      541 cagccttttt ctttggcttc ttcttccagc tcggcatcgg ggttgacggc gacgggttcg
      601 tcgacgaggc gcagcagcgg caggtcgttt ttggagtcgc tgtaaaaata ggttttgccg
      661 tagctttcga gcgtttcgcc gcgttcggcg agccattggt tcaggcgggt gattttgcct
      721 tctttgaggc tgggcgtgcc gatgtaattg ccggtgtagc ggccgtcgga accggattcg
      781 agttgtgtgc cgatgatgtt ggtaatgccg aaaaggtggc agacgggggt gatgatgaac
      841 tcgttggttg aggaaatcac aagggtttcg tcgcctgcca tttggtggct ctgcactagc
      901 atacgctgca taggcgagat gtgggggatg atgtattccg ccataaattc gcggtgaaat
      961 tccgccagct cttctttgct gtaacgggcg agcggggcga ggtggaattt gaggaatgcg
     1021 tcgatgtcga ggcagccgtt ttggtagtcg cggtagaatt tttcgttttg cgcttcggtt
     1081 tcggcagcgt caaccaagcc ttttttgatg aggtattgcg gccaggcgtg gtcggaatcg
     1141 gtgttgatga gggtgttgtc gaggtcgaag atggcgaggt ttttcattgg gtttcctgtt
     1201 gtttcaaaag ctggcgcaaa agcggcaggg tgatgcgttt gcccatcgtg acggcgtagt
     1261 tgtccagcgt gtcgagcatc atcatcaggc tgtccatatc gcgccgccag tgtttgagca
     1321 ggtattcgaa aatttcggaa tcaacggtta cttggcgtgc cgccgccata ctggcgagcg
     1381 cgtcgatttt ttcttggtcg gtcaggggtt tgacttcgta aacgaggcag taagccatac
     1441 gcgtccgcaa atcttcgcgg atgacgagct gctggggcgt gtattccgaa ccgagcagca
     1501 aaaagccttt gccgctgttg cggaagcggt tgaagatgga aaaaagcagg gcttgttctt
     1561 cgttgcccag cttttcgact tgatcgacgg cgaggtattc cgcctcgaac gcggcatcgg
     1621 tcagcggcat ggaggcggca tcgatatagg cggcgttttt gccggcttcg agcgcctgtg
     1681 cgacccacgc ctgcaaaaga tggcttttgc ccgcgccttc ttcgccccaa acataaatga
     1741 attgtccgtg tttgtgtcgg aggacataga ccagttccgc gttttccgtg ccgaggaatt
     1801 tgtcgaaact cggatagtcg tgtgcggcaa agtcgaaaat aagctggttc acggttcggc
     1861 attccgaggg gtggtaaacg ggtttattgt acgttgtttt cgcgcgcctt tccaatttga
     1921 acgatgccgt ctgaaaacgg cttcagacgg catcgttcag tcgcaggcaa cgttgccgac
     1981 attgaggtgc atattgtgga acgtgttgag cgtgcttcgg tgtccgatgc tgatgatgat
     2041 gctgtcgggc agtttttgct ttaaggcgcg gtagagtgcg gcttcggccg gttcgtccaa
     2101 ggcggcggtg gcttcgtcga gcaggacgat tttgggcttg gaaagcaggg cgcggacgaa
     2161 ggcgacgcgt tgcagttcgc caggggagag tttgtgctgc cagtcggctg ttttgtccaa
     2221 tttgtcaatc agataaccca agcggcaggt gttcatggct tcggctaact cgggatgctg
     2281 tttgtcgatg tccggataac aaaccgcgtc gcgtaggctg ccttgcgccg tgtacgggcg
     2341 ttgcggcagg aagaggatgt cttgatgcgg cggacggctg actttgccgc tgctgccgaa
     2401 cggccaaagc ccagccagcg cgcacagcaa cgaagttttg ccgcaaccgc tcgggccgcg
     2461 tatcagcagg gaatcgccgc ttttgagttt gatgttgatg ccgctcaaca ggatttcgcc
     2521 gttgtggcgg aacagagcga cgttttcctg tggggaatac tccggccata ccactcaaca
     2581 cggcctatga tggcgatgtc gtcttgggta ttactcaaat ctatttcaaa cggtgcgtaa
     2641 cgtggatttt cagacgttac aagcagtttg cccggtatac gttgcacacg tttgacaaag
     2701 aggtcattgc ctatacgcaa gacatatagg ccgtcgcgcg gctcggtttc ggcgtggttg
     2761 attagaatgt ttataaaagg ctttaactag aaactgaaca tggaacttgt ataatagttc
     2821 catgtttgaa aaaatctttt aatatcatac atctaaaaaa acaaagcatc tgaagaccat
     2881 aagctaaaca tgaaacttga atttaaaggc ggagtttcat gtttaagcct attttttccg
     2941 ttttttagtc gatactgctg catatgtttt ttgcaaatct tcatcactta attcagtcag
     3001 gctttctact gagaaatttt tttcgaggta acttttcaac caatcttcaa gctcaagctg
     3061 ttttacattt aatttgatat aagcgtattt cttttttcgc cagtcgggat cgttgttctt
     3121 tgatgttgct gtattgctca acctacccag ccattttctg agataagttt ctgctttgtc
     3181 gtaatcgctc aatgcgatta gtttgtaact tggaacttta cagtgagcat tcagactagc
     3241 ccaaattgca cggattgatt ttggcgaccg tttggcaatc tcttctgctg cggcaacttg
     3301 tttaacaagt tgttgcagct ttgaagcttg ctcaagcgtt atatgttcct tgccgggttt
     3361 tgaatcgaca cgggttctga tgacgtgatt ttgggtatta atttgatgaa caaccgaacc
     3421 agatgaggcg ataacagcgt tactgacgtt gccgttaatc tgattctcaa cgtttgattt
     3481 gccaatagcg tcgtccaatt ttttattaag gtcgtctgaa acagcattta aatttgccga
     3541 atgaatgcct gtaaagacaa attgaatatc cacccctaat tggacagcag caagtaaaaa
     3601 gtccgcagga atgttgacct gcccgctttc atacagtctc aaactttctg cactacatcc
     3661 agtttgctca gcaaaattct ttcgagagta tccaagtcgg cttctctctt caactaaatt
     3721 caatgctaaa tcaatgcgtt ccataaaaac accgcaaaat attaccaaat atatttggta
     3781 taccaaatat tttgtgtata tcatccaagt aacagttaag gcaggcatta aagcctgtaa
     3841 ggtaagtaat ggattctatc atggaggcat tatgcaagcg aacgaaatct ataaatcctt
     3901 agaagaaaaa aatatatcgg caagaatgtt ggcttcggct ttaggggtaa ctaaccaatc
     3961 tgtttctgag gtcataagaa atggacgagg aagcaaaaga attgcggagg caatcgcgaa
     4021 agtgattcaa aaagatttag ttgaagtttt tccgcattac aagaaaacag attgtcgaga
     4081 caaaaagata gctgaattga aagagatgct cggagtgggt tgaaatggaa tatatggatc
     4141 tcaaaagcct gcttaatttt gggttgccaa atatgccaag aacagtaata gggctgagaa
     4201 aaaaagcgca aagggatggt tggcaaacga gaaggcgtca aggtaagggt ggtggtgttg
     4261 aatatgccct ccctgccgaa atccgagcag ccatcatgaa acggcagtcg gacgagctgg
     4321 cggagaagat gccgaaaacc ctgccccaag tcagaccggg gacggcgatg tcggctcagg
     4381 cactggctga agcggccaag ctgttgaacg agaaacaacg gtcggtggcg gatgcgcgat
     4441 gtgcggtggt ggcggcggtg ttggggatta aataccaata cgattgctct gccaaggctg
     4501 cggtggctca gtttttgggc ttgctggcag aaggtaaatt ggacgcggtc acgcttggga
     4561 acttggaaaa ggccaatgac cgcagccggt cggcgaaggt tggcgaacgt actttagacg
     4621 gctggatttc tgcttatttg aaagcggaaa acgcgacgga gcggttggtt gctttggctc
     4681 cgaagacgac gaaggcggtc aagccgattg aaagttacgg atggttgccg atgtttatgc
     4741 agtttcacaa tattccgtcc gcgccaaagc tggcgcacag ctaccgccgg tttgtgcagt
     4801 gggcggaagc ggaaaatatg ccggtcaatg atgtgcctaa cttgagtatg gtgcggcgcg
     4861 tttgggacaa gctgccgctg attatgcagg agcgcggcag gaaaacgggg gcggcttata
     4921 aatcgctgct gccttatgtg aaacgtgatt ggggggcttt gaagccgaac gatgtttgga
     4981 tcggcgacgg ccacagcttt aaggcgaagg tggctcatcc ggtacacggc aggccgttta
     5041 agccggaagt gacggtgatt attgatggtt gtacgcggtt tgtggtgggt ttttcggtgt
     5101 cgttggctga aagttgtgtg gcggtatcgg acgctctgcg tatcggggtc aagcactttg
     5161 gtttgccgat tatctactac tcggataacg gtggcggcca aaccggcaag acgatagacc
     5221 atgaaatcac gggtattacg tcccgattgg gtatccggca tgaaacgggt atcgcgggca
     5281 acccgcaagg ccgaggcatc atcgagcgat ggtggaaaga caatctgatt gagatggcgc
     5341 gccagtatga gacgtttgcg ggcgcgggga tggacagcag taccaagaac ctgatgtacc
     5401 gcaagatgga aagtgcgttt aacgctttgg aaaaaggcaa ggatttgacg gaggaacaac
     5461 agaaatattt gaaaaaactg ccgggctggt cgcgttttat cgcggatgtg gtcaagtgta
     5521 tcgacgaata caacaaccgc ccgcacggcg agctgccccg acatccggac ggcgggcatt
     5581 attcgccgaa ggcttatcgg gaaatgaggc tggaacagga cggtatcgcg ccggatatgt
     5641 tgtcggcgca agagctggcg acgatgttta tgccgcaaga ggtgcgaaag gtacagcgcg
     5701 gttggctgga tttgttcaac aactcttatt tttcggtgga gctggcggag tatcacaaag
     5761 acgaggtacg ggtcagctac gatttgagcg atgcgtcggc ggtcaatgtg tttgatatgg
     5821 acggcaagtt tatcactaag gcgcaggcca acggcaatac ccgcgaggct ttcccgacgg
     5881 ctcgtatcga ccaactggcg gaaaaacgcc gaaaaggcaa aatcaagcgg gcggaaaatg
     5941 caatcaagct cgcaaatgca gaagtcaatc ctgctttgga acaggctgcg gtttgggacg
     6001 agctgggata tttgggcgga aacgtcatcg aggcggagta tgcggtattg ccgaaaacgg
     6061 gcacggacga cgggattttc ttgtttgagg cggatagaag ttaaaacggt tttaaacctc
     6121 ttttaaaagg actaaaaaaa tgaaacaaat caatcaagca ttgcaacaaa aactggctga
     6181 atttaaagaa aaatcgggta tgagccaaac ccaactggca cgcggtatcg gtacttcgcc
     6241 ggcatccgtc agtatgtatc tgaacggtac ttatgcggaa aaaggcggca attatgaaac
     6301 catcgagcca aaaatcgagg cgtttttgga gatgcaggac agcaaagcga aacgcgaaga
     6361 gctggtgttg ggttttgtat cgactaagac gacacgccga atcgtggaag cgatgcgcaa
     6421 tgcgcacgaa ggcggcgaga tttccgttat ctacggtcag gcgggtttgg gcaagacgca
     6481 ggcggtcaaa aactactgcg agaaaaaccc tgcagccatc ttgattgagg ctaatccgag
     6541 ctttacggct ttggtcttga tgcgcaagtt ggcgacggcg gcgaaggtat cggcgatggg
     6601 cagcttgaat gatttgtttg aatcggtatc ggacagattg cgtgattcag gccatctgat
     6661 tgtggtcgat gaagcggaaa acctgccatt acgcgccctt gagattatcc gccgactgca
     6721 cgatgagact ggctgcggtt tggtgttgag cggtatgccc cgactggtgg cgaatttgcg
     6781 cggtaagtat ggcgagttgg tacagcttca cagtcgtgtg gcgggtgcgc tgaatctagg
     6841 tgatacgatg cccgacgcag agttggaaca gattgcgcgg gcaaccctac ccgaagccga
     6901 tgatgaaacg attgcggaac tggttaagca tagcaatggt aatacacggc gtatgagcaa
     6961 gttgatgcgc ggatcagtac gggtagcgaa taaaaacggt attcgaatgc aagcgggaat
     7021 cgtgaaaaaa tattcgacat tgattatccg ataggccgtc tgaaacggta agtctctgac
     7081 agggctatat attttttacc ctatgatttt aataagttat tgttttctaa aggaaaactc
     7141 aaaatgcaag ttttgaagaa agttgattgg aagatgtttg tggcacgctc tttttggcag
     7201 tgtgtgccgg ttggtttgac ggcgggcgtg tggtgttttg tggcgggaat ggcgttgcat
     7261 tcctgcgcga aagaacccga accggttgcg aaagagccga cgaaggttga ggcgatggaa
     7321 agacaggcgg atttggaggt caaggtatgg gaagggcaat acgagtcaat gagcgtcgag
     7381 gaaaaaatga aagggattgt ttatgagtga taagccaatt ttattgagcc ctgcggcgaa
     7441 aaaagaggct ttggcacggg cggtaaagga aatccgcgcg aaatatggcg ataaggcgat
     7501 tgtgaaagga tgtgtgaaat gagtttcgga cgacgtaata cggattggca ggcttgggga
     7561 caacaccgca ggcgtgcgac ggcgcgaatg gcgcaaaaaa gccgggagcg cgaaatcgag
     7621 gaatatcagg cgcagtttga agataaggac ggcaaaggtc gtctgaaaac ggaaggaaac
     7681 aaagatgaat gaaaaagatt taatcgaatg gctcgaagac cgtggcgagc tgatggtcat
     7741 gaagaaggac ggcgaaggct ttgtgattgc agcgcgtgcg ccggacggga tgtggaagac
     7801 tgccgaggcg gaaactttgg ctcaggcgat aactttatgg gaggaagtgt gatgtttaag
     7861 tttttgagaa accgcgcgaa agttgaagca attttaaaca agaaaggaaa gtgaaatgaa
     7921 agtgtatgtt tttaaaatta gtaatgaaaa cggtaagtta aagatagaac tccccgaaat
     7981 cccaatgggt aagcaaattg acgaagttga tttgattgct gggctaacca cggaatttat
     8041 tgcaagtatg ttacgtgatg cccaaaaaga tcgtcgcaaa ttcgtaatcg acgcatcaaa
     8101 tcaattggct gcaatccaga catatcaaaa aatcttcaat taaggaagga agagaaaatg
     8161 gctaaaaccc gaatcaaaca gcccgccatc gaagcggcac aagacaaaac ggaagttact
     8221 gcatttatcc gccaaatcgg cgacttgcag cgcgaagtca aacgcctgga aaccgaagcc
     8281 ggagacaaaa aagcggctat cgaagaagaa tatgccgcca aagccgcgcc gatgtgtgcc
     8341 gaaatcatga gcctgaccga acgtgtggcc gcctactgcg aagcgcataa ggacgagctg
     8401 acggaaaatg gtaaaaccaa aaccgtggac tttaccaccg gcctgattaa atggcgcatc
     8461 cgtccgccat ctgtcaaggt aacgggcgtg gccgccgtcc tggcgtggct ctcggaaaaa
     8521 tccgcctttg ccgagtttgt ccgcactaaa aaggaaatcg acaaagacac catcctgaat
     8581 caaaaagagt gtttttcaga cggccaagtt ccggggatta agattgtgag cggcgtggag
     8641 gattttgtga ttgagccgag cgaacaaatt ctataaaatc aacagcctga tttcaattca
     8701 gtgtgttgaa acgtgattga gcctacggag caggagcttg cctagccggt tcaaataggc
     8761 tttaacccat gatttaaagg
//
LOCUS       DAXIFD010000081         8742 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.081, whole genome shotgun sequence.
ACCESSION   DAXIFD010000081 DAXIFD010000000
VERSION     DAXIFD010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8742
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.081"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            50..240
                     /locus_tag="ACFOCN_001285"
                     /pseudo
     CDS             50..240
                     /locus_tag="ACFOCN_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581138.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            298..954
                     /locus_tag="ACFOCN_001286"
     CDS             298..954
                     /locus_tag="ACFOCN_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6970429.1"
                     /translation="MMKFKYVFLLACVVVSLSYRLNAAPMFNDNPVVYGKIKVQSWKA
                     RRDFNIVKQDLDFSCGAASVATLLNNFYGQTLTEEEVLKKLDKEQMRASFEDMRRIMP
                     DLGFEAKGYALSFEQLAQLKIPVIVYLKYRKDDHFSVLRGIDGNTVLLADPSLGHVSM
                     SRAQFLDAWQTREGNLAGKILAVVPKKAETISNKLFFTHHPKRQTEFAVRQIRQARAE
                     "
     gene            1080..2375
                     /gene="hisS"
                     /locus_tag="ACFOCN_001287"
     CDS             1080..2375
                     /gene="hisS"
                     /locus_tag="ACFOCN_001287"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HFC6970430.1"
                     /translation="MAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYG
                     YQQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVE
                     HNLLYNSPQKLWYMGPMFRRERPQKGRYRQFHQVGIEALGFEGPDIDAEIIAMSADLW
                     EKLGIREYLTLEINSLGNREERAAHRAALVEYLTRYEDKLDEDSKRRLKTNPLRVLDT
                     KNPDLQEICNAAPRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTV
                     FEWTTDKLGAQATVCGGGRYDGLIEELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNA
                     APDVYAMHQGERADLQVMKYAQALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIV
                     AQDELANGTVTLKDMNGAHGQQTVAAADLTNTLQQWKNA"
     gene            2376..3005
                     /locus_tag="ACFOCN_001288"
     CDS             2376..3005
                     /locus_tag="ACFOCN_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HFC6970431.1"
                     /translation="MAAHLEEQQELDNFKYFWKTTGKWLFALLILAALGYLGYTVYQN
                     RATSQNQEAAAVLANIVEKAQNKAPQSEINAELTKLQQSYPHSISTAQATLMAAATEF
                     DAQRYDVAEGHLKWVLSNQKDSLIQALAAQRLGVVLLQQKKYDAALAALDTPVEADFA
                     PLLMETKGDVYAAQGKSQEALKNYGQALEKMPQDSVGRELVQMKLDSLK"
     gene            3159..4616
                     /gene="der"
                     /locus_tag="ACFOCN_001289"
     CDS             3159..4616
                     /gene="der"
                     /locus_tag="ACFOCN_001289"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HFC6970432.1"
                     /translation="MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGH
                     GKVGSKPYLVIDTGGFEPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKI
                     IADRLRQSPRPVYLAVNKGEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEDIL
                     ETFPEPEAEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDF
                     EREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDA
                     TIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI
                     DGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNPPV
                     IVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPYENAEDKPKKKPLR
                     RVSLSNRIEKREGRKEEKNRFKKKTKVSVKKQFSK"
     gene            4647..5546
                     /locus_tag="ACFOCN_001290"
     CDS             4647..5546
                     /locus_tag="ACFOCN_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HFC6970433.1"
                     /translation="MWFKQISFYPLNKEKLPEADVLADKLAEAEFTHCQGLDWFSEGF
                     TAPVSFSPELVFPADFTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNVGRKEK
                     QELKEQITDDLLPRAFTRSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLE
                     ASLPNTKQSPSSLMTGWLLQGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVV
                     QHVKNGKTVTQLGLVWREQIAFILTQDFTLKRIQYLDVLQEEAESNGDDAAGLAFASQ
                     ILMAESVSIMLEELVSYLGGWQD"
     gene            5598..6014
                     /locus_tag="ACFOCN_001291"
     CDS             5598..6014
                     /locus_tag="ACFOCN_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MORN repeat-containing protein"
                     /protein_id="HFC6970434.1"
                     /translation="MLKHLAFLLPAMMFALPAASAVLTSYQEPGCTYEGDVGKDGKPA
                     GKGTWRCQDGRNYTGSFKNGKFDGQGVYTVAANREIFIEPFNSDSTKFRNMVLSGTFK
                     KGLAHGRFTVSQNGETLFIMKCENGMIKEVKLPKNK"
     gene            6080..6646
                     /gene="dcd"
                     /locus_tag="ACFOCN_001292"
     CDS             6080..6646
                     /gene="dcd"
                     /locus_tag="ACFOCN_001292"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HFC6970435.1"
                     /translation="MSIKSDKWIRRMSEEFGMIDPFEPNQIKEADGKRIISYGTSSYG
                     YDIRCANEFKIFTNINSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPR
                     NVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFF
                     ESDEICETSYKDRNGKYMGQTGVTLPKA"
     gene            complement(6710..7414)
                     /locus_tag="ACFOCN_001293"
     CDS             complement(6710..7414)
                     /locus_tag="ACFOCN_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248833.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HFC6970436.1"
                     /translation="MLRSILAASLLAVSFPTAAEALNYNIVEFSESAGVEAVQDTMSA
                     RFQVTAEGRDKNAVNAEFVKKFNNFTRKSKNGSFKTELVSRSAMPRYQYTNGRRIQTG
                     WEERAEFKVEGRDFDALNRFIADVQADAALEYTDFHVSRERRNEVIDQVSKDAVLRFK
                     ARAEKLAGVLGASGYKIVKLNLGHIGSHIAGGGAAQAKMLRAMPMAASVNMEGADSAA
                     PGVEEISISVNGTVQF"
     gene            7560..8742
                     /locus_tag="ACFOCN_001294"
                     /pseudo
     CDS             7560..8742
                     /locus_tag="ACFOCN_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678130.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT         2310 a         2337 c         2136 g         1959 t
ORIGIN      
        1 ctttattctt tatttaatca aattatttga ataagcgtag ggtgggcact tgctgcccac
       61 gcgttctgtt tcaagtttat tattgggtga atatttggaa tttgaagaaa acggtacaaa
      121 gattgctgcg gaaatcgaca gtgcatggca tttttgggcg cggcttgtcg gatttcaata
      181 aatggaaagt attatgcggg taatcggatt gtttggtttg ccaaaaaagc cgaaagctag
      241 gaataatttg acaagggcag cctgaaagat tttcaggctg ccctttatgt ggacaatatg
      301 atgaagttca aatatgtttt tctgttggcg tgtgttgtcg tttctttatc ttatcgtctg
      361 aatgctgcac cgatgtttaa cgataatcct gttgtttacg gaaaaatcaa agtgcagagt
      421 tggaaagcgc ggcgggattt caatattgta aagcaggatt tggatttttc ctgcggggcg
      481 gcttcggtgg cgacgctttt gaacaatttt tacgggcaaa cgctgacgga agaagaagtg
      541 ttgaaaaagc tggataagga gcagatgcgc gcgtcgtttg aggatatgcg gcgcattatg
      601 ccagatttgg gttttgaagc gaaaggctat gccctgtctt tcgagcagct cgcgcagttg
      661 aaaatccccg tcatcgtgta tctgaaatac cgtaaggatg atcatttctc ggtattgcgc
      721 ggtatagacg gcaatacggt tttgcttgcc gacccgtcgc tgggtcatgt ttcgatgagc
      781 agggcgcagt ttttggatgc ttggcaaacc cgtgagggaa atttggcagg taagattttg
      841 gcggtcgtgc cgaaaaaagc cgagacaatt tcaaataaat tgtttttcac acatcatccc
      901 aagcggcaga cagagtttgc agtccgacaa atcaggcaag cacgtgcaga gtaagtcaaa
      961 tgccgtctga aaactgtttc agacggcatt ttacccgtcc gcaaaccacc cccaacctca
     1021 caaaccctta aaaatccgct ataatcgccc gcaatttgat ttaagcattc ttacttgaaa
     1081 tggcacaaaa aatccaatcc gtcaaaggca tgaacgacct tctgcctgtc gagcaaaaag
     1141 atttcaaact gacggctgcg ttttggcagg cgtttgagga tacggtaaac cgctggacgc
     1201 gcgcttacgg ctatcagcaa atccgtacgc cgattgtcga gcaaaccggt ttgtttgtcc
     1261 gctccatcgg cgaagaaacc gatgtggtcg gcaaggaaat gtacaccttt tccgattcaa
     1321 acgattcttt gagtttgagc ctgcgtccgg aaggtacggc ttcttgtctg cgtgcggtgg
     1381 tcgaacacaa ccttctgtac aacagcccgc aaaagctgtg gtatatgggg ccgatgttcc
     1441 gccgcgagcg tccgcaaaaa ggccgttatc gtcaattcca tcaggtcggt atcgaggctt
     1501 tgggttttga agggccggat atcgatgcgg aaatcatcgc gatgtctgcc gacttgtggg
     1561 aaaaattggg tatccgcgaa tacctgactt tggaaatcaa tagcttaggc aaccgtgagg
     1621 agcgagcggc acaccgtgcg gcgttggttg aatatttgac acgctatgaa gataaattgg
     1681 acgaagacag caaacgccgt ctgaaaacca atcctttgcg tgttttagat acgaaaaacc
     1741 ctgatttgca ggaaatctgc aacgccgcgc cgcgtttggt ggattatttg ggcgaggctt
     1801 cgcaaaacca ctatgcacgc ttcaaggcga tgttggacgg tttgggtatc caatatattg
     1861 aaaatccgcg cttggttcgc ggtttggatt attacaatca gacggttttt gagtggacga
     1921 ccgacaaact cggcgcgcag gcaactgtgt gcggcggcgg ccgttacgat ggtttgattg
     1981 aggaacttgg cggcaaacct gcgccgtcca tcggctttgc gatgggcatc gaacggctgc
     2041 tgcttttggt gagcgaatac ggctcgctgg aagtgaacgc tgcgcctgat gtctatgcaa
     2101 tgcaccaagg cgaaagggcg gacttgcagg tgatgaaata cgcgcaagcc ttgcgcgcgc
     2161 aaggtttcaa tgtaatgcag cattccggct atcaaagcct gaaagcacaa atgaaaaaag
     2221 ccgacaacag cggcgcgcgc tttgccctga ttgtggcgca agacgaactg gcgaacggta
     2281 cggttacgct caaagacatg aacggcgcac acggtcagca aactgtcgcc gccgctgatt
     2341 tgacaaacac tttacaacaa tggaagaacg cataaatggc agcccatttg gaagaacaac
     2401 aagagttgga caactttaaa tatttttgga aaaccacggg caaatggctg tttgccctgc
     2461 tgattttggc ggcgctcggc tacttgggat acacggttta ccaaaaccgt gcgacttccc
     2521 aaaatcagga agcggcggcg gtgctggcaa acatcgtgga aaaggcgcaa aacaaagccc
     2581 cgcaaagcga aatcaatgcc gaattgacca aactccagca aagctacccg cattccattt
     2641 ccaccgccca agccacgctg atggcggcgg caaccgaatt tgacgcacag cgttacgatg
     2701 ttgccgaagg ccatttgaaa tgggtgttgt ccaaccaaaa agacagcctg attcaagcgt
     2761 tggcggcgca gcgtctgggc gttgtgttgt tgcaacaaaa aaaatacgat gccgcgcttg
     2821 ccgcgctcga tacgccggtt gaagcggact tcgcccccct gctgatggaa accaaaggcg
     2881 atgtctatgc cgcacaggga aaaagccagg aagccttaaa aaactacgga caggctttag
     2941 aaaaaatgcc tcaagattct gtcggtcgcg aattggttca aatgaaactt gattcgctga
     3001 aataaatgcc gtctgaaatg ctgtccatta tttatcagac ggcattttac cctccctctt
     3061 tatggcctct tgccgtgaag aacctattta ccgtgtccaa cggacacctg ctcgtgttca
     3121 gttctcccga acggcacttg acacagaaag acccaataat gaaacccacc atcgcgcttg
     3181 tcggccgccc taacgtcggc aaatctactt tattcaaccg tttgacgcgc accaaagacg
     3241 cactcgtaca cgacctgccc ggcctgaccc gcgaccgcca ttacggacac ggcaaagtcg
     3301 gcagcaaacc ttatttggtc atcgataccg gaggtttcga gccggttgtg gacagcggca
     3361 ttttgcacga aatggcaaaa caaaccttgc aggctgtcga tgaagctgat gcggttgtgt
     3421 ttttggtgga cggccgtacc ggcctgaccc cgcaagacaa aatcattgcc gaccgcctgc
     3481 gccaaagccc gcgccctgtt tatctggcgg taaacaaagg cgaaggcggc aacagggccg
     3541 tgcttgccgc cgagttctac gaacttgctt tgggcgaccc ttatgttatt tcaggtgcgc
     3601 acggcgatgg cgtgtattat ctgattgaag atattttgga aaccttccca gagccggaag
     3661 ccgaagaagc cgatgcaaaa catcccgtct ttgccgtcat cggccgtccg aacgtcggca
     3721 aatccacact ggttaacgcc atcctcggcg aagagcgcgt gattgctttc gatatggcag
     3781 gcacgacacg cgacagcatc cacatcgatt tcgaacgcga aggcaaaccg tttaccatca
     3841 tcgataccgc aggcgtgcgc cgtcgcggca aagtggatga agcagtagaa aaattctccg
     3901 ttatcaaagc gatgcaggcg gttgaagcgg caaacgtcgc tgttttggta ttggacgcgc
     3961 agcaggacat cgccgaccaa gatgcgacga ttgccggttt tgctttggaa gcaggccgcg
     4021 ccttggtggt tgccgtcaac aaatgggacg gcatcagcga agagcgtcgc gagcaagtga
     4081 aacgcgatat caaccgcaaa ctgtatttcc tcgattttgc caagttccac tttatttccg
     4141 cattgaaaga gcgcggtata gacggtttgt ttgacagcat tcaggctgcc tacaacgcgg
     4201 cgatgattaa gatgccgacg ccgaaaatca cgcgcgtatt acaaagcgcg atcgagcgtc
     4261 agcaaccgcc gcgtgccggc ttggtgcgtc cgaaaatgcg ttatgcccac caaggcggca
     4321 tgaaccctcc cgtaattgtg gtacacggca attcgctgca cgcgatttcc gacagctata
     4381 cgcgctatct gacccaaacg ttccgcaaag ccttcaacct gcaaggcacg ccgttgcgga
     4441 ttcaatacaa tgtttcggaa aacccgtatg aaaatgcgga agacaaaccg aagaaaaaac
     4501 cgctgcgccg cgtcagcctg agcaaccgta ttgagaaacg cgaaggccgc aaagaagaga
     4561 aaaaccgctt caagaagaaa accaaagtca gtgtgaaaaa acaattcagc aaataattcc
     4621 cgacatttca aacaatagga aacattatgt ggttcaagca gattagtttt tatccgctca
     4681 acaaagaaaa gctgcctgag gcagacgtac ttgccgacaa acttgctgaa gctgaattta
     4741 cccattgcca aggcttagac tggttcagcg aaggctttac cgcaccggtt tcattctccc
     4801 ctgaactcgt tttccctgcc gactttacct tgcgcgtcgc cctgaaaaaa gaagaaaaag
     4861 tcctgcctgc cggcgtcatc cgcgatattt tggaagagaa ggtagcggaa atccaaaaca
     4921 atgaagcccg caatgtcggc cgtaaagaaa aacaagagct taaagagcaa attacagacg
     4981 acctgctgcc ccgagcgttt acccgcagca gccgtacaga agcggtgttt aacacccgcc
     5041 acggctacct gctcgtcaat aacgcggctt ccgccaaagc agaaaacatc ctgaccaagc
     5101 tgcgcgaagc tttgggcggt ttggaagcct cgctgccgaa taccaagcaa tcgccctctt
     5161 ccttgatgac cggctggctg ttgcaagggc attgcgaagg cggttttgaa ttggacagcg
     5221 attgcgaact caaaggcacg ggcgatattg ttcccgtcgt caaagtatcc aaacaagatt
     5281 taaccgccga cgaagtggtt caacacgtca aaaacggtaa aaccgtaacc cagctcggtt
     5341 tggtttggcg cgaacaaatc gcctttatcc tcactcaaga cttcacactc aagcgcatcc
     5401 aatacctcga cgtattgcag gaagaagccg aaagcaacgg cgacgatgcc gccggtctcg
     5461 ccttcgcctc gcaaatcctg atggcggaat ccgtcagcat catgttggaa gagctggttt
     5521 cctatttggg cggctggcaa gattgatttt tcagacggct tttataccgt cagccaaaat
     5581 ccaatggaat aacccttatg cttaaacatc tcgcattcct actgcccgcc atgatgttcg
     5641 ccctccccgc cgcgtccgcc gttctgactt cctatcaaga acccggctgc acctacgaag
     5701 gcgatgtcgg caaagacggt aaacccgccg gcaaaggcac atggcgctgc caagacgggc
     5761 gcaactatac cggttcgttt aaaaatggca aattcgacgg acaaggcgtt tataccgttg
     5821 ccgccaaccg cgaaatattt atcgaaccgt tcaattccga cagtaccaaa ttccgcaaca
     5881 tggtactctc gggcacattc aaaaaaggct tggcacacgg cagatttacc gtctcgcaaa
     5941 acggcgaaac cctcttcatt atgaaatgcg aaaacggcat gattaaagaa gtgaagctgc
     6001 ccaaaaacaa ataagccccg ttttcagacg gcatccccca atgctttgtc cgaacactgc
     6061 aagaaacaag gaaaacatta tgagcatcaa gtccgacaaa tggatacgcc gaatgagcga
     6121 agaattcggc atgatcgacc ctttcgagcc gaaccaaatc aaagaagccg acggcaaacg
     6181 catcatctcc tacggtacgt ccagctacgg ctacgacatc cgctgcgcaa acgaatttaa
     6241 aatcttcacc aacatcaaca gcaccatcgt cgatcccaaa aacttcgacc cgaaaaactt
     6301 cgttaccgtt gaagacgact gctgcatcat cccgcccaat tccttcgcac tggcgcgcac
     6361 ggtcgaatat ttccgcatcc cgcgcaacgt cctgaccgtc tgcttgggca aatccaccta
     6421 cgcccgctgc ggcattatcg tcaacgttac cccgttcgaa ccggaatggg aaggctacgt
     6481 taccctcgaa ttttccaaca ccacccccct gcccgccaaa atctacgcag gcgaaggtgt
     6541 ggcgcaagtc ctcttcttcg agagcgacga aatctgcgaa acctcataca aagaccgcaa
     6601 cggcaaatat atggggcaaa ccggcgttac cctgcccaaa gcctgaaata taaatgccgt
     6661 ctgaaccctt atcgtcgggt ttcagacggc atttgccgtt cacctcaaat cagaactgaa
     6721 ccgtcccatt gacgctgatg ctgatttcct ccacaccagg cgcggcggaa tccgcaccct
     6781 ccatattgac gcttgccgcc atcggcatgg cacgaagcat ttttgcctga gcagctcccc
     6841 ctcccgcgat atggctgccg atgtgtccca aatttaattt gacgatttta taaccggacg
     6901 cacccaaaac gcccgccaac ttttcggcac gcgccttgaa acgcaaaacg gcatccttgc
     6961 tgacctgatc gatgacctcg ttgcggcgtt cgcgcgacac atggaaatcc gtatattcca
     7021 acgcggcatc tgcctgaaca tcggcaataa aacggttcaa cgcatcaaaa tccctaccct
     7081 cgaccttaaa ttccgcacgc tcctcccaac ctgtttgaat gcgtctgccg ttggtatatt
     7141 gatagcgcgg catcgcactg cgcgatacca attcggtttt aaagctacca ttttttgatt
     7201 ttctggtgaa attgttgaat tttttaacaa actcggcatt gacggcattt ttgtcccgtc
     7261 cttccgccgt cacttggaaa cgtgcggaca ttgtatcctg aaccgcctcg acacccgccg
     7321 attcagaaaa ttcgacaata ttgtaattca atgcttcagc cgccgtcgga aaagataccg
     7381 ccagcaggga agccgccaaa atagaacgca acatatccgt atccttactt ataaaaccgc
     7441 caatctagca tatcggcgcg ctaaattgca ttagcgtaag gcaacaattt aaatattcgg
     7501 tctgcgtctg tcttataata accgcctttc cgatacggaa tcccactatg cccgaaccct
     7561 tgcacgtcct cgtcatcccc tcatggtatc cgcaatccga acaggatgtg gacgggattt
     7621 ttttcaaaat caggcactgg cattgcagag gaaaggcatc aaaaccgccg tgcttgcacc
     7681 gatgttccgc tacttgcgga aagaaacagc aagcatcctg accggcctta cggttttgca
     7741 aaatatcggc aaagcggttt ggacatctat gcatggcacg gcatatattt cttcccccgc
     7801 tttccgttca tcgacatcga ctgcatccgc tgggtgtgtg cgggtttgaa agctttcaaa
     7861 cactacatcc gcgaaaacgg gctgcccgac ctgattcacg cccaccgcat gaactatgcc
     7921 ggcatactcg cccaaaaaat ttcccaaaaa tacggcatcc cctatgtcgt cacggaacac
     7981 agcagcacca tcacgcgcgg tctgatccgt ccccaccaat ggcagccgat ggaaaaagca
     8041 gcggcgcacg cctccgcact gctcgctgtc agccgccatt tcgcacacgt cctgcaacac
     8101 aaatacggct gcgaatggca gtacctcccc caacatactg ggcggaatat tcaaccgacc
     8161 gtttgaacaa agagaaaaaa acaacaaacc gcatttcgtg ttctgcaccg tctcgcacct
     8221 tcgccgtctc aaaggacacg atgtcctact cactgccttt gcccgggcgt tggcacaatg
     8281 cccgcaactg cgcctgaaca tcggcggcag cggacaggaa gaacagcggc tgaaacagca
     8341 ggcggcagac ttgggcatta cccatgccgt tacatttttg ggcgcattgc agcccgaagc
     8401 agtcttggat ttgatgagga acagcgacgc attcgtcctt gccagccgca ccgaaacctt
     8461 cggcgtagtc tatatcgaag cactgtccca aggattgccc gtcattgcaa cacgctgcgg
     8521 cggtgcggaa tctattgttt cagacggcaa cggatatttg gttcctgttg acgacgacga
     8581 tgcccttgcc gacgcactca tcaaaatgta tgaacaccac tctgattttg aacctgcccg
     8641 acttagggaa aactgtctga acgaatttgg cgaaaatgcc gttataggca ggttgatcgg
     8701 cattttccga caggcaatcg cagaatacgg taagaaaata cg
//
LOCUS       DAXIFD010000082         8608 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.082, whole genome shotgun sequence.
ACCESSION   DAXIFD010000082 DAXIFD010000000
VERSION     DAXIFD010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8608
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.082"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(369..445)
                     /locus_tag="ACFOCN_001295"
     tRNA            complement(369..445)
                     /locus_tag="ACFOCN_001295"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(409..411),aa:Asp,seq:gtc)
     gene            complement(478..553)
                     /locus_tag="ACFOCN_001296"
     tRNA            complement(478..553)
                     /locus_tag="ACFOCN_001296"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(518..520),aa:Val,seq:tac)
     gene            complement(623..2599)
                     /locus_tag="ACFOCN_001297"
     CDS             complement(623..2599)
                     /locus_tag="ACFOCN_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFC6970437.1"
                     /translation="MNEFSLAPIVVVLLVSVITVILCRKFNIPSMLGYLLVGFLAGPG
                     MLSLIPKSHATDYLGEIGIVFLMFSIGLEFSLPKLRAMRRLVFGLGGLQVGVTMLSVM
                     GILMLTGVPFNWAFAVSGALAMSSTAIVSRILSEKTELGQPHGQMAMGVLLMQDIAVV
                     PLMILIPALAGGGDGNIWAALGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSEL
                     FMINVLLVTLGVAYLTELEGLSMALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFF
                     FITVGMKLDIQALIGGWRQVLMLLAMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQ
                     GGEFGFVMLAIAGQLDMVSPEWEQAATAAVLLSMIIAPFLLGGSDALVGRLVKSSWDM
                     KSLDLHSMLVETMSKSDHVLIVGFGRGGQTVGRVLAQEDIPYFALDLDIARVQVARSA
                     GEPVSFGDAKRREVLEAAGLGRAKMVVLTLNNMHETQHVLDNVLSMYPNMPVYVRATN
                     DDYVKTFTDIGAEEAVSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEG
                     LFVGSDDEAGFGENGETVRHAFPLAAEAYAVGKTVGTLPMAAYGIKLLFVRRRTGRIE
                     NPDASFTLEGGDVLVVAGKKEEIISFENWSLQGI"
     gene            2748..3587
                     /locus_tag="ACFOCN_001298"
     CDS             2748..3587
                     /locus_tag="ACFOCN_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HFC6970438.1"
                     /translation="MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPG
                     GETVIRDISALLGKPLVAPAKTQAKALARIDETACIGCTACIRACPADAIMGAGKLMH
                     TVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLK
                     RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDR
                     LAAADNRKDYQAKQIAEARERAELRRAQRDMKYGSDSEKAAALEYLKQYKAKQDAAQN
                     TAS"
     gene            3786..4817
                     /gene="gap"
                     /locus_tag="ACFOCN_001299"
     CDS             3786..4817
                     /gene="gap"
                     /locus_tag="ACFOCN_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6970439.1"
                     /translation="MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETN
                     AHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGA
                     FTSKEKAKIHLESGAKKVLISAPGGDDVDATVVYGVNDSVLTADMTVVSNASCTTNCL
                     SPVAKVLSESVGIVKGAMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKA
                     VGLVLPELKGRLDGLAIRVPTVNVSLVDLSFQAARDTTVEEINALMKAASEAGALKGV
                     LGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMIKVFAWYDNEWGFSCQMLNTARRM
                     FGLEVRPLK"
     gene            complement(5065..5790)
                     /gene="aat"
                     /locus_tag="ACFOCN_001300"
     CDS             complement(5065..5790)
                     /gene="aat"
                     /locus_tag="ACFOCN_001300"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HFC6970440.1"
                     /translation="MRIPLLAPDNYAFPDPAYALARCDGLVGVSRDLDAGRLLEAYRN
                     GVFPWFLRDGWFFWYAVGPRAVIVPERLHVPRSLEKTLRNCSYRVTVNGCFAEVVAHC
                     AAAVRPNQDGTWIAPEFQTAYLKLHEMGYAHSFECHYPDENGKTRLAGGFYGVQIGRV
                     FYGESMFALQPDASKIAFACAVPFLASLGVELIDCQQDTGHMRRFGSELLPFADFAER
                     LRMLNAVPLKEEIGRREVACKGL"
     gene            complement(5860..6294)
                     /gene="fur"
                     /locus_tag="ACFOCN_001301"
     CDS             complement(5860..6294)
                     /gene="fur"
                     /locus_tag="ACFOCN_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HFC6970441.1"
                     /translation="MEKFSNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRI
                     LLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVT
                     EFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR"
     gene            6521..6898
                     /locus_tag="ACFOCN_001302"
     CDS             6521..6898
                     /locus_tag="ACFOCN_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6970442.1"
                     /translation="MNKTLILVLSALFSLTACSVERVSLFPSYKLKIIQGNELEPRAV
                     AALRPGMTKDQVLLLLGSPMLRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLV
                     RAEGDALQNAAEALRAKQNADKQ"
     gene            6908..7717
                     /gene="dapB"
                     /locus_tag="ACFOCN_001303"
     CDS             6908..7717
                     /gene="dapB"
                     /locus_tag="ACFOCN_001303"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HFC6970443.1"
                     /translation="MIPLKIAIAGVNGRMGRVLVEAVNNHPDTVLSGALEHSGSEALG
                     LDAGYAVGLKTGIAISDDVDTVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTG
                     FDDAGKAAIQAAGEKTGVVFAANFSVGVNLTFHLLDTVARVLNEGYDIEIIEGHHRHK
                     VDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHT
                     ALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR"
     gene            complement(7981..8391)
                     /locus_tag="ACFOCN_001304"
     CDS             complement(7981..8391)
                     /locus_tag="ACFOCN_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970444.1"
                     /translation="MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFP
                     QEIPTPNYTDWVKIKFKQFSYLKFIYGYATKNQDKNIKNVLELGELKQDDEILDYGGA
                     LEVIGSRYDLPTGFSIDIVCREIELEFLDQESFN"
BASE COUNT         2260 a         2706 c         1918 g         1724 t
ORIGIN      
        1 gtcttttcta aaatatgcag atattcgaat atcgaatttg ccttatgatt acggttttct
       61 gtcttatctg ccttaaaacg ccggtattcc gtttgaacca aattatattt gccgaaacac
      121 tcaaaaatct cccttacctg cccgacagac atcaagcctt cgttgttgta gctgagaaaa
      181 atatattgaa agtccgcatc cctaatcaaa gcctcaaata ccggaaccac atccgatttt
      241 gagcaagtcc gcgctaaaac acatcgtaca gcgcaaaacc ggatgggaat ggcaaaatcc
      301 ggaaacaaac atttttcaaa gcatacaaac aaaaaaatac caaccggagg ttggtattcc
      361 ttaacttttg gcgcggcgga cggggctcga acccgcgacc cccggcgtga caggccggta
      421 ctctaaccaa ctgagctacc accgcgcatc cattgtttgc aacaatgaaa gaaaacttgg
      481 tgggtgatga cggagtcgaa ccgccgacat tctgcttgta aggcagacgc tctaccaact
      541 gagctaatca ccctttcgat ttgcgaaagc gttattaaac caaataaccg gaaatggcgc
      601 aagccttatt tcggcatttc atttatattc cctgcaaact ccagttttca aaagagataa
      661 tttcttcttt tttgcctgcg accaccaaca cgtcaccgcc ttccaatgta aacgaggcat
      721 ccgggttttc aatccggccg gtgcggcggc ggacgaacaa gagtttgatg ccgtaagccg
      781 ccatcggaag cgtgccgact gttttgccga cggcgtatgc ttctgcagcc aaaggaaagg
      841 cgtgacggac ggtttcgccg ttttcgccga atcctgcctc atcatcacta ccgacaaaca
      901 gtccctccaa cgcggcataa cggctgtggc ggatatttgc catcgtctga tagacgtgcc
      961 gatacgacgc gccgttgcct aacatcgcat agcctgccag cacgagtccg gtttctttgg
     1021 tgtccgacac ggcttcttcc gcacctatat cggtaaacgt tttcacataa tcgtcgttgg
     1081 tggcgcgcac atatacgggc atattgggat acatggacag cacattgtct aaaacgtgtt
     1141 gcgtttcgtg catattgttg agcgtcagca ccaccatttt cgcccgtccc agaccggcgg
     1201 cttccaatac ttccctgcgt ttcgcatcgc cgaacgacac cggttcgccc gcacttctgg
     1261 caacctgcac ccgcgcaatg tccaagtcga gcgcgaaata cggaatatcc tcttgggcaa
     1321 ggacgcgtcc gaccgtctgc ccgcccctgc cgaagccgac aatcagcaca tggtcggact
     1381 tgctcatggt ttctaccagc atactgtgca gatcgagcga cttcatgtcc cagcttgact
     1441 tgaccaaacg cccgaccagc gcatcgctgc cgcccaagag gaagggcgcg ataatcatcg
     1501 acagcagaac cgccgccgtc gccgcctgtt cccattctgg cgaaaccata tcaagctgcc
     1561 cggcaatggc cagcatcacg aagccgaact cgccgccctg cgcgagatac aaagccgttt
     1621 tgaggctgtc gccgaccgaa tgtttcattt tgaaggcaat ggcaaacaca accagtgcct
     1681 tcaacaccag cagcattgcc aacagcatca atacctgccg ccagccgccg atcaatgcct
     1741 gaatgtccag cttcatgccg accgtgataa agaaaaagcc gagcaaaata tcgcggaacg
     1801 ggcggatgtc gtcttcgact tggaaacggt attccgtttc cgaaagcagc atgccggcaa
     1861 cgaatgcgcc caacgccata gacaaacctt ccagctcagt cagataagcc acacccaagg
     1921 ttaccagcag cacattgatc ataaagagtt cggacgattt gcgttttgcc accatcctga
     1981 accatcgcga cataattttg ctgccgacga aaaacagcag ccccagcgtc agcagcattt
     2041 ttgcaaacgc caaacccaag gccgcccaaa tatttccgtc ccctccgccc gccagcgcgg
     2101 gaatcagaat catcagcggc acgacggcga tgtcctgcat cagcagcacg cccatcgcca
     2161 tctgaccgtg cggctgcccc aattccgtct tttccgacaa aatccggctc acaatcgccg
     2221 tggacgacat cgccaacgcg cccgacacgg caaacgccca attgaacggg acgcccgtca
     2281 gcatcagtat gcccattacc gacagcatcg taacgccgac ctgcaaacca cccagcccga
     2341 acaccagccg cctcattgcc ctcagcttgg gcagcgaaaa ctccaagcct atactgaaca
     2401 tcaggaacac aatcccgatt tcgcccaaat aatccgtcgc atggcttttc ggaatcaggc
     2461 tgagcatacc gggccccgcc aaaaagccca ccagcaggta gcccagcatg gagggaatgt
     2521 tgaacttgcg gcacaggatc accgtaatga ccgacaccag caaaacaacc acaatagggg
     2581 caagcgaaaa ttcgttcata ggccgtccga acaggaaaat acagaaaaat gccgtctgaa
     2641 acggcatacg ccgccgcatt ataacaaaac accgcgcacc atccgaaacg ggcgcggcat
     2701 acaattctgc taaaatacgc cctttcgatt ttgagccgca caccgacatg accgccacag
     2761 ccgccgccat agaccgcctg cttccccaaa cccaatgccg cgaatgcggc tacgacggct
     2821 gcctgcccta tgcacaggca gtcgcaacag gcgaagcgta caacctctgc gccccgggcg
     2881 gagaaaccgt cattcgggac atttccgccc tgctcggcaa accccttgtc gcacctgcca
     2941 aaacccaagc caaagcactc gcccggatag acgaaaccgc ctgtatcggc tgcaccgcct
     3001 gcatccgcgc ctgccctgcc gatgccatta tgggcgcggg caaacttatg cacaccgtca
     3061 tcgccgacga atgcaccggc tgcggactct gcgtcgcccc ctgccccgtc gactgcatcc
     3121 atatgcagcc cgttgccgac accgtcctgc cccgcgcgcg tcgcttcagc ctgtccgccg
     3181 acagccgttt tgccgccgcc gaacacgcgc gcgcgcgcta cctcaaacgc aacgaacgca
     3241 aacagcgcga agccgacgaa cgcaaggcca tgcttgccga acgcgaagcc gccgtccgca
     3301 acgcgcgtcc gcaaacaccc gacacaccga aaaaaccggc gtttaaccct gccgacctca
     3361 tcgccaaagc catggcaaaa gcgcaaaccc aacaagaccg cctcgccgcc gccgacaacc
     3421 gcaaagacta tcaggcgaaa cagatagccg aagcccgcga acgcgccgag ttgcgccgcg
     3481 cccaacgcga tatgaaatac ggcagcgaca gcgaaaaagc cgccgccctc gaatacctca
     3541 aacaatacaa agccaagcag gatgccgcac aaaacaccgc ctcctgaccc ttccctgata
     3601 tgccgtctga agccgcttca gacggcattt tatcaagctc tccgtccgcc gcacccgtgc
     3661 cgtccgcatc ttaccgccca cccttccggc cgcgccgttt tcaataaaat attaattaca
     3721 cgccactaca aatttgctat aatccgcccc gaaaatctac ccaaccctca acaaaggaac
     3781 gaaccatggg catcaaagtc gccatcaacg gctacggacg catcggccgc caggttttgc
     3841 gcgccatcta cgattatcag attcaagacc aactccaaat cgtcgccgtc aacgccagcg
     3901 gtagccttga aaccaacgcc cacctcacca aattcgacac cgtgcacgga cgctttgaag
     3961 ccgacgtatc ccacgacggc ggcaacctca tcgtcaacgg cgacaaaatc cccttcttct
     4021 cgacccgcaa ccctgccgaa ctgccgtgga aagaactcgg tgtcgatttg gtcatggaat
     4081 gcaccggcgc gtttaccagc aaagaaaaag ccaaaatcca cctcgaaagc ggcgcgaaaa
     4141 aagtcctcat ttccgcaccg ggcggcgacg atgtcgatgc aaccgtcgtg tacggcgtga
     4201 acgacagcgt cctgaccgcc gacatgaccg tcgtttccaa cgcttcctgc accaccaact
     4261 gcctctcgcc ggttgccaaa gtgttgagcg aaagcgtcgg catcgtcaaa ggcgcgatga
     4321 ccaccatcca cgcgctgacc aacgaccaaa ccgttaccga cgtgcgccac aaagacctgc
     4381 gccgcgcccg cagcggcgtg gaaaacatga ttccgaccaa aaccggcgcg gcaaaagccg
     4441 tcggtttggt actgcccgaa ttgaaaggca ggctcgacgg gcttgccatc cgcgtgccga
     4501 ccgtcaacgt atcattggta gatttgagct tccaagccgc gcgcgacacg acagtcgaag
     4561 aaatcaacgc actgatgaaa gccgcctcgg aagcaggcgc gctcaaaggc gttttaggct
     4621 acaacaccct gcccttggtt tccatggact tcaaccacac taccgaagcc agccacttcg
     4681 acgcaacact gaccaaagtc gttgacggca acatgattaa agtcttcgca tggtatgaca
     4741 acgaatgggg cttcagctgc caaatgctga acaccgcacg ccgtatgttc ggacttgaag
     4801 tgcgcccgct caaataagca ataaaccgtc aaacaaaatg ccgtctgaaa cccgatgttt
     4861 tcaagttcca gacggcattt ttcaccgtga ttttacccgg ctgtcgtcat ttccaatttt
     4921 atagtggatt aacaaaaatc aggacaaggc gacgaagccg cagacagtac aaatagtacg
     4981 gcaaggcgag gcaacgccgt actggtttaa atttaatcca ctataatcca ccatatttga
     5041 acctgaccga agcataagcc gccatcaaag ccccttgcac gccacttcgc gccgcccgat
     5101 ttcctctttc aacggcacgg cgttcaacat ccgcagacgt tcggcaaaat ccgcaaacgg
     5161 cagcagctcc gaaccgaaac ggcgcatatg ccccgtatcc tgctggcagt ctatcagttc
     5221 cacacccaaa gacgcgagaa acggcacggc gcaggcaaac gcgattttcg acgcatccgg
     5281 ttgtaatgcg aacatcgatt cgccgtaaaa caccctgccg atctgaacgc cgtaaaaccc
     5341 gcccgccaac ctcgttttac cgttttcatc gggataatgg cactcaaacg aatgcgcgta
     5401 tcccatttcg tgcagcttca aatatgccgt ctgaaactcg ggcgcaatcc aagttccgtc
     5461 ctgattcggg cgcaccgctg ccgcacaatg cgcgaccact tccgcaaaac agccgttgac
     5521 cgtaacccga tagctgcagt tgcgtagcgt tttctccagc gagcgcggaa cgtgcagacg
     5581 ttcgggaaca atcaccgcac gcggcccgac cgcataccaa aaaaaccaac cgtctcgcaa
     5641 aaaccaagga aacacgccgt tccgatacgc ctcgagcagc cgccccgcgt ccaaatccct
     5701 gctcacgccg accagcccgt cgcaccgtgc caaagcatag gcaggatcgg gaaaggcata
     5761 attgtcaggg gcaagcagcg gaatacgcat ggcagttctc caaaaacaca gacggcatcc
     5821 aaaatcatga atgccgtctg aacaacaaac cgtccggatt taacgtttgc ccttggcctg
     5881 acagtcgctg cacacgccgt acatataaag cgcgtgatcg acgatgcggt agccgttttc
     5941 ctcggcgatt ttgtcttgca gggcttcgat ttcgggattg tggaattccg ttacctcgcc
     6001 gcacttcaca cagacgatat ggtcgtggtg gtcgcccttg tccaactcat aaaccgcctt
     6061 gcccgtttca aaatggtggc gttgcaaaat gcccgcctgc tcaaattgcg tcagcacgcg
     6121 ataaatcgtc gccacaccga tttccacacc ctcttccaac aaaatacggt acacatcctc
     6181 ggcactcaaa tgctcttccg catgagtctc gaacaaatcc aaaatcttca aacgcgggcc
     6241 ggtaactttc agtccactgt ctttcagttg cgcaatgttg ctgaattttt ccataatatt
     6301 caatatccct gtaaaataat agacgctata atacgcaatt tcagcctgct tgcccactat
     6361 cacaccatag cagtttgcaa tagcaaaacc gcaacggcgg acgggcagtc ggacacagac
     6421 agggtgaaat accgcttaag cgtatgatta tcgttcgctt ttataaaata ttcaagcagt
     6481 gctacactag acatcccgat ttgcacagaa aggttctccc gtgaacaaaa ccctcatact
     6541 cgtcctttcc gccctgttca gcctgaccgc gtgcagcgtc gaacgcgttt cactgttccc
     6601 ctcgtacaaa ctcaaaatca tacagggcaa cgaactcgaa ccccgcgccg ttgccgccct
     6661 gcgccccggc atgaccaaag accaagtcct gctcctgctc ggcagcccca tgctgcgcga
     6721 cgcattccat accgaccgct gggactatac cttcaacacc tcccgcaacg gcatcatcaa
     6781 agaacgcagc aatctgaccg tctattttga aaacggcgtg ctcgtacgcg ccgaaggcga
     6841 cgccctccaa aatgccgccg aagccctccg cgcgaaacaa aacgcagaca aacaataagg
     6901 aacacacatg ataccgctca aaatcgccat cgccggcgtc aacggccgca tggggcgcgt
     6961 attggttgaa gccgtcaaca accatcccga caccgtcctt tccggcgcgc tcgaacactc
     7021 gggctcagaa gccctcgggc tggacgcagg ctacgccgtc ggactcaaaa ccggcatcgc
     7081 catttcagac gacgttgaca ccgttctcgc acaaagcgac gtactcatcg actttacccg
     7141 ccccgagccg accctcaaac acctgcaaaa atgcgttgaa aaacaagtca acatcatcat
     7201 cggcacaaca ggcttcgacg atgcgggcaa agccgccatc caagccgcag gcgaaaaaac
     7261 aggcgttgtc ttcgccgcca acttcagcgt cggcgtcaac ctcaccttcc acctcctcga
     7321 caccgtcgcc cgcgtattaa acgaaggcta cgacatcgaa atcattgaag gtcaccaccg
     7381 ccacaaagtc gatgccccca gcggcaccgc gttacgcatg ggtgaagtca tcgccggcgc
     7441 gctcggccgc gacctcaaac aatgcgccgt ttacggccgt gaaggccaca ccggtccgcg
     7501 cgatccgtcc accatcggct ttgccaccgt ccgcgcaggc gacatcgtcg gcgaccacac
     7561 cgccctcttc gccaccgacg gcgaacgcgt ggaaatcacc cacaaagcca gcagccgcat
     7621 gacctttgcc gccggtgccg tccgcgccgc agtttgggta aacggcaaaa cgggtttgta
     7681 cgatatgcag gatgtactcg ggctgaacaa ccgttaaccc ccatacaaaa tgccgtctga
     7741 aaagatattg ttcagacggc attttgccga caggctccgt atcggcatat caatgtttca
     7801 acacacagga cgacacataa agcgtcgccc tatgtgttgc cctgattcgg aaggggttac
     7861 gcccctccca aataaagtct gattctaccg ccccgaagga cagatgtccg agtggcgggg
     7921 tttcaaccga aaaggaaata cgataaagtt gcctgctcag cataacaagc tacggctcgt
     7981 ttaattgaaa ctctcctgat ctaaaaattc taactctatt tcccggcaaa ctatatctat
     8041 actaaaaccg gtcggaagat catacctact gcctatcact tccagcgcac ctccataatc
     8101 caagatttca tcatcctgct ttaattctcc aagttccaat acatttttga tatttttatc
     8161 ttggttcttc gtggcgtatc catagataaa tttcagatag ctgaactgct tgaatttaat
     8221 ttttacccag tctgtataat ttggtgtagg aatctcttga ggaaagtccg gataatccac
     8281 attctggacg atgatatgga attcatcgtt tttcaaagta tagtttaata gagtgccctc
     8341 atatatatac agaaattgat aatctttttt tggaatggta taagttgtca tattatttta
     8401 ccttttcaaa aacaatgagt ttaagatttt ttgagtccaa gttggttcta ctactcttat
     8461 gaaatttcag ttgtttaaac tcttccttta ttttaaggaa tttttcaact agccgagaac
     8521 aaactggagc aaaatggacg attgagttta ggaatcaacc tgattcagta catgggcaaa
     8581 gattagaatt aaaatttaga taaaggtt
//
LOCUS       DAXIFD010000083         8603 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.083, whole genome shotgun sequence.
ACCESSION   DAXIFD010000083 DAXIFD010000000
VERSION     DAXIFD010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8603
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.083"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(280..3132)
                     /gene="gcvP"
                     /locus_tag="ACFOCN_001305"
     CDS             complement(280..3132)
                     /gene="gcvP"
                     /locus_tag="ACFOCN_001305"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HFC6970445.1"
                     /translation="MKLSELFNPNEFAARHLSFGDEAALLAAVGEKSMDEFVGNTVPQ
                     SIRMPSELDLPDALTEADALAKLKGIASKNVINKSYIGLGYYPTRVPNVILRNVLENP
                     GWYTAYTPYQAEIAQGRLEALLNFQQVCIDLTGFPVAGASLLDEATAAAEAMAMAHRV
                     GKVKSERFFVDARVYPQTLDVMKTRAKYFGFELVVSDFAKADDGEYFGALFQYVGKDG
                     DVQDLQDVIGRLKAKGTIVAVAADIMSLVLLKSPAELGADIALGNTQRFGVPMGFGGP
                     HAAYFAFKDAFKRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQAL
                     LANLAGMYAVYHGPEGVKRIANRIHALASAFADALVSDGINVVHKVFFDTVTVDFGNK
                     EKADQVFAAALESGYNLRRVNDTQVAAAFHETSACEDLVDLYRAFTGKDTFAFADDVK
                     GRLNAELLRQDDILQHPVFNRYHTEHEMLRYLKKLEDRDLAMNRSMISLGSCTMKLNA
                     TAEMLPITWAEFSDIHPYAPEAQTAGYRELLADMENSLKSITGFDAISFQPNSGAQGE
                     YSGMLAIRRYQEAQGEAQRNICLIPKSAHGTNPATAAMLGLKVVVVDTDEHGNVNIDD
                     LKAKAEQHRDALSAIMITYPSTHGVYEEGIRDICRIVHENGGQVYMDGANLNAQIGIM
                     QPAEVGADVLHMNLHKTFCIPHGGGGPGMGPIGLKAHLAPFAPGHALTDTHSASADQT
                     AVAAAAFGSASILPITWMYLTMMGKQGMEQATRWALLNANYVAKRLSEDYPILYTGKN
                     GRVAHECIVDLRPLKAESGITETDIAKRLMDYGFHAPTVSFPVAGTLMIEPTESESKA
                     ELDRFIAALKQIKQEVLKVGRGEWPKEDNPLVNAPHTASDVTGEWAHPYSREEAVFPL
                     PFVREHKFWPSVNRVDDVYGDRNLVCSCPPMENYED"
     gene            complement(3163..3522)
                     /locus_tag="ACFOCN_001306"
     CDS             complement(3163..3522)
                     /locus_tag="ACFOCN_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970446.1"
                     /translation="MTDRPSLLWIKPGQAEIMEYCEPEEASDPYATYRRASLMAMLPL
                     FVVILVLLNIVFPLLAHPLAWLVPAGFMVLVGGFPLSLPLVALLVLTCCILAHCPPLS
                     RLLCCPCPNHPMSKNSA"
     gene            3521..3700
                     /locus_tag="ACFOCN_001307"
     CDS             3521..3700
                     /locus_tag="ACFOCN_001307"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HFC6970447.1"
                     /translation="MPSEPAGRLFQKTPYRRNFMRLYGVGFALQTAYASRSSLVFQSV
                     HDYINNLGADKPLFI"
     gene            complement(3693..4334)
                     /locus_tag="ACFOCN_001308"
     CDS             complement(3693..4334)
                     /locus_tag="ACFOCN_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HFC6970448.1"
                     /translation="MPSEKPMNRRTFLLGAGALLLTACGRKSARTHAKIPEGSTVLAL
                     GDSLTFGYGANPGESYPAQLQKLTGWNIVNGGVSGDTSAQALSRLPALLARKPKLVIV
                     GIGGNDFLRKVPKEQTRANIAKIIETVQKENIPAVLVGVPHITLGALFGHLSDHPLYE
                     DLSEEYGIPLFGGAWAEILGDNNLKSDQIHANGKGYRKFAEDLNQFLRKQGFR"
     gene            complement(4324..4875)
                     /locus_tag="ACFOCN_001309"
     CDS             complement(4324..4875)
                     /locus_tag="ACFOCN_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HFC6970449.1"
                     /translation="MNYCEFAASLPENTDNPNKHYHDTQYGFPIEDDNELFERLVLEI
                     NQAGLNWTLMLKKRQAFQTAFEGFDIDTVAAFDDTDRERLLADAGIVRNRLKIDAAIF
                     NARQIQALQQEYGSFKNWLDTHHPRSKDEWVKLFKKHFKFVGGEIVGEFLMSTGYLKG
                     AHAESCPVYRETLKYHPKWLDAI"
     gene            complement(4879..5397)
                     /locus_tag="ACFOCN_001310"
     CDS             complement(4879..5397)
                     /locus_tag="ACFOCN_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HFC6970450.1"
                     /translation="MRLFPIAAALSLAACGTVQSTQYFVLPDSRYIRPATQGGETAVE
                     VRLAEPLKRGGLVYQTDPYRLNTAQNHVWADTLDDMLEAALSNAFNRLDSTRIFIPAS
                     RSGSTEKWTVYIDAFQGSYTGKTLISGYAVLPDGTNRPFHIETEQQGDGYAAMTAALE
                     QGLKQAAQQMVE"
     gene            complement(5397..7037)
                     /gene="pqiB"
                     /locus_tag="ACFOCN_001311"
     CDS             complement(5397..7037)
                     /gene="pqiB"
                     /locus_tag="ACFOCN_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HFC6970451.1"
                     /translation="MTDNSPPPNGHAQAHVRKNNTFLSAVWLVPLIALIAGGWLWIKE
                     IRNRGPVVTLLMDSAEGIEVNNTVIKVLSIDVGRVTRIKLRDDQKGVEVTAQLNADVS
                     GLIRSDTQFWVVKPRIDQSGVTGLGTLLSGSYIAFTPGKSDEAKDVFQVQDIPPVTAI
                     GQSGLRLNLIGKNDRILNVNSPVLYENFMVGQVESAHFDPSDQSVHYTIFIQSPNDKL
                     IHSASRFWLESGINIETTGSGIKLNSAPLPALLSGAISFDSPKTKNSKNVKSEDSFTL
                     YDSRSEVANLPDDRSLYYTAFFKQSVRGLTVGSPVEYKGLNVGVVSDVPYFDRNDSLH
                     LFENGWIPVRIRIEPSRLEINADEQSKEHWKQQFQTALNKGLTATISSNNLLTGSKMI
                     ELNDQPSSSPKLRPHTVYADDTVIATQGGGLDDLQVKLADLLDKFGKLPLDKTVSGLN
                     ASLAELKSTLKSINTLSNNPQTQNIPNELNQTLKELRTTLQGVSPQSPIYGDVQNTLQ
                     SLDKTLKDVQPVINTLKEKPNALIFNSSSKDPIPKGSR"
     gene            complement(7030..8490)
                     /locus_tag="ACFOCN_001312"
     CDS             complement(7030..8490)
                     /locus_tag="ACFOCN_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqiA/YebS family transporter subunit"
                     /protein_id="HFC6970452.1"
                     /translation="MGSAVGGQPLEKIFLPDDKGLFILPNLPVLHPDWVYRLFSFIMP
                     PLIFATFPMKPFAENIPHSLRGNCRDEALPPHTVDCPECGCRADVPRLDRGEAAFCPR
                     CGYKLFRVGRHPFSAPPAYAAASLILMAFAYGMTYIEVGIPGAASVLSLPEMMRLMVF
                     QDYGFLAEVMFVLTFGAPVLFLLLCLYVYAALIRKRVYPALRLATRVMVRLRQAMMVD
                     VFFVSTLVAYIKLSSVAEVRFGSAFYLMFALSVMLIRTSVSVPQHWVYFQIGRLTGDN
                     AVQTASEGKTCCSRCLYFRDSAESPCGVCGAELYRRRPKSLSISSAFLTAAVILYFPA
                     NILPIMISSNPAATEVNTILNGIAYMWDEGDRLIAAVIFSASILVPVLKIAAMSVLIA
                     SARFALPTGAKKLSHLYRITEAVGRWSMIDIFVIIILMCSFHTYAARVIPGSAAVYFC
                     LVVILTMLSAYYFDPRLLWDKRASDGIAFNETEKHD"
     gene            complement(8393..>8603)
                     /locus_tag="ACFOCN_001313"
     CDS             complement(8393..>8603)
                     /locus_tag="ACFOCN_001313"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970453.1"
                     /translation="IKNHKRNLLSHIFGKNIICVMFLSRYFTILYRIGILSNGFGSRR
                     TAARKNIFAGRQGFVHTAEPAGFAS"
BASE COUNT         1926 a         2199 c         2432 g         2046 t
ORIGIN      
        1 gaggcaacgc tgtactggtt tttgttaatc cactatattt gtttgtccgt gtggaaatga
       61 catcaaaggg tgtgaatagg cttttcatct ttgaaatctg tttgcacgat cggatgaata
      121 aaaagtagga tgataaaaaa gctgatgtat ggatactggt ttaactcatt tgttttaaag
      181 ttatagtcga gatacgtgta ttggtgcaac cagtctgccg ttgacgaaaa tgccgtctga
      241 aaatgtttca gacggcattt gtcttcgggg tttcaacggt cagtcttcat aattttccat
      301 cggtgggcag ctgcacacga gattgcggtc gccgtacacg tcgtccacac ggttgacgct
      361 cggccagaat ttgtgttcgc ggacgaatgg caacggaaag acggcttctt cacgggagta
      421 cggatgcgcc cattcgccgg ttacatcgga tgcggtatgc ggagcgttga ccagcggatt
      481 gtcctctttc ggccattcgc cgcgcccgac tttcagcact tcctgtttga tttgtttcag
      541 ggcggcgatg aagcggtcga gttcggcttt gctttcgctc tcggtcggct cgatcatcag
      601 cgtaccggca acggggaagg aaaccgtcgg ggcgtggaag ccgtagtcca tcaggcgttt
      661 ggcgatgtcg gtttcagtga tgccgctttc ggctttgagc ggacgcaaat cgacgataca
      721 ttcatgcgcg acgcggccgt ttttgcctgt atacagaatc ggatagtctt cgctcaggcg
      781 tttggcaacg tagttggcgt tgagcaatgc ccagcgtgtc gcctgttcca tgccttgttt
      841 gcccatcatg gtcaggtaca tccaagtaat cggcagtatg gacgcagaac cgaaggccgc
      901 agcagcaacg gcggtttggt cggcactggc gctgtgggtg tcggtcaaag cgtgtcccgg
      961 tgcgaacgga gccagatggg ctttcaagcc aatcggaccc atgcccggac cgccgccgcc
     1021 gtgagggata cagaaggttt tgtgcaggtt catgtgcaac acgtccgcgc cgacttcggc
     1081 aggctgcatg atgccgattt gggcgttgag gttggcgccg tccatgtaaa cctgtccgcc
     1141 gttttcatgg acgatgcggc agatgtcgcg gatgccttct tcgtacacgc cgtgggtgga
     1201 cggataggta atcatgatgg cggacaaagc gtcgcggtgt tgctcggctt tggctttcaa
     1261 atcgtcgatg ttgacgttgc cgtgttcgtc ggtatcgacg acgacgactt tcaaaccgag
     1321 catggcggcg gtggcggggt tggtgccgtg ggcggatttg ggaatcagac agatgttgcg
     1381 ctgcgcttcg ccttgcgctt cctgatagcg gcggatggca agcataccgc tgtattcgcc
     1441 ctgcgcgccg gagttgggct ggaaggaaat tgcatcaaaa ccggtgatgg atttcaggct
     1501 gttttccata tcggcgagca attcgcggta gccggcggtt tgcgcttcag gagcgtaagg
     1561 atggatgtcg gagaactccg cccaagtaat cggcaacatt tccgcagtcg cgttgagttt
     1621 catggtgcag ctgcccaatg aaatcatgct gcggttcatc gccaagtcgc ggtcttcgag
     1681 ttttttcagg tagcgcagca tttcgtgttc ggtgtggtaa cggttgaaca cgggatgttg
     1741 cagaatgtcg tcttgacgca gcagttcggc gttcagacgg cctttgacat catcggcaaa
     1801 tgcgaacgta tccttgccgg taaacgcgcg gtacaaatca accaaatctt cgcatgccga
     1861 tgtttcgtgg aatgcagccg caacttgagt atcgttaacg cggcgcaggt tatagcccga
     1921 ttccaaagca gcggcaaaca cttggtctgc tttctctttg ttgccgaaat cgacggtaac
     1981 ggtatcgaag aagactttgt gaaccacatt aatgccgtct gaaaccagcg catcggcaaa
     2041 agcagaagcc agcgcgtgaa tgcggttggc gatgcgtttc acgccttcag ggccgtggta
     2101 aacggcatac atacccgcca aattcgccag caatgcttgt gcggtacaaa tattggacgt
     2161 ggctttttcg cggcggatgt gttgctcgcg ggtggacaac gccatgcgca aggcaggttt
     2221 gcctgatgcg tctttggata cgccgatgat gcggccaggg gcggaacgtt tgaacgcgtc
     2281 tttaaacgcg aaataagcgg cgtgcggccc gccgaagccc ataggcacgc cgaaacgttg
     2341 ggtgttgccc aaagcaatat ccgctcccaa ttcggcaggt gatttcagta aaaccaagct
     2401 catgatgtcg gcggcaacag caacgatcgt gccttttgct ttcagacgac cgataacatc
     2461 ctgcaagtct tgcacatcgc cgtctttgcc gacgtattgg aacagcgcgc cgaagtattc
     2521 gccgtcatcc gctttggcaa aatcgctgac caccagctcg aagccgaaat atttggcgcg
     2581 ggttttcatc acgtccaaag tttgcggata cacgcgcgca tccacaaaga aacgctcgga
     2641 tttcaccttg cccacgcggt gcgccatcgc catcgcttca gccgcagcag ttgcctcgtc
     2701 cagcaaagac gcgcccgcca cagggaaacc ggtcaaatcg atacacactt gttggaagtt
     2761 taacaacgct tccaaacgac cctgggcaat ttccgcctga tacggcgtgt aggcggtgta
     2821 ccaacccgga ttttccaaca cgttgcgcaa aatcacgttc ggcacgcggg tcgggtaata
     2881 gcccaaaccg atataggact tgttgatcac gtttttcgac gcaatgcctt tcaatttcgc
     2941 caacgcgtcc gcttcggtca gggcatcggg caaatcgagt tcggacggca tacggatgct
     3001 ttgcggcacg gtattgccga caaattcgtc catgcttttc tcgccgacag cggcaagcaa
     3061 cgccgcttcg tcgccgaaac tcaaatggcg cgcggcaaat tcgttcgggt tgaacaattc
     3121 agatagtttc atttctactc cttcgggttt gtagggctgc catcaggcag aatttttaga
     3181 catcggatga ttcgggcaag ggcagcacaa aagacgggat aatggcggac aatgcgccag
     3241 aatgcagcag gtcaggacaa gcagcgccac aagcggcagc gataagggaa agccgccgac
     3301 caaaaccatg aaacctgcag gcaccagcca agccaaggga tgcgccagaa gcggaaaaac
     3361 aatattgagc agaaccaaaa tcacaacaaa cagcggcagc atcgccatca ggctggcacg
     3421 cctgtatgtt gcgtacgggt cggatgcttc ttcaggttcg caatattcca tgatttcagc
     3481 ctgtcctggc tttatccaca gcaggctcgg acggtcggtc atgccgtccg aaccggcagg
     3541 ccgtcttttt caaaaaacgc cataccgccg caacttcatg cggctgtatg gcgtaggttt
     3601 tgcacttcag acggcatatg cgtcccgaag cagtttggtg ttccagtcgg ttcatgatta
     3661 tataaacaac ttgggtgcgg ataaaccttt gtttatctaa acccctgttt tctcaaaaat
     3721 tgattcaaat cttcggcaaa tttccgatag cctttgccgt tggcgtggat ttggtcggat
     3781 ttcagattat tatcgcccaa aatttccgcc cacgcgccgc cgaacagcgg aatgccgtat
     3841 tcctcggaca aatcctcata cagcggatga tcgctcaaat gcccgaacaa cgcgcccagt
     3901 gtgatgtgcg gcacgccgac gaggacggcg gggatgtttt ccttctgcac ggtttcgatg
     3961 attttcgcga tattggcgcg ggtctgctcc ttgggaactt tgcgcagaaa gtcgttgccg
     4021 cctatgccga caatcacaag cttgggtttg cgtgccaaca gcgcgggcag gcgcgacagg
     4081 gcttgggcgg atgtatcgcc cgatacgccg ccgttgacaa tattccaacc cgtcagtttt
     4141 tgcagttgcg cggggtagga ttcgccaggg tttgcgccgt agccgaaggt aagcgaatcg
     4201 cccaaggcaa gtacggtgct tccttcggga attttggcgt gggttcgggc ggattttctg
     4261 ccgcaggcgg taaggagcaa cgcgcctgcg ccgaggagga aggttcttct gttcattggt
     4321 ttttcagatg gcatcgagcc atttcgggtg gtatttcagg gtttcacggt aaaccggaca
     4381 gctttcggcg tgcgcgcctt tgaggtagcc ggtactcatc agaaattcgc cgacgatttc
     4441 gccgccgacg aatttgaaat gttttttaaa gagtttaacc cattcgtctt tgcttcgcgg
     4501 atggtgcgtg tcgagccagt tcttgaacga gccgtattct tgttgcaacg cttggatttg
     4561 ccgtgcattg aaaatggcgg catcgatttt caggcggttg cggacaatgc ccgcgtcggc
     4621 aagcaggcgt tcgcggtcgg tgtcgtcgaa ggcggcaacc gtatcgatgt cgaaaccttc
     4681 aaatgccgtc tgaaacgcct gccgcttctt cagcatcagc gtccagttta atcctgcctg
     4741 attgatttcc aacaccagcc gctcaaacaa ttcattgtcg tcctcaatcg gaaaaccgta
     4801 ttgcgtgtcg tggtaatgtt tgttcgggtt atcggtgttt tcgggaagtg aggcggcaaa
     4861 ttcgcaatag ttcacgtttt actcgaccat ctgttgcgcc gcctgtttca gtccctgttc
     4921 gagtgcggcg gtcatcgcgg cgtagccgtc accctgctgt tcggtttcga tatggaaggg
     4981 tctgttcgta ccgtcgggta ggacggcgta gccgctgatg agggttttgc ccgtgtagct
     5041 gccttggaat gcgtcaatat agaccgtcca tttttcggta ctgccgctgc gtgaggcagg
     5101 aataaagatg cgtgtgctgt ccaaacggtt gaatgcattg ctcaacgccg cttcgagcat
     5161 atcgtccaag gtgtccgccc aaacgtggtt ttgtgcggtg ttgaggcggt aggggtcggt
     5221 ttgatagacc agtccgccgc gtttgagcgg ttcggcaaga cggacttcga cggcagtttc
     5281 gccgccttgc gttgcaggac ggatgtagcg gctgtcgggc aacacgaaat attgtgtgct
     5341 ttgcacagta ccgcaggcgg caagcgacag ggcggcggca atcgggaaaa ggcgcattat
     5401 cggcttcctt tcgggatagg gtctttgctg ctgctgttga aaatcagcgc gttgggtttt
     5461 tctttcaaag tgttaatgac gggttgaacg tcttttaagg ttttgtccaa actttgcagc
     5521 gtattttgta cgtcgccgta gataggcgat tgcggcgata cgccttgcag ggttgtgcgc
     5581 aactctttca gggtttggtt caactcgttc ggaatgtttt gcgtttgcgg attattgctt
     5641 agcgtgttaa tggatttcag cgtggatttg agttcggcga gcgaagcgtt taaacctgaa
     5701 acggttttgt ctaaaggcag tttgccgaat ttgtccagca aatccgccaa tttgacctgt
     5761 aagtcgtcca aaccgccgcc ttgtgtagcg atgacggtat cgtctgcata aacggtatgc
     5821 ggtcgcagct tgggcgaaga cgaaggctga tcgttcaact caatcatttt gctgccggtc
     5881 agcaggttgt tgctggagat ggtggcggtc aggcctttgt ttaaagccgt ctgaaattgt
     5941 tgtttccaat gctctttgct ttgttcgtcg gcattgattt ccaaacggga aggctcgatg
     6001 cggatgcgta cgggaatcca gccgttttca aataaatgca ggctgtcgtt gcggtcaaaa
     6061 taagggacat cggaaaccac gccgacattc agccctttgt actcgacggg cgaaccgacg
     6121 gtcaggccgc gcacggattg tttgaaaaac gcggtgtagt acagcgagcg gtcgtcaggc
     6181 aggttggcga cttcgctgcg gctgtcgtaa agcgtgaagc tgtcttcgct tttgacgttt
     6241 ttactgtttt tggttttcgg cgaatcaaat gaaatcgcgc ccgacagcag ggcaggcaga
     6301 ggggcggaat tgagtttgat gccgctgcct gtggtttcga tattgatgcc gctttccagc
     6361 caaaaacggc tggcggaatg aatcagtttg tcgttggggc tttggatgaa gatggtgtaa
     6421 tgcacgcttt ggtcggacgg gtcgaaatgc gcgctttcga cttgcccgac cataaagttt
     6481 tcatacaaaa cagggctgtt gacgttgagg atgcggtcgt ttttaccaat caaattcaag
     6541 cgcagcccgc tttgcccgat ggcggtaacg ggcggaatgt cctgcacttg gaacacgtct
     6601 tttgcctcgt cgcttttgcc gggtgtaaaa gcgatgtacg aacccgaaag cagcgtaccc
     6661 aaaccggtta cgccgctttg gtcgatacgc ggcttgacca cccaaaactg ggtatcgctg
     6721 cggatgaggc cggatacgtc cgcattgagt tgggcggtta cttccacgcc tttttggtcg
     6781 tcgcgcagtt tgattcgggt aacgcgtccg acatcgatgc tcaatacttt gatgaccgta
     6841 ttgttgacct caatgccttc cgcgctgtcc atcaagagcg taaccacagg ccccctgttg
     6901 cggatttcct taatccacag ccagccgccg gcaatcagcg cgatcagcgg aaccagccag
     6961 acggcagaga ggaaggtgtt gtttttgcgg acgtgtgctt gggcgtgtcc gtttggagga
     7021 gggctgttgt cagtcatgtt tttccgtttc gttgaaagca atgccgtctg aagcgcgttt
     7081 gtcccaaagc aggcgcgggt cgaaataata ggcggacagc atcgtcagaa tcacgaccag
     7141 gcagaaatag actgccgcac tgcccggaat gacgcgcgcg gcataagtgt ggaacgaaca
     7201 cattaaaata ataatcacaa aaatatcaat catcgaccag cggccgaccg cttcggtgat
     7261 gcggtagagg tgtgacaatt tctttgcgcc tgtcggcaaa gcgaagcggg cggacgcaat
     7321 taaaaccgac attgccgcaa tcttcagcac cggcaccaaa atactcgcgc tgaaaataac
     7381 cgccgcaatc agcctgtcgc cctcgtccca catataagcg atgccgttaa ggatggtatt
     7441 gacctccgtg gcggcaggat tggacgaaat cataatcggc aggatattgg cagggaaata
     7501 caaaataacc gccgccgtca gaaacgccga cgaaatactc agacttttcg gccgtcggcg
     7561 gtacagttcc gcgccgcaca caccgcaggg ggattcggca ctgtcgcgga aatacaggca
     7621 gcggctgcaa caggttttgc cttccgatgc cgtctgaacc gcattatccc ccgtcagccg
     7681 cccgatttga aaatacaccc aatgctgggg aacggatacc gaagtccgaa tcagcataac
     7741 cgacagcgcg aacatcagat aaaacgccga cccgaagcga acctctgcca cagacgagag
     7801 cttgatatac gccaccagcg tggaaacaaa aaacacatcc accatcatcg cctgcctcaa
     7861 gcgcaccatc acacgcgttg ccaaacgcag cgcaggatac acccgtttcc gtatcagcgc
     7921 ggcatagaca tacaggcaca gcagcagaaa cagaaccggc gcgccgaagg tcagcacaaa
     7981 catcacttcg gccaaaaaac cataatcctg aaacaccatc aggcgcatca tctcgggcag
     8041 cgaaaggacg gatgccgcac ccggtatccc gacctcgata tacgtcatac cgtaagcaaa
     8101 cgccatcaaa atcagcgaag ccgccgcata agcgggcggg gcggaaaaag gatgcctgcc
     8161 caccctgaag agcttatagc cgcagcgcgg gcagaacgcc gcctcccccc tgtccaaccg
     8221 aggcacatcc gcgcggcagc cgcattccgg gcaatctacc gtatgcggcg gtagggcttc
     8281 gtcgcggcag ttgccgcgaa ggctgtgggg gatattttcg gcaaacggct tcatcgggaa
     8341 agtggcaaat ataagtggcg gcattataaa ggaaaaaagg cgatacaccc aatcaggatg
     8401 caaaaccggc aggttcggca gtatgaacaa acccttgtcg tccggcaaaa atattttttc
     8461 gagcggctgt ccgccgactg ccgaacccat ttgataaaat cccgattctg taaagaatag
     8521 taaaatacct gcttaaaaac atcacgcaaa tgatattttt tccaaaaata tgtgataata
     8581 aatttcgttt atgattcttt att
//
LOCUS       DAXIFD010000084         8597 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.084, whole genome shotgun sequence.
ACCESSION   DAXIFD010000084 DAXIFD010000000
VERSION     DAXIFD010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8597
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.084"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            194..649
                     /gene="mraZ"
                     /locus_tag="ACFOCN_001314"
     CDS             194..649
                     /gene="mraZ"
                     /locus_tag="ACFOCN_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HFC6970454.1"
                     /translation="MFGGAHELSIDSKGRLAVPAKFRDILSRLYTPAVVVTLESKHKL
                     LMYPVAEWEKVAAQLLNLKVADNPVLRRFQNLLLHNAEILEWDSAGRVLLPAGLRKRV
                     DFDREVVLVGRANRLELWGREQWEAEMVQALDDDPDELAFQLGQTDLQL"
     gene            646..1632
                     /gene="rsmH"
                     /locus_tag="ACFOCN_001315"
     CDS             646..1632
                     /gene="rsmH"
                     /locus_tag="ACFOCN_001315"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HFC6970455.1"
                     /translation="MSGAESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLIL
                     SRLGDAGRLIVFDKDPQAIAVAEELARSDKRVGVVHGGFASFQAALDGLGIGKVDGAL
                     FDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGE
                     ERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQDPATRTFQAVRIFINRE
                     LEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADL
                     PELPLKIVGRALKPGEAEIAANPRARSAVLRVAERTAGPIPEQSQRKTSEWQ"
     gene            1629..1892
                     /gene="ftsL"
                     /locus_tag="ACFOCN_001316"
     CDS             1629..1892
                     /gene="ftsL"
                     /locus_tag="ACFOCN_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HFC6970456.1"
                     /translation="MNKLNFLLLLAVCVSAFSVVMQQNQYRLNFTALDKAKKQEIALE
                     QDYAQMRLQQARLANHEAIRAAAEKQNLHPPVSGNTFMVEHQR"
     gene            1953..3698
                     /locus_tag="ACFOCN_001317"
     CDS             1953..3698
                     /locus_tag="ACFOCN_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HFC6970457.1"
                     /translation="MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAIAVLFAGLIA
                     RGLYLQTVTYNFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPKEM
                     KEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFV
                     FEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDRQGNIV
                     DSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEIL
                     ALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNT
                     QPYKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRM
                     HSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE
                     KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGR
                     YADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGI
                     SPTKPLTAAAVKTPS"
     gene            3723..5201
                     /locus_tag="ACFOCN_001318"
     CDS             3723..5201
                     /locus_tag="ACFOCN_001318"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HFC6970458.1"
                     /translation="MFSKLTPLAETGIPTLSCANAAGRLLHSDSRQIKQGDIFVACPG
                     EYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGILAAQVYGN
                     VSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAP
                     VDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEA
                     YGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDF
                     TASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANDYPLDKVLDVLAKIR
                     PASGRMDCIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRG
                     KRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAVRYAVE
                     QAAANDIILIAGKGHENYQDVQGVKHRFSDLEIVGQALLTRK"
     gene            5224..5661
                     /locus_tag="ACFOCN_001319"
     CDS             5224..5661
                     /locus_tag="ACFOCN_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970459.1"
                     /translation="MKQSARIKNMNQTLKNTLGICALLAFCFGAAIASGYHLEYEYGY
                     RYSAVGALASVVFLLLLARGFPRVSSVVLLIYVGTTALYLPVGWLYGAPSYQIVGSIL
                     ESNPAEAREFVGNLPGSLYFVQALFFIFGLTVWRYCVSGGGIC"
     gene            5735..6871
                     /locus_tag="ACFOCN_001320"
     CDS             5735..6871
                     /locus_tag="ACFOCN_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6970460.1"
                     /translation="MDKIASDKDLREPDAGLLLNIFDLYYDLASAPAQYAAKRAHILE
                     AAKKASTWHIRHVAPKYKNYVVVIGESARSDYMNVYGFPLPDTPFLSQTKGLLINGYQ
                     STAHATNLSLPQTLGLPGEPNNNIVSLAKQAGFRTAWLSNQGMLGHFANEISTYALRS
                     DYPWFTQRGDYGKSAGLSDRLLLPAFKRVLIGNAGTKPRLIVMHLMGSHSDFCTRLDK
                     DARRFQYQTEKISCYVSTIAQTDKFLEDTVKILNENKESWSLVYFSDHGLMHVGKGGE
                     RTLTHGAWKRQSYGVPLVKISSDDTRREMIKVRRSAFNFLRGFGSWTGIETDELPDDG
                     YDFWGNVPDVQGEGNNLAFIDGLPDDPAPWYAGKGKSTKNTSKK"
     gene            6997..8355
                     /gene="murF"
                     /locus_tag="ACFOCN_001321"
     CDS             6997..8355
                     /gene="murF"
                     /locus_tag="ACFOCN_001321"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HFC6970461.1"
                     /translation="MKPLDLNFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALA
                     GGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPF
                     VFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAV
                     IEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDG
                     MALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAV
                     VLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDD
                     TYNANPDSMKAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAY
                     FVGDNSVEAAEKFGADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALE
                     DK"
     gene            8358..8534
                     /locus_tag="ACFOCN_001322"
     CDS             8358..8534
                     /locus_tag="ACFOCN_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970462.1"
                     /translation="MKSRRFFKALLLIAALVGAFYAGMQTQAYLYEDLCLDLGGGKNP
                     GSYPICVIEKVPAR"
BASE COUNT         2014 a         2103 c         2473 g         2007 t
ORIGIN      
        1 acccgccgtg ccgttgtcgt cattttttat cttattgttt ttaaaaggaa taaaaatttc
       61 agatatgtta atgagttttc atgccctgat ttgaccgagt gtttaaaatt tcttatagtg
      121 tcgattggtg gggaattgtg gggcaaagtg tctcttttac ccttgtgatt ttgatttcgg
      181 cttgggacat gtcatgttcg gcggcgcaca cgaattaagc atcgacagta aggggcggtt
      241 ggctgttcct gccaaattcc gtgacattct gtcgcgcctc tatacgcctg ccgtagtggt
      301 aacgctcgag tcgaaacaca agctgttgat gtaccctgtt gcggagtggg aaaaggttgc
      361 ggcgcaactt ttaaacttaa aagtggcgga taaccctgtt ttgcggcggt ttcaaaatct
      421 tttgctgcat aacgcggaaa ttttggaatg ggacagcgcc ggccgggtgc tgcttcctgc
      481 cggactgagg aaaagggtgg atttcgaccg tgaagtcgtt ttggtcggtc gtgccaaccg
      541 tttggagctt tggggtcgcg agcagtggga ggctgagatg gttcaggctt tggatgacga
      601 tcctgacgaa cttgccttcc agttgggtca gacggatttg caattgtgag tggagcagaa
      661 agttaccggc atatcacggt cttgctgaat gaggcggtgg atgcgcttgc cgtgcgcgaa
      721 gacggtgtct atgtggacgg tacgttcggc aggggagggc attcccggct gattttgtcg
      781 cgtttgggcg atgcggggcg gttgattgtt ttcgacaaag accctcaggc gattgctgtg
      841 gcagaagagc tggcgcgttc ggacaaacgg gtcggtgtcg tgcatggcgg ttttgcttcg
      901 tttcaggcgg cattggacgg tttgggtatc ggcaaggtgg acggtgcgct gtttgatttg
      961 gggatttcgt ctccgcaaat cgatgacggc agccgcggtt tcagcttccg tttcgatgcc
     1021 cctttggata tgcgtatgga tacgacgcgc ggtatgtctg ccgcagagtg gatagcggtt
     1081 gcgtcggaac aggatttgca cgaggtaatc aagaattatg gtgaagagcg gtttagccgc
     1141 cagattgcgc gcgccattgt tgcgcaacgg gcggaaagtc caatcgatac aacccgcaag
     1201 ctggcgcaga tcgtggcaca aaacgtccgt actcgcgagc gggggcagga tcctgcgacg
     1261 cgcaccttcc aggcggtccg catctttatt aaccgcgagc ttgaagaagt aggggcagta
     1321 ttgccgcagg tcatgtgtcg tctgaaagag ggcggacgtt tggcggtcat tgctttccat
     1381 tcgttggaag accgcattgt gaagcagttt gtcaaaaaat attcgcaaca cgcgcccctg
     1441 ccgcgctggg cggcggtcag ggaagcggat ttgcccgagc tgcccctgaa aatcgtgggc
     1501 agggcattaa agccgggtga ggcggaaatt gccgccaatc cgagggcgag aagtgcggtt
     1561 ttgcgtgtgg cggagcggac tgccggtccg ataccggaac aatcacagag aaaaacgtct
     1621 gaatggcaat gaacaaattg aatttccttc tgctgcttgc ggtgtgcgtt tccgcttttt
     1681 ccgttgtgat gcagcaaaac cagtacaggc tcaacttcac agctttggat aaggcgaaaa
     1741 aacaggaaat cgccttggag caggattatg cgcaaatgag gctgcaacag gcgcgtttgg
     1801 cgaaccacga agcgatcagg gcggcggcag aaaaacaaaa cctccatccg ccggtttcgg
     1861 gcaatacctt tatggtggag catcaaagat agaagcagcc tgtgtgccgg aatcggattc
     1921 ctgcgtcagg ataataataa cgagaagtaa aaatgttgat taagagcgaa tataagcctc
     1981 ggatgctgcc caaagaagag caggtcaaaa agccgatgac cagtaacgga cggatcagct
     2041 tcgtcctgat ggcaatagcg gtcttgtttg ccggtctgat tgcccgcgga ctgtatctgc
     2101 agacggtaac gtataacttt ttgaaagaac agggcgacaa ccggattgtg cggactcaaa
     2161 cattgccggc tacacgcggt acggtttcgg accggaacgg tgcggttttg gcgttgagtg
     2221 cgccgacgga gtccctgttt gccgtgccta aagagatgaa ggaaatgccg tctgccgcac
     2281 aattggaacg cctgtccgag cttgtcgatg tgccggttga tgttttgagg aacaagctcg
     2341 aacagaaagg caagtcgttt atctggatta agcggcagct cgatcccaag gttgccgaag
     2401 aggtcaaagc cttgggtttg gaaaactttg tatttgaaaa agaattaaaa cgccattacc
     2461 cgatgggcaa cctgtttgca cacgtcatcg gatttaccga tattgacggc aaaggtcagg
     2521 aaggtttgga actttcgctt gaagacagcc tgcatggcga agacggcgcg gaagtcgttt
     2581 tgcgggaccg gcagggcaat attgtggaca gcttggactc cccgcgcaat aaagccccga
     2641 aaaacggcaa agacatcatc ctttccctcg atcagaggat tcagaccttg gcctatgaag
     2701 agttgaacaa ggcggtcgaa taccatcagg caaaagccgg aacggtggtg gttttggatg
     2761 cccgcacggg ggaaatcctc gccttggcta acacgcccgc ctacgatccc aacaggcccg
     2821 gccgggcaga cagcgaacag cggcgcaacc gtgccgtaac cgatatgatc gaacccggtt
     2881 cggcaatcaa accgtttgtg attgcgaaag cattggatgc gggcaaaacc gatttgaacg
     2941 aacggctgaa tacgcagcct tataaaatcg gaccgtctcc cgtgcgcgat acccatgttt
     3001 acccctcttt ggatgtgcgc ggcatcatgc agaaatcgtc caacgtcggc acaagcaaac
     3061 tgtctgcgcg tttcggcgcc gaagaaatgt atgacttcta tcatgagttg ggcatcggtg
     3121 tgcgtatgca ctcgggcttt ccgggcgaaa ctgcaggttt gttgagaaat tggcgcaggt
     3181 ggcggcctat cgaacaggcg acgatgtctt tcggttacgg cctgcaattg agcctgctgc
     3241 aattggcgcg cgcctatacc gcactgacgc acgacggcgt tttgctgccg gtcagctttg
     3301 aaaaacaggc ggttgcgccg caaggcaaac gcatattcaa agaatcgacc gcgcgcgagg
     3361 tacgcaatct gatggtttcc gtgaccgagc cgggcggcac cggtacggcg ggtgcggtgg
     3421 acggtttcga tgtcggcgcg aaaaccggca cggcgcgcaa gttcgtcaac gggcgttatg
     3481 ccgacaacaa acacatcgct acctttatcg gttttgcccc cgccaaaaac ccccgtgtga
     3541 ttgtggcggt aaccattgac gaaccgactg cccacggtta ttacggcggc gtagtggcag
     3601 ggccgccctt caaaaaaatt atgggcggca gcctgaacat cttgggcatt tccccgacca
     3661 agccactgac cgccgcagcc gtcaaaacac cgtcttaatc cgagtatcaa cgagattgtt
     3721 ttatgttcag caagttaacc cctttggctg aaaccggcat cccgaccctg tcgtgtgcaa
     3781 acgcagcagg gcgtttgttg cattcagaca gccgccaaat caaacaaggc gatattttcg
     3841 ttgcctgtcc gggcgaatat gccgacggcc gcagttatat ccccgccgcc gttgccaacg
     3901 gcgcggcttt tgttttttgg gacgacgacg gcaaattcgc gtggaatccc gaatggaaag
     3961 tccccaatca aggcatcaaa gatttgaaac accgtgccgg catattggcg gcgcaagttt
     4021 acggcaacgt ttcagacggt ctcaaattct ggggcgtaac cggaaccaac ggcaaaacct
     4081 ccatcacgca atggctggcg caagctgccg atttgttggg cgaaaaaacc gccattgtcg
     4141 gcacggtcgg caacggcttt tggggtgcat tggaagaaac cacgcatacc acacccgccc
     4201 ccgtcgatgt ccaaaccctg ctctaccgtt tccgtcaaca aggcgcaaca gccgccgcga
     4261 tggaagtctc cagccacggt cttgaccagt cgcgcgtcaa cggcgtgcca ttccgcagcg
     4321 caatctttac caatctcacc cgagaccacc tcgactacca cggcacgatg gaagcctatg
     4381 gcgccatcaa gtcgcgcctg ttttactggc atggcttgaa acacgccgtt atcaatgtag
     4441 atgacggata cggcgcagaa ctcataggcc gtctgaaaaa agactgcccc gatttggccg
     4501 tttatagcta cggcttcagc gaacacgccg acatccgcat taccgacttt accgcctctt
     4561 cagacggcat agaagccgta ttccgaaccc cgtggggtga agggaaatgc cgcacacgcc
     4621 tgctcggacg gttcaacgcg caaaacctcg ccgcctgcat cgccttgctg tgcgccaacg
     4681 actatccgtt ggataaggta ttggatgtgc tggcaaaaat ccgtcccgct tcagggcgca
     4741 tggactgcat catgaacagc ggcaagccct tggtcgtcgt cgattacgcc cacacgcccg
     4801 acgcattgga aaaagcactc gccaccttgc aggaaatcaa accgcagggt gcggctttat
     4861 ggtgcgtatt cggttgcggc ggcaaccgcg atcgcggcaa acgcccgctg atgggcgcgg
     4921 cagccgtaca gggcgcggat aaagtcgtcg tcaccagcga caacccgcgt ttggaaaatc
     4981 cgcacgacat catcaacgac atcctgcctg ccgttcccgc gcccgaatgc gtcgaagccg
     5041 accgtgccgc cgccgtccgt tatgcggttg aacaagccgc cgcaaacgac atcatcctga
     5101 ttgccggcaa agggcatgaa aactatcagg atgtacaagg cgtgaagcac cgtttttccg
     5161 atcttgaaat cgtcggacag gctttgttaa ctcgtaaata atgggatatt cggacggcat
     5221 cgtatgaaac aatccgcccg aataaaaaat atgaatcaga cattaaaaaa tacattgggc
     5281 atttgcgcgc ttttagcctt ttgttttggc gcggccatcg catcaggtta tcacttggaa
     5341 tatgaatacg gctaccgtta ttctgccgtg ggtgctttgg cttcggttgt atttttatta
     5401 ttattggcac gcggtttccc gcgcgtttct tcagttgttt tactgattta cgtcggcaca
     5461 accgccctat atttgccggt cggctggctg tatggtgcgc cgtcttatca gatagtcggt
     5521 tcgatattgg aaagcaatcc tgccgaggcg cgtgaatttg tcggcaatct tcccgggtcg
     5581 ctttattttg tgcaggcatt atttttcatt tttggcttga cagtttggag atattgtgta
     5641 tcgggggggg gtatttgctg acgtaaaaaa ctataaacgc cgcagcaaaa tatggctgac
     5701 tatattattg actttgattt tgtcctgcgc ggtgatggat aaaatcgcca gcgataaaga
     5761 tttgcgagaa cctgatgccg gcctgttgtt gaatattttc gacctgtatt acgatttggc
     5821 ttccgcgccg gcacaatatg ccgccaagcg tgcccacatt ttggaagcag caaaaaaagc
     5881 gtcaacatgg catatccgtc atgttgcgcc caagtataaa aattatgttg tggttatcgg
     5941 tgagagcgcg cgttcggatt atatgaatgt ttacggtttc ccattgcccg atacgccttt
     6001 tttgagtcag accaaagggc tgttgataaa cggttaccaa tcgaccgccc acgcgacgaa
     6061 tctttcgctg ccgcagactt tggggctgcc gggagaaccg aacaataaca tcgtcagctt
     6121 ggcgaagcag gcgggttttc ggacggcgtg gctgtctaat caaggaatgt tggggcattt
     6181 tgccaacgaa atttccacct atgccctacg cagcgattat ccgtggttta cccaaagggg
     6241 tgattatggc aaaagcgcgg ggttgagcga ccgccttttg ttgccggcgt tcaaacgggt
     6301 tttgatagga aatgcaggca cgaagcctcg gctgattgtg atgcacctga tgggttcgca
     6361 cagtgatttt tgcacacgtt tggataagga tgcgcggcgg tttcagtatc aaactgaaaa
     6421 aatatcctgc tatgtttcca ccatcgcgca aaccgataaa tttttagaag atacagttaa
     6481 gatattgaat gaaaataaag aaagctggtc tttggtttac ttttccgacc acggtttgat
     6541 gcatgtcggt aaaggcggcg agcgaacgtt gacacatggt gcgtggaagc gtcaaagcta
     6601 cggcgtgccg ctggttaaaa tttcgtccga tgacacgcgg cgcgaaatga ttaaagtgag
     6661 gcgcagcgcg tttaattttt tacgcggatt cggcagttgg acgggtatcg aaaccgacga
     6721 gttgcccgat gacggctatg atttttgggg gaatgttccc gatgtgcagg gcgaaggcaa
     6781 taaccttgcc tttatcgacg gactgcccga cgaccccgcg ccgtggtatg cgggaaaagg
     6841 caaatcgact aaaaatacgt ctaaaaaatg atacgtacag aaaaaatgcc gaatgagaat
     6901 gggaaaataa tctgtgtttt accacagcaa aacaggcgat aaaaaaaatc agccgctacc
     6961 gatgtgtccg ccgcccgaat attaacgaaa gtaaatatga aaccactgga cctaaatttc
     7021 atctgccaag ccctcaagct tccgatgccg tctgaaagca aacccgtgtc gcgcatcgta
     7081 accgacagcc gcgacatccg cgcgggcgat gtgtttttcg cattggcggg cgggcggttt
     7141 gatgcgcatg attttgttga agacgtattg gctgctggtg cggcggcggt tgtggtttcg
     7201 cgcgaagatt gcgttgcaat ggatggcgcg ttgaaagtcg atgacacgct tgccgcattg
     7261 caaacgctgg caaaggcgtg gcgcgagaat gtgaacccgt ttgtgttcgg tattaccggc
     7321 tcgggcggta agacgacggt gaaggaaatg ttggctgcgg tattgcgccg ccgtttcggc
     7381 gataatgccg ttttggcgac ggcaggcaac ttcaacaacc acatcggatt gccgttgact
     7441 ttgttgaaat taaacgaaaa acaccgctat gccgtgattg aaatgggtat gaatcatttt
     7501 ggcgaactgg cggttttgac gcaaatcgcc aaacctgatg ccgccttggt taacaacgcc
     7561 ctgcgtgccc atgtcggctg cggtttcgac ggagtgggcg atattgccaa agcgaaaagc
     7621 gagatttatc aaggcttatg ttcagacggc atggcactga ttcctcaaga agatgccaat
     7681 atggctgtct tcaaaacggc aacgcttaat ttgaatacgc gcactttcgg cgtcgatagc
     7741 ggcgatgtcc acgcggaaaa tatcgtgctg aaaccgttgt cgtgcgaatt tgatttggtg
     7801 tgcggcgatg agcgcgccgc cgtggtgctg cctgttcccg gccgccacaa tgtccacaac
     7861 gccgccgctg ccgccgcgct ggctttggct gcgggtttga gtttgaacga tgtggcggaa
     7921 ggtttgaaag gcttcagcaa tatcaaaggc cgtctgaacg tcaaatccgg aatcaagggc
     7981 gcaaccctga ttgacgatac ttataatgcg aaccctgaca gcatgaaagc tgcgattgac
     8041 gtgttggcgc gtatgcctgc gccgcgtatt ttcgtgatgg gcgatatggg cgaactgggt
     8101 gaggacgaag ccgccgccat gcacgccgaa gtcggcgcgt atgctcgcga ccaaggcatc
     8161 gaagcggctt attttgtcgg cgacaacagc gtcgaagcgg cggaaaaatt tggcgcggac
     8221 ggtttgtggt tcgccgccaa agacccgttg attcaagtgt tgcgccacga tttgcccgaa
     8281 cgcgccaccg tgttggtgaa aggttcgcgc tttatgcaga tggaagaagt ggtcgaggca
     8341 ttggaggata agtgaaaatg aaaagtcgac gtttttttaa agccttattg ttgattgccg
     8401 cgctggtcgg cgcgttttat gccggaatgc agacgcaggc gtatctttat gaagatttat
     8461 gtttagactt gggtggcggc aaaaatccgg ggagttaccc gatttgcgtg attgagaaag
     8521 tccctgcacg ttaatctgca aaagccgtcc gaaaccttgc cgggcggcaa gccaacctca
     8581 aacgggcgca ggcccga
//
LOCUS       DAXIFD010000085         8514 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.085, whole genome shotgun sequence.
ACCESSION   DAXIFD010000085 DAXIFD010000000
VERSION     DAXIFD010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8514
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.085"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..194
                     /locus_tag="ACFOCN_001323"
     CDS             <1..194
                     /locus_tag="ACFOCN_001323"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970463.1"
                     /translation="GFEGREKGNAPRGKCVRRQEGGYNFLLACLLACLLACLLGVCLF
                     RILGGAADTVYRAAFFRFG"
     gene            complement(249..1967)
                     /gene="argS"
                     /locus_tag="ACFOCN_001324"
     CDS             complement(249..1967)
                     /gene="argS"
                     /locus_tag="ACFOCN_001324"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HFC6970464.1"
                     /translation="MNLHQTVEHEAVTAFAAAGIADNPIVLQPTKNAEHGDFQINGVM
                     GAAKKAKQNPRELAQKVAEALADNAVIESAEVAGPGFINLRLRPEFLARNIYAALNDA
                     RFGIAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSISRVLAFMGNTVVRQNHVG
                     DWGTQFGMLVAYLVEQQKDNAAFELADLEQFYRAAKVRFDEDPTFADTAREYVVKLQG
                     GDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKYNDDLQAVVDDLVQKGL
                     AVEDDGAKVVFLEEFKNKEGEPAAFIVQKQGGGFLYASTDLACLRYRVGTLHADRLLY
                     VVDHRQALHFEQLFTTSRKAGYLPENVGAAFVGFGTMMGKDGKPFKTRSGDTVKLVDL
                     LTEAVERATALVKEKNPELGVDEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWNAMLS
                     FEGNTAPYLQYAYTRVQSVFRKAGEWDATVPTVLTEPLEKQLAAELLKFEDVLQSVAD
                     TAYPHYLAAYLYQIATLFSRFYEACPILKSEGATRNSRLQLAKLTGDTLKQGLDLLGI
                     DVLDVM"
     gene            complement(2059..3267)
                     /gene="pncB"
                     /locus_tag="ACFOCN_001325"
     CDS             complement(2059..3267)
                     /gene="pncB"
                     /locus_tag="ACFOCN_001325"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HFC6970465.1"
                     /translation="MTGIIHSLLDTDLYKFTMLQVVLHQFPQTHSLYEFRCRNASTVY
                     PLADIKEDLEAELDALCRLRFTHDELGYLRSLRFIKSDFVDYLELFQLQRRFVEVGTD
                     AEGRLNIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEI
                     AATQNPDDPPFLISDFGTRRRYNLPWQEHVIRTLLEAAPGIVRGTSNVYLAKKLGITP
                     IGTMAHEFLQAFQALDVQLRNFQKAALESWVHEYRGDLGIALTDVVGMDAFLRDFDLY
                     FAKLFDGLRHDSGDPYEWGDKAYTHYKKLKIDSRTKMLTFSDGLDIDRSWALHQYFKD
                     RFKTSFGIGTNLTNDMGHTPLNIVLKLVECNGQSVAKLSDSPGKTMTNNNTFLAYLRQ
                     VFGVPAVQTS"
     gene            complement(3308..4162)
                     /locus_tag="ACFOCN_001326"
     CDS             complement(3308..4162)
                     /locus_tag="ACFOCN_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HFC6970466.1"
                     /translation="MPPIPAPSAPSEHTVAWVFGQPVTDLPQDLFIPPDALKVVLGSF
                     QGPLDLLLYLIRKQNIDVLDIPMVKITEQYLHYIAQIEAYQFDLAAEYLLMAAMLIEI
                     KSRLLLPRTETVEDEEADPRAELVRRLLAYEQMKLAAQGLDALPRAGRDFAWAYLPLE
                     IAVEAKLPEVYITDLTQAWLGILSRAKHTRSHEVIKETISVRAQMTAILRRLNGHGIC
                     RFHDLFNPEQGAAYVVVNFIALLELAKEGLVGIVQEVGFGEIRISLNHEGAHSDGISG
                     TRGGRDVF"
     gene            complement(4407..5183)
                     /locus_tag="ACFOCN_001327"
     CDS             complement(4407..5183)
                     /locus_tag="ACFOCN_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6970467.1"
                     /translation="MSDNALTSSRRFGGIARLYGDSALAHFSQAHVCVVGVGGVGSWA
                     VEALARTGIGRLTLIDLDNVAESNVNRQLHALTGDFGKAKVTALRERVAQINPGCQVF
                     EIEDFVTEDNLPEYFGKGFDFVIDAIDQVRVKAAMAAYFVERKQPFVLSGGAGGQKNP
                     ALIQTADLSRVTHDPLLANLRYTLRKRYGFSRDTKANMRVPCVYSTENIVPPQSREAC
                     SADAAPQGLSCAGYGASMLVTASFGLYCAQAAVEHIADKK"
     gene            5400..5864
                     /locus_tag="ACFOCN_001328"
     CDS             5400..5864
                     /locus_tag="ACFOCN_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HFC6970468.1"
                     /translation="MYKHLVVAVDGSETSINALKHAAELAGVNGARLTLVHVANPAEY
                     MALAPEFLQHESYEAAAVAQGNEVLDAAERTARELGVENTVKHLLVANKGAREMAQDL
                     VDYADENGADLLVLGTHGRTGLMHLLMGSFAETVMRQSHLPLLIIRSKAEEA"
     gene            5946..6674
                     /gene="rph"
                     /locus_tag="ACFOCN_001329"
     CDS             5946..6674
                     /gene="rph"
                     /locus_tag="ACFOCN_001329"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0009022 - tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HFC6970469.1"
                     /translation="MPDYIRISRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTA
                     SIDENVPPFLRGKNQGWVTAEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLR
                     AVVDMEKLGERQILIDCDVIQADGGTRTASITGAFVALQIAVGKLVSDGILSENPIRE
                     AVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELG
                     KLVALAQKGIGELLQHQQNALSAA"
     gene            6876..8093
                     /locus_tag="ACFOCN_001330"
     CDS             6876..8093
                     /locus_tag="ACFOCN_001330"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HFC6970470.1"
                     /translation="MALIVHKYGGTSVGSPERIKNVAKRVAKARAEGHDIVVVVSAMS
                     GETNRLVALAHEMQEHPDPRELDVVLSTGEQVTIGLLAMALKDIGVEAKSYTGWQVAL
                     KTDTAHTKARIESIDDEKMRADLAAGKVVIVAGFQGISSEGDISTLGRGGSDTSAVAL
                     AAALKADECQIYTDVDGVYTTDPRVVPEARRMDTVTFEEMIELASLGSKVLQIRSVEF
                     AGKYKVRLRVLSSLQDGGNGTLITFEEDDNMERAAVTGIAFDKNQARINVRGVPDKPG
                     VAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAAS
                     IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYME
                     LATRVLHKAFNLG"
BASE COUNT         1924 a         2165 c         2434 g         1991 t
ORIGIN      
        1 gcggatttga ggggcgggaa aaggggaatg cgccgcgcgg aaagtgcgtg cgtcggcagg
       61 aagggggtta taattttttg cttgcttgct tgcttgcttg cttgcttgct tgcttgcttg
      121 gcgtttgttt gtttcgcatt ttgggagggg cggcggatac ggtgtatcgc gccgcttttt
      181 tcagattcgg atgaggatga tccgccagtt gattgcgggg ctgttgtccg caatcgggcg
      241 gtgcggtttt acattacgtc caacacatca atgcccagca aatccaagcc ttgtttcagc
      301 gtgtcgccgg tgagttttgc cagttgcagg cggctgttgc gggttgcgcc ttctgatttc
      361 agaatcgggc aggcttcgta gaagcggctg aacaaggtag cgatttgata gaggtaggcg
      421 gcgaggtagt gcggatacgc cgtgtccgcc acgctttgca gcacgtcttc gaatttcagc
      481 agctcggcgg ccagttgttt ttccaaaggt tcggtcaaaa cggttggcac ggttgcgtcc
      541 cattcgcctg ctttgcggaa cacgctttgc acgcgggtgt aggcatattg caggtagggg
      601 gcggtattgc cttcaaacga gagcatggcg ttccagtcga acacataatc gctggtgcgg
      661 tttttgctca aatcggcgta tttgaccgcg ccgatgccga cggttttgcc gattttagcg
      721 gcttcatcca cgcccaattc gggatttttt tctttcacca aagcggtggc gcgctcgacg
      781 gcttcggtca gcaggtcaac cagtttcacg gtgtcgccgc tgcgcgtttt gaacggtttg
      841 ccgtctttgc ccatcatcgt gccgaagccg acaaatgccg cgccgacgtt ttccggcaga
      901 tagcctgctt tgcgagaagt ggtaaagagt tgctcgaagt gcagggcttg gcgatggtcg
      961 acaacgtaca gcaggcggtc ggcatgaagc gtaccgacgc ggtagcgcag gcacgccaaa
     1021 tcggtggaag cataaaggaa gccgccgcct tgtttttgta cgataaatgc ggcaggttcg
     1081 ccttctttgt ttttgaattc ctccaagaat acgactttcg cgccgtcgtc ttcgaccgct
     1141 agaccttttt gaaccaaatc atcgaccacg gcttgcaaat cgtcgttgta tttcgattcg
     1201 cccgccacgt cttcagggcg cagcttcaag cccagcgtgt cgtacacggc ttgggcgtgc
     1261 gagagtgaaa tatcgacaaa ctgtttccac aacgccaaca cggtttcatc gccgccttgc
     1321 agtttcacaa cgtattcgcg tgcggtgtcg gcaaaggtag ggtcttcgtc aaagcgtact
     1381 ttggcggcgc ggtaaaactg ctccaagtcc gctagctcga acgctgcgtt gtctttttgc
     1441 tgctcgacca aataagcgac caacatgccg aactgcgtac cccagtcgcc gacgtggttt
     1501 tggcggacga cggtgttgcc cataaatgcc aacacgcgcg aaatgctgtc gccgatgata
     1561 ctggaacgca ggtggccgac gtgcatttct tttgccagat tgggcgagga atagtcgata
     1621 acgacggttt gcggtttgtc ggtttttgct atgccgaaac gcgcgtcgtt taaggcagca
     1681 taaatgtttc gggcaaggaa ttcggggcgc aggcgcaggt tgatgaagcc cggaccggct
     1741 acttccgcgc tttcgattac ggcgttgtcg gctaatgctt cggctacctt ttgcgccaat
     1801 tcgcgcggat tttgtttggc ttttttcgcc gcacccatca cgccgttaat ttggaaatcg
     1861 ccgtgttcgg cgtttttggt cggctgcaaa acaatagggt tgtcggcgat gcctgcggcg
     1921 gcaaaggcgg tgacggcttc gtgttcgacg gtttggtgta ggttcatgaa gttcggtctt
     1981 tcggttaaat tcaaatcagt cggtatttta aaagaatttg tacggcagca ataggaattg
     2041 tgggattgtt gccggggact aggatgtttg tacggcggga acgccgaata cctgcctcag
     2101 gtaggcaagg aaagtattgt tgttggtcat ggtttttccg ggagaatcgg agagcttggc
     2161 gacggactga ccgttgcatt cgaccagttt caacacgata ttcaaaggcg tatgccccat
     2221 atcgttggtc aggttggtgc ctatgccgaa actggttttg aagcggtctt tgaaatattg
     2281 gtgcaaagcc caagatcggt cgatatccag tccgtcggag aaggtcagca ttttggtccg
     2341 gctgtcgatt ttgagttttt tatagtgcgt gtaggctttg tccccccatt cgtaggggtc
     2401 tccgctatca tgccgcaaac cgtcgaagag cttggcgaaa taaaggtcga aatcgcgcag
     2461 gaaggcatcc atgccgacca cgtcggtcaa tgcgataccg aggtcgccgc ggtattcgtg
     2521 tacccagctt tcgagcgcgg ctttttggaa attccgcaat tgtacgtcga gggcctggaa
     2581 tgcctgcagg aactcgtgcg ccatggtgcc gatgggggta atgccgagtt ttttggcgag
     2641 ataaacgttg ctggtcccgc gtacgatgcc gggggcggct tcaagcaggg tgcggatgac
     2701 gtgttcctgc catgggaggt tgtagcggcg gcgtgtgccg aagtcggaaa tcaggaaggg
     2761 cggatcgtcc ggattctgtg tggcggctat ttctttcaga cgcgcggctt tggcttgaag
     2821 ccgacgttca ccttcttcta tgactgcagg ggtttccaag cggcggaagt aaagttcgtt
     2881 gacaatggca aggatgaaga tttcaaagaa catcgcttga atcatggggc cttcgatacg
     2941 gatgttcaga cggccttcgg catcggtgcc gacttcgaca aagcggcgtt ggagctggaa
     3001 gagttcgaga taatcgacaa agtcgctttt gatgaaacgc agggagcgca gatagccgag
     3061 ttcgtcgtgg gtgaagcgca gccggcagag cgcgtcgagt tcggcttcca agtcttcctt
     3121 gatgtcggca agcggataga cggtcgaggc gttgcggcag cggaattcgt aaaggctgtg
     3181 cgtctgcgga aactggtgca gaaccacttg cagcatagtg aatttgtaga ggtcggtgtc
     3241 aagcagcgaa tgtatgatgc cggtcatatg gcgtgtctcc cgatttttgg tggcggcttg
     3301 gggcgtatta gaacacatcg cgcccgcccc gtgtgccgga aatgccgtct gaatgtgccc
     3361 cctcatgatt gaggctgatt cggatttctc cgaaaccgac ttcctgtacg attccgacca
     3421 aaccttcttt ggcaagctcc aacagtgcga tgaagttgac gaccacgtaa gccgcgccct
     3481 gttcgggatt gaacaggtcg tgaaacctgc atatcccgtg tccgttcaaa cggcgcagga
     3541 ttgccgtcat ttgcgcgcgc acggagatgg tttctttgat tacttcgtgg ctgcgcgtgt
     3601 gttttgcccg agacaaaata cccagccacg cttgcgtcaa gtcggtaata tagacttcgg
     3661 gcagcttggc ttcgacggca atttccagcg gcaggtaagc ccacgcgaaa tcccgtccgg
     3721 ctcggggcag cgcgtccaaa ccctgcgccg ccagcttcat ctgttcgtaa gccagcaggc
     3781 ggcgcaccaa ctcggcacgc gggtcggctt cttcgtcttc gacggtttcg gtacgcggca
     3841 gcagcaggcg cgatttgatt tcaatcagca tggccgccat aagcaggtat tccgccgcca
     3901 aatcaaactg ataggcttct atttgggcga tgtagtgcag atactgctcg gtaatcttca
     3961 ccatcggaat atcgagaaca tcgatgttct gcttgcggat aaggtagagc agcaaatcca
     4021 aagggccttg aaaactgccc aatacgactt tcagcgcgtc gggcgggata aacaaatcct
     4081 gcggcaaatc ggtaacgggt tggccgaata cccatgcgac agtgtgctcg gatggtgcgg
     4141 atggggcagg gatgggcggc atggcgtgaa tcggtaagtg gattttaata taagtttaca
     4201 aaagaaaaca atctgccgac attcacgcat aatgtggtcg ggcagatgtt cagacggcat
     4261 tataacggct tttaaatgca aatgttttga aaaggagcag gttgtgaata cggttttagg
     4321 cgtgccgatg ttggtttttc tgaaccgaca gcttgattgc cgcgtttgtt caaatgccgt
     4381 ctgaatcctg tttcagacgg cattgcttat tttttgtctg cgatgtgttc caccgccgcc
     4441 tgtgcgcaat atagcccgaa cgaagcggta acgagcatgc ttgcaccgta gccggcgcac
     4501 gacaagcctt gcggagcggc atctgccgaa caagcctccc tagactgcgg cggcacgata
     4561 ttttcggtcg aatacacgca aggcacgcgc atatttgctt tcgtatcgcg gctgaatccg
     4621 tagcgtttcc gcaaggtgta gcgcaggttg gcaagcagcg ggtcgtgggt tacgcggctc
     4681 aaatcggcgg tttggattaa cgccggattt ttttgtccgc ccgcgccgcc gctgaggaca
     4741 aacggttgtt tgcgttccac aaaataagcc gccattgctg ctttgacgcg cacttggtcg
     4801 atcgcgtcga tgacgaaatc aaaacctttt ccgaagtatt ccggcaaatt gtcttcggta
     4861 acgaaatctt caatttcaaa cacttggcat cctgggttga tttgggcgac gcgttcgcgc
     4921 aaggcggtaa cttttgcttt gccgaagtcg ccggtcaggg cgtgcagctg gcggttgaca
     4981 ttcgattcgg caacgttgtc caaatcaatc aaagtcaaac gtccgatgcc cgtccgcgcc
     5041 aaagcctcga ccgcccacga gccgacaccg cccacgccga ctacgcagac gtgtgcctgt
     5101 gaaaagtgcg ccaaggcaga gtctccgtag agtctggcga tgccgccgaa gcgtcgcgaa
     5161 gaggtcaaag cgttgtcgga catggtcgaa tcctgcaaga ttgcgtcaaa tcaaaaagtg
     5221 aacgaaagcc ggcaaaaaat gcctgactgc acggaagcgg catattatac tggaaagcgg
     5281 tcgggctgtt cggctgttgt ataaagcccg acagcgggtc tataatgaaa cggcgcaaac
     5341 tgtccctgcg cccatccgac aagagggcac cgcgaggcgg tgcaaaagga gaatacgata
     5401 tgtacaaaca tctggttgtt gccgttgacg gcagtgaaac gtccatcaat gccctgaaac
     5461 atgccgccga gcttgccggg gtcaacggtg cgcgtctgac tttggtacac gttgccaatc
     5521 ctgccgaata tatggcgctc gcccccgaat ttttgcaaca cgaaagctac gaagccgccg
     5581 ccgtcgcgca aggcaacgaa gttttggatg ccgccgagcg caccgcccgg gaactgggtg
     5641 tggaaaatac cgtcaaacac ctgctggttg ccaataaggg tgcgcgtgaa atggcgcagg
     5701 atttggttga ttatgccgat gaaaacggtg ccgacctgct ggtgttgggt acgcacggac
     5761 gtaccggact gatgcacctt ttaatgggca gttttgccga aacggtaatg cgccaaagcc
     5821 acctgccgct tttgattatc cgcagcaaag ccgaagaggc gtagaaattt tcagtttgaa
     5881 ggccttaaat gtgatttttc atatttaagg ctttttaatt tatctgtttt taacgggagg
     5941 gcagtatgcc tgattacatc cgcatctcgc gcgccgcgga cagcctgcgc gatatcaaaa
     6001 tcacccctca tttcctgccg catacggacg gttcgtgcct tattgaatgc ggcaatacca
     6061 aagtgatttg taccgcttcc atagatgaaa acgtcccgcc gtttctgcgc ggtaaaaacc
     6121 aaggctgggt aacggcggaa tacgggatgc tgcctgcctc aactgcttcc cggatgcgcc
     6181 gcgaagcttc ggcgggcaaa cagtccgggc gcacacaaga aatccaacgc cttatcgggc
     6241 gttcgctacg cgcggtcgta gatatggaaa aactcggcga acgacaaatc ttgattgact
     6301 gcgatgtgat tcaggcagat ggcggtacgc gcacggcttc gattaccggt gcgtttgtcg
     6361 cgctgcaaat cgccgtcggc aaactggttt cagacggcat tttgagtgaa aaccccatcc
     6421 gcgaagccgt tgccgctgtg tcagtaggcg tagtgaacgg cgtgccgctt ttggatttgg
     6481 attatcccga agactccggt tgcgacagtg atgtgaatat cgtcatgacc gcatcgggaa
     6541 aaatcatcga aatccaaggt acggcggaag acgcgccgtt cagtttggac gaattgggca
     6601 aactggttgc actggcgcaa aaaggcatag gcgaactgct gcaacaccag caaaatgcgt
     6661 tgtccgccgc ctgattgtcg tccggatgcc gtctgaaaac cgttcagacg gcattttgtc
     6721 aacaatctga aagaacaggt ttttcgctga ccgctgtcaa acggcaggcg ggaaagcgca
     6781 gtccgttctt gaacttcatg taaaaaatag taataatagc cgcttttcca gcaaaccatg
     6841 ctgcccgacc aatcccacac aagaaagcac gaaacatggc gttaatcgta cataaatacg
     6901 gcggcacatc cgtaggctcg cccgaacgca ttaaaaacgt ggccaaacgt gtcgccaaag
     6961 cccgcgccga aggacacgac atcgtcgtcg tcgtatccgc catgagcggt gaaaccaacc
     7021 gcctggtcgc gttggcgcac gaaatgcagg agcatcccga tccgcgcgaa ttggacgtgg
     7081 ttttgtccac cggcgaacaa gtaaccatcg gccttttggc gatggcattg aaagacatcg
     7141 gcgtggaagc caaaagctac accggctggc aggtcgccct caaaaccgat accgcccaca
     7201 ccaaagcccg catcgaaagc attgatgacg aaaaaatgcg tgccgacctt gccgccggca
     7261 aagtcgtcat cgtcgccggt ttccaaggca tcagcagcga aggcgacatt tccacgctcg
     7321 gacgcggcgg ctccgacacc tccgccgttg cgctcgccgc agccctcaaa gcagacgaat
     7381 gccaaatcta taccgacgtg gacggcgttt acaccaccga cccccgcgtc gtacccgaag
     7441 cgcgccgcat ggatacggta acgtttgaag agatgattga gctggccagc cttggctcga
     7501 aagttttgca aatccgttca gtagaatttg ccggaaaata caaagtgcgc ctgcgcgtac
     7561 tgagcagcct gcaagacggc ggcaacggca ccttaattac ctttgaagag gacgacaata
     7621 tggaaagagc tgccgtaacc ggtatcgcat tcgacaaaaa ccaagcccgc atcaacgtgc
     7681 gcggcgtacc cgacaaaccc ggcgtcgcct atcagatttt aggcgcggtt gccgatgcca
     7741 acatcgaagt cgatatgatt atccaaaatg tcggcagcga aggcacaacc gatttttcct
     7801 ttaccgtacc gcgcggcgat tacaagcaga ctttggaaat cctgtcggaa cgtcaagaca
     7861 gtatcggcgc ggcttctatc gacggcgacg acaccgtgtg caaagtctcc gcagtcggtt
     7921 tgggtatgcg ttcgcacgtc ggtgtagccg ccaaaatctt ccgcacgctc gccgaagagg
     7981 gtatcaacat ccaaatgatt tccacctccg aaatcaaagt ttccgtattg attgatgaaa
     8041 aatacatgga actggcaacc agggtattgc ataaagcctt taatttgggc tgatgtttca
     8101 cggtttgaaa cggacaacgg cactgccttt atcgggcagt gccgttttgt ctgccgcccg
     8161 aatgttcgga cggcatattt tgactttgga acaaaaaata tagtggatta aatttatagt
     8221 ggattaacaa aaatcaggac aaggcgacga agccgcagac agtacaaata gtacggaact
     8281 gattcacttg gtgcttcagc accttagaga atcgttctct ttgagctaag gcgaggcaac
     8341 gccgtactgg ttttgttaat ccactataca tcccgtcatt cccacgaaag tgggaatcta
     8401 gaaatttaat gttgcggcac tagccaaaaa aaccgaaacc gaacggacta gattcccgcc
     8461 tgcgcgggaa tgacggcgga gcggtttctg ttttttccgg taaataccca caag
//
LOCUS       DAXIFD010000086         8500 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.086, whole genome shotgun sequence.
ACCESSION   DAXIFD010000086 DAXIFD010000000
VERSION     DAXIFD010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8500
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.086"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            83..1267
                     /gene="coaBC"
                     /locus_tag="ACFOCN_001331"
     CDS             83..1267
                     /gene="coaBC"
                     /locus_tag="ACFOCN_001331"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HFC6970471.1"
                     /translation="MGKHILLGVTGSIAAYKSCELVRLLKKQGHSVTVVMSRSATEFV
                     SPLTFQALSGNPVLTDTHGGNGSNGMEHINLTRNADVFLIAPASMNTVAKICNGVADN
                     LLTSLAAARKCPLAIAPAMNVEMWLNPANQRNIAQLVSDGITVYMPGLGEQACGENGM
                     GRMPEPAELLDLLPDLWTPKILRGKKILITAGATFEAIDPVRGITNTSSGKMGVALAR
                     ACRAAGAEVSLIHGQLQTALPFGISDTVQAVSAEDMHRAVHRLIEKQDAFISVAAVSD
                     YKVKNRSTQKFKKDKNAKPLSIELDENPDILASIASLPNPPFCIGFAAETENVMAYAR
                     EKRIKKKIPVIVANDVSIAMGKPTNRITIIGDDGELSFPETSKDEAAMQIVERLAVYL
                     NK"
     gene            complement(1334..3490)
                     /locus_tag="ACFOCN_001332"
     CDS             complement(1334..3490)
                     /locus_tag="ACFOCN_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0015969 - guanosine tetraphosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RelA/SpoT family protein"
                     /protein_id="HFC6970472.1"
                     /translation="MPVPQPTAPYDHLTAEARTLLFRTASYLKPEEQVELEKAVAYAF
                     HAHDGQTRKSGEPYITHPIAVATQLALWHMDIQGLCAGVMHDVLEDTGVTKGEMAAVF
                     GNTIAEMVDGLSKLEKLKFEDHAEHQAESFRKLILAMTKDVRVIVVKLADRLHNMRTL
                     GSMRPDKRRRIARETLEIYAQIANRIGLNNAYQELQDLSFQNLHPNRYETLKKAMDKS
                     RKNRQDVVGKVLRAFGQRLVGANIEAKIKGREKNLYGIHQKMMAKKLRFAEVMDIYGF
                     RVIVNSIPACYAALGALHTLYQPKPGRFKDYIAIPKSNGYQSLHTTLVGPYGLPIEVQ
                     IRTKEMDAVAEGGIAGHWSYKSYSKTVDQAVLHTNRWLKNILDLQASSANAIEFLEHV
                     KVDLFPNEIYILTPKGKILTLPKGATPVDFAYAVHTDIGHKTVAARINNIMMPLRTKL
                     KTGDSVEIITSEHAKPNPAWLNFAVSGRARSAIRQYIKNLNRHDAVVLGESLLQKALS
                     SLLPKDVLLSDGIKEKYLADLNDKQTSFEEVLYNVGMGHTLPVYVAMHIAELAGEHFG
                     SEVRLSSIKVDGQESGHIHFAECCHPVPGDSIRLLLVKGKGMIIHRDSCPTLLKSDPE
                     QQLDADWENMNGQNYRVGLQVQSEDSHGLLALMAQAISDSGADIESVETPSKSQSGTE
                     GFVEFKFLLKVKNLDQLNQIIQNLHSIPYIRKVIRS"
     gene            complement(3583..3789)
                     /gene="rpoZ"
                     /locus_tag="ACFOCN_001333"
     CDS             complement(3583..3789)
                     /gene="rpoZ"
                     /locus_tag="ACFOCN_001333"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HFC6970473.1"
                     /translation="MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDVRNN
                     KPTVTALREIAAGHIGTELLTRNK"
     gene            complement(3848..4465)
                     /gene="gmk"
                     /locus_tag="ACFOCN_001334"
     CDS             complement(3848..4465)
                     /gene="gmk"
                     /locus_tag="ACFOCN_001334"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HFC6970474.1"
                     /translation="MSAYRKGNIFIISAASGTGKTTLVSRLLANHNGLRVSVSHTTRP
                     PREGEVNGVHYHFVSKEEFESLIAQEAFLEYADVFGNYYGTSAEGVNALAAAGYDVIL
                     EIDVQGAAQVRNALPEAVGIFILPPSFDVLAARLNGRGTDSREVIQRRLSKARHEIEQ
                     SVLFDFVVVNDDLARAEEDLRHIVNACRLKRSRQLGFIADLLENS"
     gene            4593..5192
                     /locus_tag="ACFOCN_001335"
     CDS             4593..5192
                     /locus_tag="ACFOCN_001335"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HFC6970475.1"
                     /translation="MALKTSNLEHAMLVHPEAMSVGALADKIRKIENWPQKGILFHDI
                     TPVLQSAEYFRLLVDLLVYRYMDQKIDIVAGLDARGFIIGAALAYHLNVGFVPIRKKG
                     KLPFETVSQSYALEYGEAAVEIHTDAVKPGSRVLLVDDLVATGGTMLAGLELIRKLGG
                     EIVEAAAILEFTDLQGGKNIRASGAPLFTLLQNEGCMKG"
     gene            complement(5238..6026)
                     /locus_tag="ACFOCN_001336"
     CDS             complement(5238..6026)
                     /locus_tag="ACFOCN_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HFC6970476.1"
                     /translation="MNPKIVFFDIDDTLYRKYTDTLRPSVKTAVAALRGKGILTALAT
                     GRSLATIPEKVRDMMAETGMDAVVTINGQFALLHGKTVHEVPMDAGLMGRVCAHLDGL
                     GMDYAFVGGEGIAVSALSECVCRALKHIASDFFADKDYFSSKPVYQMLVFAEENEMPL
                     WSDIVEREGLKTVRWHEEAVDLLPAGASKTDGIRSVVEALGLEMADVMAFGDGLNDVE
                     MLSEVGFGVAMGNGEQAAKEAAKYVCPSVDEDGVLRGLQDLGVI"
     gene            6351..7706
                     /gene="yegQ"
                     /locus_tag="ACFOCN_001337"
     CDS             6351..7706
                     /gene="yegQ"
                     /locus_tag="ACFOCN_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HFC6970477.1"
                     /translation="MKAPELLLPAGGLERMRAAYDYGADAVYAGSPRYSLRARNNEFA
                     KLNVLEQGIKEAHERNKKFFLTVNTLPHNSKLKTFVSDMEPLIAMKPDALIMADPGLI
                     MTVREKWPEMPIHLSVQANTTNYWGVKFWQNIGVERIILSRELSMEEIAEIRQQCPDI
                     ELEVFIHGALCIAYSGRCLLSGYFNHRDPNQGTCTNSCRWDYKVHNATESDAGDARLL
                     QGFNFEKAQEEANQNFEGINGQKRHPYADKVFLIEESNRPGEMMPIMEDEHGTYIMNS
                     KDLRGIEVVEKLAKIGVDSLKVEGRTKSLYYVARVAQSYRKAIDDAVAGRPFDYSLLS
                     ELEGLANRGYTSGFLERHHTQDYQNYLTGHSTAKQSQYVGHVTEIDKNGWATIEVKNR
                     FAVGDSLEIIHPNGNQTIKLEQMTRKGQPVDVAPGNGIQVKIPNMRGKEKALIARVLN
                     P"
     gene            7840..8316
                     /locus_tag="ACFOCN_001338"
     CDS             7840..8316
                     /locus_tag="ACFOCN_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease"
                     /protein_id="HFC6970478.1"
                     /translation="MPAVCQSGSAPKNAHTASAGTPAGESCKVIRDDTAGSGKNIIYR
                     CSNGQAAINAAIADGVLESGIPVSFGGGGVPVANGRNLVTRQAANGVGKSDSEACEHA
                     LINAARKFQQTAGKLGGRSVTGFHSYFDKQPLQGGQYDCQTGSFHVRVVMRANVVR"
BASE COUNT         2165 a         2327 c         1998 g         2010 t
ORIGIN      
        1 ttgtatccaa acggtatcta atgtatccac actttgttat agaatggctg ctgttttttc
       61 ttcgtaatta gaaattgtca aaatgggcaa acatattctt ttaggtgtaa cgggcagtat
      121 tgcggcgtat aagtcttgcg agttggttcg tctgctgaaa aaacaggggc attcggttac
      181 ggtggttatg agccgctcgg caactgaatt tgtttctccg ctgacttttc aggctttaag
      241 cggcaatcct gtcctgaccg acacgcacgg cggcaacggt tcaaacggta tggaacatat
      301 caacctgacc cggaatgcgg atgtttttct gattgcgccg gcaagtatga ataccgtggc
      361 aaaaatctgt aacggcgtgg cagataacct actgaccagt ctggcagccg cacggaaatg
      421 tccgcttgcc atcgctcccg cgatgaatgt ggaaatgtgg ctcaaccctg ccaaccaacg
      481 gaatatcgca caactggttt cagacggcat tactgtctat atgccgggct tgggcgaaca
      541 ggcttgcgga gaaaatggca tgggaaggat gccggaacct gccgaattgc tggatttgct
      601 tccggacttg tggacaccga aaattttaag gggcaagaaa atcttgatta ccgcaggtgc
      661 gacatttgaa gccattgacc ctgtcagggg catcacaaat acctccagcg gaaaaatggg
      721 ggtagctttg gcgcgggcgt gccgtgccgc cggtgcggaa gtcagcctga ttcacggaca
      781 gcttcaaacc gcgctgcctt tcggcatatc cgatacggtt caagccgtca gcgctgaaga
      841 tatgcatcgc gcagtgcatc gtttgattga aaaacaagat gcttttattt ctgttgccgc
      901 cgtctcagac tataaggtta aaaacaggag tacacaaaaa ttcaaaaaag ataaaaatgc
      961 caaaccgtta tccatcgaat tggatgagaa ccccgatatt ttggcttcta ttgcctcatt
     1021 gccgaacccg ccgttctgca tcggttttgc cgctgaaacg gagaatgtaa tggcatatgc
     1081 acgagaaaaa cgtattaaga aaaaaatacc ggtgatagtt gccaatgatg tttcaatcgc
     1141 gatgggcaaa ccgaccaacc ggattaccat tatcggggac gacggggaac tatcttttcc
     1201 cgaaacaagt aaagatgaag cggcgatgca gattgttgaa aggcttgccg tatatttgaa
     1261 caaataagca attgaacgga taaaccataa aacgggttgc ctgttaatca aaaggcaacc
     1321 cgttttacct gcttcaactt ctgatgactt tgcggatata tggaatacta tgcagatttt
     1381 gaataatctg attcaactga tccaaattct tgactttcaa taagaatttg aattcgacaa
     1441 aaccttccgt tcccgactgg gatttagacg gtgtttcgac cgactcgatg tccgcaccgg
     1501 aatcggaaat cgcttgcgcc attaatgcca acaggccgtg gctgtcttcc gattggactt
     1561 gaagcccgac acggtagttc tgcccgttca tattttccca gtctgcatcc agctgctgtt
     1621 cgggatcgga cttcaacaac gtcgggcagc tatccctatg gataatcatg ccttttccct
     1681 taaccaacag caaacggatg gaatcgccgg gaacagggtg gcagcactct gcaaaatgaa
     1741 tatgcccgct ttcctgacca tcgactttaa tggaactgag cctgacctcg ctgccgaaat
     1801 gctcccctgc caactcagca atgtgcatgg cgacataaac aggcagggta tgccccatcc
     1861 ctacgttgta cagcacttct tcaaacgatg tctgcttgtc gttgagatcg gcaagatatt
     1921 tttccttgat gccgtctgaa agcaggacat ctttgggcag caaactggac agggcttttt
     1981 gtaagaggct ctctcccaaa acgaccgcat cgtgccggtt aaggttttta atatattggc
     2041 gtatggcact gcgcgccctg ccggacacgg cgaaattcaa ccacgcggga ttgggtttgg
     2101 cgtgttcgga tgtgataatt tcaacagaat caccggtttt gagcttcgta cgcaacggca
     2161 tcatgatatt gttgatacgt gcggcaacgg ttttgtgccc gatatcggta tgcaccgcat
     2221 aagcaaaatc gacaggcgtt gcccctttgg gcaaagttag gatttttcct tttggcgtaa
     2281 ggatgtagat ttcgttcgga aacaaatcga ctttgacgtg ttcgagaaac tcaatggcat
     2341 tggcactgct tgcctgcaaa tctaagatat ttttcagcca ccggtttgtg tgaagcaccg
     2401 cctgatcgac cgtcttagaa tatgatttat agctccaatg tccggcgatt ccaccttcgg
     2461 caacagcatc catttccttg gtacgtatct gaacttcaat cggcaagccg taagggccga
     2521 ccaaagtcgt atgcagactt tgatacccgt tgcttttcgg aatggcgata tagtctttga
     2581 accgcccggg cttgggctga tagagggtgt gcaatgcgcc gagtgcggca taacaggctg
     2641 gaatgctgtt gacaatgacg cggaaaccgt aaatatccat aacctcggca aagcgcagct
     2701 ttttcgccat cattttctga tggatgccgt acaggttttt ttccctgcct ttgattttgg
     2761 cctctatatt cgcgcctacc agccgctggc cgaatgcgcg caagactttg ccgacaacgt
     2821 cctgccggtt cttccggctc ttgtccatcg ctttttttaa agtctcgtag cggttgggat
     2881 gcaggttttg gaacgataaa tcctgaagct cttgatatgc gttattcaaa cctatacggt
     2941 tggcaatctg tgcatagatt tcaagggttt cccttgcaat ccggcggcgt ttgtccgggc
     3001 gcatcgaacc gagtgtccgc atattatgca gacggtcggc aagtttaacg acaatcacgc
     3061 gcacatcttt ggtcattgcc aaaatcagtt tgcggaaact ctccgcctga tgttccgcat
     3121 gatcttcaaa tttgagtttt tcgagtttgg acagaccgtc caccatctcg gcaatcgtat
     3181 tgccgaacac cgccgccatt tccccttttg tcacgcccgt atcttccaat acgtcgtgca
     3241 tcacgcctgc acacagaccc tgtatgtcca tatgccaaag ggcgagctgc gtcgcaacgg
     3301 caattggatg cgtaatgtat ggttcgccac ttttccgggt ttgtccgtca tgagcgtgaa
     3361 atgcataggc aacggccttc tcgagctcaa cctgttcttc aggcttgaga taggaagcgg
     3421 tacggaaaag caaggtgcgt gcttcggcag ttaaatggtc gtaaggtgcg gtgggttgag
     3481 ggacaggcat ttcagacggc tttcggaaca tattttattt ttcgtttcaa accgtcggac
     3541 tgcacggcgg cagaatgtgc cgacgtgcgt ttccggcaga atttatttat tgcgcgtcaa
     3601 cagttccgta ccgatatgcc cggcggcgat ttcccttaag gcggtaacgg tcggtttgtt
     3661 attgcggaca tcgtccacaa gcggcgtatt gccattttca agctggcggg cccgacgggc
     3721 cgctaccaat gtcaggtcaa aatggttgga aatttttccg gtacagtctt cggtggtaat
     3781 acgtgccata ttatttgctt tctttcaaaa atatttaaaa taggaaactg ggtattttcg
     3841 cggtttttta ggaattttcc aacaaatctg caataaatcc cagttgccgc gaccttttca
     3901 gacggcaggc attcacaata tggcgcaaat cctcctccgc ccgcgccaag tcatcattga
     3961 ccacgacaaa atcgaacaat acggactgtt cgatttcatg ccttgccttc gacagcctcc
     4021 tttggataac ttcccgactg tccgtcccgc gtccgttcag acgtgcagca agcacatcga
     4081 aagacggcgg caggataaag atgccgacgg cttccggcag cgcgttgcga acctgcgccg
     4141 cgccctgaac gtcgatttcc aaaattacgt catagcctgc cgccgccaac gcattcacgc
     4201 cctccgcgct tgtgccgtaa tagttgccga acacgtctgc gtattccaaa aaagcttcct
     4261 gcgcgataag cgactcaaac tcttctttag aaacaaaatg ataatgtacg ccgtttactt
     4321 cgccttcacg cggcggacgc gtcgtgtgcg atacggaaac gcgcaaaccg ttatggtttg
     4381 ccaacagccg cgacaccagc gtggttttgc ccgtgccgga agcggccgaa atgataaaga
     4441 tgttgccttt tcgataagcg gacatatttt ttacctgtat attttccagc cgattgtatc
     4501 acaacggaca ctcggtttcc tatttgccga tgcccatatt ttgccgctat tgttttgatt
     4561 gatttggcaa gcggcaggct gacggctaca atatggcgtt aaaaacatca aacttggaac
     4621 acgcaatgct ggttcatccc gaagctatga gtgtcggcgc gcttgccgac aaaatccgca
     4681 aaatcgaaaa ctggccgcaa aaaggcatct tattccacga catcacgccc gtcctgcaaa
     4741 gcgcggaata cttccgactt ttggttgatt tattggttta ccgctatatg gatcagaaaa
     4801 tcgacatcgt tgccggtttg gacgcgcgcg gcttcattat cggcgcggca ctcgcctacc
     4861 atctcaacgt cggttttgtc cccatccgca aaaaaggcaa gctgcctttt gaaaccgtat
     4921 cgcaaagcta cgcgctcgaa tacggggaag ctgcggtgga aatccacacc gatgccgtca
     4981 aacccggttc gcgcgtgctg ctggtcgatg atttggttgc cacgggcggc acaatgcttg
     5041 ccgggctgga actgatccgc aaactcggcg gagaaattgt cgaagctgcc gctattttgg
     5101 aatttaccga ccttcaaggc ggcaagaata tccgtgcaag cggcgcgccc ttatttaccc
     5161 tgcttcaaaa cgaaggctgt atgaagggct gaaaaccgac cctgccgtct gaaaccggca
     5221 gggttgttat tatgcgttca aatcacgccc aaatcttgca agcccctcaa cacgccgtct
     5281 tcatcaacgc tggggcaaac atatttcgcc gcttctttcg ccgcctgttc cccgttgccc
     5341 attgccacgc cgaacccgac ttcagacagc atttccacat cgttcaaacc atcgccgaac
     5401 gccatcacgt ccgccatttc caaacccaat gcttcaacca cgcttctgat gccgtctgtt
     5461 ttcgacgcac ccgcaggcag cagatcgacc gcttcctcat gccagcgcac cgttttcaag
     5521 ccttcccgtt ccacaatatc cgaccaaagc ggcatttcgt tttcctccgc aaacaccagc
     5581 atctgataca ccggtttgct tgaaaaataa tccttatcgg caaaaaaatc gctggcgata
     5641 tgcttcaagg cgcggcacac gcattccgac agtgcggaca ccgcaatccc ctctccgccg
     5701 acaaacgcat aatccatgcc caagccatcc aaatgcgcgc aaaccctgcc catcaaaccg
     5761 gcatccatcg gtacttcgtg cacagttttt ccgtgcagca gcgcaaactg tccgtttatc
     5821 gttaccacgg catccatacc cgtttccgcc atcatgtccc tgaccttttc gggaatcgtc
     5881 gccaaagacc gccccgttgc caacgccgtc aatatacctt tgccgcgcaa agccgccacc
     5941 gccgttttca cggaaggacg caaggtatcc gtatatttgc ggtacagcgt atcgtcaata
     6001 tcgaaaaaca cgattttggg attcatcaca ttctctctcg cattcaaatt gccgcattgt
     6061 atcccaagca ggcaaatact tgataaatcc ttataaattt cccggcaaaa ttgaccgcga
     6121 acacgaaaag gcggataatc cgcccatcct caaacccttt tcagacggca tttgcagcaa
     6181 tgccgtctga aacattttta caaagcacac aaatcatgtt tcaacacaca ggacgacaca
     6241 taaagcgtcg ccctatatgt tgccctgatt cggaaagggt tacacccctc ccaaataaag
     6301 tctgattcta ccgccctaaa gggcggggtt tcaaccgaaa aggaaacacg atgaaagcac
     6361 ccgaactctt attgcccgcc ggcggattgg aaagaatgcg cgccgcctac gattacggcg
     6421 cagatgccgt ttacgccggc agcccgcgtt actccctgcg cgcccgcaac aacgaatttg
     6481 ccaaactcaa cgtccttgag caaggcatta aagaagcgca cgagcgcaac aaaaaattct
     6541 ttttgaccgt caacaccctg ccgcacaact ccaaactcaa aacctttgtt tccgatatgg
     6601 aacccttgat tgccatgaaa cccgacgcgc tgattatggc ggatccgggt ttgatcatga
     6661 ccgtgcgcga aaaatggccg gaaatgccga tccacctgtc cgtacaagcc aacaccacca
     6721 actactgggg cgtgaaattc tggcagaata tcggcgtcga acgcatcatc ctgtcgcgcg
     6781 aattgagtat ggaagaaatc gccgaaatcc gccaacaatg ccccgacatc gaactcgaag
     6841 tcttcattca cggcgcattg tgcatcgcct actccggccg ttgcctactc tccggctact
     6901 tcaaccaccg cgaccccaac caaggcacct gcaccaactc ctgccgttgg gactacaaag
     6961 tccacaacgc tacggaaagc gatgcgggcg atgcccggct tctgcaaggt ttcaactttg
     7021 aaaaagccca agaagaagcc aaccaaaact ttgaaggcat caacggtcaa aaacgccatc
     7081 cctacgccga caaggttttc ctgattgaag aatccaaccg tccgggcgag atgatgccga
     7141 ttatggaaga cgaacacggc acctacatca tgaactccaa agaccttcgt ggcattgaag
     7201 tggttgagaa actcgccaaa atcggcgtgg acagcctcaa agtcgaaggc cgcaccaagt
     7261 cgctctatta tgtcgcacgc gtcgcccaat cctaccgcaa agcgattgac gatgccgtcg
     7321 caggccgtcc gtttgattac agcctgttga gcgaactcga aggccttgcc aaccgcggct
     7381 acaccagcgg cttcctcgaa cgccaccaca ctcaggatta tcaaaactac ctgaccggcc
     7441 attccaccgc caaacaaagc caatacgtcg gacacgttac cgaaatcgac aaaaacggct
     7501 gggcgaccat cgaagttaaa aaccgctttg ccgtcggcga ttcgctcgaa atcatccacc
     7561 cgaacggcaa ccaaaccatc aaattggaac aaatgacccg caaaggccaa cctgtcgatg
     7621 tcgcacccgg caacggcatc caggtcaaaa tccccaatat gcggggcaaa gaaaaagccc
     7681 tcatcgcacg cgtgttgaac ccctgagcca caatgccgtc cgaaccccgt tttcagacgg
     7741 cattttgttg aatcttacgg tacaatggca atgatttccc acagcaaaca aggacatccg
     7801 acatgaaaaa aaatcctcat actctccgcc gccgccctga tgccggcagt ctgccaatcc
     7861 ggcagcgcac ctaaaaacgc gcacacggca tccgccggca caccggccgg agaatcatgc
     7921 aaagtcatcc gggacgacac cgcaggaagc ggcaaaaaca tcatttaccg ttgcagcaac
     7981 ggtcaggcgg caataaatgc agccattgca gacggcgtat tggaatcagg gattcccgtc
     8041 agcttcggcg gcgggggcgt accggttgca aacggcagga atctggttac acggcaagca
     8101 gcaaacggcg ttggcaaatc cgactccgag gcctgcgaac acgccctaat caatgccgcc
     8161 cgcaaattcc agcagaccgc aggcaaactc ggcgggcgca gtgttaccgg cttccacagc
     8221 tacttcgaca agcagccgct gcaaggcggg caatacgact gtcagacagg ttcgttccac
     8281 gtccgcgtgg tcatgcgcgc caatgtcgtc cgttaacata tcggcaatca aaaaattagg
     8341 ctgtgtttta gtaatctgtt gatttcaatt atttgcaaag gaaaagacaa ttattttttc
     8401 ggttaggaag agacctatcc tattgaatac atttaagtta aatacgtcta tcaacactat
     8461 attatagtgg attaacaaaa atcaggacaa ggcgacgaag
//
LOCUS       DAXIFD010000087         8346 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.087, whole genome shotgun sequence.
ACCESSION   DAXIFD010000087 DAXIFD010000000
VERSION     DAXIFD010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8346
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.087"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..571
                     /gene="rsmA"
                     /locus_tag="ACFOCN_001339"
     CDS             <1..571
                     /gene="rsmA"
                     /locus_tag="ACFOCN_001339"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HFC6970479.1"
                     /translation="KTLPFADKLVIHEGDVLQFDFNGIAGKKKIVGNLPYNISTPLLF
                     KLAEVADDVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFD
                     PAPKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNNLKELAGDDDLQA
                     VGINPQDRAEHIAPEKYVALSNYLAGKAV"
     gene            744..1472
                     /locus_tag="ACFOCN_001340"
     CDS             744..1472
                     /locus_tag="ACFOCN_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6970480.1"
                     /translation="MIKFKNVHKHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLI
                     RTVNQLESIESGEIWVDGVNVADPKTDLNKIREEVGFVFQSFNLYPHLTVLENITLAP
                     MKVKGQNAEQAEKKAMELLERVGLAHKKDAFPSQLSGGQQQRVAIARGLAMEPRVMLF
                     DEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHEMGFAREVADRVIFVDKGQILEDE
                     TPEAFFTNPKHERAKQFLQQVMTH"
     gene            1545..1904
                     /locus_tag="ACFOCN_001341"
     CDS             1545..1904
                     /locus_tag="ACFOCN_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970481.1"
                     /translation="MYFVDRTAVVLKPTARFLEWLKSTDENMPDLTIEQLRANCSVFL
                     VPQFDEPEAVVSYFDERYRQIFEAELAGWDINKDKWPQDMGLKAFWEFFDIEIHDMVL
                     DMEEAELNITPVFDNMM"
     gene            1909..2349
                     /locus_tag="ACFOCN_001342"
     CDS             1909..2349
                     /locus_tag="ACFOCN_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgfX"
                     /protein_id="HFC6970482.1"
                     /translation="MRAFQTALRPSRILNILTVSLHSASLAVCLTWFYGRMMWFGLAA
                     LVASYAYSLRITNLKHRHAITAITIDRDGQAEIVSGKDKTAATLAGSSMVTPYALFLQ
                     WDTGGKTVSQCIIPDMTDKESYRRLKVWVLWRQPKKTAETDTPS"
     gene            2381..3655
                     /gene="folC"
                     /locus_tag="ACFOCN_001343"
     CDS             2381..3655
                     /gene="folC"
                     /locus_tag="ACFOCN_001343"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HFC6970483.1"
                     /translation="MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLTPQCPVVV
                     VAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNERIAVNAEPVSDDTIIASFER
                     IEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAVNAFDGDCAVVTSV
                     DLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVAHAEAIGAKLLMVQRDF
                     EFHALENIQWNYRFHPQHSDDPTRNRNALPFPALRGAYQLSNAACTLTVLECLNDKLP
                     VDIGAIKRGLLLVENPGRFQVLPGRPLTVLDVGHNPHAARALRRSLINLAFAQKRTAV
                     FSMLSDKDIDGVLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHEHGIENIQTFAAVR
                     EAYRAAASKAGENDRIVVFGSFHTVADVMSVL"
     gene            3668..4666
                     /gene="ftsN"
                     /locus_tag="ACFOCN_001344"
     CDS             3668..4666
                     /gene="ftsN"
                     /locus_tag="ACFOCN_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6970484.1"
                     /translation="MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSS
                     GPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDLAGEDKPSAADSEISEPENVGAP
                     LVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
                     KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKA
                     DKAESKKTAEKDRSDGKKHETAQKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSL
                     QRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE"
     gene            4659..5156
                     /locus_tag="ACFOCN_001345"
     CDS             4659..5156
                     /locus_tag="ACFOCN_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HFC6970485.1"
                     /translation="MNNLPVADLLVFAIIAACIVLSAMRGVIAEAGSMAAWVVSFFFA
                     KLFAAPFADLAFASFQPRLFALALSFISLFVIACLIQKMLRSLLTGAVSAVGLGFANR
                     ILGGVFGALKGILIITLLVMLASKTDLPDTEEWRQSYTLPFFVSLSEAVLNHSGGTAE
                     TPEDD"
     gene            5153..5323
                     /locus_tag="ACFOCN_001346"
     CDS             5153..5323
                     /locus_tag="ACFOCN_001346"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970486.1"
                     /translation="MIALLAFQTAFSFMPSEMFFPFLSHITDYSGLNLNQYGVASPCR
                     TICTVCGFVALS"
     gene            5468..7012
                     /gene="purF"
                     /locus_tag="ACFOCN_001347"
     CDS             5468..7012
                     /gene="purF"
                     /locus_tag="ACFOCN_001347"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HFC6970487.1"
                     /translation="MCGVLGLVSHEPVNQLLYDGLQMLQHRGQDAAGIVTAEGGTFHM
                     HKGKGMVREVFRTRNMRDLTGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHN
                     GNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRREVSKNADPHRLNADNIFN
                     AVAEVHRLVRGAYGVVAMIAGYGMLAFRDPYGIRPLVLGSQTDSEGRKSYAVASESVA
                     FNALTYDLERDIRPGEAVFVGFDGTMIARQCSDRAKLSPCLFEYVYFARPDSVIDGVS
                     VYQSRLDMGVSLAEKIKRELPVDGIDVVMPIPDTSRPSAMELAVHLDKPYREGLIKNR
                     YIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAG
                     ARKVYIASAAPEVRYPNVYGIDMPTREELIANERSAAEIAAEIGANGIVFQNLSDLEA
                     VVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISIS
                     DAGDEE"
     gene            7112..7603
                     /gene="greB"
                     /locus_tag="ACFOCN_001348"
     CDS             7112..7603
                     /gene="greB"
                     /locus_tag="ACFOCN_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HFC6970488.1"
                     /translation="MSTETKNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGD
                     RSENGDYLYGKRRMREIDRRIRFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDG
                     REQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI
                     KID"
     gene            7662..8288
                     /locus_tag="ACFOCN_001349"
     CDS             7662..8288
                     /locus_tag="ACFOCN_001349"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HFC6970489.1"
                     /translation="MRKIRTKICGITTPEDASAAVAAGADAVGLVFFQGSSRAVDIAR
                     AKKITAALPPFVSVVALFVNESAQNIRRILAEVPIHIIQFHGDEDDTFCRQFDRPYIK
                     AIRVQTASDIRNAADRFPDAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGG
                     LTPENVGEAVRITGAEAVDVSGGVEASKGKKDPAKVAAFIATANRLSR"
BASE COUNT         2136 a         2415 c         2148 g         1647 t
ORIGIN      
        1 gaaaacgctg ccgtttgcgg ataaactggt gattcacgaa ggcgatgtat tgcagtttga
       61 tttcaacggc atcgcaggca aaaagaaaat cgtcggcaac ctcccgtaca acatttccac
      121 accgcttttg ttcaagctgg cggaggtggc ggacgatgtc gtcgatatgc actttatgct
      181 gcaaaaagaa gtggtcgagc gtatggttgc cgcgccgaaa agcaacgact acggccgctt
      241 gggcgtgatg ctgcaatatt ttttcgatat ggaaatgctg attgacgtac cgcccgaatc
      301 gttcgaccct gcgccgaaag tggattccgc cgtcgtccgt atgattccgg tgaaacaccg
      361 catcggcaag gcggacgatt tcgagcattt cgccaaactg gtgaaactcg ccttccacca
      421 acgccgcaaa accatacgca acaacctgaa agagcttgca ggcgacgatg atttgcaggc
      481 tgtcggcatc aatccgcaag accgtgccga acacatcgcg ccggaaaaat acgtagcgtt
      541 gagcaattat ctggcgggca aggccgtctg aaaagggagt aagccgatga agaaatacct
      601 gcttttaccc ctgatactgc cgcttgcagc ctgcctgacc aatccgaacg accgtttttt
      661 tgacggcaga cgctacacgc ttcatcatat ggagctcccg taacgacaac ctgcaacggc
      721 aaatgccgtc tgaaagaaaa gacatgatca aattcaaaaa cgtacacaaa catttcaaag
      781 acctgcacgt catcaacggc gtgaacttgg aaatcaaaaa aggcgaagtg gtcgtcgtct
      841 gcgggccttc gggcagcggc aaatccacac tcatccgcac cgtcaaccag cttgaaagca
      901 tcgaaagcgg cgagatttgg gtggacggtg tcaacgttgc cgacccaaaa accgatttga
      961 acaaaatccg cgaagaagtc ggctttgtgt ttcaaagttt caacctctac ccgcacctga
     1021 ccgtgttgga aaacattacc ctcgcaccga tgaaggttaa ggggcaaaat gcggaacagg
     1081 cggagaaaaa ggcaatggag cttttggaac gcgtcggact ggcacacaaa aaagacgcct
     1141 tcccttccca actttccggc ggccagcagc aacgcgtggc gattgcacgc ggtttggcga
     1201 tggaaccgcg cgtaatgttg tttgacgaac cgacctccgc actcgacccc gaaatggtcg
     1261 gcgaagtgtt gaaagtgatg aaagacttgg cagaaagcgg catgaccatg atgtgcgtaa
     1321 cccacgaaat ggggtttgcc cgcgaagttg ccgaccgcgt gattttcgtc gataaagggc
     1381 aaatcctcga agacgaaacg ccggaagcgt tttttaccaa cccgaaacac gaacgcgcca
     1441 agcagttcct gcaacaggtc atgacccatt gatgctatgc cgtctgaaaa ccgaacgttc
     1501 agacagcata tcccgacacc gcaagatgat tgagaaagaa aaccatgtat tttgttgacc
     1561 gcaccgccgt cgtcctcaag ccgaccgcgc gctttttgga atggctcaaa agcaccgacg
     1621 aaaatatgcc cgacctgacc atagagcagc ttcgtgccaa ctgttccgtc ttcctcgttc
     1681 cgcagttcga cgaaccggaa gccgtcgttt cctacttcga cgaacgctac cgccagattt
     1741 tcgaggcgga gctggcaggt tgggacatca ataaggataa atggccgcaa gatatggggc
     1801 tgaaggcgtt ttgggaattt ttcgacatcg aaatccacga tatggtgttg gacatggaag
     1861 aagcggaatt gaacattacc cccgtgttcg acaacatgat gtaaggctgt gcgcgccttt
     1921 cagacggcat tgaggccgtc ccgcatcctg aacatcctga ccgtatcgct ccactcggct
     1981 tcccttgccg tctgcctgac ctggttttac ggccggatga tgtggttcgg tttggcggct
     2041 ttggtggcaa gttacgcata ctcgctcagg ataacgaatc tgaaacaccg ccatgccata
     2101 accgccatta ccatagaccg cgacggacag gcggaaatcg tatccggcaa agacaaaaca
     2161 gcggcaacac ttgcgggcag cagtatggtt acgccttatg ccttattctt acaatgggac
     2221 accggcggca aaaccgtcag ccaatgcatc atacccgaca tgacggacaa agaatcctac
     2281 cggcggctga aagtctgggt gctttggcgg cagccgaaaa aaaccgccga aaccgataca
     2341 ccaagctgat ttcagacggc atttgaacac ggaacactca atgaaaacac tgcaagactg
     2401 gctctcccat ttggaaaccg cccacagcgg tggcttgatc gatatgggct tggaacgcgt
     2461 aggcgaagtg aaaaaacgga tgaagctcac gccgcaatgc cccgtcgtcg ttgtcgcggg
     2521 aacaaacggc aaaggttcgg tctgcgccta cctgacacag atttacaaac aggcaggctt
     2581 taaagtcggt acgctgacca gcccgcattt attgcgttac aacgaacgca tcgccgtcaa
     2641 cgccgaaccc gtttcggacg atacgattat tgcctctttc gagcgcatcg aagcggcgcg
     2701 cggcgaaata tcgctgactt attttgaatt caatgccttg gcggccgtcg acatcttcat
     2761 gcgcgaacag gttgacgtga tgatattgga agtcggcttg ggcggacgct tggacgcggt
     2821 caacgcattt gacggcgatt gcgcggtggt taccagcgtg gatttggacc atcaggcgtt
     2881 tttgggcgat acggtcgagc aggtcggctt tgaaaaagca ggcgtgttcc gcagcggcaa
     2941 acccgccatc tgcggtcaaa accccgcgcc cgcatcattg gtcgcacacg ccgaagccat
     3001 aggcgcgaaa ctgctgatgg tgcagcgcga tttcgagttt cacgcgctgg aaaacatcca
     3061 atggaactac cgcttccatc cgcaacattc agacgacccc acgcgcaacc gcaatgccct
     3121 gcccttcccc gcattgcgtg gcgcatacca gctttccaac gccgcctgca cgttgaccgt
     3181 attggaatgc ttgaacgaca aattgcctgt ggacatcggc gccatcaaac gcggattgct
     3241 gctggttgaa aatcccggcc gcttccaagt cctgcccggc cgtccgctga ccgttttgga
     3301 tgtcggacac aatccccacg ctgcccgcgc cctgcgccgc agcctgatta atttggcgtt
     3361 tgcgcaaaaa cgcaccgccg tattcagtat gctgtccgac aaagacatag acggcgtgtt
     3421 ggaaatcgtt aaagaccagt ttgacgagtg gtatatcgca ccgttggatg taccgcgcgg
     3481 catgacgctc gagagcctgc aaaacaaact gcacgaacac ggcatcgaaa acatacagac
     3541 attcgccgcc gtccgcgaag cataccgggc ggcagcctca aaagcgggcg agaacgacag
     3601 aatcgtcgtt ttcggctcat ttcataccgt tgccgatgtc atgtcggtac tttaaaagga
     3661 aacttctatg tccgaaaaca aacaaaacga agtcctgagc ggttacgaac aactcaaacg
     3721 gcgcaaccgc cgccgcctcg taacggcaag ttgcctggtt gccgcctcct gcatcctgct
     3781 ggcagccgcc ctcagttccg gccctgccga acagactgcc ggcgaaacaa acggcgtaga
     3841 aaacaaagcg gcaggtgcgg cacaaacccc tgccttgaaa tccgccgccg acaaaccgca
     3901 ggacttggca ggcgaagaca agccttctgc cgccgacagc gaaatcagcg agcctgaaaa
     3961 cgtaggcgcg ccgctggtgc tgattaacga ccgcctcgaa gacagcaaca tcaaaggttt
     4021 ggaagcatcc gagaaactgc aacaggcaga aaccgccaaa accgcaccga agcaggcaaa
     4081 acaacgcgct gccgaaaaag tgccggcaac tgccgacagt acggatacgg tagcggttga
     4141 aaaaccgaaa cgcactgccg aaacaaaacc gcaaaaagcg gaacgcactg ccaaagccaa
     4201 gcccaaagcc aaagaaacca aaaccgccga aaaagttgcc gacaaaccga aaactgccgc
     4261 cgaaaaaacc aaaccggata cggcaaaatc cgacagcgcg gtaaaagaaa cgaaaaaagc
     4321 cgacaaggct gaaagcaaaa aaacagccga aaaagaccgt tcggacggca aaaaacacga
     4381 aacggcacaa aaaaccgaca aagcggacaa gaccaaaacc gccgagaagg aaaaatccgg
     4441 taaaaaagcc gccattcagg caggttatgc cgaaaaagaa cgcgccttaa gcctccagcg
     4501 caaaatgaaa gcggcgggta tcgattcgac catcaccgaa attatgaccg acaacggcaa
     4561 agtttaccgc gtcaaatcaa gcaactataa aaacgcaagg gatgccgaac gcgatttgaa
     4621 caaattgcgc gtacacggta tcgccggtca ggtaacgaat gaataacctc cccgttgccg
     4681 acctcctcgt cttcgccatc atcgccgcct gcatcgtgct atccgcgatg cgcggcgtga
     4741 ttgcggaggc aggttcgatg gcggcatggg tggtttcctt cttttttgcc aaactctttg
     4801 ccgcaccctt cgccgacctc gcctttgcct cgttccaacc ccgcctgttt gcattggctc
     4861 tgtcgttcat ttccctgttc gtcattgcct gtctgatcca gaaaatgctc cgttcgctgc
     4921 tgaccggcgc agtttcggcg gtcggtttgg gctttgccaa ccgcattttg ggcggcgtat
     4981 tcggtgcatt gaaaggcatt ttgattatta ccctgctggt catgctcgct tcaaaaaccg
     5041 acctgcccga taccgaagaa tggcggcaat cttacacact gccgtttttc gtatcgcttt
     5101 ccgaagccgt gttgaaccat agcggcggca cggcggaaac tccggaagac gattgattgc
     5161 cctgctggcg tttcagacgg cattctcttt tatgccgtct gaaatgtttt ttcctttcct
     5221 cagccatatc acagattata gtggattaaa tttaaaccag tacggcgttg cctcgccttg
     5281 ccgtactatt tgtactgtct gcggcttcgt cgccttgtcc tgatttttgt taatccacta
     5341 taaatcttat tctccataaa cccacctatc tgtccttcgc tcaaatattg tcaacaattc
     5401 aggcaaaaaa ccaccgtttg ctttataatt ccgttttacc cttaaacctc gaatcggaga
     5461 agacgatatg tgcggcgtat taggtttggt cagtcatgaa cccgtgaacc agcttctgta
     5521 cgacggtttg cagatgttgc agcacagggg acaggatgcg gcgggcattg taacggccga
     5581 aggcggtacc ttccatatgc acaaaggcaa agggatggtg cgcgaagtgt tccgcacgcg
     5641 caatatgcgt gatttgaccg gcaacgccgg catcgcccac gtccgttatc ccacggcggg
     5701 caacgccggc agcagcgcgg aggcgcagcc tttctacgtc agctcgccgt tcggcatcgt
     5761 tttggcgcac aacggcaacc tcaccaacac tgccgaactt tatgaaaacg tgtgcaacaa
     5821 acacctacgc cacgtcaaca ccagctccga ttccgaagtc ttgctcaacg tattcgcgca
     5881 cgaattgcgc cgcgaagtct ctaaaaacgc cgacccgcac cggctcaatg ccgacaatat
     5941 tttcaacgcc gttgccgaag tccaccgcct ggtgcgcggc gcatacggcg tggttgccat
     6001 gattgcgggc tacggtatgc ttgccttccg cgacccttac ggcatccgcc cgctggtatt
     6061 gggttcgcaa accgacagcg aaggcagaaa atcctatgcc gtcgcctccg aatccgtcgc
     6121 cttcaacgcg cttacctacg atttggaacg cgacatccgg ccgggcgaag cggtatttgt
     6181 cggctttgac ggcacaatga ttgcccgcca atgcagcgac cgtgccaaac tcagcccctg
     6241 cctttttgaa tatgtttatt ttgcccgccc cgactctgtg attgacggcg tatccgttta
     6301 ccaatcgcgc ttggatatgg gcgtgtcgct ggcggaaaaa atcaaacgcg agctgcccgt
     6361 ggacggcatc gacgttgtga tgcccatccc cgacaccagc cgccccagcg cgatggagct
     6421 tgccgtccat ctcgacaaac cctaccgcga gggtttgatt aaaaaccgct atatcggccg
     6481 cacctttatt atgcccggac aggcgacgcg caaaaaatcc gtgcgccaaa aactcagccc
     6541 gatggaaacc gaatttgcag gcaaaagcgt gttgctggtg gacgactcca tcgtgcgcgg
     6601 gacgaccagc cgcgaaatcg tcgaaatggt acgcgcggcg ggcgcgcgca aagtctatat
     6661 cgcctccgcc gcgcccgaag tgcgctatcc caatgtgtac ggcattgata tgcccacgcg
     6721 cgaagagttg attgccaacg agcgcagcgc ggcggaaatc gccgccgaaa tcggcgcaaa
     6781 cggcatcgtg ttccaaaatt tgagcgattt ggaagccgtc gtcaaagcac tcaatccgaa
     6841 aatcgaatcc ttcgattcgt cctgtttcaa cggcatttat cagaccggcg acatcgatga
     6901 tgcctacctc gaccgcctgt ctgccgagaa atccggctgc ggcggtctga aaatccaccc
     6961 gagcaggatg gaacacagca tcagcatcag cgatgcgggc gacgaagaat aaggcttccc
     7021 aaaccgcgat gccgtctgaa atccgaacgc cgggttttca gacggcattt cccatatcgg
     7081 catcacattt cccgtttcat ccgcacacaa tatgagtacc gaaaccaaaa actacattac
     7141 gcccgccgga tggcaggcat tgaaagacga gctttatcaa ctggtcaaca aagaacgccc
     7201 cgaaatcgtc caaatcgtca actgggcggc aggcaacggc gaccgcagcg aaaacggcga
     7261 ctatctttac ggcaaacgcc gtatgcgcga aatcgaccgc cgcatccgtt tcctgaccaa
     7321 gcgtttggag tccgccgtcg tcgtcgatcc cgaattgcgc gaagcgaccg accaagtatt
     7381 tttcggcgcg accgtcggcc tgttgcgcgg cgacgggcgc gagcaaaccg tcaaaatcgt
     7441 cggcatcgat gaaatcgata ccgcgcaaaa caaaatttct tggatttcgc cgttggcgcg
     7501 ttgcctgatt aaagcgcgcg aaggcgacga agtggttttg aacacgccgg aagggcgtga
     7561 ggaaattgaa atcctttctg tcgaatacat caaaatcgac tgatcgggaa tgccgtctga
     7621 aacggtgcaa acgcatcgtt tcccaaataa aggaataccg aatgaggaaa atccgcacca
     7681 aaatctgcgg catcaccaca ccggaagacg catcggccgc cgtagcggca ggtgcagatg
     7741 ccgtcgggct ggtctttttc caaggcagca gccgggccgt cgatattgcc cgcgccaaaa
     7801 aaatcaccgc cgcactgccg ccgtttgtca gcgttgtcgc ccttttcgtc aacgaaagcg
     7861 cgcaaaacat ccgccgcatc cttgccgaag tgccgataca catcatccaa ttccacggcg
     7921 acgaagacga cacattctgc cgccagttcg accgccccta tatcaaggcc attcgtgttc
     7981 agacggcatc agacatccga aacgccgccg accgcttccc cgacgctcag gcactgctgt
     8041 tcgatgccta ccacccttcg gaatacggcg gcaccggaca ccgcttcgac tggacgctgc
     8101 tggcggaata ttcgggcaaa ccgtgggtgc ttgccggcgg gctgacccct gaaaacgtcg
     8161 gcgaagccgt ccgcatcacc ggagcggaag cggtcgatgt atccggcggc gtggaagcgt
     8221 ctaaaggcaa aaaagaccca gccaaagtcg ccgcctttat cgcaaccgcc aaccgcctat
     8281 cccgttaaag caacaaaaat tgccgccgga atgacttata gtggattaac aaaaaccagt
     8341 acggcg
//
LOCUS       DAXIFD010000088         8338 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.088, whole genome shotgun sequence.
ACCESSION   DAXIFD010000088 DAXIFD010000000
VERSION     DAXIFD010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8338
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.088"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(204..1283)
                     /gene="apbC"
                     /locus_tag="ACFOCN_001350"
     CDS             complement(204..1283)
                     /gene="apbC"
                     /locus_tag="ACFOCN_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HFC6970490.1"
                     /translation="MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHF
                     GFPVAHIASETADRIQEILMPLTGDTHIHLSIDTEIGTHKVQPGVTTIKGVKNIIAVA
                     SGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIP
                     VESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGD
                     IQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICSNCG
                     HSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIARIYTDA
                     AFQIALSIADKGKDFSSRFPKIVVE"
     gene            1494..1569
                     /locus_tag="ACFOCN_001351"
     tRNA            1494..1569
                     /locus_tag="ACFOCN_001351"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1527..1529,aa:Lys,seq:ttt)
     gene            1648..2157
                     /locus_tag="ACFOCN_001352"
     CDS             1648..2157
                     /locus_tag="ACFOCN_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HFC6970491.1"
                     /translation="MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLT
                     LLSGQRLTLGQFSRDRTVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSSA
                     EVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRA
                     RIFQADVFG"
     gene            2500..2940
                     /gene="nadR"
                     /locus_tag="ACFOCN_001353"
     CDS             2500..2940
                     /gene="nadR"
                     /locus_tag="ACFOCN_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family adhesin repressor NadR"
                     /protein_id="HFC6970492.1"
                     /translation="MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRL
                     LAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEK
                     LYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS"
     gene            3055..3555
                     /gene="hpaC"
                     /locus_tag="ACFOCN_001354"
     CDS             3055..3555
                     /gene="hpaC"
                     /locus_tag="ACFOCN_001354"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042537 - benzene-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HFC6970493.1"
                     /translation="MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAP
                     VTDEPPTVMLCINRSARIIPILSENGSLCINMLADEHQDVAEHFAGLTNLSPEERFAY
                     HIWHYGKTGQPEIEGALAHLHGHIVGQHEIGTHFVFYVRLDEIKNCVGKRPALLYFRR
                     QFRSLD"
     gene            3573..4268
                     /gene="murU"
                     /locus_tag="ACFOCN_001355"
     CDS             3573..4268
                     /gene="murU"
                     /locus_tag="ACFOCN_001355"
                     /EC_number="2.7.7.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate alpha-1-phosphate
                     uridylyltransferase MurU"
                     /protein_id="HFC6970494.1"
                     /translation="MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQA
                     GFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPF
                     LVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLVENPPHNPDGDFSLLPDGSVRPEVN
                     GGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVC
                     RLKEAQALAGAWK"
     gene            complement(4499..4930)
                     /locus_tag="ACFOCN_001356"
     CDS             complement(4499..4930)
                     /locus_tag="ACFOCN_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6970495.1"
                     /translation="MSSNAWLFWALASAGFASLTAVFAKMGLQGIDSDFATFIRTLVI
                     LAALVLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPID
                     KFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR"
     gene            5105..6781
                     /locus_tag="ACFOCN_001357"
     CDS             5105..6781
                     /locus_tag="ACFOCN_001357"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HFC6970496.1"
                     /translation="MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINP
                     AEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPV
                     FGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPK
                     RVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKE
                     RLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANI
                     AHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRA
                     LKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELA
                     MIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKI
                     RAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGF
                     RITVRGITVSSGAGFIVALCGNMMKMPGLPKVPAAEKIDVDAEGVIHGLF"
     gene            6895..7986
                     /gene="ychF"
                     /locus_tag="ACFOCN_001358"
     CDS             6895..7986
                     /gene="ychF"
                     /locus_tag="ACFOCN_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HFC6970497.1"
                     /translation="MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIV
                     EVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVN
                     VVRCFDDDNIVHVAGRVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQK
                     LVDLCKKLLPHLDEGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPH
                     LERLKELAAKENAPVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDL
                     LGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEA
                     KAKEAGKMRVEGKEYVVQDGDVMHFLFNV"
     gene            8024..>8338
                     /locus_tag="ACFOCN_001359"
     CDS             8024..>8338
                     /locus_tag="ACFOCN_001359"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970498.1"
                     /translation="MPSEVGFGGFRRFHTAGMRLHQNKIPPAFPICPPRFLQNKPPAP
                     LLQKAVRHSEYPEPRYKMTFQTAFAPPRFEYSGLTLNQDKATKPQTVQIVRQGEATPY
                     WFK"
BASE COUNT         1879 a         2123 c         2407 g         1929 t
ORIGIN      
        1 atgacggcgg agcggtttct gttttttccg ataaatgccg caatctcaaa tcccgtcatt
       61 cccacgaacc tacattccgt cattcccacg aaagtgggaa tccggaacgt aaaatctcaa
      121 aaaaaccgtt ttatccggca agtttgcccg ccggcaggcg cggggcttgg gacggcattg
      181 ctgttgcggt ttcggacgcg gctttattcg acgacgattt tggggaagcg gctgctgaag
      241 tctttgcctt tgtcggcaat gctcagggcg atttggaatg cggcatcggt gtagattcgg
      301 gcgatggcgg ggtgttcgtc gaacagttgc gccggtgtgc cgccgtccat ggcttcgcgc
      361 acgggcaggc ttaggggaag ctgtccgagc agggggacgt tgaggcgggc cgccaaatct
      421 ttgccgccgt ccgtgccgaa cagtgcttcg ctatgcccgc agttggagca gatgtggacg
      481 gacatgtttt ccaatacgcc taaaatggga atgttgacct tgcggaacat atccacagcc
      541 ttgcgcgcgt ctatcagggc gatgtcctgc ggcgtggtta cgatgaccga tccggttacg
      601 gggatgcgtt gggacagcgt gagttggatg tcgcccgtgc cggggggcag gtcgatgaaa
      661 agataatcca cttcgtccca ctcgctttga aacatcagtt gctgcaaggc ttggctgacc
      721 atcggcccgc gccagacgac ggcttggtcg gtatcgacga gaaagccgat agacatgacc
      781 tgtatgccgt ctgaagattc gacgggaatg agtttttggt ttttctgatc gggtttgcgg
      841 tcgtccacac ccaacatggt cggttggctc gggccgtaaa ggtcggcatc gagcacgccg
      901 acgcgcgcgc ccatccgcgc cattgcggcg gcaaggttgg cggtggttgt tgatttgccc
      961 acgccgcctt tgccggaggc gacggcaatg atgtttttca cacctttgat ggtggtaacg
     1021 ccgggctgga ctttgtgtgt gccgatttcg gtgtctatgg acagatggat gtgtgtgtcg
     1081 cctgtcagcg gcatcaggat ttcctgtatg cggtcggctg tttctgaggc aatgtgcgcg
     1141 acggggaagc cgaaatgcag ggcgatatgg atgccgtctg aacgctgttc gaccgaacgg
     1201 acggcctttt cgccgccgag cgtgcgtgcc gtattcggaa cggcgacggt gtcgaggagg
     1261 gtgcggatgt tttgtatgtt cataatgtgt gtttctgtgt gcagtttggg aaacgggcgg
     1321 aaagtgtaca ttgatttcgg gcggtttgct tttccttgtg cgaactttta cacggtatgc
     1381 ggcggattgt gaaaatccgt tgtcaaaata tcccgtgcaa acagtggtct gcaattaagc
     1441 ctgtaaaatt tgcttgacga ggtaggatgg tgctgtataa tgcacggctt atcgggtcgt
     1501 tagctcagcc ggtagagcag cggactttta atccgttggt cgagcgttcg aatcgctcac
     1561 gacccaccag ataaccggaa gccaagtttt gagacttggc tttttgtttg cctgccggtt
     1621 gcgcgggcgt accgtttgag agagcgtatg aaaaagaaac tgctttcggg catcaaattt
     1681 gccgttcaga cggcattggt gtttttattg gtgtcgctgt ttttggattg ggtacgcaag
     1741 cccgacgaac ctgccggcgc ggcagggcgg cctttgaccc tgctgtcggg gcagcggctg
     1801 actttgggac agtttagccg ggataggacg gtgctggtgt atttttgggg aagctggtgc
     1861 ggcgtgtgcc gttatcagtc gccgataatc gatgatttgg cggcggacgg cgtgccggtc
     1921 gtcggcgtgg cggtacgttc cggcagttcg gcggaagtgg cggcgtatat ggcaaaacgc
     1981 ggcttgggct ttccgactgt caacgatgag gacgggggtt tggcaaggtc ttggcggatt
     2041 gtcgcaacgc ctgccgtcgt tttggtcaaa aatgggaaaa tggttcacta tacgacggga
     2101 atcagcagtt attggggctt gcgcgcacga atttttcagg cggatgtttt cggttaactt
     2161 ttgtttttgt taaactttac gctatgtaga gaatcaaacg gcatatacct tgctcgtctg
     2221 atgcggcggc ttttgttttt tctggaagaa agttctttcg acagtaaatg taatactttg
     2281 ttgagattgt agggaaaata gactaagata taactattaa aatattttta gataggatta
     2341 tcggaattaa agtcttttat acccagtcgt ccgatgcggt ttatagcgta ttgttgctat
     2401 atgttcgttt tgttatataa cggttgcatc aaaatttacg cccacaggct ttcccgacgg
     2461 tttgaaagtt tgattttcga taacttggag acttgaacaa tgcctaccca atcaaaacat
     2521 gcgtctatca atatcagtct gatacaggca agggaagccc tgatgaccca attcaggcct
     2581 attctgaatc aggcgaatat taccgatcag caatggcgga ttatccgtct tttggcggaa
     2641 aacggcacgc tggactttca agatttggcg aatcaggcgt gtattctgcg ccccagcctg
     2701 accggtatcc tgacccgcct tgaaaaagcg ggtttggttg tccgcctgaa accttccaac
     2761 gaccaacgac gtgtttttct gaagctgact gccgagggcg agaagctgta tgaggaaatc
     2821 ggcgaagaag tggacgagcg ttacgacgct atcgaggaag tgctgggccg cgagaaaatg
     2881 ctgctgctta aagacctgtt ggcagaactt gccaaaatcg aggatgcgtt gaactcgtaa
     2941 tacgccgtaa cgcgcggaaa cgtccgaccg acggcttttt gaatcagaac tgctgcacat
     3001 ggggggtgcc ttgtgtgcag cattcttata taggggacag tttaaagggg aaaaatggcg
     3061 gatttgcaga aaacttttca aacttcgttc cgtgatgcga tggcatcttg cgcggcaggc
     3121 gttcatgtca tcacgacaga cggtgcggca gggcgttacg gcattacaat gacggcggtt
     3181 gcgccggtta ccgacgagcc gccgaccgtg atgctgtgca tcaaccggag tgcgcgaatc
     3241 attccgatcc tgtcggaaaa cggcagcctc tgcatcaata tgctggcgga cgaacatcag
     3301 gatgttgccg aacattttgc cggattgacc aatctttcac ccgaagaacg ttttgcctat
     3361 catatttggc attacggtaa aaccggacaa cctgaaatag aaggcgcgtt ggcgcatctg
     3421 cacgggcata ttgtcggcca acatgaaatc ggcacacatt ttgtgtttta cgtcaggctc
     3481 gacgaaatta aaaattgcgt gggcaaacgt cccgcgctgc tttatttcag acggcagttt
     3541 agatctttag actgatattc ggacagatat atatgaaagc gatgatactg gcggcaggac
     3601 gcggcgagcg tatgcgtcct ttgaccgata ccactccgaa gccgctgctc gatgtggcgg
     3661 gtaagcctct aatcggttgg cacctatgcc gtctgaagca ggcggggttt accgaaatcg
     3721 tcatcaacca cgcttggctg ggtcggcaga tagaagatgc tttgggcgac ggctcggctt
     3781 atggcgtgaa catcgcctat tcgcccgaac ccgcaggcgg cttggaaacg gcaggcggca
     3841 tcgcgcaggc attgccgctg ttgggtgggc agccgttttt ggtggtcaac ggcgacgtgc
     3901 tgaccgacat cgattttacc gccgcgtttc aggcggcatc gtccctgccg gaacatattt
     3961 ccgcccatct gtggctggtg gaaaatccgc cgcacaaccc cgacggcgat ttttccctgc
     4021 tgcccgacgg cagcgtgcgg ccggaagtaa atggcggcaa cggattgaca ttcagcggcg
     4081 tgggtattta ccgtcctgaa atgtttgacg gaatcgaagc gggcagtgtg gcgaaactcg
     4141 cgcccgtatt gcgtggcgaa atgcggcaaa accgcgtgag cggtcagaag catacgggct
     4201 tgtggctgga tgtcggcacg gtatgccgtc tgaaagaggc tcaagccctt gcaggggctt
     4261 ggaagtgaaa taaaacggtg gcttgccgag ccggctgccg aacggttccg accggatgtc
     4321 cagcatattt tcgtggaggc gtgaaaatag ggcgttcggg gctttccgtc caacaaatgc
     4381 catctgaagc gcggcggttt gccgtcggcg cggtgtcgga ttttattggg taactttgtt
     4441 cagaccgccg cccgtcagat tgtcaaaacc cggtttcagg cggtatggcg gattcggttt
     4501 aacgtttcaa cgccagcacc aacacgcccg ccgttaccag ccccaagcct atccattcct
     4561 gcgtgttcgg gcgttcgtcc aagaaaacca ccgccatcag cgcgaccaag accaggctga
     4621 atttgtcgat gggggcgact tgcgaggcgt tgcccagttg cagggctttg aagtaggcga
     4681 gccaggatgc gccggtagca aggccggata ggataaggaa tgtccagttg cgccccgtaa
     4741 agccgttcac accctgccat ttgccggtgt aggtcaaaaa caataccaaa gcggcgagga
     4801 tcaccaaggt gcggataaag gtggcgaaat cggaatcgat gccctgtaaa cccattttgg
     4861 cgaaaacggc ggtcaatgag gcgaagcctg ccgatgccaa tgcccaaaac agccatgcgt
     4921 tgctgctcat gttttctcct tggattgtga acaatatgaa cggtattttt gttgcagcgt
     4981 caaaaatttc actgcgggtt tggtgcggat aacgttataa tatgcctgat attattttca
     5041 atccacctgt ttgtcgcctg atgctttcag acggcatgtc cctcctcatt tctaaaggaa
     5101 aatcatgagc ttcaaaaccg atgccgaaat cgcccaatcc tccaccatgc gcccgattgg
     5161 cgaaattgcc gccaagctgg gtctgaatgc cgacaacatt gagccttacg gtcattacaa
     5221 ggcgaaaatc aatcctgccg aagcgttcaa actgccgcaa aaacagggca ggctgatttt
     5281 ggttaccgcc attaatccga ctccggcggg cgaaggcaaa accaccgtaa ccatcggttt
     5341 ggcggacgcg ttgcgccaca tcggcaaaga tgccgtgatt gccctgcgcg aaccttctct
     5401 ggggccggtg ttcggcgtga aaggcggcgc ggcaggcggc ggctatgccc aagttttgcc
     5461 gatggaagac atcaacctgc acttcaccgg agattttcac gccatcggtg cggcaaataa
     5521 tctgcttgcc gcgatgctcg acaaccatat ctatcagggc aacgagttgg acatcgaccc
     5581 caaacgcgtg ctgtggcggc gcgtggtcga tatgaacgac cgccagttgc gcaacatcat
     5641 cgatggcatg ggtaaacccg ttgacggtgt gatgcgcccc gacggttttg atatcaccgt
     5701 tgcctccgaa gtgatggcgg tattctgcct tgccaaagac atcagcgatt tgaaagagcg
     5761 tttgggcaac atcctcgtcg cctacgccaa agacggcagc cccgtttacg ccaaagattt
     5821 gaaggcacac ggcgcgatgg cggtcctgct caaagatgcg attaagccca atttggtgca
     5881 aaccatcgaa ggcacgcccg ccttcgtaca cggcggcccg ttcgccaaca tcgcccacgg
     5941 ctgcaactcc gtaaccgcaa cccgtctggc gaaacacctt gccgattacg ccgtaaccga
     6001 agcaggcttc ggcgcggatt tgggcgcgga aaaattctgc gacatcaaat gccgccttgc
     6061 cggtttgaaa cctgatgcgg cggtcgtcgt ggcgactgtc cgcgctttga aatacaacgg
     6121 cggcgtggaa cgtgccaacc tcggtgaaga aaacctcgaa gccttggcaa aaggtttgcc
     6181 caacctgctg aaacacattt ccaacctgaa aaacgtattc ggactgcccg tcgtcgttgc
     6241 gctcaaccgc ttcgtgtccg actccgatgc cgagttggcg atgattgaaa aagcctgtgc
     6301 cgaacacggc gttgaagttt ccttgaccga agtgtggggc aaaggcggcg tgggcggtgc
     6361 agacttggcg cgcaaagtcg tcaacgccat cgaaaaccaa ccgaacaact tcaatttttc
     6421 ctacgatgtt gagctgagta ttaaagacaa aatccgtgcg attgcccaaa aagtgtacgg
     6481 cgcggaagat gttgatttca gcgcggaagc gtctgccgaa atcgcctcgc tggaaaaact
     6541 gggcttggac aaaatgccga tttgcatggc gaaaacccaa tattctttga gcgacaacgc
     6601 caaactcttg ggctgccctg aaggcttccg cattaccgtg cgcggcatta ccgtttcttc
     6661 cggtgctggt ttcatcgttg cgttgtgcgg caatatgatg aaaatgccgg gtctgcccaa
     6721 agttcccgcc gccgagaaaa tcgacgtgga cgcagaaggc gtgattcacg gcttgttctg
     6781 aacggttttt gaaaccagat gccgtctgaa gccgtttcag acggcatttt ttcggaacgc
     6841 gggcggcggt atgctataat ccgccgttaa atttctctat tttcaggaaa aaacatgagt
     6901 ttgaaatgcg gcatcgtcgg tttgcccaac gtcggcaaat ccaccctttt taacgcgctg
     6961 acccaatcgg gtatcgaagc ggcaaactat cctttctgta ccatcgaacc caacgtcggc
     7021 atcgtcgaag tccccgatcc gcgtatggcc gaattggcaa aaatcgtcaa tccgcaaaaa
     7081 atgcagcctg ccatcgtcga atttgtcgat attgccggtt tggttgcagg cgcgagcaaa
     7141 ggcgagggct tgggcaacca gttccttgcc aacatccgcg aaaccgatgc gattgtgaat
     7201 gtcgtgcgct gctttgacga cgacaacatc gtccacgttg caggccgcgt cgatccgatt
     7261 gccgacatcg aaaccatcgg cacagagttg gcacttgccg acctggcaag tgtggaaaaa
     7321 gccatcgtcc gcgaagaaaa acgcgcccgt tcaggcgaca aagacgcgca aaagctggtc
     7381 gatttgtgca aaaaactgct gccgcatctg gacgaaggca aacccgtgcg ttccttcggt
     7441 ttggacgcgg aagaacgcgc gatgctcaaa ccgctgttcc tgctgaccgc caaaccggcg
     7501 atgtatgtgg gcaacgtcgc cgaagacggt tttgaaaaca atccgcacct cgaacgcctg
     7561 aaagaattgg cggcaaaaga aaacgccccc gtcgtcgccg tttgcgccgc aatggaaagc
     7621 gaaatcgccg aattggaaga cgacgaaaaa gccgagttcc tcgccgaaat gggcttggaa
     7681 gaaccgggcc tgaaccgcct gatccgtgcc ggctacgacc ttttggggct gcaaacctac
     7741 tttaccgccg gcgtgaaaga agtccgcgct tggacgatac acaaaggcga caccgccccg
     7801 caagccgccg gcgtgattca caccgacttt gagcgcggct tcatccgcgc ccaagtcatt
     7861 tcttacgacg actttgtctc gctcggcggc gaagccaaag ccaaagaagc cggcaaaatg
     7921 cgtgtggaag gcaaggaata cgtcgtgcag gatggggatg tgatgcactt tttgtttaac
     7981 gtgtaaccca aatgcggcag gttttcagac ggctttgccg aaaatgccgt ctgaagtcgg
     8041 ttttggtggc tttcggcgtt tccataccgc cggaatgcgg ctgcatcaaa ataaaatccc
     8101 gcccgcattt ccgatttgcc ctccccgatt cctgcaaaac aaaccgcctg ccccgctgtt
     8161 gcaaaaagcc gtccggcatt ccgaatatcc cgagccccga tacaaaatga cctttcagac
     8221 ggcatttgcg ccgccgcgtt tcgagtatag tggattaact ttaaatcagg acaaggcgac
     8281 gaaaccgcag acagtacaga tagtacggca aggcgaggca acgccgtact ggtttaaa
//
LOCUS       DAXIFD010000089         8309 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.089, whole genome shotgun sequence.
ACCESSION   DAXIFD010000089 DAXIFD010000000
VERSION     DAXIFD010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8309
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.089"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(148..1080)
                     /gene="cysK"
                     /locus_tag="ACFOCN_001360"
     CDS             complement(148..1080)
                     /gene="cysK"
                     /locus_tag="ACFOCN_001360"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HFC6970499.1"
                     /translation="MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVK
                     DRIAEAMIEGAEKAGKINKNTVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKER
                     KMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTA
                     EEIWRDTDGKVDVFVAGVGTGGTITGVGEVLKKYKPEVKVVAVEPEASPVLSGGEKGP
                     HPIQGIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSAL
                     QLAKQPENEGKLIVVLLPSYGERYLSTPLFADLA"
     gene            complement(1274..1879)
                     /locus_tag="ACFOCN_001361"
     CDS             complement(1274..1879)
                     /locus_tag="ACFOCN_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970500.1"
                     /translation="MILLHLDFLSALLYAAVFLFLIFRAGMLQWFWASIMLWLGISVL
                     GAKLMPGIWGMTRAAPLFIPHFYLTLGSIFFFIGHWNRKTDGNGWQADPEHPLLGLFA
                     VSNVSMTLAFVGICALVHYCFSGTVQVFVFAALLKLYALKPVYWFVLQFVLMAVAYVH
                     RCGIDRQPPSTFGGSQLRLGGLTAALMQVSVLVLLLSEIGR"
     gene            complement(1876..2727)
                     /gene="dapF"
                     /locus_tag="ACFOCN_001362"
     CDS             complement(1876..2727)
                     /gene="dapF"
                     /locus_tag="ACFOCN_001362"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HFC6970501.1"
                     /translation="MNTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVG
                     FDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVET
                     ANGVIFPKLSDNGMVTVNMGKPRFMPSEIPFVPELGEGDDACIYGVHLESGIQPVSCV
                     NMGNPHAVIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGV
                     GETQACGTGACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVF
                     EGELAYS"
     gene            2864..3160
                     /locus_tag="ACFOCN_001363"
     CDS             2864..3160
                     /locus_tag="ACFOCN_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970502.1"
                     /translation="MFRILLLLFPCAILAACTRNIPANPAVSNCAHLQNRTILYFDAH
                     GKPADGAVKGGFYKIIEIQGANRILIQDFNSTGNALGGSYVPDCRKSSLFPKNI"
     gene            3174..3842
                     /locus_tag="ACFOCN_001364"
     CDS             3174..3842
                     /locus_tag="ACFOCN_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6970503.1"
                     /translation="MNHDITFLTLFLLGFFGGTHCIGMCGGLSSAFALQLPPHINRFW
                     LILLLNTGRVSSYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGI
                     SSLAAKIEKIGKPIWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALG
                     SGSAATGGLYMLAFALGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKLA
                     VLWL"
     gene            complement(3914..6037)
                     /gene="pnp"
                     /locus_tag="ACFOCN_001365"
     CDS             complement(3914..6037)
                     /gene="pnp"
                     /locus_tag="ACFOCN_001365"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HFC6970504.1"
                     /translation="MMFNKYVKTFQYGNQTVTLETGEIARQAAAAVKVSMGDTVVFVA
                     VTTNKEVKEGQDFFPLAVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRP
                     LFPEGFYHDIQIVAMVVSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYING
                     VYVLNPTKAELAKSQLDLVVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAIN
                     AINEFADEVNPEVWDWKAPETNEELVAKVRRIAGETIKEAFKIRQKQARSAKLDEAWN
                     AVKEALITEETDTLAANEIKGIFKRLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTG
                     VLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEV
                     GRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCL
                     SLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQ
                     MDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGPQELSAHAPRLFTMKINQDKI
                     REVIGKGGETIRSITAETGTEINIAEDGTITIAATTQEAGDAAKKRIEQITAEVEVGK
                     VYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKALEV
                     DDRGRVRLSIKALLDAPAREENAAE"
     gene            complement(6271..7134)
                     /locus_tag="ACFOCN_001366"
     CDS             complement(6271..7134)
                     /locus_tag="ACFOCN_001366"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HFC6970505.1"
                     /translation="MSEIGLVKIYFGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPI
                     PSKGEILTQISNFWFKKLVHIMPNHFTGQTVYDVLPENEAKALEKRAVVAKKLTPVKV
                     EAIVRGYLAGSGWKDYQKTGSVCGIQLPEGMQEAQQLPEVIFTPSTKAAVGDHDENIS
                     FEECERIIGKELAAEVRAKAIQLYTEAAEYAKSRGIIICDTKFEFGLDTNGTLTLMDE
                     VLTPDSSRFWPADQYKVGTNPPSFDKQFVRDWLEQSGWNKKAPAPKVPANVIQKTVEK
                     YQEALTLLTQD"
     gene            7333..8196
                     /gene="rfbD"
                     /locus_tag="ACFOCN_001367"
     CDS             7333..8196
                     /gene="rfbD"
                     /locus_tag="ACFOCN_001367"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HFC6970506.1"
                     /translation="MRILLTGSKSQLARCLRDRLPEDWETIATDSASLDITDADAVCN
                     MVKSFQPDAIVNTAAYTAVDKAEGNAAAAFAVNASAVYNLALAAHRAHARFIHISTDY
                     IFDGKGKRPYQESDFTNPSNVYGQSKTAGELLALSANPDSLILRTSWLFSEYGDNFVR
                     TMLNLARERSPLSAVHNQIGCPTYAGDLAAAIIRLLQQTSPVRGIYHYAGGKSVSWYE
                     FAQHIFQAASQQQTSFPVPELTAVSDKEYPTAAPRPAYSILDCRKIENDFSIKPSDWQ
                     KALAQVVSKLL"
BASE COUNT         1984 a         2398 c         1924 g         2003 t
ORIGIN      
        1 tatttccctc aagcgatgtg gcggcaccaa cacctgatta aaacacaacc ggcgttttcg
       61 gcatatacgc aaaaacgcat tttccggcac ggcgttacac cgataccgaa aaatgcgtct
      121 gaatgtttcg acaatccgat taaagcatta tgccaaatct gcaaaaagtg gcgtagagag
      181 atagcgttcg ccataagaag gcagcagcac gactatcagc ttgccttcgt tttcaggctg
      241 tttggcaagc tgcaacgcac tccaaaccgc cgcaccggaa gaaataccca ccaaaatgcc
      301 ttctttttcc gctattgcgc gggcggtttc aaaagccgct tcgttcgaca ctttggtaat
      361 gctgtcgtaa attttggtat tcaaaacggt cggaataaag cctgcgccga tgccttgaat
      421 cgggtgcggg cctttttcgc cgccgctcaa tacgggtgaa gcttcaggct cgacggcaac
      481 cactttaact tcgggtttgt attttttcaa cacttcgccc acgccggtaa tcgtaccgcc
      541 cgtgccgacg ccggcaacga agacatcgac tttgccgtcc gtatcccgcc aaatttcctc
      601 ggcggttgtt ttgcggtgga cttcggggtt tgcctcattg tcgaactggc gcggcataaa
      661 ataagtgtcg ggatgcgcgt ccaccaagga tttcgctttg gcaatcgcgc ccgccatacc
      721 ttcggcggca ggggtcagaa tcagctccgc accaaacgcg cgcaacagca ttttgcgctc
      781 cttactcatg ctttccggca tggtaatcgc cagcttgtag ccgcgtgcgg cacataccat
      841 tgccaaaccg acacccgtat tgccgctggt tgcttcgaca atgacggtgt ttttgttgat
      901 tttgcccgct ttttcggcac cctcgatcat tgcttcggca atgcggtctt tgacgctgct
      961 gcctggattg aaaaattcca gtttcacggc aacctccgcc ttcaaacctt cggtcagacg
     1021 gttcagtttg accaaaggcg tgttgccgat tagttcggtg atgctgtttg caattttcat
     1081 cttctgctcc tgaataataa ggtttcgaca gtaaggcgca atccccatag gcatcctgtc
     1141 cgattgcagg ggatttgcgc cgaaacataa acaaatttcg gatatggctt tatcctaaac
     1201 ctatgccgcc taaaaaacca atatccaaaa tttctttctt tataactttt tgttccgata
     1261 cggccgcacc gtattatctt ccaatttctg aaagcagcag caccagtacc gagacctgca
     1321 tcaacgctgc cgtcaacccg ccgagtcgca gctgcgagcc gccgaacgtt gacggcggct
     1381 gccggtctat accgcagcgg tggacatagg caaccgccat cagcacaaac tgcaacacga
     1441 accaataaac cggcttcagc gcataaagtt tgagcagtgc cgcaaacaca aacacttgaa
     1501 ccgttcccga aaagcaataa tgcaccaacg cacatattcc gacaaaagca agcgtcatcg
     1561 atacattact gacggcaaac agcccgagca gcggatgttc ggggtctgcc tgccatccgt
     1621 ttccatccgt tttccggttc caatgcccga tgaaaaaaaa tatgctgccc aaagtcaggt
     1681 aaaaatgggg gatgaacaag ggcgcggcgc gggtcattcc ccatatgccg ggcatcagct
     1741 ttgcccccaa aaccgatatg cccagccaca gcataatact cgcccaaaac cattgcaaca
     1801 ttcctgcgcg gaatatcaga aacagaaaaa ccgccgcata cagtaaggca gacaaaaaat
     1861 ccaaatgcag caaaatcatg aatacgccaa ctcgccttca aacaccgctt ccgcagggcc
     1921 ggtcatcatc acatcgccgc cgcaggccca ttcgatatat aaagtcccgc ccggcaaaat
     1981 cacctctacc gttttccctt catccaacaa ccccagacgg atacccgcca ccacagccgc
     2041 acacgcgccc gtaccgcacg cttgggtttc gcccacgccg cgctcgaaca cgcgcaaacg
     2101 aatcgcggtt cggctgacaa tctgcataaa gccgacgttg acgcgttcgg gaaactgcct
     2161 gtgcggttcg ataagcgaac cggtttcgcg caccggcgcg cattctacgt catcgaccac
     2221 aatcaccgca tgggggttgc ccatattgac gcagctgaca ggctgaatgc cggattcgag
     2281 atgcaccccg taaatacagg catcatcccc ctcgcccaat tcggggacaa acggtatttc
     2341 agacggcata aacctcggtt tgcccatatt gaccgtaacc atgccgttat cggacaattt
     2401 cggaaaaata acgccatttg ccgtttcaac acaaatttct ttcttatcgg tcaaaccctt
     2461 gtctgcaaca aaacgggcaa aacaacgcgc tccgttgccg cattgcccga cctcgctgcc
     2521 gtcggcattg aaaatacggt aacggaaatc cacgccttcg gtttccgaac gcccgaccac
     2581 caaaagctgg tcgaagccca cgcctcggaa gcggtccgcc catgccgcaa tcggcgcgtc
     2641 ctcgggggta aaatcctgac tgaccgcgtc aatcaccata aaatcgttgc ccaaaccgtg
     2701 cattttggta aatttcaacg tgttcatatt gttccgaaat cccgtatcgt ctgttgcttc
     2761 cgaatccgaa atcccccgca ccgaagggaa atgcttccat ctcccgccgc ctgaggatta
     2821 aaatcagcca ttatactgtt tgttacccct tacaagaaac accatgttcc gcatattact
     2881 gttgcttttc ccttgtgcaa tccttgccgc ctgcacccga aacataccgg caaacccggc
     2941 cgtttcaaat tgcgcgcatc ttcaaaaccg caccatcctg tattttgacg cacacggcaa
     3001 acccgccgac ggcgcagtaa agggcggatt ttacaaaatt atcgaaatac agggtgcaaa
     3061 ccgcatcctt attcaagact ttaacagcac gggcaatgcc ctcggcggat cctatgtgcc
     3121 ggactgccgc aaatcatccc ttttcccgaa aaatatttga cttcaaactg cctatgaacc
     3181 acgacatcac tttcctcacc ctgttcctac tcggtttctt cggcggaacg cactgcatcg
     3241 gtatgtgcgg cggattaagc agcgcgtttg cgctccaact ccccccgcat atcaaccgct
     3301 tttggctgat cctgctgctt aacacaggac gggtaagcag ctatacggca atcggcctga
     3361 tactcggatt aatcggacag gtcggcgttt cactcgacca aacccgcgtc ctgcagaata
     3421 ttttatacac agccgccaac ctcctgctgc tctttttagg cttatacttg agcggtattt
     3481 cttccttggc ggcaaaaatc gagaaaatcg gcaaaccgat atggcggaac ctgaacccga
     3541 tactcaaccg gctgttaccc ataaaatcca tacccgcctg ccttgcggtc ggaatattat
     3601 ggggctggct gccgtgcgga ctggtttaca gcgcgtcgct ttacgcgctg ggaagcggta
     3661 gtgcggcaac gggcgggtta tatatgcttg cctttgcact gggtacgctg cccaatcttt
     3721 tggcaatcgg cattttttcc ctgcaactga aaaaaatcat gcaaaaccga tatatccgcc
     3781 tgtgtacggg attatccgta tcattatggg cattatggaa acttgccgtc ctgtggctgt
     3841 aagccccatt cattcccgat acccgtaaaa ataccgtctg aaacctgttc agacggcact
     3901 ttcaccctaa gcgttactcg gcggcatttt cctcacgggc aggcgcgtcc agcagggctt
     3961 tgatggacag acggacacgg cctctgtcgt ccacttccaa tgctttcacg ttcaccacct
     4021 gaccgacttg caggtagtcg ccgacattgc gtacgcgctc gtgggcgatt tggctgatgt
     4081 gtaccaaacc gtctttgccc ggcatcacgc tgacaatcgc gccgacattg ttgtcgagga
     4141 ttttcaccac agtgccttcg tacactttgc ccacttccac ttcggcagta atctgctcga
     4201 tgcgtttttt cgccgcatcg ccggcttctt gagtggttgc ggcaatggta atcgtaccgt
     4261 cttcggcaat attgatttcc gtaccggttt cagcggtaat cgaacggatg gtttcaccgc
     4321 ccttaccgat aacttcgcgg attttgtctt ggttgatttt catcgtgaac aagcgtggcg
     4381 cgtgtgcgga cagctcttgc gggcccgcaa cggcggcttt catctgatcc aagatgtgca
     4441 gacgcgcttc tttggcctgt gccaaagcga tttgcataat ttctttggta atgccttgga
     4501 ttttgatgtc catttgcagc gcggtaacgc cttcggtcgt accggccact ttaaagtcca
     4561 tatcgcccaa gtggtcttcg tcgcccaaaa tgtcggtcag gacggcaaat ttgttgcctt
     4621 ccagaatcag acccatcgcg ataccggcaa cgtgtgcttt caaaggcacg ccggcagaca
     4681 gcaggctcag gcagccgccg cagacggaag ccatagagga agagccgttg gattcggtaa
     4741 tttcggagac cacgcgcatg gtgtagctga aatcttcagg tttcggcaat acggccaaca
     4801 atgcacgttt agccaaacgg ccgtgaccga tttcacggcg tttcggtgcg cccatgcggc
     4861 ccacttcgcc ggtagagtac ggcggaaagt tgtagtgcag cataaagcgg tcggtatatt
     4921 cgccggacaa cgcgtcgatg atttgttcgt cgcgcgaagt acccaaagtc gctacggcaa
     4981 gggcttgggt ttcgccacgg gtaaacagtg cggaaccgtg cgtgcgcggc aatacgccgg
     5041 tttggatgtt cagcggacgg acggtgcggg tgtcgcggcc gtcgatgcgc ggttgtccgt
     5101 ccaaaatttg gctgcggacg acatcggctt ccaagcgttt gaaaatacct ttgatttcgt
     5161 tggctgccag cgtgtcggtt tcttcggtaa tcaaggcttc ttttaccgca ttccaagcct
     5221 cgtccaattt ggcggaacgc gcttgttttt gacggatttt gaacgcttct ttaatggttt
     5281 cgccggcaat cctgcgtact ttggcaacca gttcttcatt ggtttcaggt gctttccaat
     5341 cccaaacttc cggattcact tcgtcggcaa attcattgat tgcattgatg gcaacctgca
     5401 tttgatcgtg gccgtaaacc accgcgccca acatcacgtc ttcgggcagg attttggctt
     5461 cggattccac catcaacacg gctttggaag taccggcgac caccaagtcc aattgtgatt
     5521 tcgccaactc ggctttagtc gggttcaaaa cgtacacgcc gtttatataa cccacgcgcg
     5581 ccgcgccaat cgggccggcg aacggtacgc cgctcaacac cagcgcggcg gacgcgccca
     5641 acattgcagg aatgtcggaa tcgatttcgg gatcgacgga cacaaccatc gctacgattt
     5701 ggatgtcgtg gtagaaacct tcggggaaca gcggacgaat cgggcggtcg atcagacggc
     5761 tggtcaggat ttctttttcg ctttgtttgc cttcgcgttt gaagaagccg ccggggattt
     5821 tgcctgcggc ataagtgcgt tccaaataat cgacggccaa cgggaagaag tcctgacctt
     5881 ctttgacctc tttgttggtg gtaacggcaa caaaaacaac agtgtcgccc atcgatactt
     5941 taacggcagc ggcagcttgg cgggcaattt cgccggtttc caaagtaacg gtttgattac
     6001 cgtattggaa ggtcttaacg tatttattga acatcattgt tcctttcaaa ataccgcact
     6061 gctaaaacac taataatgca cactaaaatc cgaatgtgca tagttagggt ttcagaccgt
     6121 gcggcaggtt ataaacaagc tttcagacgg cactccggac gctgaaaaca gcccccgatt
     6181 ataaaggcaa ccatccttaa aatccagtat tgatacaata aaaaggccgt ctgaaccata
     6241 tttctttcag acggccttca aacttaaaaa tcaatcctga gtcagcaaag tcaatgcttc
     6301 ctgatatttt tcgactgttt tttgaatcac attggcaggc actttaggcg caggggcttt
     6361 tttgttccaa ccgctttgtt ccagccagtc gcggacaaat tgtttgtcaa aagacggcgg
     6421 atttgtgccg actttatatt ggtcggcagg ccagaagcgg ctcgaatcgg gggtcaatac
     6481 ctcatccatc agcgtcagcg taccgtttgt atccaaaccg aattcaaatt tggtatcgca
     6541 aatgatgatg ccgcgcgatt tggcatattc cgccgcttct gtataaagct gaatcgcttt
     6601 ggcgcgcact tccgccgcca attcttttcc gataatgcgt tcgcattctt caaagctgat
     6661 gttttcatcg tgatcgccga ctgcggcttt ggttgagggc gtaaaaatca cttcaggcag
     6721 ttgttgcgct tcctgcatac cttcaggcag ttgaataccg caaaccgagc cggttttttg
     6781 ataatctttc caaccgctgc ctgccagata accacgcaca atcgcctcta ctttcaccgg
     6841 agtgagcttt ttagccacga cggcgcgttt ctctaaagct ttggcttcgt tttcaggcaa
     6901 aacatcgtaa accgtttgac cggtaaagtg gttgggcata atatgcacca gttttttaaa
     6961 ccaaaaattg gaaatctgcg tcagaatctc ccctttgctc ggaatcgggt cgtccaaaat
     7021 cacatcgaat gcagacaggc ggtcggaagc gaccatcagc atacgtttat cgtcgatttc
     7081 atataaatcg cgcacttttc caaaatagat ctttaccaaa ccaatctcac tcatttcgcc
     7141 ccccctgaaa atatcttgaa aataccgacc cgacacccga caggtttgaa tcacaaacca
     7201 atattctagc cgaagtcggc gcaaaacaat acccatggca caaaaaacca acccgtcaac
     7261 cgtcggcaaa gttttggcac tataataccg acagcaagtc ctacaataca cttttaccaa
     7321 aggaaatacc tcatgagaat cctattgaca ggctcgaaaa gccaactggc acgctgcctg
     7381 cgcgaccgtc ttccggaaga ctgggaaacc attgcgacgg attccgcatc cctagacatt
     7441 accgatgccg atgccgtctg caacatggtc aaaagtttcc aacccgacgc tattgtcaac
     7501 acggctgcct atactgccgt cgacaaagcg gaaggcaatg cggcagcggc atttgccgtc
     7561 aatgcttccg ccgtttacaa ccttgccttg gcagcacatc gcgcccatgc ccgattcatc
     7621 cacatctcaa ccgactatat ctttgacggt aaagggaaaa ggccctatca ggaaagcgac
     7681 tttaccaatc cttccaatgt atacggacaa tccaaaaccg caggcgagct gctcgcactg
     7741 tctgccaatc ccgacagcct tatcctgcgg acttcttggc tgtttagcga atacggggac
     7801 aactttgtcc gcacgatgct gaaccttgcg cgggaacgtt ccccgctgtc cgccgtccac
     7861 aaccaaatcg gctgcccgac ctatgccggc gatttagctg ccgccatcat ccgccttttg
     7921 cagcaaacgt cgcccgtgcg cggcatttac cactacgccg gcggcaaatc cgtatcctgg
     7981 tacgaatttg cccaacatat tttccaagcg gcatcgcaac agcagacatc cttccccgtt
     8041 cccgaattga ctgccgtttc agacaaggaa tatccgaccg ccgcccccag gcccgcatac
     8101 agcattttgg actgccgcaa aatcgaaaac gacttcagca tcaaaccgtc agactggcaa
     8161 aaagcccttg cacaggtcgt ttccaagctg ctctgatgcc gcccgcctct ccgtttccgc
     8221 cgtcaagcac cgccttggcg gttttcttat atagtggatt aacaaaaacc agtacggcgt
     8281 tgcctcgcct tgccgtacta tttgtactg
//
LOCUS       DAXIFD010000090         8273 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.090, whole genome shotgun sequence.
ACCESSION   DAXIFD010000090 DAXIFD010000000
VERSION     DAXIFD010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8273
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.090"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(59..1315)
                     /locus_tag="ACFOCN_001368"
     CDS             complement(59..1315)
                     /locus_tag="ACFOCN_001368"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HFC6970507.1"
                     /translation="MNAAQLDHTAKVLAEMLTFKQPSDAVLSAYFREHKKLGRQDRHE
                     IAETAFAALRHYQKISTALRRPHAQPRKAALAALVLGRSTNISQIKDLLDEEETEFLG
                     NLKARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKG
                     KRDKVLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALL
                     VGAKRGEIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNI
                     HPERISSEHDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQH
                     SILDAASKLVKPQGRLVYATCSILPEENELQVERFLSEHPEFEPVNCAELLQSLKIDL
                     DTGKYLRLDSAKHQTDGFFAAVLQRK"
     gene            complement(1351..2208)
                     /locus_tag="ACFOCN_001369"
     CDS             complement(1351..2208)
                     /locus_tag="ACFOCN_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HFC6970508.1"
                     /translation="MNYALDALWWKLTSQPVRDLASLLTAPPLWQSGCELGVRELLGE
                     RGFRYLLALDADPAPLTEHLTRRAPFGHRLGIYAEELLAFWFANAPHAELLAHNLTVS
                     GSDGNTQGAADFVVRLNGKPYHIELTCKYYGGGTGRLEDMRGLDPKDTLLGKAAKLTA
                     QLGLPHTSDGIRTLRQHGLPLDVKPVSIVRGIGFFPQSFHAFEPPLNPYGWRGIYIQD
                     WAEYGFERQEVRYHLLDRMAYLAPARAAETETLNETEIRRIDQGLIAVLECRPDGFWH
                     EIERIMKAV"
     gene            complement(2269..3084)
                     /locus_tag="ACFOCN_001370"
     CDS             complement(2269..3084)
                     /locus_tag="ACFOCN_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HFC6970509.1"
                     /translation="MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLT
                     IVAPNLMATPMTENPPVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD
                     TTIACALTSRRREITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACN
                     RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTGSPMTHLQQEDHAATHEQIKGMVAHME
                     SVMNDIGFFNRRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTVSHRIHKKD"
     gene            3148..3318
                     /locus_tag="ACFOCN_001371"
     CDS             3148..3318
                     /locus_tag="ACFOCN_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970510.1"
                     /translation="MPSEMFFNNVGNLTLRLKQTRVGRYFTRFGRIYPNQINSDFAAP
                     KDCASEPAVCHP"
     gene            3328..4113
                     /locus_tag="ACFOCN_001372"
     CDS             3328..4113
                     /locus_tag="ACFOCN_001372"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6970511.1"
                     /translation="MNPFLNTAFKAARRAGQMMIRAAGNLDAVKTDSKAFNDFVSDVD
                     RNSEIILVEALKEAYPHHKITCEESGSHGKAAAEYEWIIDPLDGTTNFLHGHPQYAIS
                     MALLHKGVLQEALVYAPERNDVYMASRGKGALLNDRRIRVSNRIELNRCLIGTGFPVV
                     DQSMMDKYLAILKDFLAKTAGGRREGAASLDLCAVATGRFDGFFEFNLKPWDIAAGAL
                     IVQEAGGIVTDMTGEDGWLESGDIVAANPKVLAQMLKIISAHV"
     gene            4383..6506
                     /locus_tag="ACFOCN_001373"
     CDS             4383..6506
                     /locus_tag="ACFOCN_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6970512.1"
                     /translation="MGKANAFTAPITVVNYDEQALNNTEARTLVDAVAKKDASVWQFG
                     GESNTLTGLYFRGYQLDARQFSVNGLAGMYGTQGTASVQVGSAQLIKGASTAVNGMNP
                     EGAVSGSVNIETKKAADEGNRKIGLGRFSNNRAQGTFDLGQRFGENKAFGVRANGKLR
                     HGDTPRHGYSEDNKEFAVNADYRGETLRVAFDSIYAKRKTNGGRARMQDIQNAGGRLF
                     GAPDGKTNLLPSWNWQNTAGQTNMLTFEWDAFDNAQITGGIGYNKARYYGTLISPTVC
                     LNATSTCTDMQNTNASGKVTARNYDYNTGTARLTDQYFRTLSMNLSARGEFETGPVTH
                     NWSTAFDRVIRQRKTINGSGNGNSKIEVKANENIANQLASFTADYPNSWENSANLDAN
                     IKVNSLALSDTLGFVDNKYRLTLGGRFQAVEYTNKKKSQSGDAKRFSPMLMAAWVPQP
                     DLVVYGNYMEDLEPADIKTDDSGETTMAKPRVSRQFEVGVRKNWGNFVTTLNAFQIKR
                     PGYWRGHTTTKTTKGVTTTLTYGNNSDFARYKAQGGAAGDEQGMERNRGIEFNTYANL
                     LNNTLRPTLGLMYLQSTVKEYPNSRDMLVNGVQVANPRVIAKAGLEWDTPFAKGLTLN
                     GNVSYFGKSYQDTQKQYAFPSYTLVDVGARYKTKLGKNTLTVSSSVENLFNKNYWQVQ
                     RGQYDRSFAVVGMPRTYWLKAELDF"
     gene            6630..8180
                     /locus_tag="ACFOCN_001374"
     CDS             6630..8180
                     /locus_tag="ACFOCN_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HFC6970513.1"
                     /translation="MKKPLISVAAALLGVALGTPYYLGVKAEESLTQQQKILQETGFL
                     TVESHQYERGWFTSMETTVIRLKPELLNNARKYLPDNLKTVLEQPVTLVNHITHGPFA
                     GGFGTQAHIETEFKYAPETEKVLERFFGKQAPVSLANTVYFNGSGKMEVSVPAFDYEE
                     LSGIRLHWEGLTGKTVYQKGFKSYRNSYDAPLFKIKLADKGDAAFEKAHFDSETSDGI
                     NPLALGSSNLTLEKFSLEWKEGVDYNVKLNELVNLVTDLQIGAFINPNGSIAPSKIEV
                     GKLAFSTKTGESGSFINSEGQFRFDTLVYGNEKYGPLDIHIAAEHLDASALTVLKRKF
                     AQISAKKMTEEQIRNDLIAAVKGEASGLFTNNPVLDIKTFRFTQPSGKIDVGGKIMFK
                     DMKKEDLNQLGLMLKKTEADIRMSIPQKMLEDLAVSQAGNIFSVNAEDEAEGRASLDD
                     INETLRLMVDSTVQSMAREKYLTLNGDQIDTAISLKNNQLKLNGKTLQNEPEPDFDEA
                     GMVSEPQQ"
BASE COUNT         2012 a         2023 c         2305 g         1933 t
ORIGIN      
        1 atgaaatgcc gtctgaacgc tttgaaaagg gttcagacgg cattttgttt aaacagggtt
       61 atttgcgttg caatacggcg gcgaagaagc cgtcggtttg gtgttttgcc gaatcgaggc
      121 gcaggtattt gccggtatcc aaatcgattt tcaggctttg cagaagttcg gcgcagttga
      181 cgggttcaaa ttcgggatgt tcggacagga aacgttcgac ttgcagctcg ttttcttcgg
      241 gcaggatgct gcaagtggcg taaaccaagc ggccttgcgg ttttaccagt ttggaggcag
      301 catcgaggat gctgtgttgc tgttccaaaa ggttggccac ggtctcggca gattggcggt
      361 atttgaggtc gggattgcgg cgtaaagtac ccaaaccgga gcagggcgcg tccaccaaca
      421 cacggtcggc tttgcctgcc agtcgggcga tacggctgtc gtgttcgctg ctgatgcgtt
      481 cggggtggat attggtcagt ccggcgcggg tcatacgcgg tttgaggttg gcaaggcgtt
      541 tttcggcgat gtcgaaggcg tagattctgc ctttattggc catttgcgca ccgacagcca
      601 aggttttgcc gccggcaccg gcacagaaat cgacaatgat ttcgccgcgt tttgcgccca
      661 ccaataaagc aagcagctgg ctgccttcgt cttggacttc cagtgtgccg tctaaaaaca
      721 gttcgtgttt gttaagcgcg attttgtttt tcaggcggat gccccaaggc gaataaggcg
      781 ttgcctctgc atcggcactt tcggcttgca acagcggcag cactttatcg cgtttgcctt
      841 tcaaagtgtt gacgcggatg tcgagcggcg cggcttggtt gatgctgcgt ccgaaggcga
      901 ggatttcttc ttcgttccaa tgctgttgca gttgttcgac cagccattgc ggcaattctg
      961 cggcggtatt cagaccgtct gaaaactcgg ttttgcgggc tttcaaattg ccgaggaact
     1021 ctgtttcttc ttcatcaagc aggtctttga tttggctgat gttggtgctt ctgccgagaa
     1081 ccagtgcggc gagtgcggct ttgcgtggct gcgcgtgagg acggcgcagg gcagtgctga
     1141 ttttttgata gtggcgcagc gcggcaaagg cggtttcggc gatttcgtgg cggtcttggc
     1201 ggccgagctt tttatgttcg cggaagtagg cggagaggac ggcatcggaa ggctgtttga
     1261 aagtcagcat ttcagccaaa actttggcgg tatggtcgag ttgtgcggcg ttcataatgt
     1321 aatgggttct cttaaagttg gcaaagggtt tcagacggcc ttcataatgc gttcgatttc
     1381 gtgccaaaag ccgtccggcc gacattccaa aacggcaatc aagccttggt cgatacggcg
     1441 gatttcggtt tcgttcaatg tttcggtttc ggcggcacgc gcaggtgcga ggtaggccat
     1501 gcggtcgagc agatggtagc ggacttcttg gcgttcaaac ccgtattccg cccagtcttg
     1561 aatatagatg ccgcgccagc cgtatgggtt aagcggcggc tcaaaagcat ggaaactttg
     1621 tggaaaaaat ccgatgccgc gcacgatgga aacgggtttt acgtcaagcg gcagaccgtg
     1681 ttgccgcaag gttcggatgc cgtctgaagt gtgcggcaga ccgagttggg cggtcagttt
     1741 ggcggctttt cccaacagcg tgtctttggg gtcgagtccg cgcatgtctt cgagcctgcc
     1801 cgtgccgccg ccgtaatatt tgcaggtcag ctcgatatgg tagggcttgc cgttaagcct
     1861 taccacaaaa tccgccgcgc cttgcgtatt gccgtccgaa ccggaaaccg tgaggttgtg
     1921 cgcgagcagt tcggcgtgtg gcgcgttggc aaaccaaaat gccagcagtt cttcggcgta
     1981 aatgcccaag cggtgtccga acggggcgcg tcgggtgagg tgttccgtca gcggcgcggg
     2041 atcggcatcc aatgccaaaa gatagcggaa accgcgttcc cccaatagtt cgcgcacgcc
     2101 caattcgcaa ccgctttgcc acaaaggcgg cgcagtcagc agcgaggcga ggtcgcggac
     2161 gggttggctg gtgagcttcc accataatgc gtctagggcg taattcatgc ttatccgaat
     2221 atcagtcatg ccgtctgaaa agctggaaat gttttcagac ggccttaatc agtctttttt
     2281 atggatacga tggctgacgg tattgaaaaa accgcgcagg atatcgatgt cttcggtttg
     2341 cgtgttggcg cgtccgaaca ggctctgcat acggcgcatc agacgctcgc cgttgcggcg
     2401 gttgaaaaag ccgatgtcgt tcatcacgct ttccatgtgg gcgaccatgc ctttgatttg
     2461 ctcgtgggtc gcagcgtggt cttcttgttg aagatgggtc atgggcgaac cggtttggct
     2521 gaagatttcg tagcacacga cctgcacggc ttgggcgagg ttgagcgaga aatagtcggg
     2581 attgccgttg atggtcatca gtcggttgca ggcttggact tcttcgatgc tcaagccgaa
     2641 agtctcgttg ccgaaaacca gtgccacttt ctcgcctcgg tttgcggtct gcagtaattc
     2701 ggataccaaa tcgcgcgggg tttgcagcgg cgcagtaatt tcgcggcggc ggctggtcag
     2761 ggcgcaggcg atggtggtgt cggcaagggc ttcgtccaaa gaagcggcaa tggtggcatt
     2821 ttccaaaacg tctgccgcgc cggaagcgag gatgaagctt tcttccggta atttaaacga
     2881 ttgaggatgc tccgggtcaa acacgggcgg gttttccgtc atcggcgttg ccatcagatt
     2941 tggggcgacg atggtcagtt tgtgcagacc cattgttttc atcgcgcgcg cggcagagcc
     3001 gatgttggcg ggatggctgg tgcgcgtgag gatgatgcgg atgttgtcca gataagcggg
     3061 cagggcgggt ttgagagtag tcatgttcgg ttttcggtcg gaatggaata gggtataatg
     3121 cgccgtcttt ttcgttcgga cggtcaaatg ccgtctgaaa tgttctttaa caacgtcgga
     3181 aatttaacgt tgcgcctgaa gcagacacgc gtcgggcggt attttacccg atttggcagg
     3241 atttacccca accaaataaa ctccgatttt gccgctccga aggactgcgc gtccgaaccg
     3301 gcggtatgcc acccttaagg aaatctgatg aatccgtttt tgaatacagc ctttaaagcc
     3361 gcccgccgtg ccggtcagat gatgatacgc gccgcgggca atctcgatgc cgtcaaaacc
     3421 gacagcaaag cattcaacga ttttgtttcc gatgttgacc gcaattccga aatcatcctg
     3481 gttgaggctt tgaaagaagc ctatccgcac cacaaaatca cttgcgaaga aagcggctcc
     3541 cacggtaaag ccgcagccga atacgaatgg attatcgatc cgctcgacgg cacgaccaac
     3601 ttccttcacg gccatcccca atacgccatc tctatggcac tcctgcacaa aggcgtgttg
     3661 caagaagctt tggtgtacgc ccccgaacgc aacgacgttt acatggcttc gcgcggcaaa
     3721 ggcgcgttgc tcaatgaccg ccgcatccgc gtttccaacc gcatcgaatt gaaccgctgc
     3781 ctgatcggta ccggctttcc tgttgtcgat caaagcatga tggacaagta tctggcgatt
     3841 ttgaaagatt tcttggcaaa aaccgccggc ggccgtcgtg aaggcgcggc ttctttggat
     3901 ttgtgtgctg tggcgactgg tcgttttgac ggctttttcg agttcaacct caaaccttgg
     3961 gatattgccg caggcgcatt gattgttcag gaagcgggcg gtatcgtaac cgatatgacg
     4021 ggtgaagacg gctggctgga aagcggcgat attgttgccg ccaatcccaa agtgctggcg
     4081 caaatgttaa aaatcatttc cgcacacgtt taaatttcag cccgctcccg ggaatgcggg
     4141 aaaacgggcg ggtatgccgt ctgaagtatc gcgccgatat ttcagacggc atttttactg
     4201 gcagcggggg caggaaggtg gaaacggcta aatgcccgaa actgccgaag atggaaaccc
     4261 atatctgatt aaacggagaa ccctgtacga tttgtttata gtggattaac aaaaaccagt
     4321 acggtgttgc ctcgccttag ctcaaagaga acgattctct aaggtgctga agcaccaagt
     4381 gaatgggcaa agccaacgcc tttaccgcgc cgattaccgt cgtcaactac gacgaacaag
     4441 ccctcaacaa caccgaagcg cgtactttgg tggatgccgt agcgaaaaaa gacgcttccg
     4501 tttggcagtt cggcggagaa agcaacacgc tgactggact gtatttcaga ggttatcagc
     4561 ttgatgcgcg ccaattcagc gtcaacggtt tggcaggtat gtacggcacg caaggcacgg
     4621 ccagcgtgca agtcggctcc gcacaactga ttaaaggcgc gtccaccgcc gtaaacggca
     4681 tgaaccctga aggtgcggta tccggttccg tcaatatcga aaccaaaaaa gccgccgatg
     4741 aaggcaaccg caaaatcggt ttgggccggt ttagcaacaa ccgcgcccaa ggtacgttcg
     4801 atttgggtca acgcttcggc gaaaacaaag cattcggcgt acgcgccaac ggcaaactgc
     4861 gccacggcga cactccgcgc cacggttaca gcgaagacaa caaagaattt gcggtaaatg
     4921 ccgactatcg cggcgaaaca ctgcgcgtag cgttcgattc catctacgca aaacgcaaaa
     4981 ccaacggcgg tcgcgcgcgt atgcaggaca ttcaaaacgc cggcggacgc ttgtttggcg
     5041 cgcccgatgg taaaaccaac ctgctgcctt cttggaactg gcaaaatacc gccggccaaa
     5101 ccaatatgct tacgtttgaa tgggatgcgt ttgataatgc acagattaca ggcggtatcg
     5161 gctacaacaa ggcacgctat tacggcacgc tgatttcccc gaccgtatgt ttgaatgcta
     5221 ccagcacttg taccgatatg caaaacacaa acgccagcgg caaagtaacg gcacgcaact
     5281 atgactacaa taccggtact gcgcgcctga ccgaccaata cttccgcact ttaagcatga
     5341 acctgtctgc gcgaggcgaa tttgaaaccg gcccggtaac acataactgg agtacggctt
     5401 tcgaccgcgt tatccgccag cggaaaacca taaacggcag cgggaacggc aacagcaaga
     5461 tagaagtgaa ggcaaacgaa aatattgcga atcaattggc atcgtttaca gccgactatc
     5521 ccaattcttg ggagaactct gccaacttgg atgccaatat caaagtcaac agcctggctt
     5581 tgtccgacac cttgggcttc gtggataaca aataccgcct gactttgggc ggacgtttcc
     5641 aagcggttga atacaccaat aagaaaaaat cacagagcgg cgatgccaaa cgcttcagcc
     5701 cgatgctgat ggcggcgtgg gtgccgcaac ctgatttggt tgtgtacggc aactatatgg
     5761 aagacttgga gcctgccgat atcaaaaccg atgattccgg cgaaacgaca atggcgaaac
     5821 cgcgtgtcag ccgtcagttt gaagtgggcg tgcgtaaaaa ctggggcaat ttcgtaacca
     5881 cgttaaacgc gttccaaatc aaacgcccgg gctactggcg cggtcataca actaccaaga
     5941 caacaaaagg ggtaacaaca acgctgacct atggcaacaa ttccgatttc gcccgctata
     6001 aggcgcaagg cggcgcggcc ggcgacgagc aaggtatgga acgcaatcgc ggtattgagt
     6061 tcaacaccta cgcgaacttg ctcaacaata ctttgcgtcc gactttgggt ctgatgtatc
     6121 tgcaatcgac cgtgaaagag tatccaaatt cacgcgatat gctggttaac ggcgtacaag
     6181 tcgccaatcc gcgcgtaatt gccaaagcag gtttggaatg ggatacaccg tttgccaaag
     6241 gattgacttt aaacggtaat gtttcgtatt tcggcaagtc ttaccaagac acgcaaaaac
     6301 aatacgcttt cccgtcttac actttggttg acgtaggcgc gcgctacaaa accaagctcg
     6361 gcaaaaatac gttgaccgtc agcagctcgg tggaaaacct gttcaacaaa aactactggc
     6421 aggtacagcg cggccaatac gaccgcagct tcgccgtcgt cggtatgccg cgtacttact
     6481 ggttgaaagc ggaattggat ttctgatttc tccgcatccg gaaaatgccg tccgaacagg
     6541 tttcagacgg catttctttt aaagaaatat ggcgggatat gcttaaataa tgctattcta
     6601 gcgtctttga aacctgcttg tttgaagtga tgaaaaaacc tttgatttcg gttgcggcag
     6661 cattgctcgg cgttgctttg ggtacacctt attatttggg tgtcaaagcc gaagaaagcc
     6721 tgacgcagca gcaaaaaata ttgcaggaaa cgggcttctt gaccgtcgaa tcgcaccaat
     6781 atgagcgcgg ctggtttacc tctatggaaa cgacggtcat ccgtctgaaa cccgagttgc
     6841 tgaataatgc ccgaaaatac ctgccggata acctgaaaac agtgttggaa cagccggtta
     6901 cgctggttaa ccatatcacg cacggccctt ttgccggcgg atttggcacg caggcgcaca
     6961 ttgaaaccga gttcaaatac gcgcctgaaa cggaaaaagt tttggaacgc ttttttggga
     7021 aacaagctcc ggtttccctt gccaataccg tttattttaa cggcagcggt aaaatggaag
     7081 tcagtgttcc cgccttcgat tatgaagagc tgtcgggcat caggctgcat tgggaaggat
     7141 tgacgggaaa aacggtttat caaaaaggtt tcaaaagcta ccgcaacagc tatgatgcgc
     7201 ccttgttcaa aatcaagctg gcagacaaag gcgatgccgc gtttgaaaaa gcgcatttcg
     7261 attcggaaac ttcagacggt atcaatccgc ttgctttggg cagcagcaat ctgaccttgg
     7321 aaaaattctc cctagaatgg aaagagggtg tcgattacaa cgtcaagtta aacgaactgg
     7381 tcaatcttgt taccgatttg cagattggcg cgtttatcaa tcccaacggc agcatcgcac
     7441 cttccaaaat cgaagtcggc aaactggctt tttcaaccaa gaccggggaa tcaggctcat
     7501 ttatcaacag tgaagggcag ttccgttttg acacgctggt gtacggcaat gaaaaatacg
     7561 gcccgctgga catccatatc gccgccgaac atctcgatgc ttctgcctta accgtattga
     7621 aacgtaagtt tgcacaaatt tccgccaaaa aaatgaccga ggaacaaatc cgcaatgatt
     7681 tgattgccgc cgtcaaaggc gaggcttccg gactgttcac caacaatccc gtattggaca
     7741 ttaaaacttt tcgtttcaca cagccgtcgg gaaaaatcga tgtgggtgga aaaatcatgt
     7801 ttaaagacat gaagaaggaa gatttgaacc aattgggttt gatgctgaag aaaaccgagg
     7861 cagacatcag aatgagtatt cctcaaaaaa tgttggaaga cttggcggtc agtcaggcag
     7921 gcaatatttt cagcgtcaat gccgaagatg aggcggaagg cagggcaagt cttgacgaca
     7981 tcaacgagac cttgcgcctg atggtggaca gtacggttca gagtatggca agggaaaaat
     8041 atctgacttt gaacggcgac cagattgata ctgccatttc tctgaaaaac aatcagttga
     8101 aattgaacgg taaaacgttg caaaacgaac cggagccgga ttttgatgaa gccggtatgg
     8161 tttcagagcc gcagcagtaa tgggtcaaat gccgtctgaa atgttcaggc ggcattttgt
     8221 tgtattggaa actgccgttt tcaaccattc ctttagataa gccgtgtcgg att
//
LOCUS       DAXIFD010000091         8190 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.091, whole genome shotgun sequence.
ACCESSION   DAXIFD010000091 DAXIFD010000000
VERSION     DAXIFD010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8190
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.091"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(123..347)
                     /locus_tag="ACFOCN_001375"
     CDS             complement(123..347)
                     /locus_tag="ACFOCN_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HFC6970514.1"
                     /translation="MDAVQELEHRITELEIQSALQEDVIAGLNAMVAELRQTLDLQQA
                     QLRLLYQKMQDRNPDAQEPYSLRDEIPPHY"
     gene            complement(348..1736)
                     /locus_tag="ACFOCN_001376"
     CDS             complement(348..1736)
                     /locus_tag="ACFOCN_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HFC6970515.1"
                     /translation="MNAVVVAVIVMLVLSLSRVHVVLSLTVGAFVGGAVAGMPLQNIA
                     DAAGQVSQAGIIPVFNKGLEGGAKIALSYAMLGAFAMAITHSGLPQQLAGAVVRKLNR
                     GGMPDSVRSGEGAVKWLLLSIILVMGMMSQNIIPIHIAFIPMIVPPLLLVFNRLKIDR
                     RLIACVITFGLVTTYMFLPYGFGAIFLNEILLGNIHSAAPQLDVKNINVMAAMAIPAL
                     GMLAGLLLAFVHYRKPRLYQSNNADTAGNADAANRPQPSAYRSLAAAAAIAVCFAIQL
                     MYEDSLVLGAMLGFAVFMMLGVINRDKANDVFGEGIKMMAMVGFIMIAAQGFAAVMNA
                     TGHIQPLVESSMAIFGNSKGMAALAMLVVGLLVTMGIGSSFSTLPIIAAIYVPLCVGL
                     GFSPLATVAIVGTAGALGDAGSPASDSTLGPTMGLNADGQHDHIRDSVIPTFIHYNIP
                     LLIAGWIAAMVL"
     gene            complement(1822..2643)
                     /gene="prmC"
                     /locus_tag="ACFOCN_001377"
     CDS             complement(1822..2643)
                     /gene="prmC"
                     /locus_tag="ACFOCN_001377"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6970516.1"
                     /translation="MTFDEWLGLSKLPKNEARMLLQYASEYTRVQLLTRGGEEMPDEV
                     RQRADRLAQRRLNGEPVAYLLGWREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPEN
                     GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPSLETARKNAADLGARVEFAHGSWF
                     DTDMPSEGKWDIIVSNPPYIENGDKHLSQGDLRFEPQIALTDFSDGLSCIRTLAQGAP
                     DRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMKHLK"
     gene            complement(3158..4642)
                     /gene="tldD"
                     /locus_tag="ACFOCN_001378"
     CDS             complement(3158..4642)
                     /gene="tldD"
                     /locus_tag="ACFOCN_001378"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HFC6970517.1"
                     /translation="MPYNQAPDFLCADTMHPTYSAVQARLLEANRLSPELLAKSLCII
                     GAHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCI
                     DSINRSARAVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAI
                     AKAADPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQGSA
                     GGGGRYDLAYFDENLVRQFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAV
                     GHGLEGDFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVL
                     IEDGILVGYMQDETNARLTGTQSTGNGRRESYASVPMPRMTNTFMENGSYEPEEIIAS
                     IDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVS
                     MIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRIDAGLTVGGSAI"
     regulatory      4820..4923
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4990..6213
                     /gene="cytX"
                     /locus_tag="ACFOCN_001379"
     CDS             4990..6213
                     /gene="cytX"
                     /locus_tag="ACFOCN_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003519479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HFC6970518.1"
                     /translation="MSGNASSPSSSAAIGLIWFGAAVSIAEISTGTLLAPLGWQRGLA
                     ALLLGHAVGGALFFAAAYIGALTGRSSMESVRLSFGKRGSVLFSVANMLQLAGWTAVM
                     IYAGATVSSALGKVLWDGESFVWWALANGALIVLWLVFGARKTGGLKTVSMLLMLLAV
                     LWLSAEVFSTAGSTAAQVSDGMSFGTAVELSAVMPLSWLPLAADYTRQARRPFAATLT
                     ATLAYTLTGCWMYALGLAAALFTGETDVAKILLGAGLGAAGILAVVLSTVTTTFLDAY
                     SAGVSANNISAKLSETPIAVAVAVVGTLLAVLLPVTEYENFLLLIGSVFAPMAAVLIA
                     DFFVLKRREEIEGFDFAGLVLWLAGFILYRFLLSSGWESSIGLTAPVMSAVAIATVSV
                     RLFFKKTQSLQRNPS"
     gene            6210..7310
                     /locus_tag="ACFOCN_001380"
     CDS             6210..7310
                     /locus_tag="ACFOCN_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFC6970519.1"
                     /translation="MTRIAILGGGLSGRLTALQLAEQGYQIALFDKGCRRGEHAAAYV
                     AAAMLAPAAEAVEATPEVVRLGRQSIPLWRGIRCRLNTHTMMQENGSLIVWHGQDKPL
                     SSEFVRHLKRGGVADDEIVRWRADDIAEREPQLGGRFSDGIYLPTEGQLDGRQILSAL
                     ADALDELNVPCHWEHECAPEDLQAQYDWLIDCRGYGAKTAWNASAEHGSTLRGIRGEV
                     ARVYTPEITLNRPVRLLHPRYPLYIAPKENHVFVVGATQIESESQAPASVRSGLELLS
                     ALYAVHPAFGEADILEIATGLRPTLNHHNPEIRYSLARRLIEINGLFRHGFMISPAVT
                     AAAVRLAVALVDGKDAPERDEESGLAYIRRQD"
     gene            7331..7948
                     /gene="thiE"
                     /locus_tag="ACFOCN_001381"
     CDS             7331..7948
                     /gene="thiE"
                     /locus_tag="ACFOCN_001381"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFC6970520.1"
                     /translation="MTFPPLKSPLKFYAVVPTADWVGRMVKAGADTVQLRCKTLHGDE
                     LKREIARCVAACQGSRTQLFINDHWREAIEAGAYGVHLGQEDMDTADLAAIAAAGLRL
                     GLSTHSVAELDRALSVHPSYVASGAIFPTTTKQMPTAPQGLDKLCEYVKQAGGTPVVA
                     IGGIDLNNARAVLATGVSSLAAVRAVTEAENPEAVVKAFQALWDG"
BASE COUNT         1743 a         2518 c         2215 g         1714 t
ORIGIN      
        1 tgtactgtct gcggcttcgt cgccttgtcc tgatttttgt taatccacta tatatcttag
       61 gtttgcatcg gcggaatatt caaacacagc cttttttaag gaaatccgga tacggcggcg
      121 catcaataat gcggcggaat ctcgtcgcgc agggaatacg gctcttgcgc gtcgggattc
      181 ctgtcctgca ttttttgata cagcagcctc aactgagcct gctgcaaatc cagcgtctgc
      241 cgcaattccg ccaccatcgc gttcaggccg gcgattacgt cctcctgaag cgcggattgg
      301 atttccagct ctgtgatgcg gtgttccaac tcttgaaccg cgtccattta cagcaccatc
      361 gcggcaatcc agccggcaat cagcagcggg atattgtagt ggatgaaggt cgggataacg
      421 gaatcgcgga tgtggtcgtg ttgtccgtcg gcgttcagcc ccatcgtcgg gcccaacgtg
      481 gaatcggacg caggcgaacc ggcatcgccc aacgcccccg ccgtgccgac gatggcgacg
      541 gtggcaagcg gcgaaaaacc caaaccgaca cacaaaggca cataaatcgc ggcaataatc
      601 ggcaaagtgg aaaaggacga accgatgccc atcgttacca aaagccccac caccagcatc
      661 gccaatgccg ccataccttt gctgttgccg aatatcgcca tactgctttc caccagcggc
      721 tgaatatgcc cggtcgcatt catcacggcg gcaaaaccct gcgcggcaat cataatgaag
      781 ccaaccatcg ccatcatctt gatgccttcg ccgaatacgt cgtttgcctt gtcgcggttg
      841 atgacgccca acatcataaa tacggcgaaa ccgagcatcg cgcccaacac cagcgagtct
      901 tcatacatca actggatggc aaagcatacg gcaatggcgg cggcggcggc caggctgcgg
      961 taggcggacg gctgcggacg gtttgccgca tcggcgttgc ccgccgtatc ggcattgttg
     1021 ctttggtaca ggcgcggttt gcggtaatgg acaaacgcca gcaggagtcc ggccagcatt
     1081 cccaacgcgg gaatcgccat tgccgccatt acgttgatgt ttttcacatc aagctgcggc
     1141 gcggcggaat ggatgttgcc caacaggatt tcgttcaaaa aaatcgcgcc gaagccgtaa
     1201 ggcaggaaca tataggtcgt aaccagcccg aaagtaatga cgcacgcaat caggcggcgg
     1261 tcgattttca ggcggttgaa caccaaaagc agaggcggaa caatcatcgg gataaaggca
     1321 atgtggatgg ggatgatgtt ctgactcatc atgcccatca caaggatgat ggaaagcagc
     1381 agccatttga ccgcgccctc gcccgaacgc acgctgtcgg gcataccgcc ccggttcagc
     1441 ttgcggacga ccgcgccggc aagctgctgc ggcaggccgg aatgggtaat cgccattgca
     1501 aacgcgccga gcatcgcata agaaagcgca atcttcgcac cgccttccaa acctttgttg
     1561 aacacgggga taatccccgc ctggctgacc tgtcccgccg catcggcaat gttttgcagc
     1621 ggcatacccg ccaccgcgcc gccgacaaac gcgccgaccg tcaggctcaa taccacgtgc
     1681 acgcgcgaca gcgacagcac cagcataacg attacggcaa ctacgactgc attcattgtt
     1741 tatcgctcca aacctataaa tgtttacata tcgaaacaca tcataaccca ataacggaaa
     1801 acccgccaat tttgcaaaca attatttcaa atgcttcata tacttcccca gcgtaaccct
     1861 gtccaaaccc gccaagtccg gcagggtttc cactcccgaa aaaccattct ccgccaacac
     1921 gccgcgcacc gccgcgccct gatcgaaacc gtgttccagc aataaaaaac cgccttccgc
     1981 caaacggtcg ggcgcgcctt gcgccaaggt gcggatgcag cttaggccgt ctgaaaagtc
     2041 ggtcagcgcg atttgcggct caaaccgcaa atcgccttgc gacaaatgtt tatcaccgtt
     2101 ttcgatatag ggcgggttgg acacgatgat gtcccatttc ccttcagacg gcatatcggt
     2161 gtcgaaccac gaaccgtgtg caaattcgac ccgcgcgccc aaatccgccg catttttccg
     2221 cgccgtttca agggagggcg ggctgatgtc ggatgcgcgc acaaacgcat cggggcgttc
     2281 gagcgcgacg gttacggcaa ccgcgccgct gcccgtcccc aaatcccaca cgcgcccgtt
     2341 ttccggcagg cgcgccaata cggcttcgac caaatgttcg gtttcggggc gcggaatcag
     2401 cacattcggg ttgacggcga aacgccgtcc gtaaaactcg cgccagccca acagataggc
     2461 aaccggctcg ccgttcagac ggcgttgcgc cagcctgtcc gcccgctgtc ggacttcgtc
     2521 cggcatttct tcaccgcccc gcgtcaacaa ctgcacgcgc gtatattccg aagcatattg
     2581 cagcagcatt cttgcttcat ttttgggcag ttttgacaag cccaaccatt cgtcaaacgt
     2641 catttttatc ccgtctgccg ctgatgcggc ttttctttcc ttattctttc cggcaaacgt
     2701 accgatggtg gcaaccgcaa atgcggcata ccacaaataa aatcctgcac cgtagcgcac
     2761 aatatccgat gtattccctg cttcatcgac gtatacggct ttcacactga aagccaccaa
     2821 cgccaagccc caaagtgccg catggacagg cacgaccttc ttccgcaacg ccagcaaaac
     2881 aatggccgcc aaccaaacat aattcgcata gaccgcacaa tacctgatat ccaaagaagc
     2941 aaatatcgac cccaaaatca aaacggtcaa accctccatg cttccatgat tgcccaaata
     3001 aaatgcaaca ttggataaag acgctatcca cagggcaacc gacaccagca acatcactat
     3061 gggaaaactt gatttccgat tctgttcctg catggtttta tcctaatgta aaaggccgcc
     3121 tgaaaacctt tcagacggca tcgtgccgga ttccgcgtca gattgcgctg ccgccgacgg
     3181 tcagcccggc atcgatacgc agggtcggct gccccacgcc gacggggacg ctctgccctt
     3241 ctttgccgca cacgccgaca ccgctgtcca acgcggtatc gttgcctatc atcgaaacgt
     3301 gtttcagcac ttcgggcccg ttgccgataa tggtcgcgcc tttgacgggg tattgcagcc
     3361 tgccgccttc cacccaccat gcttcggacg cgctgaacac aaatttgccg ctggtaatgt
     3421 ccacctgtcc gccgccaaag ttgacggcgt aaatgccttt gtcgatggac gcgatgattt
     3481 cttccggctc atagctgcca ttttccataa aggtattggt catgcgcggc atcgggacgg
     3541 aggcgtagct ttcgcggcgg ccgttgccgg tggattgcgt acccgtcagg cgggcattgg
     3601 tttcgtcctg catatagccg actaaaatgc cgtcttcaat caatacggtg cggcgggttt
     3661 cgttgccttc gtcgtcgatg ttgagcgaac cgcgccggcc ggcaatatcg ccctgatcga
     3721 cgacggtaac gcctttggcg gcgacgcgct cgcctattct gccggaaaag acgctggtcc
     3781 ccttgcggtt gaaatcgcct tccaaaccgt gtccgaccgc ttcgtgcagc aacacgcccg
     3841 gccagccgtt gcccaaaacg acggtcattt cgccggcggg cgcggggcgg gattcgaggt
     3901 tggtgagtgc ctgtttgacg gcggcatcga caaactgccg caccaagttt tcatcgaaat
     3961 aagccaagtc gtagcgtccg ccgccgcccg cgctgccctg ttcgcggcgt tcgccctgtt
     4021 tggcgatgac ggtaacgttc aggcgcacca tcgggcggat gtcggcggcg tgtttgccgt
     4081 ccagacgggc gaggtaaacc atatcgtatt cgcaggtcaa accggccatc acttgcacga
     4141 tgcgcggatc ggcggctttg gcgattgctt ccactttgtt caacagcgcg actttggcgg
     4201 cggaatcgag gccggcaatg gggtcggacg cggaacaaac cggcttgccg cgcgtttcag
     4261 acggcatttt ggcggacacc ttgccgcctg ccgccccaat cgcgcggacg gcgcgggcgg
     4321 aacggtttat cgaatcgatg cacaggctgt cggcgtaggc aaaggcggtt ttgtcgcccg
     4381 aaacggcgcg cacgcccacg ccctgattga tttggaagct gcccgatttg acgatgccct
     4441 cttccaaatg ccagctttca taagcggtgc gctggcagta gatgtcggcg taatcgacgt
     4501 ggtgcgcgcc gatgatgcac aggcttttgg cgagcagttc gggggaaagg cggttggctt
     4561 cgagcagccg cgcctgtacg gcggaatagg tcggatgcat agtgtcggcg cataaaaaat
     4621 caggggcttg attatacggc atttgttata tagtggatta acaaaaaaca gtacggtgtt
     4681 gcctcgcctt gccgtactat ttgtactgtc tgcggcttcg tcgccttgtc ctgatttttg
     4741 ttaatccact atagaaatgc gccgtgccgc ctgaaatgta agatttttgc caacgccccc
     4801 tgcttttgtg tacacttaaa gctccttgtc ggagtgccgc cgccgggcgg ctgagattgc
     4861 gaaagcagaa tccgtagaac ctgtcggggt aatgcctgcg taggaaacaa accgtcaaat
     4921 gccttatcag gcttccgttc ccttttccgc acttccccgc ccaccttcct tctttttaaa
     4981 ggacgtcata tgtcgggcaa tgcctcctct ccttcatctt ccgccgccat cgggctgatt
     5041 tggttcggcg cggcggtctc gattgccgaa atcagcacgg gtacgctgct tgcgcctttg
     5101 ggctggcaac gcggtctggc ggctctactt ttgggtcatg ccgtcggcgg cgcgctgttt
     5161 tttgcggcgg cgtatatcgg cgcactgacc ggacgcagct cgatggaaag cgtgcgcctg
     5221 tcgttcggca aacgcggttc agtgctgttt tccgtggcga atatgctgca actggccggc
     5281 tggacagcgg tgatgattta cgccggcgca acggtcagct ccgctttggg caaagtgttg
     5341 tgggacggcg aatcttttgt ctggtgggca ttggcaaacg gcgcgctgat tgtgctgtgg
     5401 ctggttttcg gcgcacgcaa aacaggcggg ctgaaaaccg tttcgatgct gctgatgctg
     5461 ttggcggttc tgtggctgag tgccgaagtc ttttccacgg caggcagcac cgccgcacag
     5521 gtttcagacg gcatgagttt cggaacggca gtcgaattgt ccgccgtcat gccgctttcc
     5581 tggctgccgc tggccgccga ctacacacgc caagcacgcc gcccgtttgc ggcaaccctg
     5641 acggcaacgc tcgcctatac gctgacgggc tgctggatgt atgccttggg tttggcagcg
     5701 gcgttgttca ccggagaaac cgacgtggca aaaatcctgc tgggcgcagg tttgggtgcg
     5761 gcaggcattt tggcggtcgt cctgtcgacc gttaccacca cttttctcga tgcctactcc
     5821 gccggcgtaa gtgccaacaa tatttccgcc aaactttcgg aaacacccat cgccgttgcc
     5881 gtcgccgttg tcggcacact gcttgccgtc ctcctgcccg ttaccgaata tgaaaacttc
     5941 ctgctgctta tcggctcggt atttgcgccg atggcggcgg ttttgattgc cgactttttc
     6001 gtcttgaaac ggcgtgagga gattgaaggc tttgactttg ccggactggt tctgtggctg
     6061 gcgggcttca tcctctaccg cttcctgctc tcgtccggct gggaaagcag catcggtctg
     6121 accgcccccg taatgtctgc cgttgccatt gccaccgtat cggtacgcct tttctttaaa
     6181 aaaacccaat ctttacaaag gaacccgtca tgacccgtat cgccatcctc ggcggcggcc
     6241 tctcgggaag gctgaccgca ctgcagcttg cagaacaagg ttatcagatt gcacttttcg
     6301 ataaaggctg ccgccggggc gaacacgccg ccgcctatgt tgccgccgcc atgctcgcgc
     6361 ctgcggcgga agcggtcgaa gccacgcccg aagtggtcag gctgggcagg cagagcatcc
     6421 cgctttggcg cggcatccga tgccgtctga acacgcacac gatgatgcag gaaaacggca
     6481 gcctgattgt gtggcacgga caggacaagc cattatccag cgagttcgtc cgccatctca
     6541 aacgcggcgg cgtagcggat gacgaaatcg tccgttggcg cgccgacgac atcgccgaac
     6601 gcgaaccgca actcggcgga cgtttttcag acggcatcta cctgccgacc gaaggccagc
     6661 tcgacgggcg gcaaatattg tctgcacttg ccgacgcttt ggacgaactg aacgtccctt
     6721 gccattggga acacgaatgt gcccccgaag acctgcaagc ccaatacgac tggctgatcg
     6781 actgccgcgg ctacggcgca aaaaccgcgt ggaatgcttc tgccgaacac ggcagcaccc
     6841 tgcgcggcat acgcggcgaa gtggcgcggg tttacacacc cgaaatcacg ctcaaccgcc
     6901 ccgtgcgtct gctccatccg cgttatccgc tctacatcgc cccgaaagaa aaccacgtct
     6961 tcgtcgtcgg cgcgacccaa atcgaaagcg aaagccaagc ccctgccagc gtgcgttccg
     7021 ggctggaact cttatccgca ctctatgccg tccatcctgc cttcggcgaa gccgacatcc
     7081 tcgaaatcgc taccggcctg cgccccacgc tcaaccacca caaccccgaa atccgttaca
     7141 gcctcgcccg acgcctgatt gaaatcaacg gccttttccg ccacggcttc atgatttccc
     7201 ccgccgtaac cgccgccgcc gtcagattgg cagtggcact ggttgacgga aaagacgcgc
     7261 ccgaacgtga tgaagaaagc ggtttggcgt atatccgaag acaagattaa agccgtctga
     7321 aaggaacccc atgaccttcc cgcccttgaa atccccgctc aaattctacg ccgtcgtccc
     7381 caccgccgat tgggtggggc gcatggtcaa agcaggtgcc gacacggtgc aactgcgctg
     7441 caagaccctg cacggcgatg aattgaaacg cgaaatcgcc cgctgcgtcg ccgcctgtca
     7501 aggcagccgt acgcagcttt tcatcaacga ccactggcgc gaggcaatcg aagcaggcgc
     7561 gtacggcgtg catctcggac aagaagacat ggacaccgcc gaccttgccg ccatcgccgc
     7621 cgccggtttg cgcttgggtt tgagtacgca ctccgttgcc gaactcgacc gcgccctgtc
     7681 cgtacaccct agctacgtcg ccagcggcgc gattttcccg accacgacca agcaaatgcc
     7741 caccgccccg caaggcttgg acaaactgtg cgagtatgtg aaacaggcag gcggcacgcc
     7801 cgtcgtcgcc atcggcggta tcgacttgaa caacgcccga gccgtactcg ccaccggcgt
     7861 ttcctcactc gccgccgtcc gcgccgtgac cgaagcggaa aatcccgaag cggtggttaa
     7921 agcgtttcag gctttgtggg atggataaaa ccgaaagaag aaaattcaat ttgccgtgtc
     7981 ggcaaaactt agcccgttat cgcaaacata cttaacttta aatgtggcat atcatcaaat
     8041 tccgtcattt ccgcgcaagc gggaatccgc cttaaaactt gagaaaccat catttgaaaa
     8101 acagtttccg aatttcaaaa atggattccc gcctgcgcgg gaatgacggc aaccggccgg
     8161 ttgcgtatca aaaaataaag taattcggct
//
LOCUS       DAXIFD010000092         8112 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.092, whole genome shotgun sequence.
ACCESSION   DAXIFD010000092 DAXIFD010000000
VERSION     DAXIFD010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8112
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.092"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(209..1405)
                     /locus_tag="ACFOCN_001382"
     CDS             complement(209..1405)
                     /locus_tag="ACFOCN_001382"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6970521.1"
                     /translation="MSQKLILVLNCGSSSLKGAVLDNGSGEVLLSCLAEKLNLPDAYI
                     TFKVNGEKHKVDLSAHPNHTGAVEALMEELKAHGLDSRIGAIGHRVVSGGELYSESIL
                     VDDEVIAGIEKCIPLAPLHNPAHLLGLRAAQSIFKDLPNVVVFDTSFHQTMPEVAYKY
                     AVPQELYEKYGLRRYGAHGTSYRFVADETARFLGKDKKDLRMVIAHLGNGASITAVAN
                     GESRDTSMGLTPLEGLVMGTRSGDIDPSVFGFLAENANMTIAQITEMLNKKSGLLGIS
                     GLSNDCRTIEEEAAKGHKGAKLALDMFIYRLAKYIGSMAVAAGGLDALVFTGGIGENS
                     DIIRERVIGYLGFLGLNIDQEANLKARFGNAGVITTADSKAVAVVIPTNEELMIAHDT
                     ARLSGL"
     gene            1756..2055
                     /locus_tag="ACFOCN_001383"
     CDS             1756..2055
                     /locus_tag="ACFOCN_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970522.1"
                     /translation="MHYFSIHDQSGRHIGFFILLADDESEARPQSGRFAVKLEGGMEN
                     HVLSPFGQTEIPQYWRVVKDRIELFFDEAPVGTLRNEYLTVSGQTFVLNDLTGNM"
     gene            2055..2240
                     /gene="ccoS"
                     /locus_tag="ACFOCN_001384"
     CDS             2055..2240
                     /gene="ccoS"
                     /locus_tag="ACFOCN_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HFC6970523.1"
                     /translation="MESMFILVPISIILAFVIGWFFWWSGKNGQFDDLEGPAHRILMD
                     DDSTSKLIEKERENDVR"
     gene            2230..3540
                     /locus_tag="ACFOCN_001385"
     CDS             2230..3540
                     /locus_tag="ACFOCN_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6970524.1"
                     /translation="MYAKKGGLGLVKSRRFAPLFATQFLGAFNDNVFKTALFVMIGFY
                     GLGQNGFLPAGQMLNLGALLFILPYFLFSSLSGQLGNKFDKAVLARWVKVLEMIIMAV
                     AAYGFYIRSAPLLLACLFCMGAQSTLFGPLKYAILPDYLDDKELMMGNSLIESGTFVA
                     ILFGQILGTAVAGVPPYIVGILVLLVAVGGTVGSLFMPSVPAKAADTQIEWNIVRGTK
                     SLLRETVRYKPVFTAIIGISWFWFVGAVYTTQLPTFTQIHLGGNDNVFNLMLALFSIG
                     IAAGSVLCAKFSRERLMLAWVTVGALGLTVCGLVLVWLTHGHRFEGLNGIFWFLSQGW
                     AYPVMAVMTLIGFFGGFFSVPLYTWLQTASSETFRARAVAANNIVNGIFMVSAAVLSA
                     VLLFLFDSISLLYLIVALGNIPLSVFLIKRERRFLGAAAIRKKP"
     gene            3698..4432
                     /gene="dnaQ"
                     /locus_tag="ACFOCN_001386"
     CDS             3698..4432
                     /gene="dnaQ"
                     /locus_tag="ACFOCN_001386"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HFC6970525.1"
                     /translation="MIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLY
                     VHPERDMPEEAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFL
                     NMEFRRMGLPTVEELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALI
                     DCELLGEVYLAMTRRQFDLMGAAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHG
                     QYLDGLGEACIWRKEAVPSENGGTDA"
     gene            4429..5118
                     /gene="ispD"
                     /locus_tag="ACFOCN_001387"
     CDS             4429..5118
                     /gene="ispD"
                     /locus_tag="ACFOCN_001387"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HFC6970526.1"
                     /translation="MKRKNIALIPAAGIGARFGADKPKQYVEIGSKTVLEHTLGIFER
                     HEGVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAET
                     DNILVHDAARCCLPSEALTRLIEQAGNAAEGGILAIPVADTLKRADGGNISATVERTS
                     LWQAQTPQLFRAGLLHRALAAENLDGITDEASAVEKLGIHPLLVQGDARNLKLTQPQD
                     AYIVRLLLDAV"
     gene            5150..5632
                     /gene="ispF"
                     /locus_tag="ACFOCN_001388"
     CDS             5150..5632
                     /gene="ispF"
                     /locus_tag="ACFOCN_001388"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HFC6970527.1"
                     /translation="MTNIRIGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALL
                     HAVTDALLGAAGLGDIGSHFPDTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVI
                     AQKPKLAPHIPQMRANIAADLGIDISCVNIKGKTNEKLGYLGRMEGIEAQAAVLLVRI
                     "
     gene            5709..6380
                     /gene="rpiA"
                     /locus_tag="ACFOCN_001389"
     CDS             5709..6380
                     /gene="rpiA"
                     /locus_tag="ACFOCN_001389"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HFC6970528.1"
                     /translation="MTTQDELKRIAAEKAVEFVPENEYIGIGTGSTINFFIEALGKSG
                     KKIKGAVSTSKKSSELLAQYDIPVVSLNEVSGLAVYIDGADEVNHALQMIKGGGGAHL
                     NEKIVASASEKFVCIADESKYVSRLGKFPLPVEVVESARSLVSRKLLAMGGQPELRIG
                     YTTFYGNQIVDVHGLNIDKPLMMEDEINKITGVLENGIFARDAADVLILGTEEGAKVI
                     YPCQG"
     gene            6449..7120
                     /locus_tag="ACFOCN_001390"
     CDS             6449..7120
                     /locus_tag="ACFOCN_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HFC6970529.1"
                     /translation="MQIKKIMKWLPVALSLLGALGYTGYGSEAVRTAVAVLDVLGAAG
                     DAGSDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQA
                     YGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSY
                     AKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGNKDWMDAVGE
                     WLGIW"
     gene            7136..7315
                     /locus_tag="ACFOCN_001391"
     CDS             7136..7315
                     /locus_tag="ACFOCN_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970530.1"
                     /translation="MNGKCRLKTARPAFLRRRATAVCRDKKVQAAVFTVKWRIILQRR
                     QFRRFLIRTVYGFSF"
     gene            7299..8045
                     /locus_tag="ACFOCN_001392"
     CDS             7299..8045
                     /locus_tag="ACFOCN_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6970531.1"
                     /translation="MDFRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALAR
                     LIHLEKAGAPMRVLAWALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILV
                     SGEAAIALRRGYGPLIAGSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQ
                     AMRYVILPQALRRMLPPLASEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPL
                     YTVALIYLLMTTFLGWIFLRLEKRYNPQHR"
BASE COUNT         1801 a         1974 c         2427 g         1910 t
ORIGIN      
        1 tcaggacaag gcgacgaagc cgcagacagt acagatagta cggcaaggcg aggcaacgcc
       61 gtactgattt aaatttaatc cactataagg ttcaggtaag cggctgcaac cgtcaatgtc
      121 tgaaaagagg cagtgctgtt taagcatgga aagccggata aaaaaaactg cctccgtttc
      181 cggaggcagt tcgtgtgcgg ataaaacctt acagaccgct caaacgggca gtgtcgtggg
      241 caatcatcag ctcttcgttg gtcggaatga ccacggcaac ggctttgctg tcggcagtgg
      301 taatcacgcc ggcgttgccg aagcgggctt tcaggttggc ttcttggtcg atgttcagac
      361 cgaggaagcc caagtagccg atcacgcgtt cgcggatgat gtcggagttt tcgccgatgc
      421 cgccggtaaa gaccagtgcg tccaaaccgc ctgcggcaac cgccatactg ccgatgtatt
      481 tggcaaggcg gtagataaac atatccaagg ccaatttcgc gcctttatgc cccttggcgg
      541 cttcttcttc aatggtgcgg cagtcgttgg acaggccgga aatgccgagc agaccggatt
      601 ttttgttcag catttcagtg atttgggcga tggtcatatt ggcgttttcg gcgagaaagc
      661 cgaatacgga aggatcgatg tcgccgctgc gcgtacccat taccagccct tccagcgggg
      721 tcaggcccat actggtgtcg cgcgattcgc cgttggcgac ggcggtaatg gacgcgccgt
      781 tgcccaagtg ggcaatgacc atacgcaggt cttttttgtc tttgccgagg aagcgcgcgg
      841 tttcgtcggc gacgaagcgg tagctggtac cgtgcgcgcc gtaacggcgc aggccgtatt
      901 tttcatacaa ctcctgcgga acggcgtatt tgtaggcgac ttcgggcatg gtttggtgga
      961 aggaggtatc gaatacgacg acgttgggca ggtctttgaa aatgctttgc gcggcacgca
     1021 ggcccaagag gtgggcgggg ttgtgcaggg gggcgagcgg gatgcatttt tcgatgccgg
     1081 caatgacttc gtcgtcaacg aggatggatt cgctgtacag ttcgccgccg ctgacgacgc
     1141 ggtggccgat ggcgccgatg cggctgtcga ggccgtgggc tttgagttct tccatcaggg
     1201 cttcgaccgc gccggtgtgg ttgggatgtg cggacagatc gactttgtgt ttttcgccgt
     1261 ttactttgaa tgtgatgtag gcatcgggca ggttgagttt ttcggcaagg cagctgagca
     1321 ggacttcgcc gctgccgtta tccaggaccg cgcctttgag ggacgagctg ccgcagttca
     1381 aaaccaagat caatttttgg gacattttct tactccggaa agtttcagac ggcattggaa
     1441 tcggacacgg atactaaccg gattcgtgcc gaatccgttt tgccttcctg ggcgggaaag
     1501 tagtggggcc gtctgaaaag gttgataaaa gaagcaggct attctagcaa aaaatctttg
     1561 caattgcttg gcttaatcgg gcgtttgcgt gaaaatggcg gaagtcgggc attttgacgg
     1621 aaaaaagggg gatatgcggt ttgccggtgt tttcggctgg gggagggaga atttctttgc
     1681 attcttcccg tccaaactgg tacattcgcc ctgtttttag ttggtgtcgt ctgaaaaaag
     1741 gcgggtggga aatttatgca ttatttcagt attcatgacc aatcgggacg gcatataggc
     1801 tttttcatcc tgcttgccga cgacgaatcg gaagcacggc cgcaaagcgg gcgttttgcc
     1861 gtcaaacttg aaggcggaat ggaaaatcat gtcctgtcgc cgttcggtca gacggaaatc
     1921 ccccaatatt ggcgcgtggt caaagaccgt atcgagctgt tttttgacga agctcccgtc
     1981 ggaactttgc gtaacgaata tctgaccgtg tcggggcaga cttttgtttt gaacgatttg
     2041 acagggaata tgtgatggaa agcatgttta tattggtgcc catcagcatt attttggcgt
     2101 ttgtcatcgg ctggtttttt tggtggtcgg gcaaaaacgg gcagtttgac gacttggaag
     2161 ggccggcgca ccgcatcctg atggatgatg attcgacaag taaactgatt gaaaaagaga
     2221 gggaaaacga tgtacgctaa aaaaggcggt ttgggactgg ttaaaagccg ccgtttcgca
     2281 cctcttttcg ctacgcagtt tctcggcgcg ttcaacgaca atgtgttcaa aaccgcgctg
     2341 tttgtgatga ttgggtttta cggtttgggg caaaacggct tcctgcctgc cggacagatg
     2401 ttgaacttgg gcgcgttgtt gtttattttg ccgtatttcc tgttttcctc gctgtcgggg
     2461 cagttgggta acaaattcga caaggccgtt ttggcgcgtt gggtcaaggt gctggaaatg
     2521 atcattatgg cggtggcggc atacgggttt tatatccggt ctgccccgct gcttttggcg
     2581 tgtctgtttt gcatgggcgc gcaatcgacg ctgttcgggc cgctgaaata cgccatcctg
     2641 cccgattatc tcgacgacaa agagttgatg atgggcaaca gcctgattga atcgggtacg
     2701 tttgtcgcca tcctgttcgg tcagattttg ggaacggcgg tggcaggtgt accgccttat
     2761 attgtcggga tactggtttt gctggtcgcc gtcggaggca cggtcggcag cctgtttatg
     2821 ccgtccgtcc ccgccaaggc tgccgatacc caaattgagt ggaatattgt ccgtggcaca
     2881 aaatccctgc ttcgtgaaac ggtgcggtac aaacccgtct ttaccgctat tatcggtatt
     2941 tcgtggtttt ggtttgtcgg cgcggtttat accacgcaac tgccgacctt tacccaaatc
     3001 catctgggcg gcaacgacaa tgttttcaac ctgatgcttg ccctgttttc catcggtatt
     3061 gccgccggtt cggtactgtg tgccaagttc agcagggaac gcctgatgtt ggcttgggta
     3121 acggttggtg cgttgggttt gacggtttgc ggcctggttt tggtgtggct gacgcacgga
     3181 caccgttttg aagggctgaa cggcattttt tggtttttat cgcaaggatg ggcatatccc
     3241 gtgatggcgg tgatgacgct gatcggcttt ttcggcggat ttttctccgt tccgctctat
     3301 acctggctgc aaaccgccag tagcgagact ttccgcgccc gcgccgttgc cgccaacaat
     3361 atcgttaacg gtatttttat ggtttccgcc gccgttttga gcgcggtgtt gctgtttttg
     3421 tttgacagca tttccttgtt gtatctgatt gtcgctttgg gcaatattcc gttgtcggta
     3481 tttttgatta agcgcgaaag gcggttttta ggcgcggcgg caatcaggaa aaaaccttga
     3541 atgccgtctg aaaaaattgt ccccaaaata cacaatccgc ctgcccaatg ttgtgaacac
     3601 actgtgaata agtgggtttg tgcattgaaa tgaaaacaga aaaatatatt gcttaaaaaa
     3661 tagtcagcag atggaaaatt tgaagaaaga agcagacatg attcaacgcc aaatcatcct
     3721 cgataccgaa accaccggtc tgtatgccga cggcggcgac cgcttggtcg agtttgccgg
     3781 tttagaaatg gtcaaccgcc aaatgaccga caaaaacctg cacctctatg tccaccccga
     3841 gcgcgatatg cctgaagagg cggcgagggt gcacggtctg acgatagagg ttttggaagg
     3901 gaaaaacgca ccgccttttg cagaggtcgg caggcagatt gccgatttcc tgcgcggtgc
     3961 ggaactgatt atccacaatg ccaaattcga cgtgggcttc ctcaatatgg agttccgccg
     4021 gatggggttg ccgaccgttg aggaactcgg ctgtaccgtt accgataccc tggcgatggc
     4081 gcgcgaaatg ttccccgggc agaaagccag cctggatgcc ctgtgcaacc gtttttccgt
     4141 cgaccgcagc aagcgcgtcc tgcacggcgc attgatcgac tgcgaacttt tgggcgaagt
     4201 ctatcttgct atgacgcggc ggcagttcga cctgatgggt gcggccgcag aggaaaaaat
     4261 ggaaaccaaa cccgtggtgc ataccgaaac caaacgcagc ggcaaactga aagtcatcag
     4321 ggcggacgaa aacgagttgg cggcgcacgg gcaatatttg gacggcttgg gcgaagcctg
     4381 tatctggcgc aaggaagccg tgccgtctga aaacggcggg acggacgcat gaagcgcaaa
     4441 aatatcgcgc tgattcccgc cgccggcatc ggggcgcgtt tcggtgcgga caaacccaag
     4501 caatatgtcg aaatcggaag caaaaccgtt ttagaacata cgcttgggat ttttgaacgg
     4561 catgagggcg tcgatttgac cgtcgttgtc gtctcgcccg aagacacgtt tgccgataag
     4621 gttcagacgg catttccaca ggttcgggtg tggaaaaacg gcggacagac ccgcgccgaa
     4681 accgtccgaa acggtgtggc aaaattgttg gaaaccggtt tggcggcgga aaccgacaat
     4741 attctggtac acgatgccgc gcgttgctgc ctgccgtctg aagctttgac gcggttgata
     4801 gaacaggcgg gcaacgctgc cgaaggtggg attttggcaa ttcccgttgc cgatacgctc
     4861 aagcgcgcgg acggtgggaa cattagtgca accgtcgagc ggacgagcct ttggcaggca
     4921 caaacgccgc agcttttccg cgccgggctg ctgcaccgcg cattggctgc ggaaaacttg
     4981 gacggcatta ccgatgaagc gtccgccgtc gaaaaattgg gcatccaccc tttgctggtg
     5041 cagggcgacg cgcgcaattt gaaactgacg cagccgcagg acgcatacat cgtcaggctg
     5101 ctgctcgatg ccgtctgaac ttcaattcaa aacatcagga acacaaacga tgacgaacat
     5161 ccgtatcgga cagggctacg atgtccacca actgaccgaa ggcagaaagc tgatacttgg
     5221 cggagttgaa atcccatttg aaaaagggct gctcggacac tccgatgccg atgcgctgct
     5281 gcacgccgtt accgacgcgc tgctcggtgc ggcaggtttg ggcgatatcg gcagccattt
     5341 ccccgacacc gccgcagagt tcaaagatgc ggacagccgc gtccttttgc gtgcggcgta
     5401 tcaaagcgtt caggcgcagg gttggcaggc ggtcaatgtc gatacgaccg tgattgcaca
     5461 gaaacccaaa ctcgcgccgc atattccgca aatgcgtgcc aacatcgccg ccgatttggg
     5521 catagacatt tcgtgcgtca acatcaaagg caaaaccaac gaaaaactcg gttatctcgg
     5581 gcgcatggaa ggcatagagg cgcaggcggc ggtattgctg gtacggattt gaacgcggcg
     5641 ggcaggacgt gcaaaaaaat gttaagatgg cggctgtttg ttgatacggt ttcccaaagg
     5701 acaaaaatat gacgacacaa gacgaactca agcgcatcgc cgccgaaaaa gcagtcgaat
     5761 tcgtacccga aaacgaatac atcggcatcg gtaccggctc gaccatcaac tttttcatcg
     5821 aagccttggg taagagcggc aaaaaaatca aaggcgcggt atctacttcc aaaaaatcca
     5881 gtgaactgct tgcccaatat gatattcccg tcgtttccct gaacgaagta tcggggttgg
     5941 cggtctatat tgacggtgcg gatgaagtga accacgccct gcaaatgatt aaaggcggcg
     6001 gcggcgcaca cctcaacgaa aaaatcgtcg ccagcgcatc agaaaaattc gtctgcattg
     6061 cggacgaaag caaatatgtt tcacgtttgg gcaaattccc tctgcccgtg gaagtcgtcg
     6121 aaagcgcgcg ttcccttgtt tcgcgcaaac tgctcgctat gggcggacag cctgaattgc
     6181 gtatcggcta caccactttt tacggcaacc aaatcgtcga tgtccacggc ttgaatatcg
     6241 acaaaccgct gatgatggaa gacgaaatca acaaaatcac cggcgtactc gaaaacggaa
     6301 tattcgcccg cgatgccgcc gatgtgttga ttttggggac ggaagagggt gcgaaagtca
     6361 tctatccctg ccaagggtaa tcctgacgtt aagatgccgt ctgaaatccg gttcagagat
     6421 gttcagacgg catcggcatt tgaaaaatat gcagattaaa aaaatcatga aatggcttcc
     6481 cgtcgccctg tcgcttttgg gtgcgttggg ttatacgggg tacggcagcg aggcggtgcg
     6541 gacggcggtt gccgtactcg acgtactcgg cgcggcaggg gacgcgggtt ccgacgcgcc
     6601 cgcccgccgc cgagcatcgg cgaaatccgg ccaccgctac acaggcacgg tgtccaaagt
     6661 ctatgacggc gacacccttc acgttatcga cggcgacggc gcgaaacaca aaatccggat
     6721 ggcgtatatc gacgcgccgg agatgaaaca ggcttacggc acgcgttcgc gcgacaacct
     6781 gcgcgcggcg gcggaaggca ggaaagtcag cgtgcgcgtg ttcgacaccg accgctacca
     6841 gcgcgaagtg gcgcaggttt ctgtcggcaa aaccgatttg aacctgatgc aggtgcagga
     6901 cggggcggcg tggcattata aaagttatgc taaagaacag caggataagg cggattttgc
     6961 cgattatgcc gacgctcaaa ttcaggcgga aagggaacgc aaaggattgt ggaaagctaa
     7021 aaatccgcaa gcgccgtggg cgtaccgccg ggcaggcagg agcggcgggg gcaataagga
     7081 ttggatggat gccgtgggcg aatggttggg catttggtaa agacagcgca cggctttgaa
     7141 cggcaaatgc cgtctgaaaa ccgcgcgccc tgcatttttg cggagacgcg caaccgccgt
     7201 ctgccgcgat aaaaaagttc aggcggcggt ttttacggta aaatggcgga ttattttgca
     7261 acggcggcag ttccgccggt ttttgatacg gacggtatat ggattttcgt tttgacatta
     7321 tttacgaata ccgctggatg ttcctttacg gcgcactgac gaccttgggg ctgacggtcg
     7381 tggcgacggc gggcggttcg gtattgggtc tgttgttggc gttggcgcgc ctgattcact
     7441 tggaaaaagc cggtgcgccg atgcgcgtgc tggcgtgggc gttgcgtaaa gtttcgctgc
     7501 tgtatgttac gctgttccgg ggtacgccgc tgtttgtgca gattgtgatt tgggcgtatg
     7561 tgtggtttcc gtttttcgtc catccttcag acggcatttt ggtcagcggc gaggcggcaa
     7621 tcgcgctgcg tcgcggatac gggccgctga ttgccggttc tttggcactg atcgccaact
     7681 cgggggcgta tatctgtgag attttccgcg cgggcatcca gtctatagac aaaggacaga
     7741 tggaggcggc gcgttctttg gggctgacct atccgcaggc gatgcgctat gtgattctgc
     7801 cgcaggcatt gcgccgcatg ctgccgcctt tggcgagcga gttcatcacg ctcttgaaag
     7861 acagctcgct gctgtcggtc attgctgtgg cggagttggc gtatgttcag aatacgatta
     7921 cgggccggta ttcggtttat gaagaaccgc tttacaccgt cgccctgatt tatctgttga
     7981 tgacgacttt cttaggctgg atattcctgc gtttggaaaa acgttacaat ccgcaacacc
     8041 gctgattgga gtcatatcaa caaaaagctg cccgggtatt catttgaggc agcttttttg
     8101 tggcaaattt at
//
LOCUS       DAXIFD010000093         7929 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.093, whole genome shotgun sequence.
ACCESSION   DAXIFD010000093 DAXIFD010000000
VERSION     DAXIFD010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7929
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.093"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            334..1647
                     /locus_tag="ACFOCN_001393"
     CDS             334..1647
                     /locus_tag="ACFOCN_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HFC6970532.1"
                     /translation="MLTFIGLLIIGVIVWLLLTEKVSPIIALILVPLFGALLAGFDVS
                     QLKEFYSGGTKSVMQIVIMFMFSILFFGIMNDVGLFRPMIGGLIKLTRGNIVAVSVGT
                     VLVSVVAQLDGAGATTFLLVVPALLPLYKRLHMNPYLLFLLLTSSAGLINLLPWGGPT
                     GRVASVLGADVGELYKPLLTVQIIGVVFILALSLLLGVREKRRIVRELGALPAVADLI
                     KPVPLSEEEQKLARPKLFWWNVLLFLAAMSLLFSGIFPPGYVFMLAATAALLLNYRSP
                     QEQMERIYAHAGGAVMMASIILAAGTFLGILKGAGMLDAISKDLVHILPDALLPYLHI
                     AIGVLGIPLELVLSTDAYYFGLFPIVEQITSQAGVAPEAAGYAMLIGSIVGTFVTPLS
                     PALWMGLGLAKLSMGKHIRYSFFWAWGLSLAILASSIAAGIVPLP"
     gene            1870..2045
                     /locus_tag="ACFOCN_001394"
                     /pseudo
     CDS             1870..2045
                     /locus_tag="ACFOCN_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692565.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            2041..3291
                     /locus_tag="ACFOCN_001395"
     CDS             2041..3291
                     /locus_tag="ACFOCN_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6970533.1"
                     /translation="MFVPLAMLAGMFSYYETFHETEALQDDLLRQAALYVAPDSKPET
                     LPEGDGDTRILVQMPQQEDPVVSLPAHLADGLHTLQADGDDDYYRVYIRTTEQGRIAV
                     MQENEYREDLAADAARQSVLPLLAALPLMILLTVWITHKAMRPVRKLSQSLEQRRIND
                     LSALSVDNIPSEIRGFVTAINLLLKRADEDIRHRQRFVADAAHELRTPMTALSLQAER
                     LNNMSLPPDAARQPAVLQQSIRRNKHLLEQLLALARSQSDETPLTKTTFGLQSRFRQV
                     LQELMPLALEKRQDIGVAVRGDVEVSADETEIYTLIKTFADNAVRYTPPEGRIDLGFT
                     DEGKYLAVWVEDNGNGIPESERARVLDPFYRILGMEQQGTGLGLSIADTLATEYGRYL
                     ELSDSRRFGRGLLIRALLDKESLK"
     gene            complement(3325..4818)
                     /gene="rng"
                     /locus_tag="ACFOCN_001396"
     CDS             complement(3325..4818)
                     /gene="rng"
                     /locus_tag="ACFOCN_001396"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HFC6970534.1"
                     /translation="MLSGLPIPKDIARPPETILVNITPQETRVAVLEENNICELHIER
                     NSEHSLVGNIYLGVVRRVLPGMQSAFIDIDLERAAFLHIVDVLEQRRNPEETQRIEHM
                     LFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVSQRIEDDAERSSL
                     RERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQAKIRPPETLLY
                     QDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELFKGERPLFE
                     THNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLE
                     ACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLG
                     LVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRI
                     LAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDIVLM"
     gene            5031..5288
                     /gene="grxC"
                     /locus_tag="ACFOCN_001397"
     CDS             5031..5288
                     /gene="grxC"
                     /locus_tag="ACFOCN_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HFC6970535.1"
                     /translation="MQTVTMYTGPFCPYCAMAKRLLHAAGVGHIDEIRVDASPEAFAE
                     MQQLSGQRSVPQIFIGETHVGGFTDLYRLQQEGGLDGLLNP"
     gene            5309..5752
                     /gene="secB"
                     /locus_tag="ACFOCN_001398"
     CDS             5309..5752
                     /gene="secB"
                     /locus_tag="ACFOCN_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HFC6970536.1"
                     /translation="MSEELQPVFSIERLYVKDLSLEVPHAPQIFLEQGEPEVDMRVST
                     GSQKLEDGYYNVDVTVTVTAKLDNERTMFLNEVTQSGIFRLENIPEEDVQLLLGVACP
                     NILFPYAREAVSGTVTRAGFPPVLLAPINFEAIYQQQQEAEAAGA"
     gene            5838..7880
                     /gene="recG"
                     /locus_tag="ACFOCN_001399"
     CDS             5838..7880
                     /gene="recG"
                     /locus_tag="ACFOCN_001399"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFC6970537.1"
                     /translation="MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETH
                     IMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQ
                     TAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
                     QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKF
                     DELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKVVSEICRDM
                     AQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIKFKQWLE
                     PLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQH
                     RFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRL
                     VNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTATETLEQLQTALPELNIG
                     LVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH
                     QLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLG
                     ARQSGVPMLRFAKLEEDLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV"
BASE COUNT         1667 a         2062 c         2337 g         1863 t
ORIGIN      
        1 atcccgcgtg tacggcacgc cccgcgctcc gcaatgatag gggcggtttc gtttgaatcg
       61 gcgctccgca atgatagggg cggtttcgtt tgaatcggcg caccgggatg aatgcccccg
      121 cgccgtcccg ataccggttt gccggttgtt ccgtatcggt tgccgccgtg aaatgacgga
      181 cggatacagg aatggcggca ggcgtaaatg ggaggaaatg accgattgac ttgtttcaaa
      241 ataaaaaagt agaatgcaag gcttatcccg cgtctgtggg cggttttgcc tgcacggtcg
      301 gttttctgtt taaaataaaa taaaggagaa atgatgctga cgtttatcgg actgctgatt
      361 atcggggtca tcgtatggtt gctgctgacg gaaaaagtgt cgcccatcat cgcattaatc
      421 ttggtgccgc tgtttggggc gttgctggcg gggtttgatg tatcccaatt aaaagaattt
      481 tattcgggcg gcaccaaatc ggtgatgcag attgtgatta tgtttatgtt ttccattttg
      541 ttttttggaa tcatgaacga tgtggggctg ttccgtccga tgataggcgg tttgattaag
      601 ctgactcggg gtaatatcgt ggcagtgagt gtggggacgg tcttggtgtc ggtggtggcg
      661 cagttggacg gggcgggtgc gacgacgttt ttattggtcg tccccgccct tttgccgctt
      721 tacaagcgtc tgcatatgaa tccttacctg ctgtttttgc tgctgacttc cagtgcggga
      781 ttgattaacc ttctgccgtg gggcgggccg actgggcggg ttgcaagcgt gttgggcgca
      841 gatgtgggcg aattgtataa acctttgttg acggtgcaaa ttatcggtgt agtgtttatc
      901 cttgcgctgt ccctgctttt gggtgtgcgt gaaaaaaggc ggattgtccg ggagttgggc
      961 gcgttgcccg ccgtggcgga tttgataaag ccggtgcctt tgtcggaaga agaacaaaaa
     1021 ttggcgcgtc cgaaactgtt ttggtggaat gtcctgctgt ttttggcggc gatgagcctg
     1081 cttttttcgg gcatcttccc gccgggttat gtatttatgc tggctgcaac ggcggcgttg
     1141 cttttgaatt accgcagccc gcaggaacag atggagcgga tttatgccca cgccggcggc
     1201 gcggtgatga tggcgtccat tattttggcg gcaggtacgt ttttggggat tttgaagggt
     1261 gcggggatgt tggacgcgat ttccaaagac cttgtgcata tcctgccgga cgcgctgctg
     1321 ccttatctgc atattgccat cggtgtgttg ggcattccgc ttgagttggt tttgagtacg
     1381 gacgcttatt atttcggact gtttccgatt gtggagcaga ttacctcgca ggcgggcgtg
     1441 gcgcctgaag cagcaggtta tgcgatgttg atcggcagta tcgtcggcac ttttgttacg
     1501 ccgctttcgc cggctttgtg gatgggcttg ggtttggcga aattgtcgat gggcaaacac
     1561 atccgttatt cgtttttctg ggcgtggggt ttgtcgctgg cgatattggc cagttcgata
     1621 gcggcaggaa tcgtgcctct gccgtaaacg gcgaagccgt ctgaagcccg aatcgttcct
     1681 gtggtctgtc gcaggctctg cctgcctgcc cgtgtgttgc aatcgcgccc caatgccgtc
     1741 tgaaggcagt tgccggcgcg gtttttttgt gctgcagttt tgaaaaatac cggcaagcgt
     1801 aaagaccgct aaattgcggc taattttggg gtgttagaat aggcacggtt tattttgaag
     1861 ggaaagttga tgcgtgtttt gctggtggaa gacgatgcga tgattgcgga ggcggtgtcg
     1921 gcaagtttga aagacggcgg ctatgcggtg gattgggtca aaaacggcgc gcggttgccg
     1981 ctgcccagcc ttatgacttg atgctgctgg atttgggttt gccggggcgg gacggtttgg
     2041 atgtttgttc cgctggcaat gcttgcaggt atgttttcct actacgaaac cttccacgaa
     2101 acggaagcgt tgcaggacga cctgctccgt caggcggcat tgtacgtcgc ccccgattcc
     2161 aaacccgaaa ctttgcccga gggcgacggc gatacgcgta ttttggtaca gatgccgcag
     2221 caggaagacc ctgttgtcag cctgcctgcg catctggcgg acggtctgca cacgcttcag
     2281 gcggacgggg acgacgatta ttaccgcgtc tatatccgca cgaccgaaca gggacggatt
     2341 gccgttatgc aggaaaacga ataccgtgaa gatttggcgg cggatgcggc acggcaaagc
     2401 gtgttgcccc tgctggcggc actgccgctg atgatactgc tgaccgtgtg gattacgcac
     2461 aaagccatgc gccccgtccg caaattgtcg caaagtctcg aacaacgccg aatcaatgac
     2521 ctgtctgctt tgagtgtgga caatattccc agtgaaatca gagggttcgt aaccgccatc
     2581 aacctgcttt tgaaacgtgc ggatgaagac atccgccacc gtcagcggtt tgtcgccgac
     2641 gcggcacacg aattgcgtac gccgatgaca gccctttccc ttcaggcgga acggctcaac
     2701 aatatgtcgc tcccacccga tgcagcgcgg cagcctgccg ttttgcagca gagcatcagg
     2761 cgcaacaaac acctgctcga acagcttttg gcactggcgc gttcgcagtc ggacgaaacc
     2821 cctctgacga aaacgacatt cggtctgcaa agccgtttcc gccaagtgtt gcaggaactg
     2881 atgccgctgg ctttggaaaa acgtcaggac atcggtgtgg cggtcagagg cgatgtcgaa
     2941 gtgtctgccg acgaaacaga aatctatacg ctgattaaaa cctttgccga taacgcggta
     3001 cgttacacgc cgcctgaagg caggatagat ttgggtttca cggacgaagg gaaatatctt
     3061 gccgtgtggg tggaagataa cgggaacggc attcccgaat ccgaacgcgc ccgcgtcctc
     3121 gatccgtttt accgtatttt gggaatggag cagcagggga cggggctggg gctgtccatc
     3181 gccgacacgc ttgccacaga atacggcaga tatttggaat tgtccgacag ccgccggttt
     3241 gggcgcgggc tgctgatacg cgccttgttg gacaaggaat ccctgaaata gacagatgcc
     3301 gtctgaaggc ttcagacggc atttttacat caaaacgatg tcgtattgtt cctgcgtgta
     3361 agcggtttcg actgccagag aaatcggttt gccgatgaaa tctatcagca ttgccaagga
     3421 ttgcgattct tcgtccaaaa acaaatcgat gacgttgggg gcggcgagga tgcggaaact
     3481 ttcggcatcg taacggcgcg cttcgcggac gatttcgcgc tggatttcgt agcatacggt
     3541 ttgcggcgtt ttcagacggc ctctgccttg gcaggaaggg cagggttcgc agaggacttg
     3601 gtttaagttt tcgcgcgagc gtttgcgcgt cagctcgacc agtcccaggc tggtaaaacc
     3661 gtgcagggta acgcgggtac ggtcgaaggc gagggctttg gcaagctcct gcaacacggc
     3721 ttcgcggtgg ctttcctgcg ccatatcgat gaagtcgatg atgatgatgc cgccgaggtt
     3781 gcgcagcctc aattcgcggg cgatggtgtg gcaggcttcg aggttggtgc ggaaaatcgt
     3841 ttcatcgaaa ttgcgtgcgc cgacgaagcc gccggtgttc acgtctatcg tggtcatcgc
     3901 ttcggtggat tcgataatca ggtagctgcc gaagttgagg ttgacgcgcg gttgcagggc
     3961 gcggctgatt tcctgctcga cgttgtgggt ttcaaatagc gggcgttcgc ctttgaacaa
     4021 ttctatcctg cccaatgcgc cgtggacgta ttgttcggca aaacgcgtca tgcggccgtg
     4081 gtttacggtg gaatcgacga ggattttttg cgtgtcgcag ccgaccatat cgcgcaacac
     4141 gcgcaaactc aagggcaaat cctgataaag cagggtttcc ggcggccgga ttttcgcctg
     4201 ttcttggatg tgttcccaca ctttggtcag gtagtcgatg tcggactgga gctgttcgtc
     4261 ggtggcgttt tcggcgttgg tgcggatgat gtagccccgg caggcatttt ccggcaggag
     4321 cttgtcgagg cgttcgcgca ggctgctgcg ttcggcatcg tcttcgatgc gttgggacac
     4381 gccgatgtgg tcttcttgcg gaagatggac gaggaaacgc cccgccagcg agatttgggt
     4441 ggaaagccgc gcgcctttgg tgttgatcgg gtctttgatg acctgcacca aaacagactg
     4501 cccttcaaac agcatatgtt cgatgcgctg ggtttcttcg gggttgcggc gttgttcgag
     4561 gacatcgacg atgtgtaaaa acgccgcgcg ttccaagtcg atgtcgataa acgcgctctg
     4621 catcccaggc agcacgcggc gcaccacgcc caaatagata ttgccgacta ggctgtgttc
     4681 gctgttgcgc tcgatgtgca gctcgcagat attgttttcc tccaacaccg ctacgcgcgt
     4741 ttcctgcggc gtgatgttga ccaatatcgt ttcgggcggg cgcgcgatgt ctttggggat
     4801 ggggagtcct gacaacatgg tttttcctga aaatgtaata aaaatatttt gcatccgttc
     4861 cgccgcgcag cgcgggtgca aaaatatttt tcacaatgtc tatcatactt taaaaaagaa
     4921 actttgacac attccgcaca tgccgtttga acgtgcatct gttccgcact tgccaaacag
     4981 gggaaatgcc cctatattga ttatcattgc aaaactttcg gaaacccaat atgcagaccg
     5041 ttaccatgta cacaggtccg ttttgtccct actgcgcgat ggcgaaaagg ctgctgcacg
     5101 cggcaggtgt cggacatatc gacgaaatcc gtgtcgatgc aagccccgaa gcctttgccg
     5161 aaatgcagca gctttcggga cagcgcagcg tgccgcagat tttcatcggc gaaacgcacg
     5221 tcggcggatt taccgacctc taccgcctcc agcaggaagg cgggctggac ggactgctga
     5281 acccttaacc cccaactagg aaaacaaaat gagcgaagaa ctgcaacccg tattcagcat
     5341 cgagcgactg tatgtcaaag acttgtcttt ggaagtgccg cacgcgccgc aaatcttttt
     5401 ggaacagggc gagcccgaag tggatatgcg cgtttccacc ggcagccaaa agctggaaga
     5461 cggctactac aacgtggatg taaccgttac cgtaaccgcc aaattggata acgagcgcac
     5521 gatgtttttg aacgaagtaa cccaaagcgg tattttccgt ttggaaaaca tccccgaaga
     5581 agatgtgcag ctgctgctgg gcgtggcgtg tccgaacatc ctcttccctt acgcgcgcga
     5641 agccgtttcc ggtacggtaa cacgtgccgg cttcccgccc gtcctgctcg cgccgattaa
     5701 ttttgaggcg atttaccaac aacagcagga agccgaagcc gccggggctt gattcctgcc
     5761 tgccgatgcc gtctgaatcc gtttcagacg gtatttttgt tttcggataa aataggtgcg
     5821 ttcaaaggaa tctgcctatg atgtcgcccg aaacccagaa acagctcaaa atcaccgatg
     5881 tttccgccaa gaagctcgac aaactcaacc tccataccgc gtgggatttg gtgttgcacc
     5941 tgccgctgcg ttacgaggac gagacgcaca ttatgccgat taaggacgcg ccgattggcg
     6001 tgccgtgcca ggtcgagggc gaggttatcc atcaggaagt aacgttcaaa ccgcgcaagc
     6061 agttgattgt ccaaatcgcc gacggttccg gcagcgtcct ttttctgcgc ttcatccact
     6121 tttacgccag ccatcagaaa cagacggcgg tcggcaaacg catccgcgcc gtgggcgaaa
     6181 tcaaacacgg cttttacggc gacgagatga ttcatcccaa aatccgcgat gccgagggcg
     6241 gcggtttggc ggaaagcctc acgccggttt acccgaccgt aaacggtttg aaccagccca
     6301 ctttgcgccg tattattcag acggcgttgg acgttacgcc gctgcacgac acgctgcccg
     6361 atgccctgct gtgccgtctg aagctgccac acctcgccga aagcctgcgt cttttgcatt
     6421 cgccgccgcc gagtttcacg attcatcagc tttcagacgg cacgctgcct gcatggcaac
     6481 ggctcaaatt cgatgaactt ttggcgcaac agctttcgat gcgcttggcg cgacagaagc
     6541 gtatcggcgg cacggcggcg gcattgggcg gcgacggcac attgacccaa gccctgcgcc
     6601 aagccctgcc gtttgccctg accgatgcgc aagaaaaagt tgtttccgaa atctgccgcg
     6661 atatggcgca aacctacccg atgcaccgcc tgctgcaggg cgatgtcggc agcggcaaaa
     6721 ccattgtcgc cgccttgtcc gcgctgaccg ccatcgaatc cggtgcgcag gtggctgtaa
     6781 tggcgcccac tgaaatcctt gccgaacaac attttattaa atttaaacaa tggctcgaac
     6841 ctttgggcat tgaagttgtc cgcctttttg gcagtttgcg taaaaaagcc aaagacgaag
     6901 ccaaagccaa actcgccgac ggcagcgtca aaatcgccgt cggcacgcac gccctgtttt
     6961 cagacggcgt ggcgtttcac aatttgggct tgaccattgt ggacgaacag caccgtttcg
     7021 gcgttgccca acgcctcgcc ctcaaaaaca aagggcgcga agtccatcag ctgatgatgt
     7081 ccgccacgcc catcccgcgc acgcttgcga tgagtttttt cgccgatttg gacgtgtccg
     7141 tcatcgacga attgccgccc gggcgcacac cgattaaaac gcgcctcgtc aacaacgtcc
     7201 gccgcgccga agtcgaaggc ttcgtcctcg gcacttgccg aaaagggcgg caggcgtatt
     7261 gggtctgccc attgattgaa gagagcgaaa ccctgcaact gcaaactgct accgaaaccc
     7321 tagagcagct tcagacggcc ttacccgaac tcaacatcgg cttggtacac gggcgcatga
     7381 aagccgccga aaaagccgaa gtcatggctc agtttgccgc aggccgtctg aacgtcttgg
     7441 tcgccaccac cgtcatcgaa gtcggcgtag atgtgcccaa cgccgccctg atggtgatcg
     7501 aacacgccga gcgcatgggc ttggcgcagc tgcaccaatt acgcggtcgg gtagggcgcg
     7561 gcgcggcaga aagcgtgtgc gttctcctgt ttgccgagcc attgagcgaa ctcgccaaag
     7621 cgcggttgaa agtcatctac gaacacaccg acggctttga aatcgcccgc caagacctca
     7681 acatccgcgg ccccggcgaa tttctcggcg cgcgtcaaag cggcgtgcct atgctgcgtt
     7741 tcgccaagct cgaagaagac ttacaccttt tggaacaagc gcgcgaaatc gccccgatac
     7801 tgattgagca aaaccccgaa atcgtcgaag cgcatttggc aagatggctt tccggcaggg
     7861 aagggtattt gggcgtgtga gcaaaatgcc gtctgaaata ttagaaaaaa aagtgtaacg
     7921 gaaatctga
//
LOCUS       DAXIFD010000094         7794 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.094, whole genome shotgun sequence.
ACCESSION   DAXIFD010000094 DAXIFD010000000
VERSION     DAXIFD010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.094"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(159..2948)
                     /gene="ileS"
                     /locus_tag="ACFOCN_001400"
     CDS             complement(159..2948)
                     /gene="ileS"
                     /locus_tag="ACFOCN_001400"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HFC6970538.1"
                     /translation="MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREI
                     AKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPI
                     EVMVEKLHGKDMPKARFRELCREYAAEQVACQKKDFIRLGVLGDWDKPYLTMDFKTEA
                     DTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKVSPAIDVGYPFKDTAA
                     LAAAFGLAGIEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPKGKLVLAKDLAE
                     DALKRYGFSDGIAILAETTGDKLENLHMNHPFLERDIPMLNGDHVTTDAGTGLVHTAP
                     AHGLEDYAVCNKYGIELYNPVNAEGKYISETPRVAGMSVWEANPVILQWLEETGNLLA
                     SSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGADGKTLRDKAIKAVDDTEFFPSWG
                     RARLEAMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVAQRIEEKGIE
                     AWFSLDKGELLSAEDCEHYDKLSDTMDVWFDSGSTHYSVVKQREELDWPADLYLEGSD
                     QHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDQNGRKMSKSIGNVVAPQEVYNEFG
                     ADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFNPIEDAVQQA
                     DMVEIDRYAVVLARQLQERLAGDYYPRYTFHFAVKDIVSFCSEDLGAFYLDILKDRLY
                     TTKADSRARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEF
                     PTINEKAEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEMAGYL
                     NALGEELRFALLVSKAEVKVGSELAVAAKASDGEKCERCWHYTRDVGAVAGYETVCKR
                     CAENVGREGETRHYA"
     gene            complement(3089..4009)
                     /gene="ribF"
                     /locus_tag="ACFOCN_001401"
     CDS             complement(3089..4009)
                     /gene="ribF"
                     /locus_tag="ACFOCN_001401"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HFC6970539.1"
                     /translation="MRIRLGRHNAPDFPHGAAVTIGNFDGVHLGHKHILQKLRLEADT
                     RGLPVVTVVFEPQPKEFFALRTGRMPPCRISPLRTKLELLEGTGCVDAVWVLRFDQNF
                     SEISAQGFIDRLLRQTLNTRYLLVGDDFRFGAGREGCFELLAQQPDMQTERTPSVIVE
                     DIRTSSTAVRQALSDGNLAYAKKLLGHDYVLSGRVVHGRKLGRTLNAPTANIRLPRHR
                     YALGGVFVVEADGAFGTRRGVASFGFNPTVDSDCFQKLEVHLFDFQGDLYGQRLNVRF
                     LHKLRDEEKFDGMEELKRQIEADMEAAKCW"
     gene            complement(4536..5831)
                     /gene="tyrS"
                     /locus_tag="ACFOCN_001402"
     CDS             complement(4536..5831)
                     /gene="tyrS"
                     /locus_tag="ACFOCN_001402"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HFC6970540.1"
                     /translation="MSVIQDLQSRGLIAQTTDIEALDALLNEQKISLYCGFDPTADSL
                     HIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVKSIR
                     SQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRD
                     GAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLYQKQVFG
                     LTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSI
                     EEIDAIEAKDKASGSKPEAQRILAEEMTRLIHGEEALAAAQRISESLFAEDQSSLTES
                     DFEQLALDGLPAFEVSDGINVVEALVKTGLASSNKEARGFVNSKAVLLNGKPAEANNP
                     NHAAERPDDACLLNGEHKRFGKYTILRRGKRNHALLVWK"
     gene            complement(5894..7770)
                     /locus_tag="ACFOCN_001403"
                     /pseudo
     CDS             complement(5894..7770)
                     /locus_tag="ACFOCN_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259993.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
BASE COUNT         1732 a         1993 c         2218 g         1851 t
ORIGIN      
        1 attctagatt cccacttccg tgggaatgac ggttcagttg cattccgaca acaccgcaat
       61 cttgaaaccc ctccgccgtt ataaagacaa attgcggcac aaaaaatgcc gtctgaaatg
      121 ctgttcggcg gtttcagacg gcatttgctc aaactttatc aggcgtaatg gcgcgtttcg
      181 ccttctctgc cgacattctc tgcacagcgt ttgcagacgg tttcatagcc tgcaaccgcg
      241 cccacatcgc gggtgtagtg ccagcagcgt tcgcattttt caccatcact ggctttagcg
      301 gcaacggcaa gttcgctgcc tactttcact tctgctttag acaccagcaa ggcaaagcgc
      361 aattcttcgc ccaaagcgtt caggtagccg gccatttctt ccggcgcagt gatttcggct
      421 tcggcttgca aggacgaacc gacggttttg tcggcgcgca aaggctcgat ggcggcggtt
      481 accgcttcgc gggcttcgcg gattgccgtc cattttttca ccagttcggc ttcggctttt
      541 tcgttgatgg tcgggaactc gtgccaggtg tggaagagga cgctgtcttc ttcgccgccg
      601 ccgatgatgt cccacgcttc ttcgccggta aagcacaaaa tcggcgcaat caagagaacc
      661 aaactgcgcg tgatgtggta cagggcggtt tgcgcgctgc ggcgggcgcg gctgtcggct
      721 ttggtggtgt agaggcggtc tttcaggata tcgaggtaga acgcgcccaa gtcttccgag
      781 cagaaagaaa caatgtcttt tacagcaaag tggaaggtat agcgcggata gtaatcgcct
      841 gccagacgct cttgcagctg acgtgccaat accacggcgt agcggtcgat ttccaccatg
      901 tctgcctgtt gcacggcatc ttcaatagga ttgaagtcgc tgaggttggc aaacaggaag
      961 ctcaaggtgt tgcggatacg gcggtagctt tcggttacgc gcttgaggat ttctttggaa
     1021 atcgccaatt cgccgctgta atcggtggat gccgcccaca ggcgcaggat gtccgcgccg
     1081 aactcgttat acacttcttg cggcgcgacg acgttgccga tggatttcga cattttgcgc
     1141 ccgttttgat ccaccacgaa accatgggtc agcagctgtt tgtacggcgc gcgacccatt
     1201 gatgaggcgc agccggtcag catggacgac tgaaaccagc cccggtgttg atcgctgcct
     1261 tcgaggtaca agtcagcagg ccagtccaat tcttcgcgct gtttcacaac ggaataatgg
     1321 gtcgaaccgg agtcgaacca tacgtccatc gtgtcggaga gtttgtcgta atgttcgcaa
     1381 tcttccgcgc tcaacaattc gcccttatcg agggagaacc aagcctcgat gcctttttct
     1441 tcgatgcgtt gcgcgacttt ttccaaaagt tcggcagagt tcggatgcag ctcgcccgtt
     1501 tctttgtgaa caaagaaagt catcggcgtg ccccaatagc gttggcgcga aaccacccag
     1561 tcggggcggc cttcaatcat ggcttccaaa cgcgcacgac cccatgatgg gaaaaattca
     1621 gtgtcatcaa cggctttgat ggctttatcg cgcagggttt taccatcggc acctgcttta
     1681 tccataccga caaaccattg gccggtcgca cggtaaatca acggcgtttt gtgacgccag
     1741 cagtgcgcgt agctgtgttc gattttgctg cttgccaaga ggttgccggt ttcttccaac
     1801 cattgcagga taacgggatt ggcctcccaa acgctcatgc cggcaacgcg cggcgtttca
     1861 ctgatgtatt tgccttcggc gttgacgggg ttgtaaagct cgatgccgta tttattgcag
     1921 acggcgtagt cttccaaacc atgagcaggc gcagtatgca ccaaaccggt accggcgtcg
     1981 gtggtaacgt ggtcgccgtt gagcatggga atatcgcgtt cgaggaacgg atgattcatg
     2041 tgcaggtttt ccagcttgtc gccggtggtt tcggcaagaa tagcaatgcc gtctgaaaaa
     2101 ccgtaacgtt tgagcgcgtc ttctgccaaa tctttcgcca gcaccaattt gcctttgggc
     2161 gtatcgatta attgatacac cacgtccgca ccggcagaca cggcttggct cgctggcagc
     2221 gtccaaggcg tggtcgtcca gatgacggca aacgctttgc cctcgatgcc tgccaaaccg
     2281 aatgcagcgg caagcgcagc ggtgtcttta aacggatagc ccacgtcaat cgcaggcgat
     2341 actttgtctt tgtattccac ttcggcttcg gccaatgaag agccgcagtc caagcagaac
     2401 tgaaccggtt tcgcgccgcg gtagagatag ccggatttgt agatttcgcc gagcatacgc
     2461 acggtatcgg cttcggtttt aaaatccatg gtcaggtagg gcttgtccca gtcgcccaac
     2521 acgcccagac ggatgaagtc ttttttctgg caggcaactt gttcggcggc atattcgcgg
     2581 cacaattcgc ggaaacgcgc tttgggcatg tctttgccgt gcagcttttc taccatcact
     2641 tcgataggca aaccgtgaca gtcccaaccc ggcacataag gcgcgtcaaa accggcttgg
     2701 gttttgctgc ggataatgat gtctttgaga attttgttga cggcgtgacc gatgtggatg
     2761 tcgccgttgg catacggcgg gccgtcgtgc aggatgaact tcggacgacc tttggcgatt
     2821 tcgcgcagtt tttggtagcg tttttgctcg taccagcttt tcagccatgc aggctcgcgc
     2881 ttggcaagat tgccgcgcat cggaaacggg ctttcgagca ggtttacggt tttgctgtaa
     2941 tcggtcattt tttaatctct attgttacaa tatttcggtt cagacggcat tgcgcctcaa
     3001 acagtatttc acaacgggaa acccctatgc cgtctgaaca gttaaaaggt tgattgtagc
     3061 ccaatcggat ggtttgtata aggtttttct accaacactt tgcggcttcc atatcggctt
     3121 caatctgcct tttcagttct tccataccgt caaacttttc ctcatcgcgc agtttgtgca
     3181 ggaagcggac gttcaaccgt tgtccgtaca aatcgccttg aaagtcgaac aggtggactt
     3241 ccagcttttg aaaacagtcg ctatcaacgg tgggattgaa gccgaagctc gccacgccgc
     3301 gccgcgtgcc gaacgcgccg tccgcttcga cgacgaacac gccgccgagt gcataacggt
     3361 ggcggggcag gcggatgttg gcagtcgggg cgtttaaggt gcgtccgagt tttctgccgt
     3421 gcaccaccct gccgctcaag acgtagtcgt gtcccaaaag ttttttcgca taggcaaggt
     3481 tgccgtctga aagggcttgt cgcacggcgg tactgctggt gcggatgtct tcgacgatga
     3541 cggaaggcgt acgctcggtc tgcatatcgg gctgttgtgc caaaagttca aaacagcctt
     3601 cccgccccgc accgaaacgg aaatcgtcgc cgacgagcaa ataacgcgta ttcaaggttt
     3661 gacgcagcag gcggtcgata aacccttgcg cggatatttc ggaaaaattt tgatcgaaac
     3721 gcaaaaccca aacggcatcg acacagcctg tgccttccaa taattcgagc ttggtgcgca
     3781 gggggctgat ccgacacggt ggcatcctgc cggtgcggag tgcgaaaaat tctttgggtt
     3841 ggggttcgaa aacgacggtc acgacgggta atccgcgcgt atcggcttcg aggcggagtt
     3901 tttggaggat gtgtttgtgt ccgaggtgta cgccgtcaaa attgcctatg gttacggcgg
     3961 ccccgtgcgg aaagtcgggc gcgttgtgcc gccccagcct gattctcatt gttatgttcg
     4021 ggtatgtggt gaaacaggcg gtcattgtaa acggtattgc ggtttataga cagtgtgccg
     4081 cccgttacgc ccgcccgacg cgggaaaagt aggcaaattt cccgcagccg aacgcgccaa
     4141 acgcataaag cgcgcagcag gcgcggtgct atgtgttgaa acatcgcccc aaacctgatg
     4201 caacatcagt gaaaatcgtt cttttttaac caggtaaacc gagacaagca accctccgcc
     4261 gtcattcccg cgcaggcggg aatccggacc tgtccgcaca gaaacttatc ggataaaaac
     4321 agttgctcaa accccgagat tctagattcc cactttcgtg ggaatgacgg ttcagttgcg
     4381 ttccgacaac accgtaatct tgaaactcgt cattcccgct caggcgggaa tctagaacgt
     4441 ggaatctaag aaaccgtttt gcccgataag tttccgtgcg gacaggtccg gattcccgcc
     4501 tgcgcgggaa tgacggcatt tctgcggcaa tcggattatt tccaaaccaa aagcgcgtgg
     4561 ttgcgtttgc cgcgccgaag gatggtgtat ttgccgaaac gtttgtgttc gccgttcagc
     4621 aggcaggcat cgtcggggcg ttcggcggcg tggttggggt tgttggcttc ggcaggtttg
     4681 ccgttgagca aaaccgcttt gctgttcaca aagccgcgcg cttctttatt ggaggatgcc
     4741 aaaccggttt tgaccaaggc ttcgacgaca ttgatgccgt ctgaaacttc aaatgcaggc
     4801 aggccgtcga gggcgagctg ctcgaagtcg ctttcggtca ggctgctttg gtcttcggca
     4861 aacaggcttt cggaaatgcg ctgcgcggcg gcaagggctt cttcgccgtg aatcaggcgg
     4921 gtcatttctt cggcgaggat gcgttgcgct tcgggcttgc tgccgctggc tttatctttc
     4981 gcttcgatag cgtcgatttc ttcgatggac aggaaggtaa agtatttcag gaatttatac
     5041 acatcggcat cggcgacttt cagccagaat tggtagaact gatagggcga ggtttttttc
     5101 gcgttcagcc acaccgcgcc gccttcggtt ttgccgaatt tggtgccgtc tgatttggta
     5161 accaaaggca gagtcagtcc gaacacttgt ttttggtaca ggcggcgggt caggtcgata
     5221 ccggcagtga tgttacccca ttggtcggag ccgccgattt ccaaaaccgc gccgtggcgt
     5281 ttgttcaact cggcgaagtc gtaaccttgc agcagggaat aggcgaactc ggtgaaggaa
     5341 atgcctgcgc cgtcgcggtc gatgcgctgt ttgacggatt ctttgttcag catggcgttg
     5401 acggagaaat gcttgccgat gtcgcgcagg aagtcgaggc agttcatttt gccgaaccag
     5461 tcggcgttgt tcgccataat ggcggcgttt ccgccttcaa agctcaagaa aggggttaat
     5521 tggctgcgga tgcttttcac ccagccggca acggtttcgg cggaattcaa gctgcgttcg
     5581 gcggctttga agctggggtc gccgatcata ccggtcgcac cgcccaccag tgcaatcggc
     5641 gtatgccccg cctgttggaa gcggcgcaat gccaatacgg gcagcaggtg tccgatgtgc
     5701 aggctgtcgg cggtcgggtc gaagccgcaa taaagggaaa ttttttgttc gttcaacaaa
     5761 gcgtctaagg cttcgatgtc ggtggtttgc gcgattaggc cgcgcgattg caggtcttgg
     5821 atgacgctca tcggtctctt tcaaaaaaaa ttagcggttt tgcaaaccgc cgattgtaac
     5881 aaatttaagc gaatcaatgg ttatggcgcg tatcgagaaa ccgttgtttt tcggaaaaac
     5941 gcttcgccaa ttccgtgccg ccgtaagggt tgatgtggtc tttgtccgag taaaccggca
     6001 atccgccgat ttggaaattt gcggggatat aggcggcggc atcaataata tagacgttgg
     6061 ggtatttggc tgccaattcc ctgatgcgtg cattggcttt cagagtgctt tcgtcgtccg
     6121 ggcgcagggt ttggcggtaa cccggtatgc gtgaagacaa gatataggcg cgttgtacgt
     6181 tgtaagacga ggcaaggttg tccgccatca ggtaaacggc ttgtttttcg gatgagagtt
     6241 tgtgcagcat acggtcgaat ttttggaaaa aaccggcatc gtaggcaagg gagcggctgt
     6301 tttcgggcat ttggctgccc cagcgcatcg ccaaaaccac ttttgaatac aggggcaggt
     6361 gttcttcggc atagcggtaa acggcgcggc aggcggccca gttttggaac acacgggacg
     6421 cgtagccttc cacataggcg caagcgtcgg cggaaaccat agtggcggac catttttctt
     6481 ttttgcccac ggcatcgaag aatgttttgt aatggtcggc gtgggagtcg cccaaaacca
     6541 gcagctccgg ctgtttttcc gtatcccccc acaggcattg tttgccggta ttgttgtggc
     6601 aggaggtgtt ggaacgcgtc agccccaagc ggtcgtattg cgccataaac ggcagcctca
     6661 tcgcgaaaaa cgagcccgcc cccaaaatga gcataggcaa ggcataaatc cataaaacgg
     6721 attgtgcgaa cgaacctttc cattttttaa acggcttttc gatgcagtga taagaaatca
     6781 gggaaagcag caatatcagg acgattgctg ccgctgttga ataaggcggc aggttgtccg
     6841 ggccgatata gcgcataaag gccaatatcg gccaatgcca cagataaagc gaataggaaa
     6901 tcaaaccggc ggcaacagtg attttccatt ggaaaaattt tttaagcggg tgttcgtaat
     6961 gattgaaata aatcagcgcg gcaacagcca gacagggaat caaagcggcg ggtcccggga
     7021 aataggcggt ttgtttcgaa taggcaaaca ggcaggcgga cagtatgcac gcggaaaaca
     7081 atgcgccggc ggcggcacag catctgccaa cggcgagatt ccgctgttgc cggtaccgca
     7141 tccacacggc ggtcagcgat ccgaccagca tttcgcaggc gcgcaggtgg ggcaggtaat
     7201 atttatcgaa cgcggaaggc ataaaggaag cggcaaggct taaggcgcac aatgcggcga
     7261 ggaagccgaa ctgtacgcgc gggcttttgc gggcgacaag cagcagcaat atcggaaaga
     7321 caaagtaaaa ttgttcttcg accgacaaag accaaatgtg cagcaagggc ttttcttcct
     7381 gcgcgggatc gaaataatcc ttcccccttg caaaatacag gttggaggcg aaacccaagg
     7441 cggtcagcgc ggatttccac aaaagaaaga aatcatcttt ggtgaataaa aagaagccgc
     7501 ctatcagcgt tgccgccaat acggcgaaaa atgcgggcaa aatccgtttg atgcggcgga
     7561 tataaaatgc cttcagggaa aacctccccc ccccgacatt tcgcggtgaa gaatcatcgt
     7621 catcaaaaag cctgaaatca cgaaaaatat atcgacaccg agaaacccgc ccggcagcca
     7681 atttttttcg atatggaaca cgatgacgga caagacggcg gcggcgcgca atgtgtcgat
     7741 gtccgggcgg tagggtaagg cttggctcat aatgttttta tagtggatta aatt
//
LOCUS       DAXIFD010000095         7726 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.095, whole genome shotgun sequence.
ACCESSION   DAXIFD010000095 DAXIFD010000000
VERSION     DAXIFD010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7726
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.095"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..584
                     /locus_tag="ACFOCN_001404"
     CDS             <1..584
                     /locus_tag="ACFOCN_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6970541.1"
                     /translation="KGFWQEIVYYLKTYKLLAIGSVVGSIFGVKLLLILPVSWLLLLM
                     AIITLYYSVNGILNVCAKAKNIQVVANNKNMVLFGFLAGIIGGSTNAMSPILLIFLLS
                     ETENKNRIVKSSNLCYLLAKIVQIYMLRDQYWLLNKSEYGLIFLLSVLSVIGLYVGIR
                     LRTKISPNFFKMLIFIVLLVLALKIGHSGLIKL"
     gene            784..1161
                     /gene="acpS"
                     /locus_tag="ACFOCN_001405"
     CDS             784..1161
                     /gene="acpS"
                     /locus_tag="ACFOCN_001405"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HFC6970542.1"
                     /translation="MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGK
                     PVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQG
                     ISRVSLSMSDEEDTVLAFVVAEK"
     gene            1243..2052
                     /locus_tag="ACFOCN_001406"
     CDS             1243..2052
                     /locus_tag="ACFOCN_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6970543.1"
                     /translation="MIQDTRPLIRVVAGILLDSDGNYLLSSRPEGKPYAGYWEFAGGK
                     VEAGETDFQALQREFEEELGIRILAATPWLTKIHSYEHARVCLKFLWVNPGQWTGEPQ
                     SREGQEWSWQKAGDFTVAPMLPANGALLRSLSVPRRLYGSLKTGLHGENSMGAYRVLP
                     LGSAEGSGANVLMEAAQWQDRPEHADSVWMMVQTREQWRQAQEKGADVVVWRVCNDVQ
                     AQEAAEALRQGVSVPLVLAANGQTVARYGKLWLGLGAHVVVRDETIGKNHE"
     gene            2045..2467
                     /locus_tag="ACFOCN_001407"
     CDS             2045..2467
                     /locus_tag="ACFOCN_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970544.1"
                     /translation="MNKNRKLLLAALLLIAFAAVKLVLLQWWQAQQPQAVAAQCDLTE
                     GCTLPDGSRVRAAAVSTKKPFDIYIEHAPAGTEQVSISFSMKNMDMGFNRYMFERQPS
                     GTWQAVRIRLPICVEGRRDFTADITIGSRTFQTAFTAE"
     gene            2516..3658
                     /locus_tag="ACFOCN_001408"
     CDS             2516..3658
                     /locus_tag="ACFOCN_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HFC6970545.1"
                     /translation="MNTLYTLFATCPRGLETVLSQELESLGCTDVQVFDGGVSCRGGL
                     EQVYAANLHSRTAGRILLRLTKGTYRTERDIYKLAKNINWFNWFTLQQTFKVKIEAKR
                     ANVKSLQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLDERNVEIFIDTSGE
                     ALFKRGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRA
                     PGMMRRFGFEKLQNFDKTLWSDLRRRAEAQVKPAFAPISGSDSDRRIIQTALANARSA
                     GVDDIVSFSVADAQSVRPNGVGGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKHYAG
                     WQVGMFTGDREMPKFMRLSPKRKIPLYNGNLDCRLFLIDMVQGSNR"
     gene            complement(3959..4777)
                     /locus_tag="ACFOCN_001409"
     CDS             complement(3959..4777)
                     /locus_tag="ACFOCN_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6970546.1"
                     /translation="MKGMDKLRYQQDFLNIRPIFTAGEQEYLTGLSDRLPLSVLTGSV
                     RNIEEIGIDFVYSSAKLEGNTYNQYDTQALLKLGQTAGGKLYSDAVMLINLRESYRHL
                     LSGLDSPEPFDWLDFLKTTHSLISENLLEKGSGGVVRRDSVTISGTDYTPLSNPQSLD
                     TELKWLLQEAPKIENPFDRAVYLHNNLAYLQYFKDCNKRTARNCMTLSLMRSGFFPCV
                     FSPDSYPAYAEAVVAYYETGDYGLFKKYFISAYENTVNKYGPQPDMDISRNFSL"
     gene            complement(4844..6094)
                     /locus_tag="ACFOCN_001410"
     CDS             complement(4844..6094)
                     /locus_tag="ACFOCN_001410"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6970547.1"
                     /translation="MTKLTRRQIIRRTAGTLFALSPIASAVAKTVRAPQFTAVRIWPS
                     HTYTRLTLESTTALKYQHFTLDNPGRLVVDIQNANINTVLHGLSQKVMADDPFIRNIR
                     AGQNTPDTVRLVIDLKQPSYAQVFSLPPVGGFKNRLVVDLYPQGMDPDDPMMALLNGS
                     LNKTRRGSPEADLAQNTPAQTERGKNGRRPVIMIDPGHGGEDPGAVSPGGLQEKHVVL
                     SIARETKKQLEALGYNVFMTRNEDVFIPLGVRVAKGRARRADVFVSIHADAFTSPSAR
                     GTGVYMLNTKGATSSAAKFLEQTQNNADAVGGVPTSGNRNVDTALLDMTQTATLRDSR
                     KLGKLVLEELGRLNHLHKGRVDEANFAVLRAPDMPSILVETAFLSNPAEEKLLGSESF
                     RRQCAQSIASGVQRYINTSVLKRG"
     gene            complement(6091..6552)
                     /gene="tsaE"
                     /locus_tag="ACFOCN_001411"
     CDS             complement(6091..6552)
                     /gene="tsaE"
                     /locus_tag="ACFOCN_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HFC6970548.1"
                     /translation="MSDFPPVSRFLADEAATLDLGAAWSSRLNAPLVIYLEGDLGAGK
                     TTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEEWEDAGLDELF
                     AANSVCLIEWPQQGGEFTPPADITATLTHDGGGRKCLLTAHTERGRESLPL"
     gene            6742..7554
                     /gene="murI"
                     /locus_tag="ACFOCN_001412"
     CDS             6742..7554
                     /gene="murI"
                     /locus_tag="ACFOCN_001412"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HFC6970549.1"
                     /translation="MENIGRQRPIGVFDSGIGGLTNVRALMERLPMENIIYFGDTARV
                     PYGTKSKATIENFSMQIVDFLLEHDVKAMVIACNTIAAVAGQKIRQKTGNMPVLDVIS
                     AGAKAALATTRNNKIGIIATNTTVNSNAYARAIHRNNPDTLVRTQAAPLLVPLVEEGW
                     LEHEVTRLTVCEYLKPLLADGIDTLVLGCTHFPLLKPLIGREAHNVALVDSAITTAEE
                     TARVLAQEGLLNTDNNNPDYRFYVSDIPLKFRTIGERFLGRTMEQIEMVSLG"
BASE COUNT         1799 a         1974 c         2143 g         1810 t
ORIGIN      
        1 aaaaaggttt ttggcaagag attgtttatt atttaaaaac ctataaattg cttgctatcg
       61 gcagcgtcgt tggcagcatt tttggggtga agttgctttt gatacttcca gtgtcttggc
      121 tgcttttact gatggcaatc attacattgt attattctgt caatggtatt ttaaatgtat
      181 gtgcaaaagc aaaaaatatt caagtagttg ccaataataa gaatatggtt ctttttgggt
      241 ttttggcagg catcatcggc ggttcaacca atgccatgtc tcccatattg ttaatatttt
      301 tgcttagcga aacagaaaat aaaaatcgta tcgtaaaatc aagcaatcta tgctatcttt
      361 tggcgaaaat tgttcaaata tatatgctaa gagaccagta ttggttatta aataagagtg
      421 aatacggttt aatattttta ctgtccgtat tgtctgttat tggattgtat gttggaattc
      481 ggttaaggac taagattagc ccaaattttt ttaaaatgtt aatttttatt gttttattgg
      541 tattggctct gaaaatcggg cattcgggtt taatcaaact ttaattcatt attaaatgcc
      601 ttaactcctt attaaataat tggcacgatg ttttagaatt tcaaatgcaa aaggttacag
      661 tgaaaattgt taccgacaaa accccaaaag tggatattca cgccatttta acgccccaag
      721 aaattgacgg cattcatcat cacattcatc actacccgca accaagggcg aaggagcgca
      781 aatatgattt acggcatcgg cacagacatt gtttccctca agcgcatcat ccgcttaaac
      841 aaaaaattcg gacaggcgtt tgccgggcgc atcctcactc cggaagagct gcttgaattt
      901 ccgcaagcgg gcaaacccgt caactacctc gccaaacgct ttgccgccaa agaagccttc
      961 gccaaagccg tcggcacggg catacgcggc gcggtttcct tccgcaacat cggcatcggg
     1021 catgacgcat tgggcaagcc cgaatttttc tacggccccg ccctgtccaa atggctggag
     1081 gaacaaggca tcagccgcgt cagcctcagc atgagcgacg aagaagacac cgtattggcg
     1141 tttgtcgttg ccgaaaaata atgccgtctg aaatgcggca aacccgttga cggcattgct
     1201 cgtccctcat ttgcactccg accgaccaac cgcgtacccg ccatgattca agacacccga
     1261 ccccttatcc gcgtcgttgc cggcatcctg ctcgattcag acggcaacta cctgctcagc
     1321 tcgcgccccg aaggcaaacc ctatgccgga tattgggaat ttgccggcgg caaggtcgaa
     1381 gcgggcgaaa ccgacttcca agccttgcaa cgcgagtttg aagaagaact cggcatccgc
     1441 atccttgccg ccacgccttg gctgaccaaa atccattcct acgaacacgc ccgcgtctgc
     1501 ctgaaattcc tatgggtcaa ccccggccaa tggacgggcg aaccgcaatc ccgcgaaggg
     1561 caggaatggt cttggcagaa ggcgggtgat tttaccgttg cccccatgct gcccgccaac
     1621 ggcgcgcttt tgcgttcgct gtccgttccg cgccgtttgt acggcagcct gaaaacgggt
     1681 ttgcacgggg agaacagtat gggcgcgtac cgcgtcctgc ctttgggttc ggcagaggga
     1741 agcggtgcga acgttttgat ggaggcggcg caatggcagg acagacccga acacgccgac
     1801 agcgtgtgga tgatggtgca gacccgcgaa caatggcggc aggcgcagga aaagggcgcg
     1861 gatgttgtcg tgtggcgcgt gtgcaatgat gttcaggcac aagaggcggc agaagccctg
     1921 cggcagggcg tatccgtgcc gctcgtactt gcagcaaacg gacagacggt tgcacgttat
     1981 ggaaaactat ggctcggatt gggggcgcac gtggtggtaa gggatgaaac aatagggaag
     2041 aatcatgaat aaaaaccgta aattactgct tgccgcactg ctgctgattg cctttgccgc
     2101 cgtcaagctc gttttgttgc aatggtggca ggcgcagcag ccgcaagctg tggcggcgca
     2161 atgcgatttg accgagggtt gcacgctgcc ggacggaagc cgcgtccgcg ccgccgccgt
     2221 ttcaaccaaa aaaccgtttg atatttatat cgaacacgcg cccgccggca cggaacaggt
     2281 cagcatcagc ttcagtatga aaaatatgga tatgggtttc aaccgctata tgttcgagcg
     2341 gcaaccgtcg gggacttggc aggcagtacg catccgcctg cccatctgtg tcgaaggcag
     2401 gcgcgatttt acggcggaca ttacaatcgg cagtcggaca tttcagacgg catttaccgc
     2461 cgaataaacc tttcaatccg ccattgccgg aacatccgtc cggaaaggac acgttatgaa
     2521 tactttatat acacttttcg ccacctgccc gcgcggcttg gagaccgttt tatctcaaga
     2581 actcgaaagc ctcggctgta ccgatgtaca agtgtttgac ggcggcgttt cctgccgggg
     2641 cggattggaa caggtttacg ccgccaacct gcactcgcgt accgccggcc gcatcctgct
     2701 acgcctgacc aaaggcacat accgaaccga gcgcgacatt tacaaacttg ccaaaaacat
     2761 caactggttc aactggttta ccttgcagca gacgttcaaa gtcaaaatcg aggcaaagcg
     2821 tgccaacgtc aaaagcctcc aatttgtcgg actgaccgtc aaagatgccg tctgcgacgc
     2881 tttccgcgac atttacgacg cacgtccgag cgtggacaaa gccgcgcccg atgttcgcat
     2941 ccacgccttt ttggacgaac gcaatgtcga aatcttcatc gacacttcgg gcgaagccct
     3001 gttcaaacgc ggctaccgtc tcgataccgg cgaagccccg ctgcgcgaaa accttgccgc
     3061 cggattgctg ctctcggcag gctacgacgg cacgcagccg tttcaagacc cgttttgcgg
     3121 cagcggcacg attgctatcg aagccgcttg gattgccgcc cgccgcgcgc cgggtatgat
     3181 gcgccgtttc ggttttgaaa aactgcaaaa tttcgataaa acgctgtggt cggatttgcg
     3241 ccgccgtgcc gaagcgcagg ttaaaccggc ttttgcaccg atttcgggca gcgacagcga
     3301 ccgccgcatc attcagacgg cattggccaa cgcacgcagt gccggggtgg acgacatcgt
     3361 ttccttcagc gttgccgacg cgcaatccgt ccgtccgaac ggcgtgggcg gcattatggt
     3421 gtccaatccg ccctacggtg tgcgccttga ggaagtccgc gctttgcagg cactgtatcc
     3481 gcagttgggg acgtggttga aaaaacacta tgccggctgg caggtcggta tgtttaccgg
     3541 cgacagggaa atgcccaaat tcatgcgcct gtcgcccaag cggaaaattc cgctttataa
     3601 cggcaacctc gactgccgcc tgttcctgat tgatatggtg cagggatcga accgttgagg
     3661 aaagtgtaca aaaaagccgt ctgaaaaatg ttcagacggc tttttttaat atccggccga
     3721 tattatagtg gattaacaaa aatcaggaca aggcgacgaa gccgcagaca gtacaaatag
     3781 tacgtaaccg attcacttgg tgcttgagca ccttagagaa tcgttctctt tgagctaagg
     3841 cgaggcaacg ccgtactggt ttttgttaat tcactataac cgaaggtaag ggaggggtgt
     3901 gtccactgtg ccgccgcatt tgccgcgtgc ggaagatacg gataacaacc ccttggaatt
     3961 aaagggagaa gttgcgggaa atatccatat caggctgggg accgtactta tttacggtat
     4021 tttcgtatgc cgaaataaaa tatttcttga ataaaccgta atcgccggtt tcgtaatagg
     4081 ctacgacagc ctcggcatag gcgggataac tgtcggggga gaatacgcaa ggaaaaaaac
     4141 cggagcgcat cagcgacaag gtcatgcagt ttctggcagt acgtttattg caatctttaa
     4201 aatattgaag atacgccaaa ttattatgga gataaacggc gcggtcgaaa ggattttcta
     4261 ttttgggagc ttcttgaagc aaccatttta attccgtatc caaactttgc gggttagata
     4321 aaggggtgta gtctgtcccg cttatggtaa cgctgtcgcg gcggactacg ccgccggagc
     4381 ctttttccag taagttttcg gaaatcaggc tgtgggtggt ttttaagaaa tccaaccagt
     4441 caaacggctc ggggctgtcc aaaccggaca gcaggtgccg gtaactttcc ctcaggttga
     4501 ttaacattac ggcatccgaa tataacttcc cgcctgcggt ttgcccgagt ttaagcaatg
     4561 cctgcgtatc gtattgatta taagtgtttc cttccaattt ggcagaacta tatacaaaat
     4621 cgataccgat ttcttcaata ttacgcacgg agcccgttaa aacagataaa ggaagccgat
     4681 cggacaatcc ggtcaggtat tcttgttcgc cggctgtaaa aatggggcgg atatttaaaa
     4741 aatcctgttg gtatctcaat ttatccatac ctttcatcat aaaaacgcgg tttggggcgg
     4801 aagtaggttt atgcctgcct tcatccgact accgcctttt caatcaaccc cgcttcaata
     4861 cggatgtatt gatgtagcgt tggacacccg aggcaatgga ttgggcgcac tgccggcgga
     4921 aggattcgct gcccagcaac ttctcttcag cagggttgga caggaaggcg gtttcgacca
     4981 ggatagacgg catatcgggt gcgcgcaaaa cggcgaaatt ggcttcgtcc accctgcctt
     5041 tgtgcaagtg gttgagcctg cccaattctt caagcaccag tttgccgagt ttgcggctgt
     5101 cgcgcagcgt ggcggtttgg gtcatatcga gcagggcggt atcgacgttg cggttgccgc
     5161 tggtcggtac gccgccgacc gcgtcggcat tgttttgcgt ctgttccaag aatttggcgg
     5221 cggagctggt cgcgcctttg gtgttcagca tatagacccc cgttccgcgc gcggaggggc
     5281 tggtgaaagc gtcggcgtgg atggagacga atacgtccgc ccgccgtgct cgccctttgg
     5341 cgacacgcac gcccaatggg atgaacacgt cttcgttgcg cgtcataaag acgttgtaac
     5401 ccaaggcttc caattgtttt ttggtttcgc gggcgatgga gaggacgacg tgtttttcct
     5461 gcaaaccgcc cgggctgacg gcgccggggt cttcgccgcc gtgtccgggg tcgatcataa
     5521 tgacgggtct gcgcccgttt ttgccgcgtt cggtttgtgc gggagtgttt tgagcgaggt
     5581 cggcttcagg ggagccgcga cgggttttgt tcaggctgcc gttaagcagc gccatcatcg
     5641 gatcgtcggg atccatccct tgcggataga gatcgacgac gaggcggttt ttaaagccgc
     5701 cgacgggggg gagggaaaaa acttgcgcgt aggaaggctg tttcaaatcg atgacgaggc
     5761 ggacggtgtc gggcgtgttc tgaccggcgc gtatattgcg gataaagggg tcgtccgcca
     5821 taaccttctg agacagtccg tgcaatacgg tattgatgtt cgcgttttgt atgtcgacga
     5881 ccaacctgcc cgggttgtcg agcgtgaagt gttggtattt gagcgcggtt gtgctttcca
     5941 gcgtcaggcg ggtgtaggtg tgcgacggcc atatccgtac ggcggtaaac tgcggggcgc
     6001 gtaccgtttt ggcaacggcg gatgcgatgg ggcttagggc gaacagtgtg ccggcggtgc
     6061 ggcggatgat ttgtcttcgt gtcagtttgg tcatagcggc aggctttcgc gtcctcgttc
     6121 ggtatgggcg gtcagcaggc attttctgcc gccgccgtcg tgtgtcaatg ttgcggtgat
     6181 gtcggcgggc ggggtaaatt cgcctccctg ttgcggccat tcgatcaggc agacgctgtt
     6241 tgcggcaaac agttcgtcaa gccccgcgtc ttcccattct tcggggaacg agaagcggta
     6301 gaggtcgaaa tggtgcaggg tgaagcgttc cagcggataa gattcgacga tggcgtaggt
     6361 cgggcttttg actgcgccct gatgacccaa tccgcgcagg atgccgcgtg tcagcgtggt
     6421 tttgcccgca cccaaatccc cttcgagata aatgaccagc ggtgcgttta aacgggaaga
     6481 ccacgccgca cccaaatcga gtgtggcggc ttcgtcggca aggaatcggg aaacgggagg
     6541 aaaatcagac ataggggctt tacaactttt atgtggcgga tcggaggggc aggcggtcgg
     6601 caaaccgtgc gcccggcggc agcattgccg tacattataa cagccaaatc cgcatcctgc
     6661 tttcagacgg caacggctgt caagaaaaag cggcgcgtgt acaatacgcg gattgtatgt
     6721 ttaggacgga ttggaaaaag aatggaaaat atcggcaggc agcgacccat cggcgttttt
     6781 gactcgggaa tcggcggttt gaccaatgtg cgagcgctga tggaacggct gccgatggag
     6841 aacatcattt atttcggcga cacggcgcgc gtgccttacg ggacgaaatc taaggcgacc
     6901 atcgaaaatt tctcgatgca gattgtcgat tttttattgg aacacgatgt caaggcgatg
     6961 gttatcgcgt gcaatacgat tgcggcggtg gcggggcaga aaatccgtca aaaaaccggc
     7021 aatatgcccg ttttggacgt gatttccgcc ggcgcgaaag ccgcgctggc aacgacgcgc
     7081 aacaataaaa tcggcattat cgccaccaat acgacagtca acagcaacgc ctatgcgcgc
     7141 gccatccaca ggaacaaccc cgatacgctc gtccgcacgc aggccgcgcc gctgctcgtc
     7201 cctttggtgg aggaaggttg gttggaacat gaagttaccc gcctgaccgt atgcgaatac
     7261 ctcaaaccat tgcttgcgga cggcatcgat acgctggtgt tgggctgcac gcactttccc
     7321 ttgctcaaac ccttaatcgg cagggaggcg cacaatgtcg cactggtcga ttccgcgatt
     7381 acgactgccg aagaaaccgc acgcgtcctt gcgcaggagg gattactcaa taccgacaac
     7441 aacaatcccg actaccgttt ttatgtcagc gatattcctt tgaaattcag aaccatcggc
     7501 gagcgttttc tgggcaggac gatggagcag attgaaatgg tgtctttggg ttagcggcag
     7561 gtacggacgg aaaccgtccc cgtccgcgcc atccgcatac gcacccgcaa cgccctgccg
     7621 tattaaacgc cccgtcgccg caaatgccgt ctgaaaggct tcagacggca ttttttacac
     7681 aattcccacc gtttcccatc cttctcgata cactgtaatc tcgaaa
//
LOCUS       DAXIFD010000096         7479 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.096, whole genome shotgun sequence.
ACCESSION   DAXIFD010000096 DAXIFD010000000
VERSION     DAXIFD010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7479
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.096"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(16..771)
                     /locus_tag="ACFOCN_001413"
     CDS             complement(16..771)
                     /locus_tag="ACFOCN_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HFC6970550.1"
                     /translation="MKYVRLFFLGAALAGTQAAAAEMVQIEGGSYRPLYLKKDTGLIK
                     VKPFKLDKYPVTNAEFAEFVNSHPQWQKGRIGSKQAEPAYLKHWMKNGSRSYAPKAGE
                     LKQPVTNVSWFAANAYCAAQGKRLPTIDEWEFAGLASATQKNGSNEPGYNRTILDWYA
                     DGGRKGLHDVGKGRPNYWGVYDMHGLIWEWTEDFNSSLLSSGNANAQMFCSGASIGSS
                     DSSNYAAFLRYGIRTSLQSKYVLHNLGFRCTSR"
     gene            complement(896..2055)
                     /gene="nirK"
                     /locus_tag="ACFOCN_001414"
                     /pseudo
     CDS             complement(896..2055)
                     /gene="nirK"
                     /locus_tag="ACFOCN_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714409.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0050421 - nitrite reductase (NO-forming)
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper-containing nitrite reductase"
     gene            2429..4684
                     /locus_tag="ACFOCN_001415"
                     /pseudo
     CDS             2429..4684
                     /locus_tag="ACFOCN_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582176.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide reductase large subunit"
     gene            4863..5396
                     /locus_tag="ACFOCN_001416"
     CDS             4863..5396
                     /locus_tag="ACFOCN_001416"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HFC6970551.1"
                     /translation="MGIYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQYEAL
                     QKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANT
                     APLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERF
                     APSVTPEEIEADIRALL"
     gene            complement(5459..6643)
                     /locus_tag="ACFOCN_001417"
     CDS             complement(5459..6643)
                     /locus_tag="ACFOCN_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HFC6970552.1"
                     /translation="MTEPTSRRRFLKTCTAAAGAGLLQACGTSATSVPPLPSSHSVVK
                     ARTVPLQTPRRQSSDGNLLRVVASSGFAEDTNRVNTALTRLYNAGFTVTNQQAGSRRF
                     QRFAGTDAQRVADFQEVASGRVATPKVLMGLRGGYGAARILPHIDFASLGARMREHGT
                     LFFGFSDVCAVQLALLAKGNMMSFAGPMAYSDFGKPAPGAFTMDAFIKGATQNRLTVD
                     VPYIQRADVETEGILWGGNLSVLASLAGTPYMPDIDGGILFLEDVGEQPYRIERMLNT
                     LYLSGILKKQRAIVFGNFRMEKIRDVYDPSYDFSAVANHVSRTAKIPVLTGFPFGHIA
                     DKITFPLGAHARIRMNGNSGYSVAFEGYPTLDASALTLDTLLPPPDLPIFPESGVADI
                     SE"
     gene            complement(6683..7087)
                     /locus_tag="ACFOCN_001418"
     CDS             complement(6683..7087)
                     /locus_tag="ACFOCN_001418"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HFC6970553.1"
                     /translation="MTAQPCPICTAQDEDILLQTPKLRVIAVHNDSGSPAFCRVIWRK
                     HIAEMTDLSAAERGELMEMVYKVEAAMRQVFQPAKINLASLGNVVPHLHWHIIARFEN
                     DASFPAPIWANPVRKHGMTLPQDWTEQLKKLL"
BASE COUNT         1654 a         1826 c         2090 g         1909 t
ORIGIN      
        1 ctataattga aggggttatc ggcttgtgca acggaagccc aagttgtgca agacatattt
       61 ggattgcagg ctggtgcgga tgccgtagcg gaggaaggcg gcatagttgg acgagtcgct
      121 cgacccgata gacgcgccgc tgcaaaacat ttgcgcgttg gcattgccgg aagaaagcag
      181 gctgctgttg aaatcttccg tccattccca aatcagcccg tgcatatcat aaacgcccca
      241 gtagttcggg cggcctttgc cgacatcgtg caggcctttc cgtccgccgt cggcatacca
      301 atcgagaata gtgcggttgt agccgggttc gtttgagccg tttttctgcg tggcggaagc
      361 aagtccggca aattcccatt cgtcaatggt cggcaggcgt ttgccttgtg cggcgcaata
      421 ggcgttggcg gcaaaccagg aaacatttgt taccggttgt tttaattcgc ccgccttcgg
      481 cgcatagctg cggctgccgt ttttcatcca atgcttcagg taagcgggtt ctgcctgttt
      541 ggaaccgatc ctgccttttt gccattgggg gtggctgttg acaaattcgg caaactcggc
      601 attggtaacg ggatatttat ccagtttgaa cggtttgact ttaatcaggc cggtatcttt
      661 tttcagataa agcgggcggt agctgccgcc ttcgatttga accatttcgg cagccgccgc
      721 ttgagtgccg gcgagtgccg cgccgaggaa aaataaccgg acatacttca taaagcctcc
      781 tgacaggcgg ttaaaatcaa tcttccgaaa ggaaagattg gttgttaaaa aaccactgcc
      841 gtgcgtaatg aagtacagcg gcagtggttc gtcccgctaa tgacgggtat ccaatttaat
      901 aaacgctttt ttcggatgca gaggctgccg gggcagaagc tgcgggagcg gaagcagcag
      961 gagctgcacc gttaccggcg taagcggtat cactcaattt ttgagtcatg atttcagggt
     1021 tttccgcacc ctctactttc aattggccca acgcgccttt gttgaatgcg cggaagatgg
     1081 agtggtcgac caaagtgtag ctgcccggga tgtcgacttt gaattcgacg atggcggaac
     1141 cgccggcagg aacgatggtg ctttgtacgt tttcgttaat cagcttgccg ccttccacat
     1201 aaactttgtc gaagatttcg ccgatgacgt ggaaggaaga cactaggttc ggaccgccgt
     1261 taccgacgta catacgcacg gtttcgcctg ctttggcttt cagcgcgtta tcgccggcga
     1321 tagaacctac atgaccgttg aatacgacgt attcaggctg ttcggcaacg gctttgtcca
     1381 tatcgaacgg ttgcaggcct tgcgcgcctt ttttgccttt ggtgtagaag tcgccttgga
     1441 cgatgtagaa ctctttatcc actttcggca gaccttcttt aggctcgacc aaaatcagac
     1501 cgtacatacc gttggcgatg tgcataccga ccggcgcgac ggcgcagtgg tagatgtaca
     1561 gacccggttg cagggctttg aagctgaatg tggaagtgcg gcccggggcg gtaaaggttg
     1621 cggctgcacc gccgccctga ccggttgcgg cgtggaagtc gacgttatgg ggaacggtag
     1681 aagacgggtt gttggaaaat tccacttcaa ccgtatcgcc ttcgcgtacg cggatcatgc
     1741 gacccggaac gtcgccgtca aatgtccagt agcggtattc cacaccgtct tccatggtca
     1801 tggtttttcg acagtttcca tttttacgcg gactttggca ggatagtcgc ggtcgattgc
     1861 gggaggtact tcaggagcgt gggtggtaac tgcatcgata acgggcagtt cgcctgtcgg
     1921 cgtttcggcg gcggtttgtg cggcggaact tgcggcttct gcggaagcgg caggggcttg
     1981 cgcggcaggt tcgccgccgc aggcggctaa tgcgaataag gaagcaatca ttgcagctaa
     2041 ggcttggcgt ttcataatgt tttccttttg taagaaaagt agaggaattg gttaagaact
     2101 tggtgtgatt atgcgtttgc cccattgggg gcattttgat ttaagtcaaa taattcataa
     2161 aatatgaact taaaatgata cttctaatac tttatagcta ctaaaaatta caatgaatag
     2221 gctgatttgc ttaagggctt cggcaaatca ggcaaaggca gggtagttgc cgactaaaga
     2281 aaatgatagt tattatcata tatgtatttg ttttatatgt gagtttcttt gaacaaatgt
     2341 ttatttgtgc gctaaaccgt gctacaatct ttaacattca tattctgtga attttaaaca
     2401 accactttta ccaaaaggag ctctaaaaat gggacagtac aagaagctat ggtacttgct
     2461 gtttgccgtt ctggcggtat gctttaccat tcttggctat atgggcagcg aggtttacaa
     2521 aaaagccccg ccttaccctg aacaggtcgt ttccgcatca ggcaaagtgc tgatgacgaa
     2581 agacgatatt ttggcaggtc agtctgcgtg gcagagtacc ggcggtatgg aagtcggttc
     2641 gattctgggt cacggcgcat atcaggctcc ggactggacg gccgactggc tgcatcgtga
     2701 gttggttgca tagttggatt tgaccgcgca acagacttac ggcaaaaaat tcgatgaagt
     2761 ttcccctgaa gaacaagccg ttctgaaaac ccgactggct gacgaatacc gcaaccaaag
     2821 ccgtattaaa gaagacggca gcgtcgtcat cagcgatacg cgcgtgaaag ccatcgaaag
     2881 catcctgcct tattaccacg gtgtttacgg cgatgatccc gcgctgcaaa ccacccgcga
     2941 acactttgca atgaaaaaca acacattgcc aagccaagaa gcgcgtgaaa aactgttcga
     3001 cttcttcttc tggacttctt ggtctgcttc gaccaaccgt cctgacgaga cgttcactta
     3061 taccaacaac tggccgcacg agcctttgat caacaacgta ccgaccactg aaaactatat
     3121 gtggtcattc accagcgttg ttcttctgct gatgggcatc ggtttgttga tgtggggtta
     3181 ttccttcctg accaaacacg aggaagtgga agtgccgtct gaagacccga tttccaaaat
     3241 ccaactgacc ccttcacaaa aagcattggg caaatacgtc ttcctgacgg ttgccctgtt
     3301 tgtggtacaa gtattgctgg gcggtctgac cgcgcactac accgtcgaag gtcagggttt
     3361 ctacggcatt gacgaggcgt tgggctttga aatgtccgac tggttccctt acgccctgac
     3421 ccgtacttgg cacatccaat ccgccatctt ctggattgca accggctttt tgacggcagg
     3481 tttgttcctt gcgccgattg tcaacggcgg caaagatccc aagttccaac gtgcaggcgt
     3541 gaacttcctc tatatcgccc tcttcatcgt ggtcggcggc tcttacgcgg gcaacttctt
     3601 cgcgttgacg cacatccttc ccccggaatt taacttctgg ttcggacacc aaggttacga
     3661 atacctcgat ttgggacgtt tctggcaact cctgctgatg gtcggcctgc tgttgtggct
     3721 gttcctgatg ttgcgttgca cggtttccgc cttcaaagaa aaaggcgtgg acaaaaacct
     3781 gctggcaatc tttgtcgctt ctatggtcgg tgtgggcgta ttctacgcac cgggactgtt
     3841 ctatggcgag aaatccccga ttgccgtaat ggaatactgg cgttggtggg tggttcacct
     3901 gtgggtggaa ggcttctttg aagtatttgc cactgccgct tttgcctttg tcttctacaa
     3961 tatgggcttt gtccgccgca gtaccgccac agcttctact ctggccgctg ccgccatctt
     4021 tatgttgggc ggcgttccgg gtacgctgca ccacctgtac ttctccggct ctacctccgc
     4081 ctctatggca atcggtgcct gcttctccgc tttggaagtc gtgccgctgg tgttgctggg
     4141 ccgtgaagca tacgagcatt ggtcttacca acacctgtcc gactgggcga aacgcctgcg
     4201 ttggccgctg atgtgcttcg tggcagtcgc cttttggaat atgatcggtg ccggtgtatt
     4261 cggtttcctg attaacccgc cgatttccct gttctatatc caaggtttga atacttctgc
     4321 tgttcatgcg cacgccgcct tgttcggtgt gtacggtttc ttggcattgg gcttcgtatt
     4381 gctggttgcc cgttatttga aaccgaacgc gcagtttgac gacaaactga tgacttgggg
     4441 cttctggctg ctcaacggcg gcttggtcgg tatgattgcc atcagcctgt tgccggttgg
     4501 cgtgattcag gcatacgcct ccatcacgca cggcctgtgg tatgcacgca gcgaagagtt
     4561 cctgcaaatg gaaatcctcg acaccttgcg ttgggtacgt acggcagctg acttggtctt
     4621 tatcggcggt gcaatctgcg ttgccatcca agccactaaa atcgtattcg gccgcgacaa
     4681 ataagttttg cggtatgaaa tgagcaactg cacccgtttt cgggtgcagt tttttattgc
     4741 ggattgggac gggaatggaa aaggatgtgg attttttatt ttaatcggct atacaattgc
     4801 tgctttcatg ccgtctgaag cacgtttcag atggcatcgg tttacatcag ataaggataa
     4861 aaatgggtat ttacgatttt caaatgaaag atgcggaagg caatgcggtt gatttgtcag
     4921 gctatcgcgg caaggttctg ctgattgtca acacggcaac gcgttgcggt ctgaccccgc
     4981 aatacgaggc tttgcagaag ctgtatgcac aatataccgc agaaggcttg gagattttgg
     5041 attttccgtg caaccagttc cgcgaacagg ctcccgaaag cagcggagaa attgcccaag
     5101 tgtgtatgat gaagtttggc acgaagttta agattttcga caaaatcgaa gtcaatggag
     5161 caaataccgc gcccttgtat gcctacctga aatccgtcaa accgcaagat aaaggcaatc
     5221 atctgtttaa agatttcgtg ttgaagctcg cagctttggg agagaagcgc gacgaaggcg
     5281 acatcaaatg gaactttacc aaattcctcg tcaaccgcga cggcgaagtg gtcgagcgtt
     5341 ttgcgcctag tgttacgccc gaagaaatcg aagccgatat tcgggcattg ctgtaatctg
     5401 ccgccgtctt gggaaatgcc gtctgaaggc ttcagacggc atttgtccgt ttgcgggttt
     5461 attccgaaat atcggcaaca ccgctttcgg ggaagatggg caaatccggc ggtgggagca
     5521 gggtatccaa agtcagggcg gacgcatcga gtgtggggta gccttcaaac gcgaccgaat
     5581 aaccgctgtt tccgttcata cggattcggg cgtgcgcgcc cagagggaaa gtgattttgt
     5641 cggcaatgtg cccgaaggga aagcccgtca gcacggggat tttcgccgtg cgcgaaacat
     5701 ggttggcaac ggcggaaaaa tcataagacg gatcatagac atctcgaatt ttttccatac
     5761 ggaaattgcc gaacacgatg gcgcgctgtt tcttcaaaat acccgaaaga tacagcgtat
     5821 tgagcatacg ttcgatgcgg tagggctgtt cgccgacatc ttcgaggaac aaaatgccgc
     5881 cgtcgatgtc gggcatataa ggcgtgccgg cgagcgaggc gaggacgctt aagttgccgc
     5941 cccacaatat gccttcggtt tcgacatcgg cgcgttggat ataaggaaca tcaacggtca
     6001 ggcggttttg ggttgcaccc ttgataaagg catccatcgt aaacgcaccg ggggcgggtt
     6061 tgccaaaatc gctataagcc atcgggccgg caaaactcat catattgcct tttgccaaca
     6121 atgccagctg gacggcgcat acgtcgctga atccgaaaaa cagcgtgccg tgttcgcgca
     6181 tccttgcgcc gagcgaagca aaatcgatat gcggcagaat ccgcgccgca ccgtaaccgc
     6241 cgcgcaagcc catcagcact ttaggcgtgg cgacgcggcc ggaagcgacc tcttggaaat
     6301 cggcgacacg ttgtgcgtcc gtaccagcaa accgttggaa gcggcggctg cccgcctgtt
     6361 ggttggttac ggtaaaaccg gcattgtaaa ggcgggttaa ggctgtgttg acgcggttgg
     6421 tgtcttcggc aaagcctgac gaagcgacaa cgcgcagaag gttgccgtcc gaactttgac
     6481 ggcgtggcgt ttggagaggc acggttcggg ctttcacaac agaatgggaa gagggaaggg
     6541 gcggaacgga tgtggcggat gtgccgcaag cctgaagcag tcccgcgccg gcggcggcgg
     6601 tgcaggtttt cagaaaacga cggcgggagg tcggttcggt cataatttcc ctttcatacg
     6661 gtttcagacg gcatcggcgg gcttaaagca gctttttaag ctgttccgtc caatcttgcg
     6721 gcagggtcat accgtgtttt cggacggggt ttgcccaaat cggcgcaggg aaggacgcat
     6781 cgttttcaaa gcgggcgata atatgccaat gcaggtgcgg cacgacattg cccaagctgg
     6841 cgaggttaat cttggcaggt tgaaacactt ggcgcatagc ggcttcgact ttgtacacca
     6901 tttccatcaa ttcgccgcgt tccgctgccg aaaggtcggt catttcggca atatgcttac
     6961 gccaaatgac gcggcagaat gcaggcgaac cgctgtcgtt atggacggcg atgacgcgca
     7021 gcttgggggt ttgcagcaaa atatcttcat cttgtgccgt gcagatgggg cagggttggg
     7081 cggtcatttt tccttattcc tgaaagtgtt taaaaaacgg tagggtaatt tttaatattt
     7141 caatctgtct gtccgcattg ccgttaattg taccacttca tagggcggtg ctctatgtgt
     7201 cgtcctgtgt gttgaaacat atcggacgcg tttgaacagt tgtgcggcaa actgttttag
     7261 cggcaggcaa gagatgccgt ctgaagccca ttgtccgtca ttcccacaca ggcagttgct
     7321 acggttgctg aagcccctta gccgtcgcgc aggcggttgc tacggttact aaaatcccgt
     7381 cattcccgcg caggcgggaa tccagtccgt tcggtttcag ttgtttctga taaatcttgc
     7441 agcgttgggt ttttagattc ccgctttcgc gggaatgac
//
LOCUS       DAXIFD010000097         7458 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.097, whole genome shotgun sequence.
ACCESSION   DAXIFD010000097 DAXIFD010000000
VERSION     DAXIFD010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7458
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.097"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            142..1086
                     /gene="tehA"
                     /locus_tag="ACFOCN_001419"
     CDS             142..1086
                     /gene="tehA"
                     /locus_tag="ACFOCN_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HFC6970554.1"
                     /translation="MSASKKFPIPLSYFSIALGLFALGLSWRYGASVGLLPALAAESL
                     LAAASVVWLLLVAAYLIKMFAYRNDFLSDLRDLVQCCFISAIPITAMLEGLALKPYQA
                     GAAAVLIYVGVAGQLAFSMYRAAGLWRGLHSLEATTPIIYLPTVATNFVSASSLAALG
                     HHDYAALFFGAGMFSWLSLEASILGRLRTAAPVGTAARGVVGIQLAPAFVGCGAYFAV
                     GGKVDGFALALIGYGCLQLLFLLRLTRWFWEGGFTMSFWGFSFGFAAMAGCGLHLAAS
                     GVLSGLGLTLATAGSAGVALLLVGTLHRIATGRFLVRG"
     gene            complement(1160..1843)
                     /locus_tag="ACFOCN_001420"
     CDS             complement(1160..1843)
                     /locus_tag="ACFOCN_001420"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HFC6970555.1"
                     /translation="MELVFIRHGQSEWNAKNLFTGWRDVKLSEQGLAEAAAAGKKLKE
                     NGYEFDIAFTSVLTRAIKTCNIVLEESDQLFVPQIKTWRLNERHYGQLQGLDKKQTAE
                     QYGDEQVRIWRRSYDTLPPLLDKDDEFSAHKDRRYAHLPADVVPDGENLKVTLERVLP
                     FWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDKDIMGLEIPTGQPLVYKLDDN
                     LKVLEKFYL"
     gene            2140..4443
                     /gene="parC"
                     /locus_tag="ACFOCN_001421"
     CDS             2140..4443
                     /gene="parC"
                     /locus_tag="ACFOCN_001421"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HFC6970556.1"
                     /translation="MNMQPHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDG
                     QKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTL
                     RYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEP
                     LHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPA
                     PDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSSK
                     ILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSR
                     IDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLK
                     FRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAVFRLTEIQAEDILEIR
                     LRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEIQADMKQYGDARRTL
                     VEEAGRAVLTQTTADEPITLILSEKGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTV
                     LPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSS
                     SGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDCKIIAATNQNR
                     ALAFPIGELKIMAKGKGLQIIGLNTGESMTHTAVSSEAEILIESEGRRGAAHKDRIPV
                     SLLEAKRGKKGRLLPISGSLKQLSSPK"
     gene            4464..6040
                     /locus_tag="ACFOCN_001422"
                     /pseudo
     CDS             4464..6040
                     /locus_tag="ACFOCN_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237220.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
     gene            6033..6500
                     /locus_tag="ACFOCN_001423"
     CDS             6033..6500
                     /locus_tag="ACFOCN_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009117578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HFC6970557.1"
                     /translation="MTELQHPVLVVDDETDILDLMEMTLMKMGLRVHTASGVAEAKNK
                     LDSQRYSLVLTDMRMPDGSGLEVVQHINSRLLDTPVAVITAFGNVDQAQEALRCGAFD
                     PDTMQIQDYLDQIERDIIEQTLKQTEGNRTQAAKRLGISFRSMRYRMERLNIG"
     gene            6604..7356
                     /locus_tag="ACFOCN_001424"
     CDS             6604..7356
                     /locus_tag="ACFOCN_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6970558.1"
                     /translation="MTDILIDNTATETVRTLIQAFPLVPVSQPPEQGSYLLAEHDTVS
                     LRLVGEKSSVIVDFASGAAQYRRTKGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLA
                     SLGLAVTAFEQHPAVACLLSDGIRRALLNPETQDTAARITLHFGNAAVQMPALVQTQG
                     KPDIVYLDPMYPERRKSAAVKKEMTYFHRLVGEAQDEAALLHTARQTAKKRVVVKRPR
                     LGEHLAGQAPAYQYTGKSTRFDVYLPYGTDKG"
BASE COUNT         1696 a         2233 c         1934 g         1595 t
ORIGIN      
        1 aatagtacga aaccgattca cttggtgctt cagcacctta gagaatcgtt ctctttgagc
       61 taaggcgagg caacgtcgta ctggtttttg ttaattcact atatctgtgc gttacgacgg
      121 catgccgtct gaagggtgtt tatgtctgca tctaagaaat ttccgattcc tttgagctat
      181 ttcagcatcg cgctgggctt gtttgccttg gggctgtcgt ggcgttacgg cgcgtctgtc
      241 gggctgctcc ccgccttggc cgccgaatcg ctgcttgcgg cggcttcggt tgtctggctc
      301 ttgctggtgg cggcatacct gatcaaaatg tttgcgtacc gaaacgattt tttgtctgat
      361 ttgcgcgact tggtgcaatg ctgcttcatc agcgcgattc cgattaccgc tatgctggag
      421 ggactcgcgc tgaagcccta tcaggcaggc gcggcggcag tcctgattta tgtcggcgtt
      481 gccggacagt tggcgttttc gatgtatcgg gcggccggtc tgtggcgcgg cctgcattcc
      541 ttggaggcga cgacgccgat tatttatctg cctacggttg cgacaaactt tgtcagcgcg
      601 tcatctctgg cggcgttggg gcatcatgat tatgcagctt tgtttttcgg cgcgggtatg
      661 ttttcctggc tgagcttgga agcctccatc ttgggcaggc tgcgcacggc ggcaccggtc
      721 ggcacggcgg cgcgtggcgt ggtcggcatc cagcttgcgc ccgcctttgt cggctgcggc
      781 gcgtattttg ccgtcggcgg taaagtcgac ggttttgcgt tggcattaat cggctacggc
      841 tgcctgcagc ttttgttctt gctacgcctg acccgctggt tttgggaagg tggttttacg
      901 atgagctttt ggggattttc attcggtttc gcggcaatgg caggatgcgg tctgcatctg
      961 gcggcttctg gcgtattgtc gggcttgggg ctgacgcttg ccaccgccgg atcggcaggc
     1021 gtggcgctgc tgcttgtcgg tacgctgcac cggatagcga cggggcgttt cttggtacgc
     1081 ggctgatgcg ttttgccgcc ttgtcaaaaa tgccgtctga acgctcaagc cttcagacgg
     1141 cattttttat ttcacaccct tacaggtaga atttttcgag gactttcaaa ttgtcgtcca
     1201 atttgtacac caacggctga ccggtcggga tttccaagcc catgatgtct ttgtcggaaa
     1261 tgccctcgat gtgttttgcc agcgcgcgca gggagttgcc gtgcgccgcc accaagacgc
     1321 gtttgccgct caaaatcgcg ggggcgattt ggtcttccca aaacggcaat acgcgctcca
     1381 gcgttacttt caggttttcg ccgtcgggta cgacatcggc aggcagatgg gcatagcggc
     1441 ggtctttgtg tgcggaaaac tcatcgtctt tgtccaaaag cggcggcagg gtgtcgtagc
     1501 tgcgccgcca gatgcggact tgctcgtcgc cgtattgttc ggcggtttgt tttttgtcca
     1561 ggccttgcag ttggccgtag tggcgttcgt tcagccgcca tgttttgatt tgcggtacga
     1621 acagttggtc ggattcttcc aaaacgatgt tgcaggtctt aatcgcgcgg gtcaggacgg
     1681 atgtgaaggc gatgtcgaac tcatagccgt tttctttcag ttttttaccg gcggcggcag
     1741 cctcggcaag cccctgctcg ctcagcttca cgtcgcgcca gcctgtaaac aggtttttcg
     1801 cgttccattc gctttgtccg tggcggataa ataccagttc catatcgtct ccaatgtgtg
     1861 aaagtgggaa agccttattt ataacatatt ttcacatttc ccgtatttga ttcagattca
     1921 gacacgcgcc cactatggtt tgccgttttg atttacaata atgtcctttg ttttacattc
     1981 cgcatacaca atgtttcaac acacaggacg acacataaag caccgcccta tgtgttgccc
     2041 tgatttggaa ggggttgccc cctcccaaat aaagtctgat tctaccgccc cgaaggacag
     2101 atgtccaagt ggcggggttt caaccgaaaa ggaaatacga taaatatgca accgcacgct
     2161 ccacataccg attccaatac gctgatgctc ggccgatacg ccgaacgcgc ctatctcgaa
     2221 tacgccatga gcgtggtcaa aggccgcgcg ctgcctgaag tttcagacgg ccaaaagccc
     2281 gttcagcggc gcattttgtt tgcgatgcgc gatatgggtt tgacggcggg ggcgaagccg
     2341 gtgaaatcgg cacgcgtggt cggtgagatt ttgggtaaat accatccgca cggcgacagt
     2401 tccgcctatg aggcgatggt gcggatggcg caggatttta ccttgcgcta tcccttaatc
     2461 gacggcatcg gcaacttcgg ttcgcgcgac ggcgacggtg cggcggcgat gcgttacacc
     2521 gaagcgcggc tcacgccgat tgcggaattg ctgttgtccg aaatcaatca gggaacggtg
     2581 gatttcgtgc cgaactacga cggcgcgttt gacgagccgc tgcacctgcc cgcccgcctg
     2641 cctatggtct tgctcaacgg cgcgtcaggc atcgcggtgg gcatggcgac cgagattccg
     2701 tcgcacaatt tgaacgaagt gacgcaggcg gcgattgcgc tgttgaaaaa gccgacgctg
     2761 gaaaccgccg acctgatgca atatattcct gcgcccgatt ttgccggcgg cggtcaaatc
     2821 atcacgccgg cggacgaatt gcgccggatt tatgaaaccg gcaagggcag cgtgcgcgtg
     2881 cgtgcgcgtt atgaaatcga aaaattggcg cgcggacaat ggcgcgtcat cgtaaccgag
     2941 ctaccgccga acgccaattc ctccaaaatc cttgccgaaa tcgaagagca gaccaacccg
     3001 aaaccgaaag caggcaagaa gcagctcaac caagaccagc tcaataccaa aaagctgatg
     3061 ctggatttaa tcgaccgcgt gcgcgacgag tccgacggcg aacatcccgt acgactggtg
     3121 ttcgaaccga aatccagccg catcgatacc gataccttca tcaacacgct gatggcgcaa
     3181 acttcgctgg aaggcaatgt gtccatgaac ttggtgatga tgggtttgga caaccgcccc
     3241 gcgcagaaaa acctgaaaac gattttgcag gaatggctgg atttccgcgt cgttaccgta
     3301 acacgccgtc tgaaattccg tttgaaccaa gtggaaaaac ggttgcacat cctcgaaggc
     3361 cgtctgaaag tctttctgca catcgacgaa gtgattaaag tcatccgcga atcagacgac
     3421 ccgaaaaccg atttgatggc ggtgttcagg ctgaccgaaa tccaagccga agacattttg
     3481 gaaatccgcc tgcgccagtt ggcgcgtttg gaaggtttca aactcgaaaa agaattgaac
     3541 gaattgcgcg aggaacaagg ccgtctgaac atccttttgg gcgacgaaaa cgaaaaacgc
     3601 aagctgatta tcaaagaaat acaggcggat atgaaacaat acggcgacgc gcgacgcacg
     3661 ctggtggaag aagccggacg cgccgtgttg acgcagacca ctgccgacga acccatcacg
     3721 ctgattctgt cggaaaaagg ctggatacgc agccgcgccg gacacaacct tgatttgagc
     3781 caaaccacgt tcaaagaagg tgaccgcctc aaacaaaccc ttgaaggccg caccgtttta
     3841 cctgtcgtca tcttggattc atcgggcaga acctacacgc tcgatgccgc cgaaatcccc
     3901 ggcgggcgcg gcgacggcgt accggtttca tccttaatcg agctgcaaaa cggcgcgaaa
     3961 cccgttgcga tgttgacagg attgccggaa caacattatt tattatcaag cagcggcggc
     4021 tacggcttca tcgccaaact gggcgatatg gtcgggcgcg tgaaagcggg caaagtagtg
     4081 atgactgtgg atagcggcga aaccgtcctg ccgccggttg ccgtctatgc ttcttcgctg
     4141 atcaaccccg actgcaaaat cattgccgcc accaatcaaa accgcgccct cgccttcccc
     4201 atcggcgaat tgaaaattat ggcgaaaggc aaaggactgc aaatcatcgg attaaacacc
     4261 ggtgaatcga tgacgcatac cgccgtttct tccgaggcag aaatcctgat tgaaagcgaa
     4321 ggcaggcgcg gcgcagcgca caaagaccgc atccccgtct ccctgcttga ggcaaaacgc
     4381 ggcaaaaaag gcagactatt acccatatcg ggcagcctga aacagctttc ttcccccaaa
     4441 taaacccgat tccacacata attatggtga tttccaaccc ccgcgaactt gaaaaactca
     4501 aagaccggat tcccaatctg atcaacatcg cccgcatcgc catcgtcctc cccctgctga
     4561 ttatgcatat cttcgggttg gaggtcagcg ggcatgaaaa cctgtacgcc tcatggacga
     4621 catgggcatt ttacttgtgg ctcgccattt cctgctggat gattttcttt tccatcatcc
     4681 atccgcattg gcaatggcag tcgctgaaaa tgccgcgttt cagcgcggtg gcggacatca
     4741 cgatgatcgg cgtgctgacc tacctgttcg gcggcatcga ctcggggttc ggcatcctga
     4801 tcctgccctt cgtgggcagc tcctgcctgc tcagttacgg gcgttacccc ctgctctatg
     4861 ccagctacgc cgccatcctg ctgatattca acgccattgc cgacggcgat atcggcaaat
     4921 atccgcacat atcggatgcc cgaaccgcct cggcaacctt catcctcgtc gccgcctcct
     4981 atctttccgc catcttcacc tcactgtcgg tcaaatacat cgacagcgcc ggccaactgg
     5041 cccgcgacaa ccacctcgcc taccggcgca tcaaaggctt gagccaaacc gtactcgaac
     5101 gcgttcaaga agccgtcgtc gtcatcaacg tcgagcatca gaccatactg ttcaataaaa
     5161 aggcaaaaga cctgctaccc atgcttgaaa tcggacagca tactgtcctg ttcgacccta
     5221 ttaccgtttt atgggacaag gcctcttcgc gtactttcga acgcaatatc gacacgcccg
     5281 ccctgaccgc ccgcatccgc gccgtgccga tgaacaaaga gcagaacaag ctgctcatcc
     5341 tctacatccg cccgcaaagc gaaattcagg cagaagccct gtccgtcaaa cttgccgcac
     5401 tcggacaact gaccgccaac ctcgcccacg aaatccgcaa cccgatgtcc gccatccgcc
     5461 atgcaaacga cctgttgcgc gaaaatatgg aagcgggggc ggcagatccg ttcaacgcca
     5521 aattgtgcaa aatcatcgac ggcaacgtct gccgtatcga caaaatgctc gaagacattt
     5581 cctcgctcaa caagcgcaac aaaaccgaac gcgaaaccat cggcctgata ccgttttggg
     5641 cggaattcaa acaagagttc ctgctcggcc atcccgatgc cgccggctgc atccgtccgg
     5701 acattcaggg cggcagcctg accgcctatt tcgatcccgc ccacctgcgg caaattatgt
     5761 ggaacctcgc caacaacgcg tggcggcaca gccgcaaaca gcccggctcg atttccgtca
     5821 ccatccgccc cgcgcaaaaa aacaccgtct gcatcctctt tgccgaccgc ccgaagtgca
     5881 ggaacacctg ttcgaaccct tttacaccac ggcggaaaac ggcaccggcc tcgggctgta
     5941 tgtcgcccgc gaactggcac acgccaactt cggcgatttg acctacctgc cggaagccaa
     6001 atgtttcaaa ctcacattac cggaaaaaag caatgactga actgcaacat cccgtcctcg
     6061 tcgttgatga cgaaaccgat attctcgacc tgatggaaat gaccctgatg aaaatgggct
     6121 tgcgcgtcca taccgcgtca ggcgttgccg aagcaaaaaa caagctcgac agccaacgct
     6181 attcgctcgt cctgaccgat atgcgtatgc cggacggctc ggggctagaa gtcgtccaac
     6241 acatcaacag ccgcctgctc gatacgccgg ttgctgtcat caccgccttc ggcaatgtcg
     6301 atcaggcaca ggaagccctg cgttgcggcg cgttcgaccc cgataccatg cagatacagg
     6361 actatctcga ccaaatcgaa cgcgacatca tcgaacaaac cctcaaacaa accgaaggca
     6421 accgcacgca ggccgccaaa cgcttgggca tcagcttccg ttcgatgcgc taccgtatgg
     6481 aacgcctcaa catcggctga cgacaaaacg gcatccgcac catctccgcc cacccgaaaa
     6541 aatgccgtct gaaacggcac ggcaaagcgg gttcgcccca cgcccgaacg gacacaaaac
     6601 accatgaccg acatcctcat tgacaacacc gccaccgaaa ccgtccgcac cctgatacag
     6661 gcattccccc ttgtgcccgt ttcccaaccg cccgaacaag gcagttacct ccttgctgaa
     6721 cacgataccg tcagcctcag gcttgtcggg gaaaaaagca gcgtcatcgt cgattttgcc
     6781 tccggcgcgg cacaataccg gcgcacaaaa ggcgggggcg aactcatcgc caaagccgtc
     6841 aaccacaccg cgcaccccac cgtttgggac gcaaccgcag gattggggcg cgacagcttc
     6901 gtcctcgcct cgctcgggct ggccgttacc gccttcgagc aacatcccgc cgtcgcctgc
     6961 ctgctttcag acggcatccg ccgcgccctc ctcaatcccg aaacgcaaga caccgccgcg
     7021 cgcatcaccc tgcatttcgg caacgccgca gtacaaatgc ccgcacttgt tcaaacacaa
     7081 ggcaaacccg acatcgtcta tctcgacccc atgtatcccg aacgccgcaa aagtgccgcc
     7141 gttaaaaaag aaatgaccta cttccaccgg ctcgtcggcg aagcgcaaga tgaagcggca
     7201 ctcctgcata ccgcacgcca aacagcaaaa aaacgcgtcg tcgtcaaacg cccccgcctc
     7261 ggcgaacacc ttgccggaca agcccctgcc taccaataca ccggcaaaag cacccgcttc
     7321 gacgtttacc tgccctacgg gacggacaag ggataacgcc cataaaacaa gacaccgaaa
     7381 aatttgccgt tcttatgcaa acgagaaacc ggtttttgcg tttcgactgt tttggataaa
     7441 tcatcacacc ttaaagtt
//
LOCUS       DAXIFD010000098         7354 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.098, whole genome shotgun sequence.
ACCESSION   DAXIFD010000098 DAXIFD010000000
VERSION     DAXIFD010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7354
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.098"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..86)
                     /locus_tag="ACFOCN_001425"
     CDS             complement(<1..86)
                     /locus_tag="ACFOCN_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6970559.1"
                     /translation="MRKSRLSRYKQNKLIELFVAGVTARTAA"
     gene            complement(392..1651)
                     /gene="rho"
                     /locus_tag="ACFOCN_001426"
     CDS             complement(392..1651)
                     /gene="rho"
                     /locus_tag="ACFOCN_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HFC6970560.1"
                     /translation="MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMK
                     KGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVR
                     VPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGR
                     AIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTSNYPEVELIVLLIDERPEEVTE
                     MSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNT
                     VVPTSGKILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEE
                     FKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPMDE
                     IEAAEFLIGKIKASKNNDDFFELMRGK"
     gene            complement(1871..4255)
                     /gene="ppsA"
                     /locus_tag="ACFOCN_001427"
     CDS             complement(1871..4255)
                     /gene="ppsA"
                     /locus_tag="ACFOCN_001427"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HFC6970561.1"
                     /translation="MADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGG
                     FATTADAYRAFLAHNGLSERISAALAKLDVEDVAELARVGKEIRQWILDTPFPEQLDA
                     EIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLENVKEAMRH
                     VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVF
                     VTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKS
                     VTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQAR
                     PETVKSQEEGSRNLRRFSINGEKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDV
                     LVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQE
                     VTVSCAEGDTGFIYSGLLDVQITDVALDNMPKAPVKVMMNVGNPELAFSFANLPSEGI
                     GLARMEFIINRQIGIHPKALLEFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVAT
                     LAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFA
                     LECKALKRVRDEMGLTNVEIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCEL
                     PSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRDSGLVSESFDERNPAVKVMLHLAIS
                     ACRKQNKYVGICGQGPSDHPDFAKWLVEEGIESVSLNPDTVIETWLYLANELNK"
     gene            4667..5488
                     /locus_tag="ACFOCN_001428"
     CDS             4667..5488
                     /locus_tag="ACFOCN_001428"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HFC6970562.1"
                     /translation="MSSPRHVFYISDRTGLTAENIGEALLNQFGNLSFKRHTHPFVDT
                     PEKARAVVEKVNRSRQENGQRPIAFVSVVDDEIRRIIKGADAFQINFFETFLGLLEKE
                     LNTEATASEQGHHSIGNTKRYDARMEAVNFSLNHDDGVSDKNLQEADVILMGVSRSGK
                     TPTCLYLALQYGIRAANYPLIPDDLESADLPRMVKPYRDKLFGLTIQPERLQAIRQER
                     RPNSTYAKIDTCRSEVADAQSMFRRHGIPFANTTDKSVEELAVHILQACKLKRRF"
     gene            complement(5728..6390)
                     /locus_tag="ACFOCN_001429"
     CDS             complement(5728..6390)
                     /locus_tag="ACFOCN_001429"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6970563.1"
                     /translation="MIHAVLFDLDGTLADTALDLGGALNTLLARHGLPPKSMDEIRNQ
                     ASHGAAGLLKLGTGITPDHPDYARWRTEYLDEYDSRYAQDTTLFGGVNELIAELDRRG
                     IKWGIITNKPMRFTDKLAPKLGFIIPPAVVVSGDTCGEPKPSIKPMLYACGQIHADPQ
                     HTLYVGDAERDIQAGRNAGMKTVLAEWGYIAPEDDTGSWQADFHIRTPLDLLECLDKI
                     QP"
     gene            complement(6403..7230)
                     /locus_tag="ACFOCN_001430"
     CDS             complement(6403..7230)
                     /locus_tag="ACFOCN_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HFC6970564.1"
                     /translation="MKLDIYALLERALLSGDPDEKGRLTDEAFAAVQNMDGAETNTPP
                     LDFPRAGRPDKPVLVAPSQLTPRKMNTAEGYAAMLHAIAHIEFNAVNLALDAAYRFRT
                     LPFQFVRDWVKVAKEEVYHFRLMRDRLRAFGFDYGSFEAHNHLWDMAYKTAYDPLLRM
                     ALVPRVLEARGLDVTPGIRAKVAQRGDSETCGVLDIIYRDEVGHVAIGNHWYQHLCRE
                     RGLEPITLFRSLIARYDMFIFRGYVNIEAREKAGFSRFELDMLEDFEQGLKQNKNTV"
BASE COUNT         1529 a         1764 c         2169 g         1892 t
ORIGIN      
        1 tctgctgctg ttcttgcagt tacacctgcg acaaacagtt caatgagttt attttgttta
       61 taccggctta gacgactttt tctcataggg gcaactctaa cttaatttga atttccctag
      121 ttatctagga cagccccaaa tttatacaaa aatgagcgcg gttcggcgca accttgaatc
      181 aagttcccgc atcggttttc attgccggta cggatgcgtt caagccggtt ttgcaaaggc
      241 cgcgctttcg gcaagcggac acggacactg ccgacggttg cgccgttaac ggggggaggg
      301 aggagctgcg ccgaccgtgt gaatgaaagt gccgtctgaa acccgatttt caggcttcag
      361 acggcatttc gcattaatgc gggcggcgcg tttatttgcc gcgcatcagt tcaaagaaat
      421 catcattgtt tttagaggct ttgatttttc cgattaaaaa ttcggctgcc tcgatttcgt
      481 ccatcgggtg caggaacttg cgtaagagcc acatacgttg caactggtcg ttcggcacaa
      541 gcagctcttc gcggcgcgtg ccggatttgt tgatgttgat ggcggggaag aggcgttttt
      601 ccgccatacg gcggtcaagg tgcaattcca tattgccggt gcctttgaat tcttcgtaaa
      661 tcacatcgtc catacggctg ccggtttcaa ccaatgcggt ggcgatgatg gtcagcgaac
      721 cgccttcttc cacgttgcgc gccgcgccga agaaacgttt ggggcggtgc agtgcgttgg
      781 catcgacacc gccggttagg attttgcccg aggtaggcac gacggtattg taggcgcggg
      841 caaggcgggt aatcgaatcc agcaggatga ccacgtcttt tttgtgttct accatacgct
      901 tggctttttc aagcaccatt tcggcaactt ggacgtggcg ttgcgccggt tcgtcaaagg
      961 tggaggaaac cacttcgccg cggacggaac ggctcatttc ggttacttct tcgggacgct
     1021 cgtcaatcaa gaggacgatg agttcgactt cgggatagtt tgaggtaacg gcgtgggcaa
     1081 tgttttgcag catcacggtt ttaccgcttt tgggcggggc aaccaagagg gcgcgctgac
     1141 ctttgccgat aggggaaatc aggtcgatgg cacgtccggt caggttttct tcggacttta
     1201 agtcgcgttc cagcttcaac tgttcggtcg gaaacagcgg ggtcaggttt tcaaacagga
     1261 ttttatggcg gcatacttcc gggtggtcgc cgttgatggt atcaagcctg accagggcaa
     1321 aatagcgttc gttgtctttt gggacgcgca cgcttccttc gatggtgtcg cccgtatgca
     1381 ggttgaagcg gcggatttgg gtgggcgaga catagatgtc gtcggggccg gcaagatagg
     1441 acgtgtccgc gctgcggagg aagccgaagc cgtcgggcag gatttcaagc gtgccggagc
     1501 aggtgaaacc ctcgcctttt ttcatcatct ggcggacgat ggcaaatacg agatcttgtt
     1561 tgcggaatcg gttggcgttt tcgatgccgt gttcttccgc caattctaag agtttggaaa
     1621 tgtgcagggt ttgtaattcg gagacgtgca taataatgat gtattttgaa gaggaaaaag
     1681 acaggcagat gccgtctgaa agaagaagct gaccgttgcc ggttgctcgg ggaaggggga
     1741 attgtaggca gtcggcgcgt gggtgtcaaa tattatcgcg gacggggcat cggcaggaaa
     1801 tgccgtctga gcggagctgc ttggaaaaaa atacccccgc gcttttcagg ctcgggggta
     1861 tgggcattga ttatttgttc aattcattcg ccaaatatag ccaagtttcg atgacggtat
     1921 ccgggttcag ggaaacgctt tcaatgcctt cctcaaccag ccatttggcg aagtccggat
     1981 ggtcggacgg gccttgaccg cagatgccga catatttgtt ctgcttgcgg caggcggaga
     2041 tggcaaggtg cagcatcact ttgacggcag ggttgcgttc gtcaaacgat tcggatacca
     2101 agccgctgtc gcggtcgaga ccgagggtca gttgggtcat gtcgttcgag ccgatggaga
     2161 agccgtcgaa gtattgcagg aattgttccg ccaataccgc gttgctcggc agctcgcaca
     2221 tcataatcag gcgcaggccg tttttgccgc gttccaagcc gttttctttc agggctttga
     2281 caacggcttc ggcttcgccc aaagtgcgga cgaacggaat catgatttca acgttggtca
     2341 accccatttc atcgcggacg cgtttcaagg ctttgcattc caaggcgaaa cagtctttga
     2401 agttgtcggc gacataacgc gccgcaccac ggaagcccaa catcgggttt tcttcatgcg
     2461 gttcgtatac gttgccgccg accaggttgg cgtattcgtt ggatttgaag tcggacatac
     2521 ggacgatggt tttacgcgga taaaccgatg cggccaatgt cgccacgcct tcggcgattt
     2581 tatcgacgta gaagtcgaca ggggacgcgt aaccggcgat acggcgggta atttccgctt
     2641 ttaattcgtc gtcttgtttg tcaaattcca acaaggcttt ggggtggata ccgatttggc
     2701 ggttgatgat aaattccata cgcgccaagc cgatgccttc gctgggcagg ttggcgaagc
     2761 tgaatgcgag ttcgggattg ccgacgttca tcatgacttt tacaggtgct ttaggcatgt
     2821 tgtccaaagc aacatcggta atttgtacgt ccagcaggcc ggagtagatg aagccggtat
     2881 cgccttcggc acaggatacg gtaacttctt gaccgttttt cagcaattcg gttgcattgc
     2941 cgcagccgac aacggcagga atacccagtt cgcgcgcgat gatggcggcg tggcaggtac
     3001 gtccgcccct gttggtcacg atggcggaag cgcgtttcat caccggttcc caatctgggt
     3061 cggtcatgtc ggtaaccagt acgtcgccgg cttcgacgga atccatctcg gaagcatctt
     3121 taatcaggcg taccttgccc tgaccgactt tctgaccgat ggcgcggcct tcgcacaaga
     3181 cggttttttc gccgttgata gaaaagcggc gcaggttgcg gctgccttct tcctgggatt
     3241 tgacggtttc gggacgggct tgcaggatgt agagtttgcc gtccaagccg tcgcgtcccc
     3301 attcgatgtc catcgggcgg ccgtagtgtt tttcgatggt cagtgcgtaa tgcgccaact
     3361 cggtgatttc ttcgtcggta atggagaagc ggttgcggtc ttcttcgggg acatcgacgt
     3421 tggttaccga tttgccggct tctgctttgt cggtaaaaat cattttgatg tgttttgagc
     3481 ccatggtttt gcgcaggatg gcaggtttgc ctgctttcag cgtgggtttg aacacataga
     3541 attcgtcggg attgactgcg ccttgtacga cgttttcgcc cagaccgtag gatgaagtga
     3601 caaagacgac ttggtcgtaa ccggattcgg tatcgagggt gaacatcacg ccggacgcgc
     3661 cgctgtcgga acgcaccata cgctgcacgc cggcggaaag ggcgacgatg tcgtgttcga
     3721 agcctttgtg gacgcggtaa gaaatggcgc ggtcgttgta cagggaggcg aatacatggc
     3781 gcatcgcttc tttaacgttt tccaagccgt tgatattcag gaaggtttcc tgttggccgg
     3841 caaatgatgc gtcgggcagg tcttcggcgg ttgcggaaga gcgtacggca acggaaatgt
     3901 ccgcgccgcc ggcatcggca accattttgt tccatgccgc ttcgatttcg gcatcgagct
     3961 gttcggggaa gggcgtgtcc aaaatccatt ggcggatttc tttgccgacg cgtgccagtt
     4021 cggcaacgtc ttcgacatct aattttgcca gtgcggcgga aatgcgttcg ctcagaccgt
     4081 tgtgtgcgag gaatgcgcgg taggcatcgg ctgtggtggc aaagccgccg gggacgcgaa
     4141 cgcctttttc ggtcagctga ctgatcattt cgcccagcga ggcgttttta ccgcccacgc
     4201 gttcaacatc tgtcatacgc aggttttcaa accaaattac gtagttgtcg gccatttgtg
     4261 tgtccaatcc aaaatatgtt aaaaaagaaa caaatccgcg tgcttatttt aagcgattcg
     4321 ttcctctgct gtcatgtgtt ttatccgttt taaaatcatg atgccgtctg aaaaattgcg
     4381 gtttcggcgt gtgtagcggt ttgaaacttg cagccggtat acttcttttt ttgggtattt
     4441 tctttgtaaa acaggtggtt tgaataggtt aatgtttttt ctgtttgatt tttttgttta
     4501 ttttttaaaa ttttctgcca aaaaatactt tatataaata attttatttc aaaattatat
     4561 tgtgtctgtt tgggtgtaat ccgaggtagg tgtgctgcga gtgctttcct tgtgtctgcc
     4621 gctgctgtta tgatgggatt ttaaacctgt gttttaagga tggaagatga gcagtccgcg
     4681 ccatgtgttt tacatttccg accgtaccgg tctgactgcc gagaatatcg gcgaggcttt
     4741 gctgaaccag tttggcaatc tgtcgttcaa acgccatacg catccgtttg tcgatacgcc
     4801 ggaaaaggcg cgcgcggtgg tggagaaggt caatcggagc cggcaggaaa acggtcagcg
     4861 tccgattgcg tttgtcagtg tggttgatga cgaaatccgt cggattatca aaggggcgga
     4921 tgcttttcag attaatttct ttgagacttt tttgggactg ttggagaaag aactcaatac
     4981 cgaagccacg gcatccgagc aggggcatca cagtatcggt aatacgaagc gttacgatgc
     5041 gcgtatggag gcggtgaatt tctcattgaa ccacgatgac ggggtcagcg ataagaacct
     5101 tcaggaagcg gatgtaatct tgatgggtgt atcgcgttcg ggcaaaacgc cgacctgcct
     5161 ttacctcgcc ctgcaatacg gcatccgtgc ggcaaactat ccgctgattc ccgacgattt
     5221 ggaatcggcc gatctgccgc gtatggtcaa gccttatagg gataagctgt tcgggttgac
     5281 catccagccg gaacgtttgc aggccatccg ccaagagcgc cgcccgaatt caacttatgc
     5341 caaaatcgat acatgccgca gcgaggtggc ggacgcgcag agtatgttca gacggcatgg
     5401 gattccgttt gcgaatacga cggataaatc agtggaagag cttgccgtac acatccttca
     5461 ggcgtgcaag ctcaaacgca ggttttgacg ggttttgatt cggtttgaag gtggaactgc
     5521 cgtctgaaat caggtttcag acggcagttt tatagtggat taacaaaaat caggacaagg
     5581 cgacgaagcc gcagacagta caaatagtac ggagccgatt cacttggtgc ttcagcacct
     5641 tagagaatcg ttctctttga gctaaggcga ggcaacgacg tactggttta gatttaatcc
     5701 actatatgtt tgtggggcgg atatttttca gggctgtatt ttgtccagac attcgagcag
     5761 atcgagcggc gtgcggatgt ggaaatccgc ctgccatgag ccggtatcgt cttcgggagc
     5821 gatgtagccc cattcggcga ggacggtttt catgccggcg ttgcggcctg cttggatgtc
     5881 gcgttcggca tcgccgacgt agagtgtgtg ttgcgggtcg gcgtggattt gtccgcacgc
     5941 atacagcatg ggtttgatgc tgggcttggg ttcgccgcag gtgtcgccgc tgacgacgac
     6001 ggcgggtggg atgatgaagc cgagtttggg ggcgagtttg tcggtgaagc gcatgggttt
     6061 gttggtgatg atgccccatt tgatgccgcg tctgtcgagt tcggcgatga gttcgtttac
     6121 gccgccgaag agggtggtgt cttgggcgta gcggctgtcg tattcgtcaa ggtattcggt
     6181 gcgccatcgg gcatagtcgg ggtggtcggg ggtgatgcct gtgccgagct tgagcagtcc
     6241 tgctgcgccg tggctggctt ggttgcggat ttcgtccatg cttttgggcg gcagtccgtg
     6301 gcgggcgagc agggtattga gtgcgccgcc gaggtctagg gcggtgtcgg caagcgtgcc
     6361 gtcgaggtcg aagagtacgg cgtgtatcat gtatgttcct tttcagacgg tatttttgtt
     6421 ctgtttcaaa ccctgctcga aatcttccag catatccaat tcaaagcggc tgaagcccgc
     6481 tttttcgcgc gcttcgatgt tcacatagcc gcggaagata aacatatcgt aacgggcaat
     6541 cagactgcgg aacagggtaa tcggttccaa accgcgttcg cggcagaggt gttgatacca
     6601 atggttgccg atggcgacat gacccacttc gtcgcggtaa atgatgtcca atacgccgca
     6661 ggtttccgaa tcgccgcgct gcgccacctt cgcgcgtatc cccggcgtaa cgtccagccc
     6721 gcgcgcttcc aacacgcgcg gtaccaacgc catacgcaac agcgggtcgt aggcggtttt
     6781 gtacgccata tcccacaaat ggttgtgcgc ctcgaaactg ccgtaatcga agccgaaagc
     6841 gcgcaatctg tcgcgcatca ggcggaaatg gtacacctct tccttcgcca ctttcaccca
     6901 gtcgcggaca aactgaaacg gcagcgtgcg gaaacggtat gccgcgtcca aagctagatt
     6961 gacggcgttg aattcgatat gcgcaatcgc gtgcagcatc gccgcatagc cttctgccgt
     7021 gttcattttg cgcggggtca gttgtgacgg cgcgaccaaa accggcttgt ccggccgccc
     7081 tgcgcggggg aaatccagcg gcggcgtgtt tgtttcagca ccgtccatgt tctgaacggc
     7141 ggcaaacgcc tcatccgtca gccgtccttt ttcatctggg tcgcccgaaa gcagggcgcg
     7201 ttccagcaaa gcataaatat cgagtttcat ctcaagtccg ccgtgttcgg aaaacaaata
     7261 ttatagcgtt ttaaaaaaac aagatgaggc atataatctc cgcgattcgg cattccgcgc
     7321 ccaaaccgtc aaatatagtg gattaacaaa aacc
//
LOCUS       DAXIFD010000099         7288 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.099, whole genome shotgun sequence.
ACCESSION   DAXIFD010000099 DAXIFD010000000
VERSION     DAXIFD010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7288
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.099"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(271..1189)
                     /locus_tag="ACFOCN_001431"
                     /pseudo
     CDS             complement(271..1189)
                     /locus_tag="ACFOCN_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240797.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            1362..2162
                     /locus_tag="ACFOCN_001432"
     CDS             1362..2162
                     /locus_tag="ACFOCN_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6970565.1"
                     /translation="MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSG
                     KTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFD
                     NIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALD
                     PEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSVMVTHDIEKSLEIVDQVIFLAH
                     GEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDLLG"
     gene            2211..2987
                     /gene="mlaE"
                     /locus_tag="ACFOCN_001433"
     CDS             2211..2987
                     /gene="mlaE"
                     /locus_tag="ACFOCN_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HFC6970566.1"
                     /translation="MNFIRSVGAKTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVR
                     QVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLA
                     AILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIF
                     NVAGIFGAYLVGVTWLGLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQ
                     GFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD"
     gene            3038..3532
                     /gene="mlaD"
                     /locus_tag="ACFOCN_001434"
     CDS             3038..3532
                     /gene="mlaD"
                     /locus_tag="ACFOCN_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HFC6970567.1"
                     /translation="MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVY
                     ADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQIL
                     TSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
                     KAAE"
     gene            3569..4159
                     /locus_tag="ACFOCN_001435"
     CDS             3569..4159
                     /locus_tag="ACFOCN_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HFC6970568.1"
                     /translation="MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKS
                     GDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGT
                     MLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAI
                     EGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK"
     gene            4216..4494
                     /locus_tag="ACFOCN_001436"
     CDS             4216..4494
                     /locus_tag="ACFOCN_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HFC6970569.1"
                     /translation="MHTELNNGTLHISGDITVKTLTGEAFERFQQQCRLKETIAVDFG
                     GVKRADSACVSLLLEVLRGCKGSVRLTGIPESVRALSELYEIKDWLKS"
     gene            4491..5318
                     /locus_tag="ACFOCN_001437"
     CDS             4491..5318
                     /locus_tag="ACFOCN_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HFC6970570.1"
                     /translation="MKKTAYAFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQAD
                     RYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGIN
                     TTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGIT
                     SVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRA
                     RQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP"
     gene            5443..5805
                     /locus_tag="ACFOCN_001438"
     CDS             5443..5805
                     /locus_tag="ACFOCN_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ"
                     /protein_id="HFC6970571.1"
                     /translation="MYEVNRSVFVLIPLEPFWNWLQTLPGNHLDGLTLEDIQADANSY
                     LVRPCETADEVWDEIEARFEDIFAAELADWCEDEREWPALDADIFNEWFDIQLSTVIT
                     DLEHEPLAREAFQPINLN"
     gene            5805..6188
                     /locus_tag="ACFOCN_001439"
     CDS             5805..6188
                     /locus_tag="ACFOCN_001439"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6970572.1"
                     /translation="MKLTVRNYHLDGYGHVNNARYLEFFEEARWAFFEERGLLHELAG
                     LILIVARIDIRYSRPAVEGDVLQFSCRLKTPGTRRIVLTQTITLPNGKTAAEADITLM
                     PVHAATQRTVSLPATLARALEALSE"
     gene            6185..6673
                     /locus_tag="ACFOCN_001440"
     CDS             6185..6673
                     /locus_tag="ACFOCN_001440"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin family protein"
                     /protein_id="HFC6970573.1"
                     /translation="MKKILTAAVVALIGILLAIVLIPDSKTAPAFSLPDLHGKTVSNA
                     DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVK
                     DYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAL
                     AQ"
     gene            complement(6755..6883)
                     /locus_tag="ACFOCN_001441"
     CDS             complement(6755..6883)
                     /locus_tag="ACFOCN_001441"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HFC6970574.1"
                     /translation="MAGVTVGRGSVVGAGAVVTKDIPPYSLAAGNPAVVKKNLPEG"
     gene            complement(6889..7269)
                     /locus_tag="ACFOCN_001442"
     CDS             complement(6889..7269)
                     /locus_tag="ACFOCN_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-o"
                     /protein_id="HFC6970575.1"
                     /translation="MGSKFFFLLLRFAGSGLPPSHMRGIGIVGRRVRGFLARRVSPHI
                     GRGVNIERGAYVFPDTVLGDGSGIGANCEICRGLVVGKNVMMEPECLFYSNNHKFDRS
                     KNALRATRKSVRLRWRTMSGRGTG"
BASE COUNT         1683 a         2111 c         1846 g         1648 t
ORIGIN      
        1 ttcaatcaat actgcctctt caatggtgtt atctaacttt ttgattttac atttatataa
       61 catttatctt gcctttggat aaattgtttt gttttttgga ttgttattca aagttctcta
      121 aaagtctttt cctgattttg tatgtatcgt ggtaatacta ccattttcat tggttccaac
      181 aaaaataaat ttagattgac ctttggaatc agtacccaaa aactgaacat atccagacat
      241 gcggatttcg ggttttaaat caaatgcggc ttatcggttt tcttttttgg tttccgccgg
      301 cgtgctgccg aaatattgcc tgaatgcctg agtaaagctg gaaacgtggc ggtagccgca
      361 taaaatatgc ggtttcgcct atgcttttgc ccccgttttg caacaggtag agcgcgtgct
      421 gcatttgttt gtggtgcagc cactcgcttg cggtaatacc gaaatggtcg cgcatacggc
      481 gttgcagcgt cctttcactg atgttcagcg cgtctgtcag ccggttgact tggtgtgcgc
      541 cgtcggcaaa cgcggcattt agggtgcggc tgaagtcttc agacggcata gcgtctgctt
      601 ccgccgtttg ccccgccgcc ggcccgatgc cgtctgaaac cgtgtcccac aagtccgaca
      661 gcagccgcaa cacgtccgcc tcgcggcgca atgtttcgcc caaatgcccc tttgggacgg
      721 ctttcaggca ggatgccgcc aagccgcgca ggttcggggg caaatcccat atcctgaccg
      781 gttcgcggta aagcaggggt gcgaaacgcg cgtattccgg acgcagcagc cattgttcca
      841 tacctttaat ggtcattttg accgttttgc cgcctcggta aagatagcgg ctgaacagga
      901 cttcttcccc gacagcaatt aggacaatct tgccgccgtc cgcatcgatt tggaagcggc
      961 agcggttgat gccgaagtcc aaactgcctt ccagcaagag cacgaacgac acataaggtt
     1021 cggcgaggcg gctgctgcaa aaatcacacc gtgccgttac tgtgccgccg tggatggaaa
     1081 tgccgttgga caaagtatcg aaacggtagc tgccctccac atagctgccg ccgccgcttt
     1141 tgactagatt gacgaaccgg ctgctgttca aatgttctgc tttttccata gttttctgat
     1201 aaaggttatc atttgaaaga taacattttt cgccacagca aacaatccgc cgccgacaac
     1261 ggcattttca caacatttac cgtccgtatg ccgtctgaaa attgcccgtc ttcccgataa
     1321 gccttaaaat acacgccgtc aaacctaccg tccgtccgta catgagccca tcccccttta
     1381 tcgaaatgaa agacgtcgcc ttcgcgtatg gcgaccgccc gattctgaag aacatcaatt
     1441 tcagcattcc gcaaggcaat tttgctgccg taatgggcgg ttcgggcagc ggcaaaacca
     1501 cgctgatgcg actgattaca ggacagattc gtccgcagtc cgggcaggtt ttgattgaag
     1561 gacgggattt ggcgggcttt tcggctgacg agttgtatga acaccgccgc cgtatgggcg
     1621 tattattcca acacggcgcg ctgtttaccg atttgtcggt attcgacaat atcgcttttc
     1681 cgatgcgcga actgacgcgc ctgccggaag cggtgattcg agatttggtt ttgttgaaac
     1741 tgaacgcggt cggtttgcgc ggcgtggaaa acctgatgcc gtccgagttg tccggcggga
     1801 tgtcgcgccg cgtcgcgctt gcccgcacga ttgcgctcga ccctgaaatt atgttgtacg
     1861 acgaaccgtt taccggcctc gatccgattt ccttgggcgt gattgcccac ttgatcagcc
     1921 gcgtcaataa ggctttgcgt tcgaccagcg ttatggtaac gcacgacatt gaaaaatctt
     1981 tggaaatcgt cgatcaggtg attttcttgg cgcacggcga aattatgttc tccggctcgc
     2041 cgcaggaaat gcgcgaactg gattcgcctt gggtgcgcca gtttgtcggc gggctggcag
     2101 acggccccgt agcataccgt tatccggcgc aaacgtcgtt gcagcaggat ttgctcgggt
     2161 aaattgagcc ggtgccgtct gaaaccgttg aaccttacat atagaaattt atgaacttta
     2221 tccgttccgt cggggcgaaa accctcggcc ttattcaatc cctcggcagt atcacgctgt
     2281 ttctgctgaa cattctggcg aagtccggta cggctttcgt ccgtccgcgc ctgagcgtgc
     2341 gccaagtgta tttcgccggc gtgctgtcgg tgctgattgt tgccgtttcg gggctgttcg
     2401 tcggtatggt tttgggtttg cagggctata cgcagttgtc gaaattcaaa tccgccgata
     2461 ttttgggcta tatggttgcg gcttcgctgt tgcgcgaact gggtccggta ttggcggcga
     2521 ttctgtttgc cagcagcgcg ggcggtgcga tgaccagcga aatcggtctg atgaaaacga
     2581 ctgaacagct cgaagcgatg aatgtgatgg cggtaaaccc cgtcgcccgc gtggttgcgc
     2641 cgcgcttttg ggcgggcgtg ttttccatgc cgcttttggc ttcgattttc aacgtggcgg
     2701 gtattttcgg cgcgtatttg gtcggtgtaa cctggctggg cttggacagc ggcattttct
     2761 ggtcgcaaat gcagaacaac atcacgatac attacgatgt aatcaacggt ctgatcaaat
     2821 ccgccgcgtt cggcgtggcg gtaacgctga ttgccgtgca tcagggcttc cactgcgtcc
     2881 cgacctcgga aggcattttg cgcgccagca cgcgcacggt ggtttcgtcc gccctgacga
     2941 ttttggcggt cgattttata ttgaccgcgt ggatgtttac agattgacag ggcgtctgaa
     3001 gacgaaacgc ggaacatcgg atattcaagg aactttaatg aaaaagaaca tattggaatt
     3061 ttgggtcgga ctgttcgtcc tgattggcgc ggcggcggtc ggctttctcg ctttccgcgt
     3121 ggcgggcggt gcggcgttcg gcggttcgga caaaacttac gccgtttatg ccgatttcgg
     3181 cgacatcggc ggtttgaagg tcaatgcccc cgtcaaatcc gcaggcgtat tggtcgggcg
     3241 cgtcggcgct atcggacttg acccgaaatc ctatcaggcg agggtgcgcc tcgatttgga
     3301 cggcaagtat cagttcagca gcgacgtttc cgcgcaaatc ctgacttcgg gacttttggg
     3361 cgagcagtac atcgggctgc agcagggcgg cgacacggaa aaccttgctg ccggcgacac
     3421 catctccgta accagttctg caatggttct ggaaaacctt atcggcaaat tcatgacgag
     3481 ttttgccgag aaaaatgccg acggcggcaa tgcggaaaaa gccgccgaat aaacgtatgc
     3541 catcatattc aaactaggac acttaatcat gaaaaaatcc tccctcatca gcgcattggg
     3601 catcggtatt ttgagcatcg gcatggcatt tgccgcccct gccgacgcgg taaaccaaat
     3661 ccgtcaaaac gccactcaag tattgagcat cttaaaaagc ggtgatgcca acaccgcccg
     3721 ccaaaaagcc gaagcctatg cgattcccta tttcgatttc caacgtatga ccgcattggc
     3781 ggtcggcaac ccttggcgca ccgcgtccga cgcgcaaaaa caagcgttgg ccaaagaatt
     3841 tcaaaccctg ctgatccgca cctattccgg cacgatgctg aaattaaaaa acgccaacgt
     3901 caacgtcaaa gacaatccca tcgtcaataa aggcggcaaa gaaatcatcg tccgcgccga
     3961 agtcggcgta cctgggcaaa aacccgtcaa catggacttc accacctacc aaagcggcgg
     4021 taaataccgt acctacaacg tcgccatcga aggcgcgagc ctggttaccg tgtaccgcaa
     4081 ccaattcggc gaaattatca aagcgaaagg cgtggacgga ctgattgccg agttgaaggc
     4141 taaaaacggc agcaagtaat ccataagcca tgccgccaga ctgaagatgg catggatttt
     4201 ttcctaccga acactatgca tacagaactc aacaacggaa cactgcacat cagcggcgac
     4261 atcaccgtca aaaccctgac cggggaggct tttgagcgtt tccagcagca atgccgtctg
     4321 aaagaaacca ttgccgtcga tttcggcggt gtcaaacgtg ccgattccgc ctgcgtgtcg
     4381 ctgctgctcg aagtgctgcg cggctgcaaa ggcagcgtca ggctgaccgg cattcccgaa
     4441 tccgtgcgcg cgctgtccga actgtacgaa atcaaagact ggctgaaatc atgaaaaaaa
     4501 ccgcctatgc cttcctcctg ctgatcgggt tcgcttccgc ccctgcattt gccgaaaccc
     4561 gccccgccga cccttatgaa ggctacaacc gcgccgtttt caaattcaac gaccaagccg
     4621 accgctacat tttcgcccct gccgcgcgcg gctaccgcaa agttgcgccg aaacccgtcc
     4681 gcgccggcgt gtccaatttt tttaataacc tgtgcgacgt ggtcagcttc ggcagcaata
     4741 tcttgcgctt ggacatcaaa cgcgcaagcg aagaccttgt ccgtgtcggc atcaacacca
     4801 ctttcggttt gggcgggctt atcgacatcg ccggcgcggg cggcattccc gacaataaaa
     4861 acaccttggg cgacacgttt gcttcgtggg gatggaaaaa cagcaattat ttcgtgttgc
     4921 ccgtcttagg gccgtccacc gtccgcgacg cgctcggcac gggtattacc tccgtttatt
     4981 cgcccaagaa tatcgtcttc cgcacccctg tcggacgctg gggcacgact gccgtatccg
     5041 ccgtcagtac gcgcgaaggc ctgctcgatt tgaccgacag cctggacgaa gccgccatcg
     5101 acaaatacag ctacacgcgc gacctctata tgaaagtccg tgcgcggcag accggtgcaa
     5161 cacctgccga aggtacggaa gataacatcg acatcgacga attggtcgaa agtgccgaaa
     5221 ccggcgcggc ggaaactgcc gttcaagaag attccgtatc cgaaacacag gcagaagcag
     5281 caggggaagc cgaaacgcaa cctggaacac aaccttaaag ccatgccgtc tgaaaatccg
     5341 tgttcggacg gcattccctt ctgtcggaac ggacagtccg aaaccacaga ttgggctata
     5401 atctcttttt tgcgcatacc gcgcgacagc aaaggaaaaa ccatgtacga agtcaaccgc
     5461 agcgtattcg tcctcatccc tttagaacct ttttggaact ggctgcaaac cctgccgggc
     5521 aaccacctcg acggactgac tcttgaagac atccaagccg acgccaattc ctaccttgtc
     5581 cgcccgtgcg aaaccgccga cgaagtatgg gacgaaatcg aagcccgttt tgaagacatt
     5641 ttcgccgccg aacttgccga ctggtgcgaa gacgaacgcg agtggcctgc gctcgatgcc
     5701 gacattttca acgaatggtt cgacatccag ctttctaccg tcatcaccga cctcgaacac
     5761 gaaccgcttg cccgcgaagc cttccaaccc atcaacctga actgatgaag ctgaccgtcc
     5821 gcaactacca tctcgacggc tacggccatg tcaacaatgc gcgctacctc gaatttttcg
     5881 aagaagcgcg ctgggcgttt tttgaagaac gcggactgct gcacgagttg gcaggcctca
     5941 tactgattgt cgcccgcatc gacatccgat acagccgccc cgccgtcgaa ggcgacgtat
     6001 tgcagttttc atgccgcctg aaaacccccg gcacgcgccg tattgtgctg acccagacga
     6061 ttacactgcc aaacggcaaa accgccgcag aagccgacat caccctgatg cccgtccacg
     6121 ccgccacaca acgcaccgtc agcctgcccg ccacccttgc ccgcgcattg gaagccttgt
     6181 ccgaatgaaa aaaatactca ccgccgccgt cgtcgcactg atcggcatcc tccttgccat
     6241 cgtcctcatc cccgacagca aaaccgcgcc cgccttctcc ctgcccgacc tgcacggaaa
     6301 aaccgtttcc aacgccgacc tgcaaggcaa agtaaccctg attaattttt ggtttccctc
     6361 ctgtccgggt tgtgtgagcg aaatgcccaa aatcattaaa acggcaaatg actataaaaa
     6421 caaaaacttc caagtccttg ccgtcgccca gcccatcgat ccgatagaaa gcgtccgcca
     6481 atatgtcaaa gactacggtt tgccgtttac cgtcatgtat gatgcggaca aagctgtcgg
     6541 acaggcgttc ggcacacagg tttatccgac ttccgtcctt atcggcaaaa aaggcgaaat
     6601 cctcaaaacc tacgtcggcg aacccgattt cggcaaactc taccaagaaa tcgataccgc
     6661 gctggcacaa tagcgatgcc gtctgaaacg caaaaaaaca gaaacgatgt tcctgttttt
     6721 tcagatcatc cgccccgaca cgttcagacg gcattcaacc ttccggcaga ttctttttca
     6781 ccactgccgg attgcctgcc gccaaagagt agggcggaat gtcttttgta accaccgcgc
     6841 ctgcgcccac gaccgaaccg cgtccgacgg ttacgcccgc cattacaatc accctgtgcc
     6901 ccggccagac atcgtcctcc aacgtaatcg gacggatttc cgtgtagccc tcaaagcgtt
     6961 ttttgaacgg tcaaacttgt ggttatttga ataaaacaga cattccggct ccatcatcac
     7021 atttttgccg accaccagcc cacggcagat ttcacagttt gccccgatgc ccgagccgtc
     7081 gcccaaaacc gtatccggaa acacatacgc cccgcgttcg atattgaccc cgcgtccgat
     7141 atgcggagaa acccgccgcg ccaaaaaacc gcgcacccgt ctgccgacga tgccgatgcc
     7201 gcgcatatgc gacggcggca accccgaacc ggcaaaacgc agcagcagga aaaagaattt
     7261 tgatcccatc aaacctccct caaaagaa
//
LOCUS       DAXIFD010000100         7137 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.100, whole genome shotgun sequence.
ACCESSION   DAXIFD010000100 DAXIFD010000000
VERSION     DAXIFD010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7137
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.100"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..99
                     /locus_tag="ACFOCN_001443"
                     /pseudo
     CDS             1..99
                     /locus_tag="ACFOCN_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(120..1034)
                     /locus_tag="ACFOCN_001444"
     CDS             complement(120..1034)
                     /locus_tag="ACFOCN_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6970576.1"
                     /translation="MDAVQLKSFVAVAHEGNLTQAAKRLFLSQPAVSAQIKALEEYVG
                     TPLFRRTGKGMVLTRAGEILLPEAESLLQYKHKLEHFAKTLAGDYSEETSLGIIHPID
                     SAKLVALTDNIGQTAPKTRLHIQYGMSGEILSRIQHKTLHGGFILGNAAQRGIRSVFL
                     QNLTYALICPQSQYPHLTRSLPQSLQECVWIEMSGVSGSRKHLHQFWRSNRLSPKKQI
                     LCDYPQTIIDLVAGGIGVAMVPGNKAEAAAKEGAGVAIIESCRHSMPLNFIYAEEYED
                     NPHVSLLLECIEKVWGVQAVQPPVVSDN"
     gene            1290..2759
                     /locus_tag="ACFOCN_001445"
     CDS             1290..2759
                     /locus_tag="ACFOCN_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3360 family protein"
                     /protein_id="HFC6970577.1"
                     /translation="MEKHNGTYRDLHRPASEFATRDEYLEHELQIMQPKRWRPNLPFR
                     DYRFEWEDLIPAIAGTIGKVVMVGAVAAAFAAPLGLPDSFVLENVRYELLIAAAFILL
                     VSGFFLPGANLPGTHGPLIPMIPIVVSAGGHPLAFGISIAVLGLLMALFRGGSIMAKL
                     TSNGVCGGLLLYLGFIGTTGQVKKLFSWAGGFNMPYIAFTVIIVTIVMYALLEHWKKR
                     WLAVPLGCLIAGVVAFALGAPFEFHTAPGLPPMSPAYWWGENSGWHLGLPTAESFLVV
                     FPFAVLAVAMWSPDFLGHQVFQKISYPEKTDKVLMNIDDTMTSCSVRQAVGSILGGAN
                     FTSSWGTYIVPASIAKRPIPGGAVLTAVLCIIAGLWGYPMDLAIWQPVLSVALVVGVY
                     LPLLEAGMEMTRKGKTTQSAAIVVFSSALVNPVFGWALTMLLDNLGLIGCKERSAQLG
                     FAGRVLIPAVGFLILCVAMGAVGMLPGIPPFLEHFKSLG"
     gene            3011..3382
                     /locus_tag="ACFOCN_001446"
     CDS             3011..3382
                     /locus_tag="ACFOCN_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970578.1"
                     /translation="MNKTLSILPVAILLGGCAAGGGNTFGSLDGGTGMGGSIVKMAVG
                     SQCRAELDKRSEWRLTALAMSAEKQAEWENKICACVAQEAPERMTGNDVMQMLAPSTR
                     NQALAALTAKTVSACFKHLYR"
     gene            3455..4864
                     /gene="thrC"
                     /locus_tag="ACFOCN_001447"
     CDS             3455..4864
                     /gene="thrC"
                     /locus_tag="ACFOCN_001447"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HFC6970579.1"
                     /translation="MKYISTRGETAHKPFSEVLLMGLAPDGGLMLPEHYPQIGRETLD
                     KWRGLAYPELAFEIMRLFVTDIPEDDLRDILNRTYTEAAFGTKEITPVRTLSDGIKIQ
                     ALSNGPTLAFKDMAMQFLGNAFEYVLNKEGKKLNILGATSGDTGSAAEYALRGKKGVN
                     VFMLSPDGKMSAFQRAQMYSLQDGNIHNIAVKGMFDDCQDIVKAVQNDAAFKEKYHIG
                     TVNSINWGRIVAQVVYYFAGYFKATQSNDEQVSFCVPSGNFGNVCAGHIAKQMGLPIR
                     RLIVATNENDVLDEFFKTGAYRPRNSAHTYVTSSPSMDISKASNFERFVFDLMDRDPQ
                     EINTLWTEVAAGKGFDLQFALDKVGGKYGFTSSKSTHADRLATIKQVYEQDQELIDPH
                     TADGVKVAREVREEGETVVCLETALAAKFDATIREAVGDAAIPRPAALEGLENLPQRV
                     QTVPNSADAVKGIIEQTLA"
     gene            4910..5704
                     /locus_tag="ACFOCN_001448"
     CDS             4910..5704
                     /locus_tag="ACFOCN_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970580.1"
                     /translation="MTLPMQETRFSILLDELAAKQKAAIAPHLLADGSKVWIRKAGRH
                     NARWRYALLGMVARYLKLGVLKPVPSLGGEPAIATESKRLYELRAARIAVPELLAVRK
                     NALMFGNLEGIPLDTQIRQEAEAGKADAWLAGLEAIARVHKKQQFLSQAFARNMMSDG
                     KNISFLDFEDDPSEVLTIAQCQARDWLCYIHSTALILKNGGLLEAAAEKWGGVLSDQP
                     AEIQKLIAATVKPILPIRRLEHPRWGRDALRLAASISLISLADMPP"
     gene            5892..6668
                     /locus_tag="ACFOCN_001449"
     CDS             5892..6668
                     /locus_tag="ACFOCN_001449"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6970581.1"
                     /translation="MAAFNTQKVLSVHHWTDAYFTFTCTRDESLRFENGQFVMVGLMV
                     DGKPLMRAYSVASANWEEHLEFFSIKVQDGPLTSRLQHLKVGDDVLISKKPTGTLVAG
                     DLNPGKHLYLLSTGTGIAPFLSITKDPEIYEQFEKIILVHGVRYKKDLAYYDRFTKEL
                     PEHEYLGDLVKEKLIYYPIVSREEFEHHGRLTDLMVSGKLFEDIGLPKINPQDDRAML
                     CGSPAMLKDTCKVLDDFGLTVSPKTGVRGDYLIERAFVDQ"
BASE COUNT         1728 a         1774 c         1909 g         1726 t
ORIGIN      
        1 ggcatttcca aagggcattt taagccgtat ttgagagaat gcggatggcg ttttcagtgt
       61 tttcagcgtg ataaaattca aatttctatt ttaaaacaat cagcaaagca ggatttattt
      121 cagttgtccg agacaacggg cggctgcacc gcctgcactc cccatacttt ttcaatgcac
      181 tcgagcagga gtgagacgtg gggattatcc tcgtattctt ccgcataaat gaaattgagc
      241 ggcatactgt ggcggcacga ttcgataata gccacgcccg cgccttcttt tgccgccgct
      301 tcggctttgt ttcccggcac cattgccaca cctataccgc ctgcaaccaa atcgataatg
      361 gtttgggggt agtcgcacaa gatctgtttt ttgggtgaga gccggttgct gcgccaaaac
      421 tggtgcaggt gcttcctact tccggacacg cccgacattt ctatccatac gcattcttgc
      481 aggctctgcg gaagggagcg ggtcagatgg ggatattggc tttgcgggca aatcagcgcg
      541 taggtcaggt tttgcaggaa tacgctgcgg atgccgcgtt gggcggcgtt gccgagtata
      601 aagccgccgt gcagggtttt gtgttggatg cgcgagagga tttcgccgct cattccgtat
      661 tggatgtgca ggcgcgtttt gggggctgtt tgaccgatat tgtccgtcag cgcgacgagt
      721 tttgccgaat cgatggggtg gataatgccc aaactggtct cttccgaata atcgcctgcc
      781 agcgttttgg caaaatgctc cagcttgtgt ttgtattgca gcagggattc cgcttcgggc
      841 aacagtattt cgcccgcccg cgtcaatacc atgcctttcc ccgtgcgcct gaacagcggc
      901 gtgccgacat attcttcaag ggctttaatt tgggcggaaa cggcaggctg ggaaaggaaa
      961 agtcgtttgg cggcttgggt aaggttgccc tcgtgcgcga cggcgacaaa tgattttaat
     1021 tgtacggcat ccatatatcc ctccttgtgc ggatgttttc tatatttgtg caatcgaaat
     1081 cttttaggtg gattgttgct gaaaattaac tttttaatca agtggtttgt aaattgtatc
     1141 agttttccgg atgatggtta tcaaaaaaaa agattggttt tattgcctgt ttgggcttta
     1201 aatggggtta cggcttccga acgcagcccg tatcaaaaag aaaagtcatg cgcccctttt
     1261 acgaggcgcg atatataagg aggaaggtta tggaaaaaca taatgggact tatcgggatt
     1321 tgcaccgtcc ggcttcggaa tttgcgacgc gggacgaata tttggaacat gaattgcaga
     1381 ttatgcaacc aaaacgctgg cggcccaacc tgccctttcg cgattaccgc ttcgagtggg
     1441 aggatttgat tcctgcgata gcgggaacga ttggaaaagt ggtgatggtg ggggcggtgg
     1501 cggcggcgtt tgccgcacct ttggggctgc ctgacagctt tgtactggaa aatgtgcgct
     1561 atgagctttt aatcgccgcc gcgtttatct tattggtatc gggctttttt ctgcccggcg
     1621 ccaacctgcc cggtacgcac gggccgctga ttccgatgat tcccatcgtt gtgtcggcag
     1681 gcgggcatcc tttggcgttc ggcatttcga ttgcggtttt aggtctgctg atggctttat
     1741 ttcgcggcgg cagtattatg gcgaagctga caagcaacgg cgtatgcggc ggattattac
     1801 tctatttggg ctttatcggc acgacggggc aggtaaaaaa attgttttcg tgggcaggcg
     1861 gttttaatat gccctacatc gcttttaccg tcattattgt aacgattgtg atgtacgctt
     1921 tgttggagca ttggaaaaaa cgctggttag ccgtgccttt gggatgcttg attgccggtg
     1981 tggtggcatt tgcattgggt gcgccgtttg agtttcacac cgcccccggc ctgcctccaa
     2041 tgagtcctgc ttattggtgg ggtgaaaaca gcggctggca tctagggttg ccgacggcag
     2101 aaagtttttt ggttgtcttt ccatttgcgg tattggctgt tgcaatgtgg tcgcccgatt
     2161 ttttaggaca tcaagtgttc caaaaaatca gctatccgga aaaaaccgat aaggtattga
     2221 tgaatataga cgacaccatg acaagttgtt ctgtccgtca agcagtgggt tctattttag
     2281 ggggtgcaaa ttttacctct tcttggggaa cttatatcgt accggcatcg attgccaaac
     2341 gccccattcc gggcggtgcg gttttaacgg cggttttatg tattatcgcc gggttatggg
     2401 gctatccgat ggacttggcg atttggcagc cggtattgag cgtagccttg gtcgtaggcg
     2461 tatacttacc gcttttggaa gcgggcatgg aaatgacgcg caaaggcaaa accacccaat
     2521 ccgccgccat cgtggtgttc tcttccgcct tggtcaatcc ggttttcggc tgggcgttga
     2581 cgatgctgtt ggataatttg ggcttaatcg gctgcaaaga gcgcagtgcg caattaggtt
     2641 tcgccggacg cgtgttgata cccgcagtag gtttcttgat cttgtgtgtg gcgatgggtg
     2701 cggtcgggat gctgcccggt atcccgccgt ttttggaaca cttcaaatct ttgggctagg
     2761 ctgaaatcag aaatgccgtc tgaaccgctt tcagacggca tttttgcaaa caggcaaaat
     2821 gacggcggcg ggatttttta ttttcccgat tgaagtataa tgttgccggg cttcaaccgg
     2881 atattcaaaa cggtttgttc caacactcgg aacggcgcat aaaacgccgc ctttcgcgtt
     2941 atcccgaacg gggcggctaa tcagattcta tcgccataaa aggcggggtt tcaaccgaaa
     3001 aggaattgag atgaataaaa ccttgtctat tttgccggtg gcaatcttac tcggcggctg
     3061 cgccgccgga ggcggtaaca cattcggcag cttagacggt ggcacaggca tgggcggcag
     3121 catcgtcaaa atggcggtcg ggagccaatg ccgtgcggaa ttggacaaac gcagcgaatg
     3181 gcgtttgacc gcgctggcga tgagtgccga aaaacaggcg gagtgggaaa acaagatttg
     3241 cgcttgcgtc gcccaagaag cacccgaacg gatgaccggc aacgatgtga tgcagatgct
     3301 ggctccgtcc acgcgcaatc aggcacttgc cgccctgacc gccaaaacgg tttccgcctg
     3361 cttcaaacac ctgtaccgct aaccttcttc agacggcatg aggcagatgc cgtctgaagc
     3421 cgttttcctg caatttcgac agacgagaaa aatcatgaaa tacatcagca cgcgcggcga
     3481 aaccgcacac aaaccgttca gcgaagtttt attgatgggg cttgcacccg acggcggcct
     3541 gatgctgccg gaacattatc cgcaaatcgg gcgggaaacc ttggacaaat ggcgcggttt
     3601 ggcttatccc gaattggcgt ttgaaattat gcgcctgttc gttaccgaca ttccggagga
     3661 cgatttgcgc gatattctga accgtactta cacggaagcg gcgttcggta ctaaggaaat
     3721 cacccccgtc cgcacgcttt cagacggcat caaaatccaa gccttgtcca acggcccgac
     3781 gctggcgttc aaagatatgg cgatgcagtt tttgggcaat gcgtttgaat atgttttaaa
     3841 caaagaaggc aaaaaactca atatcttggg cgcaaccagc ggcgatacgg gttcggctgc
     3901 ggaatatgcc ttgcgcggca aaaaaggtgt gaatgtattt atgctgtcgc ccgatggcaa
     3961 aatgagcgcg ttccaacgtg cgcagatgta cagcctgcaa gacgggaata tccacaatat
     4021 cgccgtgaag ggtatgtttg acgactgtca ggatattgtg aaggcggtgc aaaacgatgc
     4081 cgcgttcaag gaaaaatacc atatcggtac ggtcaattcg attaactggg gacgcatcgt
     4141 cgcgcaagtg gtttattact ttgccggcta tttcaaagcg acgcaaagca atgacgagca
     4201 agtcagcttt tgcgtgccga gcggcaactt cggcaacgtt tgcgcgggac atattgccaa
     4261 acagatgggc ttgcccatcc gccgcctgat tgtcgcgacc aatgaaaacg atgtgttgga
     4321 cgagtttttc aaaaccggcg cgtaccgccc gcgcaacagc gcgcatactt atgttacctc
     4381 cagcccatct atggacattt ccaaagcgtc caatttcgag cgtttcgtgt tcgacctgat
     4441 ggatcgcgat cctcaggaaa tcaatacgct gtggacggaa gtcgcggcgg gcaagggctt
     4501 tgacttgcag tttgccttag acaaagtcgg cggcaaatac ggctttacct ccagcaagtc
     4561 cacccacgcc gaccgcctcg ccaccatcaa acaggtttac gagcaagacc aagaactcat
     4621 cgacccgcac actgccgacg gcgtaaaagt cgcccgcgaa gtgcgcgaag aaggggaaac
     4681 ggtggtttgt ttggaaaccg cgttggcagc gaaattcgat gcgaccatac gcgaagccgt
     4741 cggcgatgcc gccattccgc gccctgccgc gctggaaggt ttggaaaacc tgccgcagcg
     4801 cgtgcaaacc gtgccgaaca gtgcggatgc ggtaaaaggc atcatcgaac aaacccttgc
     4861 ctgatgttcc gtgcaggggc actccgtccg aacttaagat tgaaagaaaa tgaccttacc
     4921 tatgcaggaa acccgttttt ccatactgct agacgaattg gcggcaaaac agaaggcagc
     4981 catcgccccc cacctgcttg ccgacgggag caaggtatgg atacgcaaag caggcaggca
     5041 caatgcgcga tggcgttacg cgctgctcgg tatggttgcc cgatatttga aactgggggt
     5101 gttgaagccg gttcccagcc tcggcggcga gcctgccatt gcaaccgaat caaaacgcct
     5161 gtacgaattg cgcgcggcga ggatagccgt tcccgaattg ctcgccgtca ggaaaaatgc
     5221 ccttatgttc ggcaatttgg aaggcatccc gctcgatacg caaatccgcc aagaagccga
     5281 agccggaaag gcggacgctt ggcttgccgg tttggaagcc attgcacgcg tgcataaaaa
     5341 acagcagttc ctcagtcagg cgtttgcgcg gaatatgatg tcggacggaa aaaacatcag
     5401 ctttctagat tttgaagacg acccttccga agtcctgacc atagcgcaat gccaagcccg
     5461 cgattggctc tgctacatcc attcgaccgc gctgatattg aaaaacggcg gactgctgga
     5521 agcggctgcg gaaaaatggg gcggcgtatt gtcggatcag cctgccgaaa tacaaaagct
     5581 gattgccgcc accgtcaaac cgatcctccc gatacgcagg ctggaacacc cacgctgggg
     5641 acgggacgca ctcaggctgg cagcctcgat ttccctgatt tcccttgccg atatgccgcc
     5701 ataagccgcc gcccgccccg cgatgccgtc tgaagccctt cagacggcat ataaccaacg
     5761 cgcatcaagc attgtcgcaa ccatccgttt cgtttagaat tttggcttta tcccgaatcg
     5821 ggcagacatt tccactctgc cgcacctccc gaacaagcac tatccatttc ttttactgac
     5881 aggaaaccca aatggcagca ttcaataccc aaaaagtatt gtccgtacac cactggacag
     5941 acgcatattt tacctttacc tgcacccgcg acgaatcgtt gcgctttgaa aacggacagt
     6001 tcgttatggt cggattgatg gtggacggca agccgctgat gcgcgcatac agcgtcgcct
     6061 ccgccaactg ggaagaacac ctcgaatttt tcagcattaa agtccaagac ggcccgctga
     6121 ccagccgcct gcaacacctc aaagtcggcg acgacgtgtt aatcagcaaa aaaccgaccg
     6181 gaactctggt tgccggcgac ctgaatccgg gcaaacacct ttacttgttg agcaccggta
     6241 ccggcatcgc ccctttcttg agcatcacca aagaccccga gatttacgag caatttgaaa
     6301 aaatcatcct cgtacacggc gtgcgctaca aaaaagattt ggcgtactac gaccgcttta
     6361 ccaaagaatt gcccgaacac gaatacctcg gcgacttggt taaagaaaaa ctgatttact
     6421 acccgattgt ttcccgagaa gaattcgaac accacggccg tctgaccgac ctgatggtaa
     6481 gcggcaaact gtttgaagac atcggcctgc ccaaaatcaa cccgcaagac gaccgcgcga
     6541 tgctgtgcgg cagccccgcg atgctgaaag atacctgcaa agttttggac gatttcggtc
     6601 tgaccgtctc tccgaaaacc ggcgtgcgcg gcgattacct gattgagcgc gcgtttgtgg
     6661 atcaataagc tgcttgaaaa tgccgtctga acggcatcag cgataaaaaa acccgaatcc
     6721 tgccaatcag gattcggggt ttttatagtg ggtaaaaatt agaaatgcac atttccgtca
     6781 ttccaacaca ggtgggaatc cggacttacc tgtttcatta tcgtttgaaa ataaaagaga
     6841 aaccaaacat atagattccc gcttgcgcgg gactgacgac ggtgttctgc gtagccaaag
     6901 cagaaaaaca tccttattgt catttcatca tgatataaca ataaggatgt taaaaattag
     6961 ttatcattat atgcatgata tataagaaaa attgtcccaa taagaaatgt tatgcagaaa
     7021 ataaaatgaa aaggatggtt ttcattgaaa atggttgttc tgccatcgtc atacacagaa
     7081 ccggtatttg gaaaaaaata atccatattg acatcattat tccatttatc gcataaa
//
LOCUS       DAXIFD010000101         7100 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.101, whole genome shotgun sequence.
ACCESSION   DAXIFD010000101 DAXIFD010000000
VERSION     DAXIFD010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7100
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.101"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..471)
                     /locus_tag="ACFOCN_001450"
     CDS             complement(<1..471)
                     /locus_tag="ACFOCN_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6970582.1"
                     /translation="MAGKAAKKAKRFILNTVIASQPASQPASQPASQLYTKLTRKRQE
                     IFFNQTLAFDEIDRLFDAKAFSKFSRHTADGKQAVGEIKRHSDGTPAENLIIKGNNLI
                     ALHSLATQFKGKVKLIYIDPPYYFVKKKQQDSFGYNTNFKLSTWLTFMKNRLSIA"
     gene            complement(362..829)
                     /locus_tag="ACFOCN_001451"
     CDS             complement(362..829)
                     /locus_tag="ACFOCN_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6970583.1"
                     /translation="MKADIQTELTQALLSHEKVWANEEKTILAKNILLDLVEKTDPAI
                     IGLLLGNDELKRHFFVEVNGVLVFKLQDFRFFLDKHSVNNSYTKYANRIGLTDGNRFL
                     KDSSDIVLDFPFKDCVLNGGQSSEEGEEIYFKHSNSQPASQPASQPASQPIIH"
     gene            complement(1120..2052)
                     /gene="truB"
                     /locus_tag="ACFOCN_001452"
     CDS             complement(1120..2052)
                     /gene="truB"
                     /locus_tag="ACFOCN_001452"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HFC6970584.1"
                     /translation="MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHT
                     GVLDPLATGLLPVCFGEATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARAD
                     ISLAEFQTACQALTGNIRQVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDI
                     AEFDAPKAVISVRCSKGTYIRTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEA
                     LANLNETERDSLLLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT
                     ENGRFVGLAEYQKEICRLKALRLMNTAVKNTGCV"
     gene            complement(2085..2456)
                     /gene="rbfA"
                     /locus_tag="ACFOCN_001453"
     CDS             complement(2085..2456)
                     /gene="rbfA"
                     /locus_tag="ACFOCN_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HFC6970585.1"
                     /translation="MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVE
                     VTRDYSHATVFYTILNQDAREITEEVLEHARGHLRSELAKRIKLFKTPELHFKYDESL
                     ERGLNLSALIDQVAAEKPVED"
     gene            2647..3891
                     /gene="clpX"
                     /locus_tag="ACFOCN_001454"
     CDS             2647..3891
                     /gene="clpX"
                     /locus_tag="ACFOCN_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HFC6970586.1"
                     /translation="MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHED
                     GNDGTPSESAGGEPEESGKLPTPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHP
                     KAGANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
                     IITKLLGKCDFDVEKAQRGIVYIDEIDKISRKGDNPSITRDVSGEGVQQALLKLIEGT
                     VASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSK
                     DENADITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVK
                     QYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLKGL
                     KKVVVGKAVIEEGREPELVFEP"
     gene            complement(3994..5190)
                     /locus_tag="ACFOCN_001455"
     CDS             complement(3994..5190)
                     /locus_tag="ACFOCN_001455"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HFC6970587.1"
                     /translation="MQNYLTPNFAFAPMIPERASGSRVWDTKGREYIDFSGGIAVNAL
                     GHCHPALVDALNAQMHKLWHISNIYTTRPAQELAQKLVANSFADKVFFCNSGAEANEA
                     ALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKYSKDYAPLPQGITHVP
                     FNDIAALEAAVGEQTCAVIIEPIQGESGILPATAEYLQTARRLCDRHNALLILDEVQT
                     GMGHTGRLFAYEHYGIVPDILSSAKALGCGFPIGAMLATEKIAAAFQPGTHGSTFGGN
                     PMACAVGSRAFDIINTPETLNHVREQGQKLQTALLDLGRKTGLFSQVRGMGLLLGCVL
                     DEAYRGRASEITAAALKHGVMILVAGADVLRFAPSLLLNDEDMAEGLRRLEHALTEFA
                     ATSDNP"
     gene            5594..6094
                     /locus_tag="ACFOCN_001456"
     CDS             5594..6094
                     /locus_tag="ACFOCN_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970588.1"
                     /translation="MNAMPQTAAQNETLHTCSIIVDDAQDFSPMLLDAGRDDTLISES
                     MIPQIRTVAALIAAERHDFSRSSPAEFTDAADFFAARILVLGVRRFHLDVSLLQILKT
                     ANSRARRFAEKHRLFFTPAQAELSLNKHKNRRLLTVETEHEVENKGNPVANSLAFVRK
                     LHTLPL"
     gene            6179..6733
                     /locus_tag="ACFOCN_001457"
     CDS             6179..6733
                     /locus_tag="ACFOCN_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970589.1"
                     /translation="MKKIIASALIATFALAACQDDTQARLEQQQKQIEALQQQLAQQA
                     DDTVYQLTPEAVKDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLVGAAAG
                     AFIGNALANKFTRAGNQDSPVARRARAAYHQSAHPNARTSRDLNTRSLRAKQQAAQAQ
                     RYRPTTRPPANYRRPAMRGFGRRR"
BASE COUNT         1727 a         1813 c         1852 g         1708 t
ORIGIN      
        1 ggcaattgat aaacgatttt tcataaatgt aagccaagta gataatttaa agttagtgtt
       61 ataaccaaaa ctatcttgtt gtttcttttt aacaaaataa taaggcggat caatataaat
      121 cagcttcact ttacctttaa actgcgtggc aagcgaatgc agggcaatca gattattgcc
      181 tttgataatg agattttcgg ctggtgtgcc gtctgaatgt cgtttgattt cgccaaccgc
      241 ttgtttgccg tctgcggtgt ggcgagagaa ttttgagaat gcttttgcgt caaaaagccg
      301 gtcaatttca tcaaaagcaa gcgtttgatt aaaaaagatt tcttgtcttt ttcgggttaa
      361 tttagtgtat aattggctgg ctggctggct ggctggctgg ctggctggct ggctggctat
      421 tactgtgttt aaaataaatc tcttcgcctt cttcgctgct ttgcccgcca ttcaatacgc
      481 aatctttaaa cggaaaatcc aacacaatat ccgaactgtc tttcaaaaag cggttgccgt
      541 ccgtcaaacc aatgcggttg gcgtattttg tgtaggaatt attgacgctg tgtttgtcca
      601 agaaaaaacg aaaatcctgc aatttaaaca ccaaaacacc attcacttcc acaaaaaaat
      661 ggcgttttaa ctcatcattc cccaataaca aaccgataat ggccgggtcg gttttttcca
      721 ccaaatccaa cagaatgttt ttggctaaaa tggttttttc ttcgttcgcc catacttttt
      781 cgtgtgatag cagggcttgg gttaattcgg tttgaatgtc tgccttcatc gttataaatc
      841 ctcatcagtc attttaatgt gccattcttg tgtaacggca aatggttttg caaataaata
      901 ctaataaaat caatcatttg ttatctttgc tgtttccggg ggcgttcgca aagttgcaat
      961 aagcggggtg ggtgtccgag tgtgtcgtga ttttgcggaa atatagtgga ttaacaaaaa
     1021 tcaggacaag gcgacgaagc cgcggacagt acaaatagta cggcaaggcg aggcaacgct
     1081 gtactggttt aaatttaatc cactatatca acacattatt caaacacagc ccgtattttt
     1141 aaccgccgtg ttcatcaggc gcaaggcttt cagacggcat atttcttttt gatattccgc
     1201 cagtccgaca aagcggccgt tttccgtgta aacgcgtacc ggcgtatcgg aaggcaggtc
     1261 ttcctcgaaa cgcggccgtt gcccgcattg gagcatatgg acggcataat cgtttaaaac
     1321 ggtttgggga aaatgggcaa ccaatacgtc gcagggcagc agcaagctgt cgcgttctgt
     1381 ttcgttcaaa tttgccaagg cttcgagcgt gtggctttgg gcgatggtaa agccggcggt
     1441 ttcggtgcgg cgcagggcgg tcaggtgggc gaacgtgccg atgtgtttgg cgatgtcttc
     1501 gctgagggtg cggatatagg tgcctttgct gcaacgcacg cttatcacgg ctttgggtgc
     1561 gtcaaattcg gcaatatcga tggcgtaaac ggtaatatcg cgcggcttgc gttcgatgac
     1621 gatgcctttg cgggcgtatt cgtacagcgg tttgccttcg tgcttgagcg cggaaaacat
     1681 tggcggcact tggcggatgt tgcctgtcag tgcttggcag gccgtctgaa attcggctaa
     1741 ggaaatatcg gcgcgggcgg tggcaatgat ttcgccttcg gcatcacccg tgctgctggc
     1801 ttcgccgagt ttcagcgtgg cggtgtaggc tttgtcggca tccagcaggt attgggcgaa
     1861 cttggtcgct tcaccgaagc agacgggcaa aagtccggtt gccaaagggt cgagcacgcc
     1921 ggtatgtccg gctttttcgg catgaaacaa acgccgcgct ttttgcagcg cggtgttgct
     1981 ggaaaggcct tcgggtttgt ccaagagcaa aacaccgttg acggcacgtt tttggggttt
     2041 gcctgtattc atggttcgat gttcggacgg catgggcata tccgtcagtc ttcaaccggt
     2101 ttttccgccg ctacttggtc gataagggcg gacaggttca aaccgcgttc caaagattcg
     2161 tcgtatttga aatgcagttc gggcgttttg aacagcttga tgcgtttggc caattcgctg
     2221 cggaggtgtc cgcgcgcgtg ttccagcact tcttccgtaa tttcgcgcgc gtcttggttt
     2281 aaaatggtgt agaacacggt ggcgtggctg taatcgcggg taacttcgac ttcgttgacg
     2341 gtaatgaagc cggcgcgcgg gtctttcagt ccggtacgga cgagttcggc aagctcgcgc
     2401 atgatttgtt ctttgacacg gtcttggcgg gcgtagccgc gttggggttt tctcatgaat
     2461 atcctcagat ttcagatttg gtttcagacg gcatttttgc cgccggggcg gttgcgaaag
     2521 ggcgtattat agcctaatcg gcgggatttt aaggtaatac attgataaga acggatatag
     2581 ttattatact tggcaacccg aacggcacgt gccgttttct gtaacgcata cattgtaaag
     2641 aaagccatgt ccaacgaaaa ccgtacctgt tccttttgcg gaaaatccaa atcacacgtc
     2701 aaacatttaa ttgagggcga aaacgccttt atctgtgacg aatgcgtctc aaactgtatt
     2761 gaaatattgc atgaagacgg aaatgacggc acaccttcgg aaagtgccgg aggggagccg
     2821 gaagaatccg gcaagctgcc cacgcccgcc gaaatcgtcg ccaacctcaa cgaccacgtt
     2881 atcggtcagg aacaagccaa gaaagccttg gcggtgtcgg tgtacaacca ttacaaacgc
     2941 ctgcgccacc cgaaagccgg agctaatgtc gaattgtcga aatccaacat cctgcttatc
     3001 ggcccgaccg gatcgggtaa aaccctgctg gcgcaatctt tggcgcgtaa actggacgta
     3061 ccgttcgtga tggcggatgc aaccacgctg actgaagcag gttatgtcgg cgaagatgtc
     3121 gagcaaatca tcaccaaact gttgggcaaa tgtgatttcg atgttgaaaa agcccagcgc
     3181 ggcatcgtct atatcgacga aatcgataaa atttcacgca aaggcgacaa tccgtccatc
     3241 acgcgcgacg tgtccggcga aggtgtgcaa caagccttgc tgaaactgat tgaaggtacg
     3301 gtggcaagtg ttccgcccca aggcggccgc aagcatccga atcaggaatt tatcaacgtc
     3361 gataccacca acatcctgtt tatctgcggc ggtgcgtttg caggcttgga aaaagtcatc
     3421 cgccagcgca ccgagaaagg cggtatcggt ttcggtgcgt ccgttcacag caaggacgaa
     3481 aatgccgaca ttaccaagct gttcggcatc gtcgaaccgg aagatttaat caaattcggt
     3541 ctgattccgg aattaatcgg acgtttgcct gtgattgcaa cgttagaaga actggatgag
     3601 gacgcgctga ttaatatttt gaccgagccg aaaaatgctt tggtcaagca gtatcaagcc
     3661 ttgttcggta tggaaaatgt cgaactggag tttgaagaag gcgcattgcg ttccatcgcg
     3721 cgtcaggcaa tggagcgcaa aaccggcgcg cgcggcctgc gttccatcgt cgaacgctgc
     3781 ctgttggata cgatgtaccg cctgcccgat ttgaaaggct tgaaaaaagt ggtggtcggt
     3841 aaggcagtca tcgaagaggg cagggaaccg gaattggtgt tcgagccctg atggcaaaca
     3901 aaaccgcttc ggaacgtcga accacgtttc cgaagcggtt ttttgttttt gatgccgtct
     3961 gaagccttcc cgccttcaga cggcatttga gttttacgga ttgtctgatg tcgcggcaaa
     4021 ttccgtcagc gcgtgttcca aacgtcgcaa accttccgcc atatcctcat cgttcaacag
     4081 tagcgaaggc gcgaaacgca atacgtccgc acccgcaacc aaaatcatca cgccgtgttt
     4141 caaggcggcg gcggtgattt cggatgcgcg tccgcgatag gcttcgtcca acacgcagcc
     4201 gagtagcagc cccatcccgc gaacttgtga gaacaagccc gttttcctgc ccaaatccag
     4261 caatgccgtc tgaagtttct gcccctgttc acggacatgg tttaaagttt cgggcgtatt
     4321 gatgatgtcg aatgcgcggc tgccgaccgc acacgccatc gggttgccgc cgaaagtcga
     4381 gccgtgcgtg cccggttgga aggcggcggc aatcttttct gtcgccagca tcgcgccgat
     4441 cggaaagccg cagcccaagg cttttgccga actcaaaata tcgggaacaa tgccgtaatg
     4501 ttcataggca aacagcctgc ccgtatgccc catcccggtt tgaacttcgt ccaaaatcaa
     4561 caacgcattg tgccggtcgc acagacggcg cgcggtttgc aaatattccg cagtggcggg
     4621 caggatgccg ctttcgccct gtatcggctc gatgatgacc gcgcaggtct gttcgccgac
     4681 ggcagcttcc agcgcggcaa tatcgttgaa cggaacgtgc gtaatgcctt gcggcagggg
     4741 tgcataatcc ttgctgtatt tcggctgacc gccgacggac acggtaaaca gcgtgcgtcc
     4801 gtgaaaactg ttgatacagg cgacgatttc gctttttcct ccgccgaaac ggtcgcgggc
     4861 gtatttcctc gccagcttca acgccgcctc attcgcttcc gcgcccgagt tgcagaaaaa
     4921 aaccttgtcg gcaaaactgt ttgcaaccaa tttttgcgcc aattcctgcg ccggacgcgt
     4981 cgtatagata ttggaaatgt gccacagctt gtgcatctgc gcgtttaaag catcgacaag
     5041 ggcagggtgg cagtgtccca gcgcattgac ggcgataccg cctgaaaaat caatatattc
     5101 acgccctttc gtatcccaaa cgcggctgcc tgaagcgcgt tcgggaatca tcggggcaaa
     5161 ggcgaaattg ggggtcagat agttttgcat aattgctcct gattgcggtt ttgctcggga
     5221 ttatgcaccg tttttcaaag cagataaagg gaaattgccg acaatatcgg gcagcggtaa
     5281 aaataaaccg aaatattttc aatcggatag atgaaaaatc aaaaaaattt cgataaaatg
     5341 cttgaggcgc ggcagcgttt tgatttagaa tctccccaat atttttatct tcagacggca
     5401 tttcatcatg caaggcaaaa aatttacaac cgcttattgc tattggtacc acacagacgt
     5461 gcggtacttt tttgcgcttg cttgaaatcc atcccatacg caaaacaggc cgctcgaaaa
     5521 cggggcggct tttttgttac cttcacacag gtcgcccgat tcggcaacac acgacagaat
     5581 caggaaaatg accatgaatg caatgcccca aaccgccgca caaaacgaaa ccctgcacac
     5641 ttgtagcatt attgtcgatg atgcacagga tttttccccc atgcttctcg atgcagggcg
     5701 ggacgacaca cttatcagcg aatcgatgat tccgcaaatc cgcactgttg ccgccctgat
     5761 agccgccgaa cggcacgact tcagccgcag cagccccgcc gagtttaccg atgccgccga
     5821 tttttttgcc gcacggattc tcgtattggg cgtgcgacgc ttccatctgg acgtatcgct
     5881 gcttcagatt ttgaaaaccg ccaacagccg cgcccgccgc tttgccgaaa aacaccgcct
     5941 gtttttcaca cccgcacaag ccgaattgag cctgaacaaa cacaaaaacc gccgcctgct
     6001 gaccgtagaa accgaacacg aagtcgaaaa caaaggcaac ccagtcgcca acagcctcgc
     6061 atttgtccgc aaactgcaca ccctgcccct gtaaacatca cgatttgtcg gcagaatgct
     6121 tgccaaaatt cccgacggcg atacaataaa accgattttc cacccaaaca ggacacacat
     6181 gaaaaaaatc atcgcctccg cgcttatcgc aacattcgca ctcgccgcct gccaagacga
     6241 cacgcaggcg cggctcgaac agcagcagaa acagattgaa gccctgcaac agcagctcgc
     6301 acagcaggca gacgatacgg tttaccaact gactcccgaa gcagtcaaag acaccattcc
     6361 tgccgaagca caggcaaacg gcaacaacgg gcaacccgtt accggtaaag acgggcagca
     6421 gtatatttac gaccaatcga caggaagctg gctgctgcaa agcctagtcg gcgcggcggc
     6481 aggcgcgttt atcggcaacg cgctggcaaa caaattcaca cgggcaggca accaagacag
     6541 tcccgtcgcc cggcgcgcgc gtgcagccta ccatcagtcc gcacatccca atgcgcgcac
     6601 cagcagggat ttgaacacgc gcagcctccg tgcaaaacaa caggcggcgc aggcgcagcg
     6661 ttaccgcccg acaacgcgcc cgcccgccaa ttaccgccgc cccgccatgc gcggtttcgg
     6721 cagaaggcgg taaatccggc gtgccaatgc cgtctgaagg gctttcagac ggcatttttg
     6781 catttgttag gggcattgtt atgttgccgt ttgattttta gacggcattt tgtttccaag
     6841 cgtttgatgt cgggatggca attctgattt acgtgcgttg gcagggcggc attgtcatgc
     6901 cgccgttggg ttttcagacg gcatcatatc gaaccgtcag accatagggc gagcattctt
     6961 gcccaccgtt gcaagggcgg gattgggtgg gcaggaatgc ccaccctgca tctgaaaccc
     7021 ttccgtgtca ttcccgtgca ggaaggaatc tagatatttg aatttacgga aattttcaat
     7081 cgttgccaaa gcggaaaagg
//
LOCUS       DAXIFD010000102         7052 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.102, whole genome shotgun sequence.
ACCESSION   DAXIFD010000102 DAXIFD010000000
VERSION     DAXIFD010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7052
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.102"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(86..955)
                     /locus_tag="ACFOCN_001458"
     CDS             complement(86..955)
                     /locus_tag="ACFOCN_001458"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HFC6970590.1"
                     /translation="MSANEYTQIGWIGLGQMGLPMVTRLLDGGIEVGVYNRSPDKTAP
                     ISAKGAKVYGNTAELVRDYPVIFLMVSDYAAVCDILNGVRDGLAGKIIVNMSTISPTE
                     NLAVKALVEAAGGQFAEAPVSGSVGPATNGTLLILFGGSEAVLNPLQKIFSLVGKKTF
                     HFGDVGKGSGAKLVLNSLLGIFGEAYSEAMLMARQFGIDTDTIVEAIGGSAMDSPMFQ
                     TKKSLWANREFPPAFALKHASKDLNLAVKELEQAGNTLPAVETVAASYRKAVEAGYGE
                     QDVSGVYLKLAEH"
     gene            complement(1050..1967)
                     /gene="hisB"
                     /locus_tag="ACFOCN_001459"
     CDS             complement(1050..1967)
                     /gene="hisB"
                     /locus_tag="ACFOCN_001459"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HFC6970591.1"
                     /translation="MNLTKTQRQLHNFLTLAQEAGSLSKLAKLCGYRTPVALYKLKQR
                     LEKQAEDPDARGIRPSLMAKLEKHTGKPKGWLDRKHRERTVPETAAESTGTAETQIAE
                     TASAAGCRSVTVNRNTCETQITVSINLDGSGKSRLDTGVPFLEHMIDQIARHGMIDID
                     ISCKGDLHIDDHHTAEDIGITLGQAIQQALGDKKGIRRYGHSYVPLDEALSRVVIDLS
                     GRPGLVYNIEFTRALIGRFDVDLFEEFFHGIVNHSMMTLHIDNLSGKNAHHQAETVFK
                     AFGRALRMAVEHDPRMAGQTPSTKGTLTA"
     gene            complement(1964..3061)
                     /gene="hisC"
                     /locus_tag="ACFOCN_001460"
     CDS             complement(1964..3061)
                     /gene="hisC"
                     /locus_tag="ACFOCN_001460"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HFC6970592.1"
                     /translation="MKSVRSFIRDDIQAMSAYQIADVPPGFAKLDSMESPVHPFAGHE
                     TLLQEWQARLAAAPIHLYPNPSGSGLQEALRSAFDIPDCADIALGNGSDELIQFITML
                     TAKPGAAMLAAEPSFVMYRHNAALYGMDYVGVPLNGDFTLNLPAVLEAVRKHRPALTF
                     IAYPNNPTGVCFTRAEIEAVIEASDGIVVVDEAYGAFNGDSFLPQAGSIPNLIVMRTV
                     SKIGFAGLRIGYAAGCPEVIGELQKILPPYNMNQLSLTTAKLALQHYGIISANIDSLK
                     NERERMFAELGKICRLNTFPSQANFITIRVPDADLLFDTLKQNRILVKKLHGAHPLLE
                     HCLRITVGSPAQNDAVLNIIRQLYCQPTDFL"
     gene            complement(3107..4396)
                     /gene="hisD"
                     /locus_tag="ACFOCN_001461"
     CDS             complement(3107..4396)
                     /gene="hisD"
                     /locus_tag="ACFOCN_001461"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HFC6970593.1"
                     /translation="MKKLNTQSPDFQAGLKALLAFETAQNPETERIVADICADVQKRG
                     DAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTAARRVESYHQRQ
                     KMESWSYTDEDGTLLGQQITPLDRVGIYVPGGKAAYPSSVIMNAMPAHVAGVKEIIMV
                     VPTPKGERNDIVLAAAYVAGVTKVFTVGGAQAVAALAYGTETIPQVDKITGPGNAFVA
                     AAKRRVFGVVGIDMVAGPSEILVIADGTTPADWVAMDLFSQAEHDEIAQAILIGTSQA
                     YLDEVEAAMDRLIETMPRRDIIEASLGNRGAMILAKDLDEACEIANYISPEHLELSVE
                     NPQEWAKKIRHAGAIFMGRYTGESLGDYCAGPNHVLPTSRTARFSSPLGTYDFQKRSS
                     LIQVSEQGAQKLGETASVLAHGESLTAHARAAEFRMK"
     gene            complement(4393..5292)
                     /locus_tag="ACFOCN_001462"
     CDS             complement(4393..5292)
                     /locus_tag="ACFOCN_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HFC6970594.1"
                     /translation="MVAKIKKFSDSTLSVLNNGERRFYVYCLTDLKKDKILYIGKGCG
                     NRIFEHEWVASRSQDPVSGEIIDRKLKAISKCKKLGRYIISYHLTEVEALAAESALIH
                     FVKSVLGKKLKNKIAGHGPGGISVEELDRRFGFSSLPLNEINPDGLILAIKIHNAFDL
                     DTDEELDYLFDNQDDANLKSRTLGNWVIGKDVASKVKYVIGVHTGLQNAVVSAYEVDG
                     FETMVEETKNGRKQSRYRFRTTSRSEEVLAKLGLQQKCLPELKFGSGGEKAYIRPKTE
                     TETEQENIQTTPNPKIKKEKTKS"
     gene            complement(5396..6049)
                     /gene="hisG"
                     /locus_tag="ACFOCN_001463"
     CDS             complement(5396..6049)
                     /gene="hisG"
                     /locus_tag="ACFOCN_001463"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HFC6970595.1"
                     /translation="MQDNALTIALSKGRIFEETLPLLAAAGIVPTEEPEKSRKLIIGT
                     NHENIRLVIVRATDVPTYVRYGAADFGIAGKDVLIEHGGTGLYRPLDLEIAKCRMMVA
                     VRKGFDYEAASQPGCRLKIATKYPEIAASHFAGKGVHVDIIKLYGSMELAPLVGLSDA
                     IVDLVSTGNTLKANGLEAVEHIVDISSRLVVNKAALKTKYALLEPIIQAFGGAVKAK"
     gene            complement(6128..6781)
                     /locus_tag="ACFOCN_001464"
     CDS             complement(6128..6781)
                     /locus_tag="ACFOCN_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HFC6970596.1"
                     /translation="MFSVPRSFLPGVFVLAALAACKPQDNSAAQVASSSASASAAENA
                     AKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKGKVVILSFGFTHCPDVCPTELLT
                     YSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
                     QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL"
BASE COUNT         1439 a         1685 c         2085 g         1843 t
ORIGIN      
        1 tcataatcgg gactgatttt aagcgtgggg tgataaaaat gccgtctgaa atatgttcag
       61 acggcattgt gtttggaaaa ggcaatcagt gttctgccaa tttcaggtaa acgccggaaa
      121 cgtcctgttc gccgtagccg gcttcgactg ctttgcggta gctggcagca acggtttcga
      181 cggcgggcag ggtgttgcct gcctgttcaa gctctttgac ggcgaggttg aggtctttgg
      241 aggcgtgttt gagggcgaag gcgggtggga attcgcggtt tgcccacagg gattttttgg
      301 tttggaacat gggcgagtcc attgccgagc cgccgatggc ttcgacgatg gtgtcggtat
      361 cgatgccgaa ctgccgcgcc atcagcatcg cttcgctgta cgcttcgccg aaaatgccca
      421 agagcgagtt caagacgagt ttcgcgcccg aacctttgcc gacatcgccg aaatggaagg
      481 tttttttgcc gacgagggaa aatatttttt gcagcgggtt taaaacggct tcgctgccgc
      541 cgaacagaat cagcagcgtg ccgttggtgg cgggcccgac cgatccggaa acgggtgctt
      601 cggcaaactg tccgcctgcg gcttcgacaa gtgctttgac ggcgaggttt tcggtcgggg
      661 agatggtgct catgttgacg atgattttgc cggccaatcc gtcgcggact ccgttcagga
      721 tgtcgcacac ggcggcatag tcggaaacca tcaggaaaat gacgggatag tcgcggacga
      781 gttcggcggt gttgccgtaa acttttgcgc ctttggcgga gatgggggca gttttgtcgg
      841 gcgagcggtt gtatacgccg acttcgatgc cgccgtccaa gagccgcgtt accataggca
      901 gacccatttg ccctaagcct atccagccga tttgtgtgta ttcgtttgcg gacatgatgt
      961 ttactccttt tctgtttgta gtgtagtgta atcttatctg ttccgatacc gtctgaaaag
     1021 cctgcgggtg tttcagacgg tatggttttt tatgcggtca gcgtgccttt ggtcgagggg
     1081 gtctgtcctg ccatgcgcgg gtcgtgttcg actgccatac gcagggcgcg cccgaaggct
     1141 ttgaatacgg tttccgcctg atggtgggcg tttttgccgc tgaggttgtc gatgtgcagg
     1201 gtcatcatac tgtggttgac gatgccgtgg aaaaattctt caaacaaatc gacatcgaaa
     1261 cgtccgatta gtgcgcgggt aaattcgatg ttgtacacga gtccggggcg gccggaaagg
     1321 tcgatgacga cgcggctgag ggcttcgtcg agcgggacgt aggaatgtcc gtaacggcgg
     1381 atgccttttt tgtcgccgag tgcctgctgg attgcttgtc cgagtgtgat gccgatgtct
     1441 tcggcggtgt ggtggtcgtc gatgtgcagg tcgcctttgc agctgatgtc gatgtcaatc
     1501 atgccgtggc gggcgatttg atcgatcatg tgttcgagga agggtacgcc ggtatccagc
     1561 ctgcttttgc cgctgccgtc gaggttgatg gagacggtga tttgggtttc gcaggtattg
     1621 cggttgacgg taacgctgcg gcagccggca gcagatgcgg tttcggcaat ttgggtttcg
     1681 gcagttccgg tgctttctgc ggcggtttcg gggacagtgc gttcgcggtg ttttctgtcg
     1741 agccagcctt tgggtttgcc ggtgtgtttt tcgagttttg ccatcaggct gggacggatg
     1801 ccgcgtgcat ctgggtcttc tgcctgcttt tcaaggcgtt gtttgagttt gtagagtgcg
     1861 acgggggtac ggtagccgca gagtttggcg agcttggaca gcgaacctgc ttcttgggcg
     1921 agggtcagaa agttgtgcag ttggcgttgt gttttagtca aattcatagg aaatccgttg
     1981 gttggcagta aagttggcga atgatgttga gaacggcatc gttttgtgcg gggctgccta
     2041 cggtaatgcg caggcagtgt tccaaaagcg ggtgcgcgcc atgcagtttt ttaaccaaga
     2101 tgcggttttg tttgagcgtg tcaaacaaca aatcggcatc gggtacgcgt atggtaatga
     2161 agtttgcctg acttggaaag gtgttcagac ggcatatttt gcccaattcg gcgaacatcc
     2221 gttcgcgttc gtttttcagg ctgtcgatgt tggcagagat gatgccgtag tgttgcaggg
     2281 cgagtttggc ggtggtcagg ctcagttggt tcatattgta gggcggcagg attttttgca
     2341 gttcgccgat gacttcggga cagcctgccg catagccgat acgcagtccg gcaaaaccga
     2401 ttttgctgac ggtacgcatg acgatgaggt tgggaatgct gcccgcctgc ggcaggaagc
     2461 tgtcgccgtt gaatgcgccg taggcttcgt cgacgacgac gatgccgtct gaagcttcga
     2521 tgacggcttc gatttcggca cgcgtgaaac atacgccggt ggggttgttg gggtaggcga
     2581 taaaggtcag ggcagggcgg tgcttcctga cggcttcgag gacggcgggc aggttgaggg
     2641 tgaaatctcc gttcagtgga acgccgacat aatccatgcc gtacagcgcg gcgttgtggc
     2701 ggtacatgac gaaactgggt tcggctgcca acattgccgc gcccggtttg gcggtcagca
     2761 tcgtgatgaa ctgtatcagc tcgtccgagc cgttgcccag cgcgatgtcg gcgcagtcgg
     2821 gaatgtcgaa cgccgaacgt aatgcttcct gtaaaccgct gccggaggga ttggggtaaa
     2881 gatggatggg cgcggcggca agccgtgcct gccattcctg caacagcgtt tcatgtccgg
     2941 caaaagggtg gacgggactt tccatcgaat cgagtttggc aaagccgggc ggaacgtcgg
     3001 caatctgata tgccgacata gcttgtatgt cgtcgcggat gaaggagcgg acggatttca
     3061 tcgtgtttcc ttaatggttg gaatatgcct gtacgccgtt tcggcattat ttcatacgga
     3121 actctgccgc gcgggcgtgg gcggtcaggc tttcgccgtg tgccagcacg ctggcggttt
     3181 cgcctaattt ttgcgcgccc tgttccgaaa cctgaatcag gctggagcgt ttttggaaat
     3241 catatgtccc caaaggcgag gaaaagcggg cggttcggct ggtgggcaat acatggtttg
     3301 gaccggcgca gtagtcgccg aggctttcgc cggtgtagcg tcccatgaaa atcgcaccgg
     3361 cgtggcggat ttttttcgcc cattcctgcg gattttcgac tgacagttcc aagtgttcgg
     3421 gggaaatgta gttggcgatt tcgcaggctt cgtccaagtc tttggcgagt atcatcgcgc
     3481 ccctgttgcc gagcgaggct tcgatgatgt cgcggcgcgg catagtttcg atcaggcggt
     3541 ccatagcggc ttctacttcg tcgagatacg cttgcgacgt gccgatgagg atggcttggg
     3601 caatttcgtc gtgttcggcc tggctgaaca aatccatcgc cacccaatcg gcaggtgtcg
     3661 tgccgtcggc gatgaccagg atttcagacg gccccgccac catgtcgatg ccgaccacgc
     3721 cgaacacgcg gcgtttggcg gcggcgacga aggcgttgcc cggaccggtg attttatcga
     3781 cttgggggat ggtttccgtg ccgtaggcga gggcggcaac cgcctgcgcg ccgccgacgg
     3841 tgaagacttt ggttacgccg gcgacgtatg cggcggcaag cacgatgtcg ttgcgttcgc
     3901 ctttcggtgt cggcacgacc atgatgattt ctttcacgcc tgcgacgtgg gcgggcatgg
     3961 cgttcatgat gacggaactc ggatatgccg ccttgccgcc ggggacgtaa atgccgacgc
     4021 ggtcaagcgg ggtaatctgt tgtcccaaca gcgtgccgtc ttcatcggtg tagctccacg
     4081 attccatttt ttggcgttgg tggtagcttt cgacacggcg ggcggcggtc tgcaatgccg
     4141 tctgaacgtc gttcggaatg cgctcgaacg ccgcgttcaa atcggcttgc gtgagtatta
     4201 aatcatcgat gcttttagcg tttgtctgat cgaatttgtt ggtgtattca atcaaagccg
     4261 catcgccgcg cttttgcacg tcggcgcaaa tgtcggcgac gatgcgttcg gtttcggggt
     4321 tttgcgcggt ttcaaaagcc agcagggctt tgagtccggc ttggaaatcg ggcgattggg
     4381 tgttgagttt tttcatgatt tggttttttc cttttttatt tttggattgg gggtcgtctg
     4441 aatattctct tgttcagttt ctgtctctgt tttgggtctg atatacgctt tttctccccc
     4501 gctaccaaac ttcaattcgg gcaggcattt ttgttgcaga ccgagtttgg ctaatacctc
     4561 ttcgctacga gaggtagtgc ggaaacggta acgggattgt tttctaccgt ttttggtttc
     4621 ctcaaccatt gtttcaaaac cgtccacttc gtatgcactg acaacagcgt tttgcagacc
     4681 ggtgtgaacg ccgataacgt atttcacttt tgaagcaaca tctttaccga taacccagtt
     4741 gcccaacgta cgcgatttga ggttggcatc gtcttggttg tcgaaaaggt agtctaattc
     4801 ttcgtcagta tctaaatcga aagcattgtg gattttgatg gcgagaatca gcccgtcggg
     4861 gttaatctcg ttaagtggga gagaagagaa tccaaagcgg cgatctagtt cttctacgct
     4921 aataccaccc ggaccatgcc cggcaatttt atttttgagt tttttaccca agacagattt
     4981 aacaaaatga attaaggcag attcggcggc gagtgcttcg acttcagtca gatgatagct
     5041 gatgatatag cgaccgagtt tcttgcattt ggagatggct ttgagtttcc gatcgataat
     5101 ctcgccggag actgggtctt gtgaacgact agcaacccat tcatgctcga agatacgatt
     5161 accgcagcct ttgccgatgt agaggatttt gtcttttttc aggtcggtca gacaatagac
     5221 ataaaaccga cgctcgccgt tattcaaaac ggaaagggtt gaatctgaga atttttttat
     5281 ttttgcaacc attttaactt ctcctataca gtttactgcc ggtgatattt tcagacgacc
     5341 tgtcggcggg aacggatagg gtcgtctgaa aacgcatctt tattcaaatg gatgcttact
     5401 tcgccttcac tgcgccgccg aacgcctgaa taatcggctc cagcagcgcg tatttcgttt
     5461 tcaaagcagc cttgttgacc accaggcggc tggaaatgtc gacgatgtgt tcgactgctt
     5521 ccaagccgtt tgccttcaag gtgttgcccg tcgaaaccaa gtccacaatc gcatcgctca
     5581 agccgaccag cggcgcaagt tccatcgagc cgtacagttt gataatgtcc acatggacac
     5641 ccttgccggc aaaatgagat gccgcgattt caggatactt cgtggcaatc ttcagacggc
     5701 atccgggttg cgaagctgct tcgtaatcaa accctttacg cacagcaacc atcatgcggc
     5761 acttggcaat ctccaaatcc aaaggccggt aaagccccgt gccgccgtgt tcgatcagca
     5821 cgtctttgcc cgcaatgccg aagtccgccg cgccgtagcg gacataagtc ggcacatcgg
     5881 ttgcgcggac aatgacaagg cggatgtttt catggttcgt cccgataatc agcttgcgcg
     5941 atttttcagg ctcttcagtc ggaacaatgc cggcagcggc aagcagcggc agcgtctcct
     6001 caaaaatgcg ccccttggat aaggcgattg tcaaagcatt atcctgcatg gtgtggatgt
     6061 cctttgtcgg ttgaaacaat aatgccgtct gaataggcgc cgacggtgca gacggcatac
     6121 ggttttatca gagcagagtc cttacatcgg cagcaatcgt ttccggctcg cttccgtaag
     6181 gcgagaaaat ggcaacctca ccgtttttgt cgatgagata cgcaccggaa gagtggtcga
     6241 ccaaatagtt ttcgctgtcg tctttttgat tgactttggc agaaaccacg cggtattgct
     6301 gcttgatgac cggcaggttt tggtcgcccg ttgccgtcag accgataaag tccggattga
     6361 actgtttggc atacttgccg atgatttcag gcgtgtcgcg ttccggatcg atgctgacga
     6421 acaccacttt cacgtcctta gcctgcccgc ccaactgctt caacgtgtcg ctgtacgtca
     6481 aaagctctgt cgggcagaca tcgggacagt gcgtaaagcc gaaagacaga atcacgacct
     6541 tgcctttcaa atcgctcagg ctgaaaggct tgccttcgcc gtcggtcagc gtgaaatcgc
     6601 cgccgatgtc ttccttacgc atatccgtac cgcgcgtttg cggctttgcc gcattttccg
     6661 cagccgacgc ggatgcactt gaagaagcga cttgcgccgc actgttgtct tgaggtttgc
     6721 aggcggcaag cgcggcaagt acgaaaacgc ccggcaaaaa ggaacgcggt acggaaaaca
     6781 tgacaatctc ccaagaataa atagcaaaac ctgattcgta cggaatttga atatttccat
     6841 cttaacgcgt ttggcagatt taatgtagta tttttttacg ttgtctgcac ggcaggaatt
     6901 gccgaatcat acagaatctt tggagcggaa agaacagtaa gattaaaata ataaaaattc
     6961 tatttaaaat caaaaataaa ataaaaacag ataaaataat ttcaaaaaaa aggtttacag
     7021 aatttcaaaa gccattataa tgacgacttc tt
//
LOCUS       DAXIFD010000103         7014 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.103, whole genome shotgun sequence.
ACCESSION   DAXIFD010000103 DAXIFD010000000
VERSION     DAXIFD010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7014
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.103"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..1345)
                     /locus_tag="ACFOCN_001465"
     CDS             complement(<1..1345)
                     /locus_tag="ACFOCN_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase/DUF3482 domain-containing protein"
                     /protein_id="HFC6970597.1"
                     /translation="MNKQPLSLAVVGHTNTGKTSLLRTLLRDSGFGEVRNAPSTTRHV
                     EEAAISDGADTLVFLYDTPGLEDAGGVLEWLENHTDNRSDGIERLQQFLGSHGAHHDF
                     NQEAKVLRQVLQSDMAMYVIDAREPVLDKYRDELTILSWCAKPVMPVFNFTGGQLPES
                     WTTMLARRNLHVFAGFDTVAFDFEGELRLWENLATMLPERSTLDRLTAMRRREWQRLD
                     GEARREIADFLLDAAAFRQEVDENEDTATVLQTMQAEIRQLERQMQQRLFALYRFYHS
                     EIDGGDWMPQAFRQDPFDSELLKQYGIRTGTGAATGALIGLGLDIATLGGSLGLGTAI
                     GGFLGGILPNTRTISDKLAGRQTLHTDPETLTLLAARALDLLHVLQTRGHAAQSDIEL
                     HSRKAPWDAARLPPELNKARSHWKWSSLNTHRPETSRAERAGYVEKLQIRLSGKYS"
     gene            complement(1419..2759)
                     /locus_tag="ACFOCN_001466"
     CDS             complement(1419..2759)
                     /locus_tag="ACFOCN_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2868 domain-containing protein"
                     /protein_id="HFC6970598.1"
                     /translation="MLNPSRKLVELIRILDEGGFIFSGDPVQATEALRRVDGSTEEKI
                     IRRAEMIDRNRMLRDTLERVRAGSFWLWVAAATFAFFTGFSGTYLLMDNQGLNFFLVL
                     AGVLGMNTLMLAVWLAMLFLRVKVGRFFSSPATWFRGKDPVNQAVLRLYADEWRQPSV
                     RWKIGATSHSLWLCTLLGMLVSVLLLLLVRQYTFNWESTLLGDSSSVRLVEMLAWLPA
                     KLGFPVPDARAVIEGRLNGNIADARAWSGLLVGSIACYGILPRLLAWAVCKILLKTSE
                     NGLDLEKPYYQAVIRRWQNKITDADTRRETVSAVSPKIVLNDAPKWAVMLETEWQDGE
                     WFEGRLAQEWLDKGVAANREQVAALETELKQKPAQLLIGVRAQTVPDRGVLRQIVRLS
                     EAAQGGAVVQLLAEQGLSDDLSEKLEHWRNALAECGAAWLEPDRAAQEGRLKDQ"
     gene            2902..3528
                     /locus_tag="ACFOCN_001467"
     CDS             2902..3528
                     /locus_tag="ACFOCN_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HFC6970599.1"
                     /translation="MYTGERFNTYSHLSGLILAAAGLALMLLKTIGHGDGYRIFSVSV
                     YGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWT
                     VFSLSWLLAAAGIAQELTIGRKSEKRLLSIAIYVVMGWMVLAVMKSLTASLPLAGLAW
                     LAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSVYGYVI"
     gene            complement(3592..5010)
                     /locus_tag="ACFOCN_001468"
     CDS             complement(3592..5010)
                     /locus_tag="ACFOCN_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6970600.1"
                     /translation="MENILSVLVGTVNRFLWDYLLIYALLGIGLFFTLYLGAPQITKL
                     GAGFKSVFGGLFAKGDKDDKSLSQFQALAVAISAQIGTGNVAGVATAITAGGPGAIFW
                     MWVSAVLGMSTIFAEALLAQKYRVVSHGKYIGGPAFYITHGLTPKIGRGAARFLSGFF
                     SIALIIALGFIGNATQANSIASAVTIAFDVPSLAVGIVLAVLAGMVVIGGVNRIANIA
                     QFVVPFMAVVYILCAVVILFEFSDYIVPMFNHIFTAAFNPEAVLGGAAGIGMREAIRF
                     GVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDTILVCTATALIILLTD
                     ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFALTTIIGWYYFGESNIRFLFRGR
                     HLGIYRALVLLAIVLGTLGKVDLVWSLSDMFNGFMVIPNLIALFLLRKEIRAIYDDYL
                     AQKKAGRDLSYQYEFHEFHDKG"
     gene            5337..6065
                     /locus_tag="ACFOCN_001469"
     CDS             5337..6065
                     /locus_tag="ACFOCN_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004285004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HFC6970601.1"
                     /translation="MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPG
                     ANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVEYIELRYEGYGIGGAALMVDCL
                     TDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGA
                     EDVVTNDDGSIEVITAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQ
                     KLIDALEDLDDVQDVYTSAVLNLD"
     gene            complement(6124..6612)
                     /locus_tag="ACFOCN_001470"
     CDS             complement(6124..6612)
                     /locus_tag="ACFOCN_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HFC6970602.1"
                     /translation="MTPLFRKAVWLLFAVSVCAFAGSLAAQYVLGMEPCVLCISQRLC
                     VLATALCTAIVLMCRPRRRAGGLFGAVFISIPAVTGISVAAYQLWLQSLPPGTAPSCG
                     APWTFRLKGWSLFDWFEPVVRGFGNCAEPDYLLGVALPVWSAAYFLAVVLTVWWAWAR
                     AK"
     gene            complement(6609..6731)
                     /locus_tag="ACFOCN_001471"
     CDS             complement(6609..6731)
                     /locus_tag="ACFOCN_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970603.1"
                     /translation="MYIGKTEIVRTCAGVDSSLAISGYIQQNRHIGILIGVLRK"
BASE COUNT         1821 a         1935 c         1803 g         1455 t
ORIGIN      
        1 cactatattt tcccgacagg cggatttgaa gtttctccac atatccggcg cgttcggcgc
       61 ggctggtttc ggggcggtgc gtattgagcg acgaccattt ccaatgactg cgggctttgt
      121 tgagttcggg cgggagtctg gcggcgtccc acggggcttt gcggctgtgc aactcgatat
      181 ccgattgtgc cgcgtgtccg cgcgtttgca ggacgtggag cagatcgagg gcgcgggcgg
      241 cgagcagggt cagggtttca gggtcggtgt gcaaggtttg gcggccggcg agtttgtcgg
      301 aaatggtgcg ggtattgggc aggatgccgc ccaaaaagcc gccgattgcc gtacccaatc
      361 cgagcgagcc gccgagtgtg gcgatgtcca gccccaagcc gatgagtgcg ccggttgccg
      421 cgcccgtgcc ggtgcggatg ccgtattgtt tgagcaattc gctgtcgaac gggtcttggc
      481 ggaaggcttg cggcatccag tcgccgccgt cgatttcgct gtggtagaaa cggtagaggg
      541 caaacagccg ctgctgcatc tgccgttcga gttggcgtat ttccgcctgc atggtttgta
      601 gcacggtggc ggtatcctcg ttttcgtcca cttcctgcct gaaggcggcg gcatcgagca
      661 ggaaatcggc gatttcgcgg cgcgcttcgc cgtccagccg ctgccattcg cgccggcgca
      721 tggctgtcag gcggtcaagt gtgctgcgtt cgggcaacat ggtggcgagg ttttcccaca
      781 ggcgtagttc gccttcaaaa tcaaaggcga cggtgtcgaa ccctgcgaaa acgtgcaggt
      841 ttctcctcgc cagcatggtt gtccacgatt cgggaagctg tccgccggta aagttgaaca
      901 cgggcataac tggtttggca caccatgaaa ggatggtcaa ttcatcccga tatttgtcga
      961 ggacgggctc gcgcgcgtcg atgacgtaca ttgccatatc gctttgcaag acttgccgta
     1021 agactttggc ttcctgattg aaatcatggt gcgcgccgtg gctgccgaga aactgttgca
     1081 gccgttcgat gccgtctgaa cgattgtccg tatggttttc cagccattcc agcacgccgc
     1141 ccgcgtcttc aagtccgggc gtgtcgtaca ggaaaaccag cgtgtctgcg ccgtcgctga
     1201 tggcggcttc ttcgacatgg cgtgtggtcg atggggcgtt tctgacttcg ccgaaaccgc
     1261 tgtcgcgcaa cagggtacga aggagcgagg ttttgccggt attggtatgc ccgacgacgg
     1321 cgagggaaag gggttgtttg ttcatgatgt ttttgaagaa tggattttca gacggtcttt
     1381 tttcagaatg gcggcttaac agaacatttc aagtgagttt attggtcttt caaacgccct
     1441 tcctgcgccg ccctgtcagg ctcaagccac gccgcgccgc attcggccag cgcgttacgc
     1501 caatgttcca gcttttccga aaggtcgtct gaaagcccct gttccgccaa aagctgcacc
     1561 accgcgccgc cctgcgccgc ttccgaaagt cggacgatct gccgcaacac gccgcggtcg
     1621 ggcacagttt gggcgcgcac gccgataagc agttgcgccg gtttctgctt cagctctgtc
     1681 tccagcgcgg caacctgttc ccgattggcg gcaacgccct tatccagcca ttcctgcgcc
     1741 agcctgccct cgaaccattc gccgtcctgc cattcggtct ccagcatgac cgcccatttc
     1801 ggcgcatcgt tcaagacgat tttcggcgaa acggcggaca cggtttcccg acgcgtatcc
     1861 gcatcggtga ttttgttctg ccagcggcgg atgaccgcct gataataggg tttttccaaa
     1921 tccaatccgt tttcgcttgt tttcaaaagg attttgcata ccgcccaagc caagaggcgc
     1981 ggcaggatgc cgtagcaggc gatactgccg accagcagcc ccgaccaagc ccgcgcatcg
     2041 gcaatattgc cgttcagacg gccttcgatg accgcccgcg catcaggcac gggaaaaccc
     2101 agtttcgcag gcagccatgc caacatttcc accagccgta ccgaagacga atcgcccaac
     2161 agcgtgcttt cccagttgaa cgtatattgc cgcaccaaaa gcagcaacaa taccgacacc
     2221 agcattccga gcagcgtgca gagccacagg ctgtgcgacg ttgcgcctat tttccaacgt
     2281 accgaaggtt gccgccactc gtccgcatac agccgcaaca ccgcctgatt tacagggtct
     2341 ttgccccgaa accacgtcgc cggactgctg aaaaaacgcc ccactttcac gcgcaggaac
     2401 aacattgcca accatactgc cagcatcagc gtattcatgc ccaacacgcc cgccaaaacc
     2461 aaaaagaaat tcagaccctg attgtccatt agaagataag tgcctgaaaa accggtaaaa
     2521 aacgcaaacg tcgccgccgc cacccacaac cagaacgacc ccgcacgcac acgttccaat
     2581 gtgtcccgca gcatacggtt cctgtcgatc atctccgccc gacggatgat tttttcctcc
     2641 gtactgccgt ccacgcggcg caaagcctcc gtcgcctgca cgggatcgcc gctgaaaata
     2701 aaaccgcctt cgtccaaaat acggatcagc tcaaccagtt ttcgggatgg attcaacata
     2761 aaatgccgtc tgaaaataaa aaacagattt taacacacgc attttcaaga atattcacag
     2821 tgtaggcaaa gagtaaatct cacacagaag caaaagtatc ggcgtaaact gactgcctct
     2881 actttcccga aagattgtgc gatgtataca ggcgaacgct tcaatactta cagccatttg
     2941 agcggtttga ttctggcggc ggcaggtttg gcgctgatgc tgctgaaaac cataggacac
     3001 ggggacggct accgtatctt cagcgtatcg gtttacggca tcagccttct tctgctctat
     3061 ttgagttcct cgctgtacca cggaattgca gccggaaaac tgaaaagcat tttgaaaaaa
     3121 accgaccact gcatgattta tgtgctgatt gccggaagct acacaccgtt tgcactggtt
     3181 tctttgagaa acgggccggg ctggacggta ttttcactgt cctggctgct ggcggctgca
     3241 ggaatcgcac aagaactcac catcggacgg aaaagcgaaa aacgactgct gtctattgcg
     3301 atttatgtcg tcatgggttg gatggtcttg gcggtaatga aatccctgac agcctcactc
     3361 ccgctggcag gactggcttg gctggcggca ggcggtatgc tgtacagcgt cggcatttac
     3421 tggtttgtaa acgatgaaaa aatccgacac gggcacggaa tctggcatct gttcgtattg
     3481 ggcggcagca tcacccaatt tgtcagtgtg tacggttatg taatctgaat gccgtctgaa
     3541 aagcaaaacc tcccgatcct gaagattggg aggttttctg tttgccggac atcagccctt
     3601 gtcgtggaac tcgtgaaatt catactgata ggacaaatcc cgacccgctt ttttctgtgc
     3661 caaataatca tcataaatgg cacggatttc cttacgcaac aaaaacaggg ctatcaagtt
     3721 cgggataacc ataaagccgt tgaacatatc ggacaggctc caaaccaaat cgactttgcc
     3781 gagcgtaccc aaaacgatgg caagcagaac caatgcgcga tagatgccca agtgtcttcc
     3841 cctgaaaaga aaacggatgt tggactcacc gaaataatac cagccgataa tggtcgtcaa
     3901 ggcgaaaaag gtcagacaca cggcaagcaa ttgcgaaccg aagcccggaa atgccttgtt
     3961 aaaggcaaac tgggtaaccg ccgcgccctg ttcgcccgaa aggttggcat cagtcagcag
     4021 gataatcaat gccgtagccg tacataccaa aatcgtatcg ataaacacac cgacaaatgc
     4081 cgccatacct tgctgcacag gatgcttcac atcagcggtt gcatgtgcat gcggggtaga
     4141 acccatacct gcttcgttgg aaaacagacc gcgcgccacg ccgaaacgta tcgcttcacg
     4201 cataccgata cccgcagcac cgcccaaaac ggcttcagga ttgaaggcgg cggtaaagat
     4261 gtggttgaac atcggcacaa tatagtcgga aaattcaaac aggataacga cggcgcacaa
     4321 aatataaaca accgccataa acggcacgac aaactgggca atattggcaa tacggttcac
     4381 gccgccaatc acaaccatgc ccgcaaggac ggcaagcaca ataccgactg ccaaagaagg
     4441 cacatcaaat gcaatggtaa cggcagaagc aatggagttt gcctgtgtcg cattaccgat
     4501 aaagcccaat gcgataatca acgcaatgga gaaaaagccc gacaggaaac gcgccgcgcc
     4561 cctgccgatt ttcggagtca gaccgtgcgt aatataaaac gccggcccac cgatgtattt
     4621 gccgtggctg acgacgcggt atttctgcgc cagcagtgcc tccgcaaaaa tcgtggacat
     4681 ccccaaaacg gcagaaaccc acatccaaaa aatcgcgccc ggcccgcctg cggtgatggc
     4741 ggtcgccacg ccggcgacgt tgcccgtacc gatttgcgcg gatatggcaa ccgccaacgc
     4801 ctgaaactgc gataaagact tatcgtcttt atcgcctttg gcaaacaagc cgccgaatac
     4861 agatttgaat cccgcaccca gcttggtaat ctgcggcgca ccgagataca gcgtaaaaaa
     4921 caggccgata cccaaaagcg cgtaaatcag caggtagtcc caaaggaacc gattgactgt
     4981 acccaccaga acagacaata tattttccat aaaataaacc ttatcttaca attaaaatga
     5041 ctgccttcca aaagacattc caataaggaa acacggcgag cagaccgtat ttgccgcaac
     5101 agatgcctta aattgtcaac aatcggggag aagctgcgcc atcataccgt aaaatatcgt
     5161 taattaaaac atttctttat ttttaagcgg aaagcggagg aaatcgcttt cagacggcat
     5221 cgacaacggc acggcataaa acaggatatt ttgggtactt gcaacttatg ttaaaatgcc
     5281 gaccgtaaaa aatctgacaa aaacagatta attatttgaa ataagaaagg aaatttatgg
     5341 caggtcatag caagtgggcg aatatccagc ataaaaaagc ccgtcaggat gccaaacgcg
     5401 gcaaaatctt cacccgttta atcaaagaaa tcaccgttgc ggcgcgtatg ggcggcggcg
     5461 atcccggcgc aaatccgcgc ctgcgcctgg ctttggaaaa agcagccgaa aacaatatgc
     5521 ccaaagacaa tgtgcaacgc gccatcgaca aaggcacggg caacttggaa ggcgtggaat
     5581 acatcgaatt gcgctacgaa ggctacggca tcggcggcgc ggctttgatg gtggactgcc
     5641 tgaccgacaa caaaacccgc accgttgcgg acgtacgcca cgcgtttacc aaaaacggcg
     5701 gcaacttggg taccgacggc tgcgtggcgt tcaacttcgt gcatcagggc tatttggtat
     5761 tcgaacccgg cgttgacgaa gacgcgctga tggaagcggc tttggaagcc ggtgcggaag
     5821 acgtggttac caacgacgac ggttccatcg aagtcattac cgcgccaaac gattgggcgg
     5881 gcgtaaaatc cgctttggag gcggcaggtt acaaatccgt tgacggcgac gttacgatgc
     5941 gcgcccaaaa cgaaaccgaa ctctccggcg acgatgccgt caaaatgcaa aaactgattg
     6001 acgcgctgga agacttggac gacgtgcaag acgtttacac ttccgccgta ttgaatttgg
     6061 actgatacgc agcacagcag acatacaata aaatgccgtc tgaacctttc agacggcatt
     6121 gatttattta gcccttgccc acgcccacca aaccgtcagg acaaccgcca gaaaatacgc
     6181 cgcgctccaa acaggcaaag caacccctaa cagataatcc ggttcggcac aatttccgaa
     6241 cccgcgcacg acaggctcga accaatcaaa caaagaccag cccttcaagc ggaacgtcca
     6301 cggcgcaccg cacgaaggag cggttcccgg cggcagcgac tgcaaccaca actgatatgc
     6361 cgcaacagaa atacccgtaa cggccggaat gctgataaag acagcaccga acaaaccgcc
     6421 cgcccttctt cttggtctgc acatcaggac aattgccgta cacaatgcgg ttgccaaaac
     6481 gcataaccgc tgactgatac acaaaacgca aggctccata cccaaaacat actgtgccgc
     6541 caaagaaccg gcaaatgcac agaccgaaac ggcaaacagc agccaaacgg cttttctaaa
     6601 taacggggtc attttctcaa cacaccaatc aaaataccga tatgccgatt ttgctggata
     6661 tatcccgaga tggcaaggga cgaatcgaca ccggcgcagg tgcggacgat ttcggttttc
     6721 ccgatataca caagacctga caagggacaa aacggcgatt tgcccgcaca atgcccgcaa
     6781 aaaaatacat ccggaggatt tgaatttcgg caaatttagc gaatcaaaag tttatttcaa
     6841 tgaaattata tgattttttt gaataagcgg attgacaggt ttttgaagga atttgttacc
     6901 ggatagccat cgggcaagtt ttttgcaaaa tttgaatcgg tcgggtaaat tttcaaaaaa
     6961 taattgacag cggataagaa acggcggata attcccgccg tcgagttgct tgat
//
LOCUS       DAXIFD010000104         6991 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.104, whole genome shotgun sequence.
ACCESSION   DAXIFD010000104 DAXIFD010000000
VERSION     DAXIFD010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6991
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.104"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            420..626
                     /locus_tag="ACFOCN_001472"
                     /pseudo
     CDS             420..626
                     /locus_tag="ACFOCN_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311098.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
     gene            626..823
                     /locus_tag="ACFOCN_001473"
                     /pseudo
     CDS             626..823
                     /locus_tag="ACFOCN_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757319.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1025..2428)
                     /gene="mtrE"
                     /locus_tag="ACFOCN_001474"
     CDS             complement(1025..2428)
                     /gene="mtrE"
                     /locus_tag="ACFOCN_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MtrE"
                     /protein_id="HFC6970604.1"
                     /translation="MDTTLKTTLTSVATAFALSACTMIPQYEQPKVEVAETFKNDTAD
                     SGIRAVDLGWHDYFADPRLQKLIDIALERNTSLRTAVLNSEIYRKQYMIERNNLLPTL
                     AANANDSRQGSLSGGNVSSSYKVGLGAASYELDLFGRVRSSSEAALQGYFASTANRDA
                     AHLSLIATVAKAYFNERYAEEAMSLAQRVLKTREETYKLSELRYKAGVISAVALRQQE
                     ALIESAKADYAHAARSREQARNALATLINQPIPDDLPAGLPLDKQFFVEKLPAGLSSE
                     VLLDRPDIRAAEHALKQANANIGAARAAFFPSIRLTGTVGTGSAELGGLFKSGTGVWS
                     FAPSITLPIFTWGTNKANLDVAKLRQQAQIVAYEAAVQSAFQDVANALAAREQLDKAY
                     DALSKQSRASKEALRLVGLRYKHGVSGALDLLDAERSSYSAEGAALSAQLTRAENLAD
                     LYKALGGGLKRDTQTDK"
     gene            complement(2483..5686)
                     /gene="mtrD"
                     /locus_tag="ACFOCN_001475"
     CDS             complement(2483..5686)
                     /gene="mtrD"
                     /locus_tag="ACFOCN_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MtrD"
                     /protein_id="HFC6970605.1"
                     /translation="MAKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTIT
                     LRATYPGASAQVMEDSVLSVIERNMNGVEGLDYLSTSADSSGSGSVSLTFTPDTDENL
                     AQVEVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSDVQSTEEMNDYAQRNI
                     VPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIG
                     SLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSS
                     TRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEIS
                     IEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLT
                     MFAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISV
                     FVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCATMLKTIPKGHHEEKKG
                     FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQ
                     GFVMVSVQLPAGATQERTNATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFA
                     ILKDWNERTAPGSDAVAIAGKLTGMMMGTLKDGFGIAVVPPPILELGNGSGLSINLQD
                     RNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGGLEDSPQLKIDINRAAAAAQGISF
                     ADIRTALASALSSSYVSDFPNQGRLQRVMVQVDEDARMQPADILNLTVPNKSGVAVPL
                     STIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFEW
                     GGQSREEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVT
                     GRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAAL
                     EAARLRFRPIIMTSFAFILGVVPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVP
                     LFYVVVRKFFKETAHEHEMAVKHAAEAGITGSDDSQH"
     gene            complement(5698..6936)
                     /gene="mtrC"
                     /locus_tag="ACFOCN_001476"
     CDS             complement(5698..6936)
                     /gene="mtrC"
                     /locus_tag="ACFOCN_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit MtrC"
                     /protein_id="HFC6970606.1"
                     /translation="MAFYAFKAMRAAALAAAVALVLSSCGKGGDAAQGGQPAGREAPA
                     PVVGVVTVHPQTVALTVELPGRLESLRTADVRAQVGGIIQKRLFQEGSYVRAGQPLYQ
                     IDSSTYEAGLESARAQLATAQATLAKADADLARYKPLVAAEAVSRQEYDAAVTAKRSA
                     EAGVKAAQAAIKSAGINLNRSRITAPISGFIGQSKVSEGTLLNAGDTTVLATIRQTNP
                     MYVNVTQSASEVMKLRRQIAEGKLLAADGVIAVGIKFDDGTVYPEKGRLLFADPTVNE
                     STGQITLRAAVPNDQNILMPGLYVRVLMDQVAVDNAFIVPQQAVTRGAKDTVMIVNAQ
                     GGMEPREVTVAQQQGTNWIVTSGLKDGDKVVVEGISIAGITGAKKVTPKEWAPSENQA
                     AAPQSGVQTASEAKTASEAE"
BASE COUNT         1627 a         1961 c         1825 g         1578 t
ORIGIN      
        1 atccactata catcaaacat caaattggac tgaccaatca gggcggattc taatgacacg
       61 ccgttcccgc cgtcaacggc atttacctcg caccgccccc gaaacacaag aaaaaactac
      121 accaaactac aatttttgtt catgcaaata tttgttttga caggatttaa acgaaagctc
      181 cgattcaaat ctgccgaacc gcccaaaaat atatagtgga ttaacaaaaa tcaggacaag
      241 gcgacgaagc cgcagacagt acagatagta cggtaaggcg aggcaacgcc gtactggttt
      301 aaatttaatc cactctattg acctgaatat taaagtttcg caaagtaatg caacgttgct
      361 ttaattggtt tgaccactat tgccgacgat tagaaaaata ttttcggaga tgttcaatta
      421 tggaaacttg ggttcaaaac tacacggcaa tcggcggcag cctgtatctg actgccgccg
      481 ccgcactctt acccatcgtc tttttctttg ccgcgctgac cgtcctgaag ctgaaaggct
      541 atcaggcggg gctttatacg ctgctgattg cgcttgccgt tgccgtattc ggcttcggga
      601 taccggcggg tatggcggtt tcttccctgc cgccgcagcc gcattgaccc aacgccccta
      661 cgccacactg tatttgaccg cgcattacaa aatcggcaaa tccacccgca tcggtttgga
      721 ctttgaaaac gtgttcaaca aacgctaccg ccctatgccc gacattcacg tttacagcac
      781 gccgcgcagc ctgaccgcaa ccgtcaaaca tatagtggat taacaaaaat cgggacaagg
      841 cgacgaagcc gcagacagta caaatagtac agaaccgatt cacttggtgc ttcagcacct
      901 tagagaatcg ttctctttga gctaaggcga ggcaacgccg tactggtttt tgttaatcca
      961 ctataaagaa agaaatgccg tctgaaacct tatcgtttca gacggcattt tattgcccga
     1021 ccggttattt gtcggtttgg gtatcccgtt tcaatccgcc gccgagtgcc ttgtacaaat
     1081 cggcaaggtt ttcggcgcgg gtcagttgtg ccgacaaagc cgcaccttcc gccgaatagc
     1141 tgctgcgttc cgcatcgagc aaatcaagcg cgccggatac gccgtgtttg taacgcagac
     1201 cgaccaaacg caacgcttct ttagaggcgc ggctttgttt gcttaaagcg tcataagctt
     1261 tatccagctg ctcgcgcgcc gccaatgcgt ttgccacgtc ttgaaatgcg gattggacgg
     1321 cggcttcata ggcaacgatt tgtgcctgtt ggcgcagttt tgccacatcg aggttcgcct
     1381 tgttcgtacc ccaggtaaaa atcggcaggg taatagacgg cgcgaacgac caaacgcccg
     1441 tgccgctttt gaacaaccca cccaattcgg cagaacccgt accgacggtt ccggtcaggc
     1501 ggatggatgg gaaaaaggcg gcgcgtgccg caccgatatt ggcgtttgcc tgtttgagcg
     1561 cgtgttcggc agcacggata tcgggacggt cgagcaatac ttcggaactc aaaccggccg
     1621 gcagtttttc aacaaaaaac tgcttgtcca gcggcaaacc ggcaggcagg tcgtcgggta
     1681 tcggttggtt aatcaaggtt gccaaggcat tgcgcgcctg ttcgcggctg cgcgcggcat
     1741 gggcataatc ggctttggca gattcgatta gggcttcctg ctgacgtagg gcgacagcgg
     1801 aaatcacgcc tgccttgtaa cgtaattcgg acagcttgta ggtttcctcg cgcgttttca
     1861 aaacacgttg cgccaaagac atcgcttctt cggcataacg ttcgttgaaa taggctttgg
     1921 caacggtggc aatcaggctc aaatgtgccg catcgcggtt ggcggtgctg gcgaaatagc
     1981 cttgcagtgc cgcctcgctg ctgctgcgta cacgcccgaa cagatcgagt tcgtaagatg
     2041 ccgcacccag tccgactttg tagctgctgc ttacattgcc gccgctcaag ctgccttggc
     2101 gcgagtcgtt cgcattggcg gcaagcgtgg gcaggaggtt gttgcgctca atcatgtatt
     2161 gtttgcggta gatttcgctg ttcaatacgg cggtacgcaa actggtattg cgctcgagtg
     2221 cgatgtcgat cagcttttgc aggcgcgggt cggcaaaata gtcatgccaa cctaaatcga
     2281 ccgcacggat gccgctgtcg gcggtatcgt ttttgaacgt ttcggcaact tcgactttgg
     2341 gctgctcgta ttggggaatc atggtgcagg cggataatgc gaaggctgtt gcaacagaag
     2401 tcaaggtggt tttcaatgta gtatccataa aaaagtcctg atgccgtctg aaaacccgta
     2461 ggcgttcaga cgtcatggtt gcttaatgtt ggctgtcgtc cgaaccggtg atgcccgctt
     2521 cggcggcgtg ttttactgcc atttcgtgtt cgtgcgcggt ttctttgaag aatttgcgca
     2581 ccaccacata gaaaagcgga acaaggaaca cggacaagag cgtgccgatg agcatccccc
     2641 agaatacggt cgtgccgatg gcgcgctggc tggcagaact tgcaccgccg gcaatataca
     2701 ggggaaccac gcccaaaata aaggcgaacg aggtcatgat aatcggacgg aaacgcaggc
     2761 gggcggcttc caaagcagct tcgaccgcgc ttttcccttg cgcttgaagg tctttggcaa
     2821 attcgataat caaaatcgcg tttttcgcac tcaaacccat cacggtaacg aaaccgactt
     2881 gaaagtagat gtcgttggcg aacgagggaa cgctgcccaa cagtccttca aacaggttgc
     2941 gcccggttac gcccgcagcc gcaccgatca aacccaacgg aatcacaagg atgaccgcca
     3001 gcggaatcga ccagctttca taaagcgcgg caagtaccaa aaatacggct gcaaccgcca
     3061 aaccgtacaa aatcagggtt tgcgagccgc cttttgcctc ttcgcgcgac tgtccgcccc
     3121 attcgaagct gtaaccgccg cccaattcgt caaccatttt ttgaaccgcc gccatagcct
     3181 gcccggtgga aacgccggtt gcaggcgaag cggacagctt catcgaagga taaccgttga
     3241 agcgtacgct ctgttccgta ccgttttccc aagaaacagt agcaatggtg gaaagcggta
     3301 cggcgacgcc ggatttgttc ggcacggtca ggttcaaaat atcggcaggc tgcatacggg
     3361 catcctcgtc gacctgcacc atcacgcgtt gcagacggcc ttggttcggg aagtcgctga
     3421 cataagacga actcagcgcg cttgccaatg cggtgcggat gtcggcaaac gaaatgcctt
     3481 gcgccgccgc ggcggcacgg ttgatgtcga ttttcaactg cggcgagtct tccaaaccgc
     3541 cggcacggac ggtgctgggg tcaaacaaac cgctggcacg cattttctga atcaactcgt
     3601 tgcgcttcgc cagcaatgcg gtatggccgg tattattgcg gtcttgcagg ttgatgctca
     3661 ggcccgaacc attgcccaac tccagaatcg gaggcgggac gacggcgatg ccaaaaccgt
     3721 ctttaagcgt ccccatcatc atacccgtca gcttgccggc aatcgcaacg gcatcgctgc
     3781 cgggcgcggt acgctcgttc caatctttca atatggcaaa acccatcgcc atattctgac
     3841 cgctgcccga aaagctgaag ccggaaacgg taatgatgtt ttctatttca ggaatgcttt
     3901 tcgccagttg ggtaacttgc gccaaagtcg cattggtgcg ctcttgggtc gctcctgcag
     3961 gcagttgcac gctgaccatg acgaagcctt ggtcttcggt cggcaggaat gaagtcggca
     4021 ggcgcataaa caggaacacg cccacaaccg ccaagccgat atagacaacc atcatgcgga
     4081 aagtcttacg cagcactttg gcaacccggc cttcgtaacc gtgcgtccaa ctgttgaatt
     4141 tcttgttaaa ccagccgaag aaaccttttt tctcttcgtg atgccctttc gggattgtct
     4201 tcaacattgt ggcacacaaa gcaggggtaa gggtcagcgc aaggaaggcg gagaatgcga
     4261 ttgatgacgc catcgtcagg gcaaactgtt tgtaaatatt gcccgtcgcc ccgctgaaca
     4321 tcgccaacgg tacgaacacg gaaatcagaa cggcggtaat accgatgacc gcgcccgaaa
     4381 tctgacccat cgcttttttg gtcgcttctt tgggcggcaa gccttcaccc gccataatgc
     4441 gctcgacgtt ttcaaccacc acaatcgcgt catcgaccac gatgccgatg accaaaacca
     4501 tcgcaaacat ggtcagtacg ttaatcgaca tgcccatata agagatgaaa gcgaaaccgc
     4561 ccaacagcga aatcggtacg acgatggtcg gaatcagcgt ataacggatg ttttgcagga
     4621 agagatacat tacgacaaac accagcacca tcgcttcgat taaagtatga atcacttttt
     4681 caatcgaaat ttcgacgaat ttggaagtat cgtaaggggt tttccagctc ataccctgag
     4741 gaaagtattt ttccaacgtc gccatgcgtt ctttaaccgc ctttgccgtc gccatcgcat
     4801 tgccgctgtt ggacagcatc accgccatac cggtggtatt tacaccgttc agacgggttg
     4861 aggaagaata gtcttccata cccagtccga cccttgccac atccttcagg taaacattag
     4921 aaccgtcggt attggcgcgg aggatgacgt tgccgaattc ttctgccgta cccaactgcc
     4981 cttgcgccgt tacggtagcc gtaaccgtct gtccgcgaac ggcgggaagc gaaccgatag
     5041 aacccgctga aatctggacg ttctgggcgg acagcgcact gccgatatcg gcaaacgaca
     5101 aattgtagtt ttgcagtttc ttaggatcaa cccaaatccg catcgcgcgt tgcgcgccga
     5161 acaggcgtac ctgccccacg ccttcgatac gctgcaactc gggaacgata ttacgctgcg
     5221 cgtagtcgtt catctcttcg gttgactgca catccgacga aagcatcaca atcatcagga
     5281 aattggaacg cgccttggat acggttacgc cgtattgctg gacggttgcc ggcagcgtgc
     5341 tcaatacttc ggaaagcttg ttctgcactt ccacctgcgc cagattctcg tcggtatcgg
     5401 gcgtaaaggt caggctcacg ctgccgctgc cgctcgaatc ggcggaagtg gacagataat
     5461 ccaaaccttc cacgccgttc atattccgct cgatcacgga aagcacgctg tcttccatta
     5521 cctgcgcgga cgcgcccgga taagtggccc tcagggtgat ggtcggggcg gcgacagacg
     5581 gatattgcga aacaggcagg cttttaatgc cgaaaatacc cgccgcaata atgaaaatcg
     5641 aaataaccca cgcgaaaatg gggcggtcga taaaaaattt agccatcgat gccttcctta
     5701 ttccgcttca gaagcagttt tggcttcaga tgccgtctga acgccggatt gaggcgcggc
     5761 ggcttggttt tcagacggcg cccattcttt gggcgttacc tttttcgcac ccgttatacc
     5821 ggcgatactg atgccttcca caaccacctt gtccccgtcc ttcagacccg acgtaacaat
     5881 ccaattcgta ccctgctgtt gcgcaaccgt tacctcgcgg ggttccatac cgccttgggc
     5941 attcacaatc atcacggtat ctttcgcacc gcgcgttacc gcctgctgcg gcacgatgaa
     6001 tgcgttatcc accgccactt ggtccatcag cacgcgcaca tacaggccgg gcatcaggat
     6061 attctgatcg ttcggtacgg cggcgcgcag ggtaatctga ccggtcgatt cgttgacggt
     6121 cggatcggca aacagcaggc ggcctttttc agggtaaact gtgccgtcgt caaatttgat
     6181 gccgaccgca atcacaccat ccgccgccag cagtttgcct tcggctatct gacggcgcaa
     6241 tttcatcact tcggatgcag actgggtaac gttcacatac atcggattgg tttggcggat
     6301 ggttgccagc acggtcgtat cgcccgcatt caacagcgta ccttcggaaa ctttggactg
     6361 accgataaag ccggaaatcg gcgcggtaat gcgcgaacgg ttcagattaa tgccggcaga
     6421 tttgattgcc gcctgtgctg ctttgacacc tgcctcggca gaacgtttcg ccgttaccgc
     6481 agcatcgtat tcctgccggc tgacggcttc ggcggcaacc aaaggcttgt atcgcgccaa
     6541 atccgcatcc gctttggcaa gcgttgcctg agccgttgcc agttgcgcgc gcgcactttc
     6601 cagacctgct tcataagtgg aactgtcgat ctgatacagc ggctgtccgg cacggacata
     6661 actgccttct tggaacaggc gtttttggat gatgccgccg acttgggcgc ggacatcggc
     6721 ggtacgcagc gattccaaac gccccggcaa ctcgacggtc aatgcgacgg tttgcggatg
     6781 gacggttacg acaccgacga cgggcgcagg ggcttcccga ccagcaggct gcccgccctg
     6841 cgccgcgtct ccgcctttac cgcaagacga cagtaccaat gcaacggcgg cagccaacgc
     6901 ggccgcacgc atcgccttaa aagcataaaa agccattatt tatcctatct gtctggtttg
     6961 atgtaaaggg ttttgccaat caacaggcat t
//
LOCUS       DAXIFD010000105         6866 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.105, whole genome shotgun sequence.
ACCESSION   DAXIFD010000105 DAXIFD010000000
VERSION     DAXIFD010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6866
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.105"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..212)
                     /locus_tag="ACFOCN_001477"
     CDS             complement(<1..212)
                     /locus_tag="ACFOCN_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970607.1"
                     /translation="MHSHYIFGILMISYVFAMLFNFIISYKIFKEEKLINGFFDFLLK
                     SSYLNFKYFNILFGKEKISNIFYLKL"
     gene            complement(215..418)
                     /locus_tag="ACFOCN_001478"
     CDS             complement(215..418)
                     /locus_tag="ACFOCN_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970608.1"
                     /translation="MLSLEIQQEGFTIGGGLVLGGCAGAHLARKEPLILTGKTGAGAS
                     AIANASIGYQWTVNLSEPKEGAK"
     gene            complement(982..1917)
                     /locus_tag="ACFOCN_001479"
     CDS             complement(982..1917)
                     /locus_tag="ACFOCN_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 49 family protein"
                     /protein_id="HFC6970609.1"
                     /translation="MGHNMMTTQKWYEHITNVIIGNTANFNSGCPESIDYVDERKGVP
                     LAAMKYILMYTEAAASHAYLFEHDLKKFKQYAYVAGKLGILQSVDDEDPEPFFFPCDM
                     LNIQDPMFLMLMSDSPQLREFLVRNIDNIANDTEAFVNRYDLNRHMIYNTLLMVEGKQ
                     LDRLKQRSEKVLAHPTPSKWLQKRLYDYRFFLAFAEQDAEAMKAALEPLFDKKTARMA
                     AKETLSYFDFYLQPQIVTYAKIASMHGFDLGIDQEIAPRDLIVYDPLPADEYQDIFDF
                     MKQYDLSYPYEYLQDWIDYYTFKTDKLVFGNAKRE"
     gene            complement(1920..2540)
                     /locus_tag="ACFOCN_001480"
     CDS             complement(1920..2540)
                     /locus_tag="ACFOCN_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970610.1"
                     /translation="MLGVVPGIGESIQAYKVAKAAKNLQGMKKALDKAATVATAQGYV
                     SKTKIKIGQIELRVTAATDKQLLKAIGEGRDTTGKMTEQLFDSLAKQNGFRVLSGGKY
                     GGNNGFDHVWQAADGSVVLIVESKQIRNGTVQLNPNGAGGYTQMSREWIKQVVKSLPD
                     GSPAKAVVLKANQNGKLKTAIAGVDRQTGKAVILSVKVPSKTNIRR"
     gene            complement(2718..2996)
                     /locus_tag="ACFOCN_001481"
                     /pseudo
     CDS             complement(2718..2996)
                     /locus_tag="ACFOCN_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
     gene            complement(3092..3364)
                     /locus_tag="ACFOCN_001482"
     CDS             complement(3092..3364)
                     /locus_tag="ACFOCN_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970611.1"
                     /translation="MNKRMKMCPACQQGYLYHSKPKYLHDEIILCDECDAVWLKGMNI
                     FYGEYEKDFYSYVPFMESQGITSECIWEGDLFDHPYYEDENSNDMD"
     gene            complement(3552..4040)
                     /locus_tag="ACFOCN_001483"
     CDS             complement(3552..4040)
                     /locus_tag="ACFOCN_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970612.1"
                     /translation="MKKDIFYCEQWSYGYKRLHKPFSEKQAEEKHIKGELYSAVIGSA
                     TQPEYVITLREEVGFFSVDFFDKFGRDYLTHQFQKYSNSNYYFLSMAVWRDYITLDSH
                     DLAEGYTYFFNENTDDCYVLKEDFINNERYEKTELYSQKDKVILFPKFGEYDLVLNPD
                     II"
     gene            complement(4037..6538)
                     /locus_tag="ACFOCN_001484"
     CDS             complement(4037..6538)
                     /locus_tag="ACFOCN_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6970613.1"
                     /translation="MLKTPPTLAAELSGKTGVSISAPYANENSRIILSAADIAAENGK
                     IKLQSYGDQSYYAGQGELYTLERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQG
                     IDIKSGGSIDAYATVFDAPKGSINIEAGRKLTLYAVEELNYDKLDSHKKRKFLGITYD
                     KVHDTSTQQMQTALPSRVVAESANLQSGWDTKLQGTQFETTLGGAVIRAGVGDQARAD
                     AKIILEGIKSSIHTETVSSSKSALWQKQAGRGSNIETLQLPSFTGPVAPVLSAPGGYI
                     VDIPKGNLKTQIETLTKQPEYAYLKQLQVAKNINWNQVQLAYDKWDYKQEGMTPAAAA
                     VVVIVVTVLTYGALSAPAAAGTAGAAGAGAGGAAAGTAAGTGVAAGTAATTGVAAGTS
                     AAAITTAAGKAALASLASQAAVSLINNKGDINHTLKELGKSSTVRQAATAAVTAGVLQ
                     GISGLNTQAAEAVSKHFHSPAAGKLTANLINSTAAASVHTAINGGSLKDNLGDAALGA
                     IVSTVHGEVASKIKFNLSEDYIAHKIAHAIAGCAAAVANKGKCRDGAIGAAVGEMVGE
                     TLLDGRDVGKLSPQERQKVIAYSQIIAGSAVALVKGDVNTAANAATVAVENNSLLARR
                     RVNIRWTPRQELEHEYAILEIQAITNQIRRLDPKFNGIAIMRNPREPWTRHDVQTYRQ
                     YYNQLRESRGIPVLPIYRMRINNGNEFNRIMSSKYPYNELYVANPKSVTGHFRVDSYN
                     PATREIISRKFTQFSQIQESTGIGYIKEAVRKYSPGAVISNVPSTPASLRGRKLTGKL
                     ILEVPAQVNPIPQSVLRAAQEENVIIRDTTGRIYK"
BASE COUNT         1687 a         1554 c         1465 g         2160 t
ORIGIN      
        1 aataatttca aataaaaaat atttgagatt ttttcttttc caaataatat attgaaatat
       61 ttaaagttaa ggtagcttga tttaagtaga aaatcaaaaa aaccattaat taatttttct
      121 tctttaaata ttttatatga tattataaaa ttaaataaca ttgcgaaaac atatgaaatc
      181 atcaaaatac caaatatata gtgggaatgc attattattt agctccttct tttggctctg
      241 acaaattgac agtccattga tatccaatgc ttgcatttgc aattgctgac gcacctgccc
      301 ctgttttccc tgttagtatc aatggttctt ttcttgcaag atgtgcacct gcacaaccac
      361 ctaatactaa accaccacct attgtaaatc cttcctgttg tatctctaat gataacattt
      421 tcttcttgtg ccgcccttaa tacagattgt ggaattggat tgacctgagc aggaacttct
      481 aaaataagtt ttccttcaag ctgtcttcct cttagcagat taggtgtact tggaacattg
      541 gaaatgacaa agtgagtgcg caaagccacc tgaaggcgat gtgtttgaac ctgttgaaag
      601 cggccaacag gctaaatgcg cccgctgccg cctaaaaggc agcccggatg cctgattatc
      661 gggtgtccga ggaggattaa gggggtattt gggtaaaatt aggaggtatt tggtacgaaa
      721 acagccgaaa tcctgtgttt gggtttcgga tgtcggggaa gggctttttt gcaaaggtct
      781 caactcatgt tattgcaaag atctcatgcc ttgttttgcc agcaggttga gttcttctcc
      841 ggcaatcagc gtggtaaagc cccgccacaa cacagatcta tgtactgtgg aagggcttca
      901 atttatagct ttcaaaaatc tttcagcttt aagacggcct aaagttgtaa tctataaaac
      961 aggagctcag agttttacgg ctcactctcg cttcgcgtta ccaaatacca gcttatcggt
     1021 tttgaacgta tagtaatcta tccaatcctg cagatattca tacgggtaag acaagtcata
     1081 ctgtttcata aaatcgaaga tgtcttgata ttcgtctgcc ggcagcggat cgtaaacaat
     1141 caaatccctc ggtgcgattt cttgatctat gcccaaatcg aaaccgtgca tggatgcgat
     1201 tttggcgtag gtaacgattt gcggctgcag gtagaaatcg aaataggaca atgtttcttt
     1261 ggcagccata cgcgcggttt ttttatcgaa aagcggctct aaggcggcct tcatcgcctc
     1321 ggcatcctgt tcggcgaaag cgaggaagaa gcggtaatcg tacaaccgct tttgcagcca
     1381 tttgctaggg gtgggatgcg ccaagacttt ctcgctacgt tgtttcaacc gatcaagctg
     1441 cttaccctcc accatcagca gagtattgta aatcatatga cggttgaggt cgtatcggtt
     1501 tacgaaggct tctgtatcgt tggcgatgtt gtcgatattg cgcaccaaaa actcgcgcag
     1561 ctgcgggctg tcgctcatca gcatcagaaa catcggatct tgaatgttga gcatgtcgca
     1621 gggaaagaag aagggttcgg ggtcttcatc atctacactc tgcaaaatac ccaactttcc
     1681 tgcaacataa gcatattgct tgaatttctt aagatcatgt tcaaatagat aggcatggga
     1741 agccgcagct tcagtgtaca ttaaaatgta tttcatcgct gcaagcggaa cgccttttct
     1801 ttcatctaca taatctatag attcggggca accgctattg aaattagcag tattgcctat
     1861 gattacatta gtaatatgtt cataccattt ttgggtggtc atcatattgt gccccattgt
     1921 tatctcctta tattggtttt agaaggaact ttgacagaaa gaataacggc cttacctgtt
     1981 tgacgatcaa cgcctgctat tgccgttttt aatttgccgt tctgatttgc ttttaagaca
     2041 actgccttag caggactacc atcaggtaaa ctttttacaa cttgtttaat ccattcacga
     2101 ctcatctgcg tatatccacc cgcaccattc ggattcagct gtaccgtacc gttcctaatc
     2161 tgcttacttt ctacaatcaa aacaacacta ccatcggcag cctgccatac atgatcaaaa
     2221 ccgttatttc cgccgtattt gccgcccgaa agcactctga agccattttg tttagctaaa
     2281 gagtcaaata actgctcggt cattttacct gtcgtgtccc ttccttcgcc aatagctttc
     2341 agcaattgtt tgtcagttgc tgcagtaacc cttaattcaa tttgaccgat tttgattttg
     2401 gttttactga catagccctg tgcagtggca acggttgctg ccttgtccaa ggcttttttc
     2461 atgccttgta aattttttgc cgctttcgct actttatagg cctgtatcga ttcaccgata
     2521 cccggaacca cacccagcaa agcaaacagg tgatcggcag cggtctgtgc ttgtacaaaa
     2581 ctctgtatat caccgataat tggaataaat cctgtctgaa gaagcaaaac ttctcgatat
     2641 tcttcaggat tttcacgtat ccatttttgt tgttcctttt gaaattcatc acactttgca
     2701 ccaacgcatc taggatacaa agtattattc tccaccgcta tctgtgccgc attcgccgct
     2761 gtattcacat ccccgcctac aacggcagac gcagtgccgg caaccagttt tgaataggca
     2821 gtaatcttcg ctttagattt tttgatttcg gtcgcactca tacgactgaa atcagtattc
     2881 ttaaccaaag cctcaccaac aatctcaccg actgcagcgc ctatcgcgcc atcctgacac
     2941 ttgcccttat tcgccgccgc tgccgcacag cccgctatgg catgggcaat cttgtgggtg
     3001 gtatatcgct gccagccctc tctgttgata atcttgcgta tgattacgcc gtttgatggc
     3061 taatcgtacc tacgcaggct taaaatttcc atcaatccat atcatttgag ttttcatctt
     3121 cataatatgg atgatcaaac aaatctcctt cccaaataca ttcactcgtt ataccttggg
     3181 attccatgaa aggaacataa gaataaaaat ctttttcata ttctccataa aatatattca
     3241 tacctttgag ccatactgca tcgcattcat cacacagaat aatttcatca tgaagatatt
     3301 taggtttcga atggtagaga tagccttgtt gacaagcagg acacattttc attctcttat
     3361 tcatgattac tccatataat cgatttattt ttgtgggtaa gcagtagtga tttgattgct
     3421 gcctttagtc tgtacaacaa tacgtatata gcaatctgat aatttcctgg tttttatcag
     3481 ctttatcctc agattccaaa cccaataata aaagccgttt gaaatttttt tcagacggcc
     3541 ttaaaactta attaaataat gtccggattt aacaccaaat catattcgcc aaactttgga
     3601 aatagaatta ccttatcttt ttgggaatat aattctgttt tttcatatcg ctcattatta
     3661 ataaaatcct ctttcaaaac atagcaatca tccgtatttt cattgaagaa ataagtatat
     3721 ccttctgcta agtcatgaga gtctaaagtt atataatctc tccatacagc catagaaaga
     3781 aaataataat tcgaattgga atatttttga aattgatggg ttaaataatc ccttccaaat
     3841 ttatcgaaaa aatctaccga aaaaaaacct acttcctctc gcaaggtaat tacatattca
     3901 ggttgtgtcg ccgaacctat tacggcacta tataattccc ctttaatatg tttttcttca
     3961 gcttgtttct cagaaaaagg cttatgaagt ctcttataac cataagacca ctgctcacaa
     4021 taaaaaatat ctttcttcat ttgtaaatcc ttcctgttgt atctctaatg ataacatttt
     4081 cttcttgtgc cgcccttaat acagattgtg gaattggatt gacctgagca ggaacttcta
     4141 aaataagttt tcctgtaagt tttcttcctc ttagcgaagc aggtgtactt ggaacattgg
     4201 aaatgacagc accagggcta tattttctaa cagcctcctt gatataacca atccccgtac
     4261 tttcttggat ttgagaaaat tgggtaaatt ttcttgaaat aatttccctt gttgcaggat
     4321 tatacgaatc taccctaaaa tgtcccgtta ccgatttagg attggctaca taaagctcat
     4381 tataagggta ttttgatgac atgatacggt taaattcatt gccgttgttt atcctcattc
     4441 tataaattgg gagaacagga atgcctctgg attcccttaa ttgattataa tattgcctgt
     4501 atgtttgtac atcatgtctt gtccacggct ctctaggatt cctcataata gcaatcccgt
     4561 taaatttcgg atccagcctt cggatttgat tggtaatggc ctggatttca agaatggcat
     4621 attcatgttc caattcttgt cgcggagtcc aacgtatatt taccctcctg cgagctaaaa
     4681 gactattatt ctccactgcc acagtagccg cattcgccgc cgtattcaca tcccctttaa
     4741 ccaatgccac tgcgctgcct gcgataatct gcgagtaggc tatgactttt tggcgttctt
     4801 ggggtgacag tttgcctaca tcgcgtccgt ccaacagggt ttctcccacc atctcgccga
     4861 ctgccgcgcc gattgcgccg tcccgacatt tgcctttatt tgctaccgct gccgcacagc
     4921 ccgctatggc atgggcaatc ttgtgggcaa tgtagtcttc gctgagatta aatttgattt
     4981 tgctcgctac ttctccgtgt acggtactga ctatcgcacc cagtgcggca tcgcccaagt
     5041 tgtcttttag gctgccgccg ttgatggcgg tatggacact tgcggcagcg gtgctgttga
     5101 tcaggttagc ggtcagtttg cctgctgcgg gactgtgaaa atgtttgctg acggcttcgg
     5161 ctgcttgggt gttcagcccg cttatgccct gcagtacgcc tgcggttacg gcggcggtgg
     5221 cggcctgtct gacggtgctg cttttgccca gttctttcag ggtatggttt atgtctcctt
     5281 tgttgttgat gagggaaact gcggcttggc tggcgagact ggccagtgcg gctttgcctg
     5341 cggctgtggt gatagctgca gctgatgtgc ctgctgctac tccggttgtg gctgccgttc
     5401 ctgctgctac tccagttccg gctgccgttc ctgctgcggc tcctcccgct cctgcgcctg
     5461 ccgcgcccgc cgttccggcg gctgccgggg cggacagtgc accgtaggtc aatacggtta
     5521 cgacgataac gacgacagct gctgctgcgg gtgtcatgcc ctcctgtttg tagtcccatt
     5581 tatcgtaagc aagctgcacc tgattccagt tgatgttttt cgcaacttga agttgtttca
     5641 aataagcata ctcgggctgc ttggtgaggg tttcgatttg ggttttcaga ttgcctttcg
     5701 gaatgtcgac aatgtaaccg ccgggagcag agagtacggg cgcaacgggg ccggtgaaac
     5761 ttggcagttg cagggtttcg atgttgctgc cgcgtcctgc ctgtttttgc cagagggcgg
     5821 atttgctgct gcttacggtt tctgtgtgga tgctgctttt gatcccttcg aggataatct
     5881 tggcatcggc ccgtgcctgg tcgcctacgc ctgcacggat gaccgcgccg cccagcgtgg
     5941 tttcaaactg cgtaccttgt aacttggtat cccaacctga ttgcagatta gctgattcag
     6001 ccactacacg gcttggtaag gcagtttgca tctgttgggt agaggtatca tgtaccttat
     6061 cataagtaat gccgagaaat ttgcgtttct tatgactgtc tagtttgtcg tagttgagct
     6121 cttctacggc atagagtgtc aatttccgcc cggcttcgat gttaatgctg cctttggggg
     6181 catcgaatac ggtggcgtag gcgtcgatgc tgccaccaga tttgatgtcg ataccttggg
     6241 atgcgctgag gtttactgcg tcgggcttgg cgtttttgtg ttctttgact tcggtaatgt
     6301 gtttgcggtt gtaccatttg ccggttttgt agctgcggcg ttctaaggta tagagttcgc
     6361 cctgcccggc gtaataggat tggtcgccgt aggattgcag tttgattttg ccgttttctg
     6421 cggctatatc ggcggcactc aaaatgatgc ggctgttctc attggcatac ggtgcgctaa
     6481 tgctcacacc ggttttaccc gaaagttctg cagcaagcgt agggggtgtc ttcagcacgc
     6541 acgcgtctgg gcagtatata gggaatctga atatttactt gaataacaaa tgccgtctga
     6601 aaaattgtga gcttttcaga cggcattgag ccgtaaatca tggaacgcgt gcgtgctgaa
     6661 gcacacacct tacgcatgga ttttaggttt catgcaggct acagcttgct gcggcggcgg
     6721 tataaaagta tttttagtga tttaccgttt ttggtaattt tgcccgacgg ggttaaaaat
     6781 acagttgcta ctcttgctgc atgatattgg caagatttaa tttaaatgtt tgttgaatct
     6841 tgtttacatc cttagcaaaa atatga
//
LOCUS       DAXIFD010000106         6818 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.106, whole genome shotgun sequence.
ACCESSION   DAXIFD010000106 DAXIFD010000000
VERSION     DAXIFD010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6818
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.106"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(476..661)
                     /locus_tag="ACFOCN_001485"
                     /pseudo
     CDS             complement(476..661)
                     /locus_tag="ACFOCN_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247143.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            complement(690..1019)
                     /locus_tag="ACFOCN_001486"
     CDS             complement(690..1019)
                     /locus_tag="ACFOCN_001486"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6970614.1"
                     /translation="MGSLIIEDLQESFGKEAVKGKEITVHYTGWLEDGTKFDSSLDRR
                     QPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHGAGGVIPPHATLIFEV
                     ELLKVYE"
     gene            complement(1097..1183)
                     /locus_tag="ACFOCN_001487"
                     /pseudo
     CDS             complement(1097..1183)
                     /locus_tag="ACFOCN_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
     gene            1179..1244
                     /locus_tag="ACFOCN_001488"
                     /pseudo
     CDS             1179..1244
                     /locus_tag="ACFOCN_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1272..1469)
                     /locus_tag="ACFOCN_001489"
     CDS             complement(1272..1469)
                     /locus_tag="ACFOCN_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
                     /protein_id="HFC6970615.1"
                     /translation="MLKTLTFAALHFSTAFSITYVLTGSIGVSGAVALVEPLINTVVF
                     YSGLTKTSTALPRLSSTRTIL"
     gene            1591..2544
                     /locus_tag="ACFOCN_001490"
     CDS             1591..2544
                     /locus_tag="ACFOCN_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6970616.1"
                     /translation="MNQKKVVVLDADTLPGRTFHFDFPHELAVYGTTDAAETAGRVRD
                     AHIIITNKVMISADIIAHAPQLELIAVSATGVNNVDIGAAKAAGVAVCNVRAYGNESV
                     AEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIRDLNGKTLAVFGRGNIGR
                     TLAGYAQAFGMGVVFAEHKHAPDVREGYVSFEDAVQTADVLSLHCPLNAQTENMIGEN
                     ELRQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTEEPPRGGNPLLNARL
                     PNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVV"
     gene            complement(2622..4676)
                     /gene="metG"
                     /locus_tag="ACFOCN_001491"
     CDS             complement(2622..4676)
                     /gene="metG"
                     /locus_tag="ACFOCN_001491"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HFC6970617.1"
                     /translation="MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGHECY
                     YCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTDFGIGYDNYYSTHSPENKQ
                     FSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCG
                     TTYSPTELINPYSAVSGAKPELRESEHFFFKLGECADFLKAWTSGNNPHDGKPHLQAE
                     ALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNL
                     CDRIGVDFDEYFKADSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLT
                     VDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSD
                     LVGKYVNIAARASGFIAKRFESRLKDVADSALLAKLTAQSEAIAECYESREYAKALRD
                     IMALADIVNEYVDANKPWELAKQEGQDARLHEVCSELINAFTMLTAYLAPVLPQTAAN
                     AARFLNLDAITWANTRVTLGEHAINKYEHLMQRVEQKQVDDLIEANKQSIQTTPAPVE
                     DSKYEKVAEQAGFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIAA
                     FYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATADGKLKLLDVDAGAQPGDK
                     VG"
     gene            complement(4782..6620)
                     /gene="glmS"
                     /locus_tag="ACFOCN_001492"
     CDS             complement(4782..6620)
                     /gene="glmS"
                     /locus_tag="ACFOCN_001492"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HFC6970618.1"
                     /translation="MCGIVGAIRAHHNVVDFLTDGLKRLEYRGYDSSGIAVNTDGNIK
                     RVRRVGRVQLMEDAAREKHLNGSLGIGHTRWATHGGVTEPNAHPHISGGMIAVVHNGI
                     IENFESERKRLEDLGYRFESQTDTEVIAHSINHEYAQNGGRLFEAVQEAVKRFHGAYA
                     IAVIAQDKPDELVVARMGCPLLVALGDDETFIASDVSAVIAFTRRVAYLEDGDIALLA
                     SDGIKRLTDKNGLPAERKVKVSELSLASLELGPYSHFMQKEIHEQPRAIADTAEVFLD
                     GGFIPENFGKNAKSVFESIRSVKILACGTSYYAALTAKYWLESIAKIPADVEIASEYR
                     YRSVIADPDQLVITISQSGETLDTMEALKYAKSLGHRHSLSICNVMESALPRESSLVL
                     YTRAGAEIGVASTKAFTTQLVALFGLAVTLAKVRGLVSEEDEARYTEELRQLPGSVQH
                     ALNLEPQIAAWAQQFAKKTSALFLGRGIHYPIALEGALKLKEITYIHAEAYPAGELKH
                     GPLALVDENMPVVVIAPNDSLLDKVKANMQEVGARGGELFVFADLDSNFNATEGVHVI
                     RAPRHVGKLSPVVHTIPVQLLSYHVALARGTDVDKPRNLAKSVTVE"
BASE COUNT         1406 a         1652 c         2009 g         1751 t
ORIGIN      
        1 ccttgtcctg atttttgtta atccactata tctagccgaa ttactttatt tttttgatac
       61 gtaaccggcc ggttgccgtc attcccgcgc aggcgggaat ctagacattc aatactaagg
      121 caatttatcg gaaatgactg aaactcaaaa aactggattc ccactttcgt gggaatgacg
      181 cggtgcaggt ttccgtacgg atagcttcgt cattcccgag taggcgggaa tccagttcgc
      241 ttgttcggta aatgagaggg cggattacgc gcctgtcaga taaaccccgt gtttaaacgg
      301 gcggcaatga ggtacgcgca gagccttgaa gcgcaatcga tatattattt ccaccaaaac
      361 ggacgacccc gcttgccttg caaaccttta aaaaggaagc cacccggatt aatccgagtg
      421 gccgtggaaa atcatttacc gcttgattta tttaaaattt atggtataat ttgccttaat
      481 cggcagatgc tgcgtcgcgg caggttgacg gcaggtgctt ggtgtcgatt ttgtcggtgt
      541 cggctttgtc gttgcgcgca accggctgtc cgcagaacca ttttaccgaa ccgtcttgac
      601 gcttggccca cagggagagt tttttgtctt tgatttcttt gtttacgttg cttgaagcca
      661 ttatgtcaga cggtattgcc caggcagctt tattcgtaca ctttcagcag ctcgacttca
      721 aatatcaaag tggcgtgcgg gggaatcacg ccgccggcgc cgtgtgcgcc gtagcccatt
      781 tccgaaggga tggtcagctt gcgtttgccg ccctccttca ttccgccgaa gccttcgtcc
      841 cagcctttga tgacttgtcc gacgccgagc gtgatggtca gcggctggcg gcggtcgagg
      901 ctggagtcga atttggtgcc gtcttccagc caacctgtgt aatgcacggt aatctctttg
      961 cctttaactg cttcttttcc gaagctttcc tgcaaatctt caataatcag gctgcccata
     1021 tttgtccttt cgttgcttgt tggttaaaac ggcaagggta acataccgtc cggcgaagtc
     1081 aaatgccgct caaacgtcag ctgctccggt gcagctgaaa cggctgtgtt tgtttgactg
     1141 ttttattttt ttcgtaaagg ttccatgctt tttcatggaa atatagtgga ttaaatttta
     1201 atcaggacaa ggcgacgaag ccgcagacag tacaaatagt acggaaccga ttcacttggt
     1261 gcttcagcac cttagagaat cgttctcgtt gagctaaggc gaggcaacgc cgtactggtt
     1321 tttgttaatc cactatagaa aacgacggtg ttgattagag gctcgaccag cgcgaccgcc
     1381 cccgatacgc ctatactgcc cgtcagtaca taggttatac tgaaggcggt gctgaaatgc
     1441 agtgcggcaa aagtcagggt tttaagcatc atcatctctc ggattggaca ttgacggagg
     1501 gatgataaag attatcataa ggctgtgcgg tttaaatttg ctatttgctg ttagtgtaaa
     1561 taaatcattt tctaaatagg gataaaaatt atgaatcaga agaaagtagt cgtattggat
     1621 gcggatactt tacccggtcg gacttttcac ttcgatttcc cacacgagct tgcggtttac
     1681 ggtacgacag atgctgcgga aacggcagga cgggtgcgcg acgcgcatat tatcatcacc
     1741 aataaagtga tgatttcagc ggatatcatt gcacacgctc cgcaacttga attgattgcc
     1801 gtcagtgcga ccggtgtgaa caatgtcgat attggggcgg cgaaggcggc gggcgttgcg
     1861 gtatgcaatg tccgcgccta cggaaacgaa tcggttgcgg aacacgcctt tatgctgatg
     1921 attgcgttga tgcggaattt gcctgcctat cagcgtgatg ttgcggcagg attatgggag
     1981 aagtcgccgt ttttctgcca ttacggcgcg ccgattcggg atttgaacgg taaaacgctg
     2041 gcggttttcg gacgtggcaa tatcggacgg acgcttgccg gatacgcgca ggcattcggt
     2101 atgggggtgg tgtttgccga acacaaacac gcgcccgacg tgcgcgaagg ctatgtttcc
     2161 tttgaagatg cggtacagac tgccgacgtg ttgtcgctgc actgtccgct aaacgcccaa
     2221 actgaaaata tgataggcga aaacgaattg cggcagatga agcctggcgc ggttttaatc
     2281 aattgtgggc gcggcgggct ggtggatgaa aacgcgctgc ttgccgcact caaatacggg
     2341 cagatcggtg gggcgggtgt cgatgttttg acggaggagc cgccaagggg cggcaatccc
     2401 ttgctgaatg cacgcctgcc caatctgatt gttacgccgc ataccgcgtg ggcgagccgc
     2461 gaggctttgg acaggctgtt tgatatattg ttggcgaaca ttcacgcctt tgtgaaaggc
     2521 gaggcacaaa atcgggtggt ttgagcttgt cgggattatg ggaaaacaat gccgtctgaa
     2581 ggtctcaagg gtccagacgg cattgttttt gatatttcta cttaaccgac tttgtcgccc
     2641 ggttgcgcgc ctgcgtcgac atcaagcagt ttcagtttcc cgtctgccgt ggcggcactc
     2701 aaaatcatgc cttcggatac gccgaatttc gccattttgc gcggggcgaa gttggcgacg
     2761 gcaatgacca ttcttccgtt taactcggca gggttggggt aaaacgcggc gatgccggag
     2821 aagatgatac gtttttcaaa accgaaatcg aggtcgaatt tcaggagttt ggtgctgcct
     2881 tcgacggctt cgcagttcaa tactttggcg acgcgcatat cgattttcat aaagtcgtcg
     2941 aaacccgcct gttcggcgac tttttcgtat ttgctgtctt caacaggcgc gggggttgtc
     3001 tgaatacttt gtttgttggc ttcgattaaa tcgtccactt gtttttgctc cactcgttgc
     3061 attaaatgtt cgtatttgtt gatggcgtgt tcgcccaagg ttacccttgt gttcgcccaa
     3121 gtaatcgcgt ccagattgag gaaacgcgcg gcgttggcgg cggtttgcgg caacacgggg
     3181 gcgaggtagg cggtcaacat ggtgaaggcg ttgatgagct cgctgcatac ttcgtgcagg
     3241 cgtgcgtctt ggccttcttg tttcgccagt tcccaaggtt tgttggcatc aacatattcg
     3301 ttgacaatgt ctgccaatgc catgatgtcg cgcagggctt tggcgtattc gcggctttcg
     3361 tagcattcgg caatggcttc gctttgcgca gtcagttttg ccagcaacgc gctgtcggca
     3421 acgtctttca gacggctttc aaagcgtttg gcgataaaac ctgacgcgcg ggcggcgatg
     3481 ttgacgtatt tgcctacgag gtcgctgttg acgcgcgaga taaagtcttg caggttcaaa
     3541 tcgatgtctt cgattttgct gttgagtttg gcggcgatgt agtagcgcat ccactcgggg
     3601 tttaaacctt gttccagata ggatttagcg gtgatgaagg tgccgcgcga tttggacatt
     3661 ttttgtccgt ccacggtcaa aaagccgtgt gcgtacacgc cggtcggggc gcggtggccg
     3721 gagaagtgca gcatggcagg ccagaacagg gcgtggaaat agaggatgtc tttgccgatg
     3781 aagtggtaca tctcggtttg gctgtcggct ttgaagtatt cgtcaaaatc gacgccgatg
     3841 cggtcgcaca ggtttttaaa cgacgccatg tagccgacgg gcgcgtccag ccagacgtag
     3901 aagtatttgc ccggcgcgtc ggggatttca aagccgaaat acggcgcgtc gcgggaaatg
     3961 tcccagtcgg acagcgtggt ttcttcgcct tcgcccagcc attctttcat tttgttgagg
     4021 gcttcggctt gcagatgggg cttgccgtcg tgcgggttgt tgccggaagt ccatgctttg
     4081 aggaagtcgg cgcattcgcc cagtttgaag aagaagtgtt cggattcgcg caattcgggt
     4141 ttcgcgccgg aaacggcgga atacgggttg atcagttcgg tcggggaata ggtcgtgccg
     4201 cagacttcgc agttgtcgcc gtattggtct tgggcgtggc atttcgggca ttcgcctttg
     4261 acgaagcggt cgggcaggaa catttgtttt tcggggtcga aaagctgctc gatgacgcgg
     4321 ctctcaatct tgccgttggc tttcagcgcg cggtaaatgt cttgggaaaa ctgtttgttt
     4381 tcaggggaat gggtgctgta ataattgtcg taaccgatgc cgaaatcggt aaagtcggcg
     4441 aggtgctctt cgcgcacttt ggcaatcatg tcttcgggcg cgatgccttg tttttgcgcg
     4501 gcaagcatta cgggcgtgcc gtgagtgtcg tcggcgcagc agtagtagca ttcgtggccg
     4561 cgcagttttt gaaagcgcac ccaaacgtcg gtttggatgt gttcgaccat atggccgagg
     4621 tggatgctgc cgttggcata gggcagggcg gaggtaacga ggattttgcg tgtcatggtt
     4681 tatgcttttg gggatagatg gtaaagggga attataccgt aaatgccgtc tgaagcctga
     4741 aaaatcaggc ttcagacggc atgttcgcaa acaatccgga cttattcgac cgtaacggat
     4801 ttcgccaggt tgcgcggttt gtctacatcg gtgccgcgtg cgagggcgac atggtaggaa
     4861 aggagctgca cggggatagt atgcacgacg ggggacagtt tgccgacgtg gcgcggtgcg
     4921 cggataacgt gcacaccttc ggtggcatta aaattgctgt cgaggtcggc aaagacgaaa
     4981 agttcgccgc cgcgcgcgcc gacttcctgc atattggctt tgactttgtc caacaggctg
     5041 tcgttgggtg cgatgacgac gacgggcatg ttttcgtcca ccaaggcaag cggcccgtgc
     5101 ttcagttcgc cggcaggata ggcttcggcg tggatgtagg tgatttcctt cagttttaac
     5161 gcgccttcga gggcaatcgg gtaatggatg ccgcgcccca aaaacagcgc gctggttttc
     5221 ttggcaaact gttgcgccca ggcggcaatt tgcggttcga ggtttaaagc gtgctgcacg
     5281 ctgccgggaa gctggcggag ttcttcggtg taacgtgctt cgtcttcttc ggaaaccaaa
     5341 ccgcgcactt tcgccagcgt taccgccaaa ccgaacagcg caaccagctg cgtggtaaat
     5401 gctttggttg aggcgacgcc gatttccgca ccggcacggg tataaagcac gaggctgctt
     5461 tcgcgcggca gggcggattc catcacgttg cagatggaga ggctgtggcg gtgtcccaag
     5521 gattttgcgt atttcaacgc ctccatcgtg tccagcgttt cgccggattg ggaaatggta
     5581 atgaccagtt ggtccggatc ggcaatcacg ctgcggtatc ggtattcgct ggcgatttcg
     5641 acatcggccg ggattttggc gatggattcc aaccaatatt tggcggtcag cgcggcgtaa
     5701 taggacgtgc cgcaggcaag gattttgacg ctgcggatgc tttcaaacac gcttttggcg
     5761 tttttgccga agttttcggg gatgaagccg ccgtcgagga aaacctccgc cgtgtctgca
     5821 atcgcgcgcg gctgctcatg gatttccttt tgcataaagt ggctgtacgg tcccagttcc
     5881 aaagaggcga gcgagagttc ggataccttg actttgcgtt cggcaggcag gccgttttta
     5941 tcggtcagcc ttttgatgcc gtctgaagcc agcagcgcga tgtcgccgtc ttcgaggtac
     6001 gccacgcggc gcgtaaaggc gatgacggcg gatacgtccg aagcgataaa ggtttcatcg
     6061 tcgcccaaag cgaccaaaag cgggcagccc atacgcgcca cgactaattc atcaggcttg
     6121 tcttgggcaa taaccgcgat ggcgtatgcg ccgtggaaac gtttgaccgc ttcctgcacg
     6181 gcttcaaaca gcctgccgcc gttttgcgcg tattcgtgat tgatgctgtg ggcgatgact
     6241 tcggtatccg tttgcgattc aaaacggtat cccaaatctt ccaaacgttt gcgttcgctt
     6301 tcaaagtttt cgatgatgcc gttgtgcacg accgcaatca taccgccgct gatgtgcggg
     6361 tgggcgttcg gctcggtaac gccgccgtgt gtcgcccagc gcgtatgccc gatgcccaaa
     6421 ctgccgttca aatgcttttc acgcgccgca tcttccatta actgcacgcg cccgacacgg
     6481 cgcacgcgct tgatgttgcc gtcggtgttg acggcaatgc ctgatgaatc ataaccccgg
     6541 tattcgaggc gtttgagacc gtcggtcaga aaatcgacga cattgtgatg ggcgcggatg
     6601 gcgccgacga taccgcacat aactgttcct tagtatccgg ttgaaaaaaa aacaggcgcg
     6661 gacggctccc gtgccgcacc ttccgcttcg gattataaac cgcctcccgc gccggaaaac
     6721 agcaaaatgc cgtctgaagg cttgggcttg ctcaaaaaag ggagggattt ccccgcctga
     6781 ccgggatggg cgttcagacg gcattgcctg ctgccggt
//
LOCUS       DAXIFD010000107         6752 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.107, whole genome shotgun sequence.
ACCESSION   DAXIFD010000107 DAXIFD010000000
VERSION     DAXIFD010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6752
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.107"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            143..709
                     /locus_tag="ACFOCN_001493"
     CDS             143..709
                     /locus_tag="ACFOCN_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HFC6970619.1"
                     /translation="MSLYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAATALVFGT
                     VEALTPLAGWVGGFYAKPFISEWDHWAAFVLLGGLGLKMMHEGLSGEAEDARENKRES
                     WWLTVLTAFGTSIDSMIVGVGLAFMEVNIAFAAAIIGMATTVLVAVGLTVGRALGVLF
                     GRRAEFAGGLVLIAIGTWTLLSHLGLIG"
     gene            complement(985..3021)
                     /locus_tag="ACFOCN_001494"
     CDS             complement(985..3021)
                     /locus_tag="ACFOCN_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HFC6970620.1"
                     /translation="MTDNALLHLGEEPRFDQIKTEDIKPALQTAIAEAREQIAAIKAQ
                     THTGWANTVEPLTGITERVGRIWGVVSHLNSVADTPELRAVYNELMPEITVFFTEIGQ
                     DIELYNRFKTIKNSPEFDTLSPAQKTKLNHDLRDFVLSGAELPPEQQAELAKLQTEGA
                     QLSAKFSQNVLDATDAFGIYFDDAAPLAGIPEDALAMFAAAAQSESKTGYKIGLQIPH
                     YLAVIQYADNRELREQIYRAYVTRASELSDDGKFDNTANIDRTLANALQTAKLLGFKN
                     YAELSLATKMADTPEQVLNFLHDLARRAKPYAEKDLAEVKAFARESLGLADLQPWDLG
                     YASEKLREAKYAFSETEVKKYFPVGKVLNGLFAQIKKLYGIGFTEKTVPVWHKDVRYF
                     ELQQNGKTIGGVYMDLYAREGKRGGAWMNDYKGRRRFSDGTLQLPTAYLVCNFAPPVG
                     GREARLSHDEILILFHETGHGLHHLLTQVDELGVSGINGVEWDAVELPSQFMENFVWE
                     YNVLAQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDMMIYSEDDEGR
                     LKNWQQVLDSVRKKVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWAEVLSADAYAA
                     FEESDDVAATGKRFWQEILAVGGSRSAAESFKAFRGREPSIDALLRHSGFDNAA"
     gene            complement(3109..3981)
                     /locus_tag="ACFOCN_001495"
     CDS             complement(3109..3981)
                     /locus_tag="ACFOCN_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HFC6970621.1"
                     /translation="MEIWNRLDTWLGAVPIRAEAVESVAAVAALLLARALLLNIHFKR
                     HPDFGIESKRRFLVASRNITLLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELI
                     MCLSGSILRSATQQYSVGDYIEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVS
                     FPNSLLLSHPVRRDNILGDYVIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQ
                     RHLENVQAEKLFITPAARPRVTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRV
                     QYRLLNYPAGSETL"
     gene            4251..6641
                     /gene="gyrB"
                     /locus_tag="ACFOCN_001496"
     CDS             4251..6641
                     /gene="gyrB"
                     /locus_tag="ACFOCN_001496"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HFC6970622.1"
                     /translation="MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMV
                     FEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL
                     HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNV
                     VGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHES
                     FALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNI
                     PQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPK
                     FSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAR
                     EITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLK
                     GKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAH
                     IRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK
                     AKIVSDSRTIEGEELANTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENA
                     DKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTL
                     TQTAAALKGMVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPE
                     QLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA"
BASE COUNT         1477 a         1771 c         1993 g         1511 t
ORIGIN      
        1 ccacctacgt tccatccgac gcatccgccc tacggttccg gattcccctg cgaaccgccc
       61 cgcgcacgaa aactgcttta cgcggcgttt ttcgcgtttt gctgttttgc tataatccgc
      121 cctttttaag gacgggtgcg gtatgagtct ttacgctttg ctcttgattg cgctggggat
      181 gtcgatggat gcgtttgccg tcgcgctggc aaagggtgcg gcggtcagga tgcctccgcg
      241 caaaattgca gcaacagcct tggtgttcgg cacggttgaa gcgctcacgc cgctggcagg
      301 ctgggtaggc ggtttttatg ccaagccgtt tatcagcgaa tgggaccatt gggcggcttt
      361 cgtcctgctg ggcgggctgg gtctgaaaat gatgcacgaa gggttgtccg gcgaggcgga
      421 ggacgcgcgg gaaaacaaac gggaaagctg gtggttgacg gttctgactg cttttggaac
      481 cagtattgat tccatgatag tcggggtggg cttggcgttt atggaggtaa acatcgcctt
      541 tgccgccgca atcatcggta tggcgacgac ggtgctggtg gcggtcgggc tgacggtggg
      601 aagggctttg ggcgtattgt tcggcaggcg tgcggaattt gccggaggtt tggtgttgat
      661 tgccatcggt acatggacgc tcttgtcgca cttggggctg atcgggtaag gactgccaaa
      721 aaatgctgtc tgaagcgttg tttgaccgtt tcagacggca ttttttattt tttgggcgta
      781 gggcgaatcc gtaaggtggg atgtaaggtg ggatgtaggg tgggcttcag cccaccctac
      841 gcccactgtt tttgattttt tgtttttgcg ggaatgacgg gattttggct tactgttttt
      901 gtgaaaatgg cgaaaccgcg caaatgctga tgccgtctga aacactgttt gattgtttca
      961 gacggcattt tttgttcaca tcgatcaagc cgcgttgtcg aaaccgctgt ggcgcaagag
     1021 tgcgtctatg ctcggttcgc ggccgcggaa ggctttgaag gattctgccg cgctgcgcga
     1081 tccgccgacg gcgaggattt cctgccaaaa gcgtttgcct gtggcggcga catcgtcgct
     1141 ttcttcaaag gcggcgtatg cgtccgcgct caatacttcc gcccacgcgt agctgtaata
     1201 gcctgcggaa tagccgcctg cgaagatgtg gccgaagctc aaggcgaagc ggttgtattc
     1261 gggcggctgg atgacggcga cttttttgcg cacgctgtct aaaacctgtt gccagttttt
     1321 cagacggcct tcgtcgtctt cgctgtaaat catcatatca aagagggcga actccatttg
     1381 ccggacgagg aacatgccgc gttggaagtt tttggcggcg agcattttgt cgaagagttc
     1441 tttcggcagg ggaacgccgg tttcttcgtg ggctgacatt tgtgccaaga cattgtattc
     1501 ccaaacgaaa ttttccataa actggctggg cagttcgacc gcgtcccatt ctacgccgtt
     1561 gatgccggat acgcccagtt cgtccacttg ggtaagcagg tggtgcagcc cgtgtccggt
     1621 ttcgtggaag aggatgagga tttcgtcgtg gctcaggcgg gcttccctgc cgccgacggg
     1681 tggggcgaag ttgcagacga ggtaggcggt gggcagttgc agcgtgccgt ctgaaaaacg
     1741 gcggcggcct ttgtagtcgt tcatccacgc gccgccgcgc ttgccttcgc gggcgtagag
     1801 gtccatatag acgccgccta tggttttgcc gttttgttgc aattcaaaat agcgcacgtc
     1861 tttgtgccag acggggacgg ttttttcggt aaatccgatg ccgtagagtt ttttgatttg
     1921 ggcgaacagt ccgtttaata ctttgccgac ggggaagtat tttttgactt cggtttcgct
     1981 gaacgcgtat ttggcttcgc gcagtttttc gctggcgtag cccaagtccc acggttgcaa
     2041 atcggcgagg ccgaggcttt cgcgggcgaa ggctttgact tcggcgaggt ctttttcggc
     2101 gtagggtttg gcgcggcggg cgaggtcgtg caggaagttt aaaacttgtt cgggggtgtc
     2161 cgccattttg gttgccagcg acaattcggc gtagtttttg aagccgagca gtttggcggt
     2221 ttgcagggcg tttgcgagcg tgcggtcgat gttggcggtg ttgtcgaatt tgccgtcgtc
     2281 tgacagttcg ctggcgcggg taacgtaggc gcggtagatt tgttcgcgca gttcgcggtt
     2341 gtcggcgtat tggatgacgg cgaggtagtg tggaatctgc aagccgattt tgtagcctgt
     2401 tttgctttcg ctttgcgcgg cggcggcaaa catggcgagc gcgtcttcgg gaatgccggc
     2461 aagcggtgcg gcatcgtcaa agtaaatgcc gaacgcgtcg gtcgcgtcta ggacgttttg
     2521 ggagaatttg gcggaaagtt gcgcgccttc ggtttgcagt tttgccagtt ctgcctgctg
     2581 ttcgggcggc agttccgcgc cgctgaggac gaaatcgcgc agatcgtggt tgagtttggt
     2641 tttttgtgcg ggggagaggg tgtcgaattc gggggaattt ttgatggttt tgaagcggtt
     2701 gtacagctcg atgtcttgtc cgatttcggt gaagaagacg gtgatttcgg gcatcagttc
     2761 gttatagacg gcgcgcagtt cgggcgtgtc ggcgacggag ttgaggtgcg acaccacgcc
     2821 ccaaatcctg ccgacgcgtt cggtgatgcc ggtcaggggt tcgacagtgt ttgcccagcc
     2881 ggtgtgcgtt tgggctttga tggcggcgat ttgttcgcgc gcttcggcga tggcggtttg
     2941 cagggcgggt ttgatgtctt cggttttgat ttgatcaaaa cggggttctt cgcccaaatg
     3001 gagcagtgcg ttgtcagtca taagatgggt ttcctttgcg tgttgtgctt cagacagcat
     3061 atcggcaata tgccgtctga agccggaaat ggggtcggtc ggggaaagtt aaagtgtttc
     3121 ggagccggcg gggtaattta acaggcggta ttgtacgcgc aaaaattcgt ccataaccgc
     3181 ctgttggatt tccagccgct ttgaaacggg ggaggcgaag cggacgatga tgcggtatgc
     3241 cttgtcatcg tacggcacgc gggtaacgcg cggtctggcg gcgggcgtga taaacagttt
     3301 ttccgcctgc acgttttcca aatgccgttg gatggcgggg atgtagggcg cgcacaaggg
     3361 ctcgagtacg gctttcagac ggcatacggc ttcatccgaa tccaaatgga tggggacggg
     3421 gatttcgacc gtatggatga catagtcgcc caaaatattg tcgcggcgca cggggtggct
     3481 caacaacagg ctgttgggga aagaaacggt ggttcccgca agctgtccga ccaaggggtt
     3541 cggaccgacc tgcatcatca gcgtgttcaa caggttgatg tcgaccacgc gcccgcgcag
     3601 gccgttgatt tcgatatagt cgccgaccga gtattgctgg gtggcagacc ttaaaatact
     3661 gcccgacaga cacataatca gttccttcgt cgccacgacg accgccgccg ccaccgcaaa
     3721 catcgacaaa gccagcgttt ggatttgcgc cgaccagata aatgccagcg aaaacagcac
     3781 caaaagcagc gttatattgc ggctggcaac caaaaaccgc cgcttgcttt cgatgccgaa
     3841 atccggatgc cgtttgaagt ggatattcaa cagaagggcg cgcgccagca gcaaagccgc
     3901 aaccgccgcc acggattcga ccgcctccgc acgtatcggg acggcaccga gccaagtgtc
     3961 caacctattc catatttcca tttccgcgcc cctgtccgaa aagtataggg tgtagatttt
     4021 agtggcaaaa aaacgctttt gccactttac gggaaaatcc ccgacctgat gccggaggca
     4081 aacgtaccgt ttcatctttt cccggcggca cactgatgcg gataacgctg aattaggcgg
     4141 caaaatcggc tataatacac aattatatat gccgtcccgc ccgctttttc cacaaggtgc
     4201 ggacttgttt tggcggcatc gcaaaatctt ttcaaaatcc ggcaaaaaat atgactgaac
     4261 aaaaacacga agaatacggc gccgacagca ttcaggtgct cgaaggcttg gaagcggtac
     4321 gcaaacgccc cggcatgtac atcggcgaca cgcaggacgg cagcggcctg caccatatgg
     4381 tgttcgaagt attggacaac gccattgacg aagcactcgc cggacattgc gacaaaatca
     4441 cggtaacgat acacgccgac cattccgtca gcgtcgccga caacgggcgc ggtatgccca
     4501 ccggcatcca cccgaaagaa ggacgctccg ccgccgaagt catcatgacc gtattgcacg
     4561 cgggcggtaa attcgacaac aacagctaca aaatctccgg cggcctgcac ggcgtgggcg
     4621 tgtccgtcgt caacgcgctg tccgactggg taacgctgac catctaccgc gacggcaaag
     4681 aacacttcgt ccgcttcgtg cgcggcgaaa ccgaagagcc gctgaacgtt gtcggcgatt
     4741 ccgataaaaa aggcacgacc gtgcgcttcc tcgccagtac ggaaaccttc ggcaacgtcg
     4801 aatacagctt cgacatcctt gccaaacgca tccgcgaact ttcgttcctg aacaacggcg
     4861 tggacatcga attgaccgac gagcgcgacg gcaaacacga aagcttcgcc ctttccggcg
     4921 gcgtggctgg attcgtgcaa tacatgaacc gcaaaaaaac gcccttgcac gaaaaaatct
     4981 tctacgcgtt cggcgagaaa gacggcatga gcgtcgaatg cgcaatgcaa tggaacgaca
     5041 gctatcagga aagcgtgcag tgcttcacca acaacatccc tcagcgcgac ggcggtacgc
     5101 acctgaccgc gttgcgccaa gtgatgacgc gcaccatcaa cagctacatc gaagccaacg
     5161 aagtcgccaa aaaagccaaa gtggaaaccg ccggcgacga tatgcgcgaa ggtttgacct
     5221 gcgtgttgtc cgtcaaactg cccgacccca aattttcgtc ccaaaccaaa gacaaactgg
     5281 tttccggcga aatcggtccc gtcgtcaacg aagtcatcag ccaagccctg accgacttcc
     5341 tcgaagaaaa ccctgccgaa gccaaaatca tcaccggcaa aatcgtcgat gccgcccgcg
     5401 cgcgcgaagc cgcccgcaaa gcccgcgaaa tcacccgccg caaaggcgta atggacggct
     5461 tggggctacc cggcaaactc gccgactgcc aagaaaaaga ccccgcattg tcagaacttt
     5521 atttggtcga gggcgattct gcaggcggtt ccgccatgca ggggcgcgac cgcaaattcc
     5581 aagcgatttt gccgcttaag ggcaagattt tgaacgtgga aaaggcgcgc tttgaaaaaa
     5641 tgctcgccag tcaggaagtc gccgctttga ttactgcgtt gggtgcaggt atcggcaagg
     5701 aagaattcaa tgccgagaag ctgcgttacc accgcatcat cattatgacc gatgccgatg
     5761 tggacggcgc gcacatccgc accctgcttt taaccttctt ctaccgccaa atgcccgagc
     5821 tggtcgaacg cggctacatc tacattgccc agccgccttt atacaaagcc aaatacggca
     5881 aacaagaacg atatctcaaa gacgaattgg aaaaagacca atggctgctc ggtttagcct
     5941 tggaaaaagc caaaatcgtt tcagacagcc gcaccatcga aggcgaagag cttgccaata
     6001 ccgccaaaca attcctgttg gccaaaaccg tcatcgaaca ggaaagccgc ttcgtagacg
     6061 aactcgtcct gcgcgccatg ctacacgcgt cgcccattga tttgacgtcg tctgaaaacg
     6121 ccgataaagc cgttgccgaa ctttccggtc tgcttgacga aaaagaagtc gccctcgaac
     6181 gcatcgaagg tcatgaagga caccgattca tcaaaatcac gcgcaagctg cacggcaacg
     6241 tcatggtcag ctacatcgaa cccaagttcc tcaacagcaa agcctaccaa accctcaccc
     6301 aaaccgccgc cgcgctcaaa ggcatggtcg gcgagggtgc caagctttac aaaggcgaaa
     6361 acgggtacga cgcggacagc tttgaaaccg ctttggacat cttgatgagc gttgcccaaa
     6421 aaggtatgtc catccaacga tacaaaggct tgggcgagat gaaccccgaa cagctgtggg
     6481 aaaccacgat ggatcccgcc gtgcgccgcc tgttgaaagt gcgcatcgaa gacgccatcg
     6541 ccgccgacga agtgttcgtt acgctgatgg gcgacgaggt cgagccgcgc cgtgccttta
     6601 tcgaaaacaa cgcgctgatt gcccaaaata tcgacgcata agtgccgttt taaaaaagga
     6661 gacgggcatc gtgccgcgtc tccttttggt ttgtcaaacg gaagccatgc cgtctgaaac
     6721 cgcctttcgg agcaaaacca tgatcagcat tt
//
LOCUS       DAXIFD010000108         6586 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.108, whole genome shotgun sequence.
ACCESSION   DAXIFD010000108 DAXIFD010000000
VERSION     DAXIFD010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6586
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.108"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            120..1025
                     /gene="glyQ"
                     /locus_tag="ACFOCN_001497"
     CDS             120..1025
                     /gene="glyQ"
                     /locus_tag="ACFOCN_001497"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HFC6970623.1"
                     /translation="MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRAL
                     GPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGI
                     DPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITY
                     GIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQ
                     FNDYEAQAKRLLAVEGASLALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRAL
                     SRAVAQKYVESREKLGFPLMKANAA"
     gene            1102..1512
                     /locus_tag="ACFOCN_001498"
     CDS             1102..1512
                     /locus_tag="ACFOCN_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding protein YggL"
                     /protein_id="HFC6970624.1"
                     /translation="MPVYFRTPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAA
                     DDAEAFGRFMDELIAYLEANDFEMAGGGDCGDFSCLFQKSAPRGLGETEKKAIISWLA
                     GREDVATLHATPLVDGFYGDDGWENYSETYKQAD"
     gene            1533..3596
                     /gene="glyS"
                     /locus_tag="ACFOCN_001499"
     CDS             1533..3596
                     /gene="glyS"
                     /locus_tag="ACFOCN_001499"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HFC6970625.1"
                     /translation="MMTQTLLIELLTEELPPKALNNLGNHFAAAVAEGLEKAQLVDGA
                     AEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAK
                     IEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINAAVKKLPIPKVMRWGSSTFTFVR
                     PVHGLIVLHGGDVVNVSVLGLQSGNKTLGHRFLSNGEITIENADSYAAQMREQGKVVA
                     PFAERKAAIQTALERQARRLNAAVAADEALLDEVTALVEWPVVLEAGFEEHFLAVPQE
                     CLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTADPSHIIQGNERVLRARLSDAEFF
                     YKQDQKATLESRLPKLANVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAAR
                     LAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAIEQHYQPRFAGDKLPESKIA
                     AAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFD
                     SFPKGLLNEKTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDLTAKLQAVA
                     AFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAA
                     AVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADI
                     ALLGE"
     gene            3613..4659
                     /locus_tag="ACFOCN_001500"
     CDS             3613..4659
                     /locus_tag="ACFOCN_001500"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6970626.1"
                     /translation="MPSEAFRRHRAYRENKLQSLVSVLICAYNVEKYFAQSLAAVVNQ
                     TWRNLEILIVDDGSTDGTLAIAKDFQKRDSRIKILAQAQNSGLIPSLNIGLDELAKSG
                     MGEYIARTDADDIAAPDWIEKIVGEMEKDRSIIAMGAWLEVLSEEKDGNRLARHHRHG
                     KIWKKPTRHEDIADFFPFGNPIHNNTMIMRRSVIDGGLRYNTERDWAEDYQFWYDVSK
                     LGRLAYYPEALVKYRLHANQVSSKYSIRQHEIAQGIQKTARNDFLQSMGFKTRFDSLE
                     YRQIKAVAYELLEKHLPEEDFERARRFLYQCFKRTDTPPAGAWLDFAADGRMRRLFTL
                     RQYFGILRRLLKNR"
     gene            4701..5528
                     /locus_tag="ACFOCN_001501"
     CDS             4701..5528
                     /locus_tag="ACFOCN_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6970627.1"
                     /translation="MQNHVISLASAAERRAHIADTFGAHGIPFQFFDALMPSERLEQA
                     MAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYIAVFEDDVLLGEGAEKFLA
                     EDAWLQERFDPDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISR
                     KAMRFFLDRFAALPPEGLHPVDLMMFSDFFDREGMPVCQLDPALCAQELHYAKFHDQN
                     SALGSLIEHDRLLNRKQQWRDSPANTFKRRLIRALTKISREREKRRQRREQFIVPFQ"
     gene            5540..5635
                     /locus_tag="ACFOCN_001502"
                     /pseudo
     CDS             5540..5635
                     /locus_tag="ACFOCN_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233115.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
     gene            5677..6519
                     /locus_tag="ACFOCN_001503"
     CDS             5677..6519
                     /locus_tag="ACFOCN_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6970628.1"
                     /translation="MQNHVISLASAAERRAHIADTFGRHDIPFQFFDALMPSEELNRM
                     MAELVPGLAKQHLLSEVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLA
                     EDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISR
                     EAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKN
                     SMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRV
                     ISFK"
BASE COUNT         1682 a         1762 c         1743 g         1399 t
ORIGIN      
        1 aatttaatcc actatatcat gtatgccgtg ttttcaaatc agtctgtctt tgagataaac
       61 ctatccaaac agcaatggaa acagtaaaat aaacccttta ttttatcgaa tcataagcca
      121 tgcttacctt ccaacaaatc atcttcaaac tgcaaacctt ctgggcagac aaaggctgca
      181 ccgtcatcca acccttcgac atggaagtcg gtgccggcac atcccatccc gccacctgcc
      241 tgcgcgcgct cggtcccgag ccttggtttg ccgcctacgt ccaacccagc cgccgcccta
      301 aagacggccg ctacggcgac aatcccaacc gcctgcaaca ctactatcaa ttccaagtcg
      361 ccctcaaacc cgcccccgcc aatatccaag acctctatct tgattctctg cgcgaattgg
      421 gcatcgaccc caaagtccac gacatccgtt ttgtcgaaga cgactgggaa aatccgactt
      481 tgggcgcgtg gggtttgggc tgggaagtct ggctcaacgg catggaagta acccagttta
      541 cctacttcca acaagtcggc ggcattgact gcacccccgt actcggcgaa atcacctacg
      601 gcatcgaacg cttggcgatg tacctgcaag gcgtggaaaa cgtctatgac ctcgtttggg
      661 caaaaacgct ggacggcaat accgtaacct acggcgacgt gtaccaccaa aacgaagtcg
      721 aacaatccac ctacaacttc gaatacagcg atgccgattg gctgctgcgc cagttcaacg
      781 actacgaagc gcaagccaaa cgcctgcttg ccgttgaagg agcaagcctt gcgctgcctg
      841 cctacgagct ggttctcaaa gcggggcata cgttcaacct cttggacgcg cgcggcgcga
      901 tttccgtaac tgagcgggca acttatattg gacgtattcg tgcattgagc cgcgccgtgg
      961 cgcaaaaata tgttgaaagc cgcgaaaaac tgggcttccc tttaatgaag gcaaatgctg
     1021 cctaaggggg cgacgatttt ttacgttcgg gcggcacgat aaggcagccg tccggaagcc
     1081 attatatttt ttaggaaaat catgcctgtc tatttccgca ccccaagcag gaaacgcctg
     1141 cacaaaatga accgccgcca gcataaaaag ctgcatttgg gcgagtttca aacattgatt
     1201 ttcggcgttc aaggcagttt gcaccaagct gcggacgatg ccgaagcgtt tggccgcttt
     1261 atggacgagc tgattgcgta tcttgaggca aacgactttg aaatggcggg cgggggcgat
     1321 tgcggcgatt tttcgtgcct gtttcaaaaa tccgcccccc gaggcttggg cgaaaccgag
     1381 aaaaaagcca ttatctcttg gctggcaggc cgcgaagatg tcgccacttt gcacgccacc
     1441 ccgctggttg acggttttta cggggatgac ggctgggaaa attacagcga aacctataaa
     1501 caggcagatt aaccaaattc aaagaaagcc gaatgatgac ccaaaccctt ttaatcgaac
     1561 tccttaccga agaactcccg cccaaagctc tgaataatct gggcaaccat tttgccgccg
     1621 ccgttgccga aggcttggaa aaagcgcaac tggttgacgg tgcagccgaa tttacggctt
     1681 atgcctcgcc gcgccgtttg gcggttcaag tcaaaaacgt caaagccgtt caggccgacc
     1741 aaaaaatcgt gaaaaaaggc cctgccgtgg cgaatgccat gaaagacggt gcgccgacca
     1801 aggctttgga aggtttcgca cgcggtgcgg gcgcgaaaat cgaagacttg accatcgtcc
     1861 acgacggcaa gcaggacgtg tacgcctacg aatacgtcca aaccggcaaa ccgttgggcg
     1921 agcttttgga agacattatc aatgccgcag tgaaaaaatt gccgattcca aaagtaatgc
     1981 gttggggcag cagcacattt accttcgtgc gccccgtcca cgggctgatt gtgctgcacg
     2041 gcggcgatgt cgtgaacgtc agcgttttgg gtctgcaaag cggcaacaaa accttgggac
     2101 accgcttcct ctccaacggc gaaatcacca ttgaaaacgc cgacagctac gccgcacaaa
     2161 tgcgcgaaca aggcaaagtc gtcgctccgt ttgccgagcg caaagccgcg attcagacgg
     2221 cattggaaag gcaggcgcgc cgtctgaacg ccgccgtcgc cgccgatgaa gccttgttgg
     2281 acgaagtaac cgcgctggtc gaatggcctg tggtattgga agccggtttt gaggaacact
     2341 tcctcgccgt gcctcaagaa tgcttgattt tgacgatgca gcaaaaccaa aaatacttcc
     2401 cgctgctcga ccaaaacggc aagctgatga accgcttcct gctggtctcc aacctgcaaa
     2461 ccgcagaccc gtcgcacatc atccaaggca acgaacgcgt attgcgcgcg cgcctgtctg
     2521 atgccgagtt cttctacaag caagaccaaa aagcgactct ggaaagccgc ctgcccaagc
     2581 tggcaaacgt ggtgtaccac aacaaaatcg gttcgcaggc cgaacgcatc gaacgcctgc
     2641 aaagcattgc cgcccacatc gctaaagcgt tgggcgcaga tgctgccgca gccgaacgcg
     2701 ccgcacgttt ggcaaaagcc gacttggtga ccgaaatggt cggcgagttc cctgaactgc
     2761 aaggcacgat gggcaaatac tatgcccgct tggacggcga aaccgaagaa atcgccgaag
     2821 ccatcgagca gcactatcag ccgcgttttg ccggcgacaa gctgcccgaa agcaaaattg
     2881 ccgccgccgt ggcactggcg gacaagctgg aaaccctggt cggcatttgg ggcatcggtc
     2941 tgattccgac cggcgacaaa gacccctacg ccctgcgccg cgccgccttg ggtattttgc
     3001 ggatgctgat gcagtacggt ttggacgtga acgaactgat tcagacggca ttcgacagct
     3061 tccccaaagg tttgctcaac gaaaaaacgc cgtctgaaac cgccgacttt atgcaggcgc
     3121 gccttgccgt gttgctgcaa aacgattatc cgcaagacat cgttgccgcc gtactcgcca
     3181 aacagccgcg ccgtttggac gatttgaccg ccaaactgca ggccgttgcc gcgttcaaac
     3241 aactgcccga agccgccgcg ctcgccgccg ccaacaaacg cgtgcaaaac ctgctgaaaa
     3301 aagccgatgc cgagttgggc gcggttaacg aaagcctgtt gcaacaggac gaagaaaaag
     3361 ccctttttgc tgctgcgcaa ggcttgcagc cgaaaatcgc cgccgccgtc gccgaaggca
     3421 atttccaaac cgccttgtcc gaactggctt ccgtcaagcc gcaagtcgat gccttctttg
     3481 acggcgtgat ggtgatggct gaagatgccg ccgtgaaaca aaaccgcctg aacctgctga
     3541 accgcttggc agagcagatg aacgcggtag ccgacatcgc gcttttgggc gagtaaccgt
     3601 tgtacagtcc aaatgccgtc tgaagccttc agacggcatc gtgcctatcg ggagaataaa
     3661 ttgcagtctt tagtcagcgt attgatttgc gcctacaacg tagaaaaata tttcgcccaa
     3721 tcattagccg ccgtcgtgaa tcagacttgg cgcaacttgg agattttgat tgtcgatgac
     3781 ggctcgacag acggtacgct tgccattgcc aaggattttc aaaagcggga cagccgtatc
     3841 aaaatccttg cacaagctca aaattccggc ctgattccct ctttaaacat cgggctggac
     3901 gaattggcaa agtcaggaat gggggaatat attgcacgca ccgatgccga cgatattgcc
     3961 gcccccgact ggattgagaa aatcgtgggc gagatggaaa aagaccgcag catcatcgcg
     4021 atgggcgcgt ggctggaagt tttgtcggaa gaaaaggacg gcaaccggct ggcgcggcat
     4081 cacaggcacg gcaaaatttg gaaaaagccg acccgacacg aagatattgc cgactttttc
     4141 cctttcggca accccataca caacaacacg atgattatga ggcgcagcgt cattgacggc
     4201 ggtttgcgtt acaacaccga gcgggattgg gcggaagatt accaattttg gtacgatgtc
     4261 agcaaattgg gcaggctggc ttattatccc gaagccttgg tcaaataccg ccttcacgcc
     4321 aatcaggttt catccaaata cagcatccgc caacacgaaa tcgcgcaagg catccaaaaa
     4381 accgccagaa acgatttttt gcagtctatg ggttttaaaa cccggttcga cagccttgaa
     4441 taccgccaaa taaaagcagt agcgtatgaa ttgctggaga aacatttgcc ggaagaagat
     4501 tttgaacgcg cccgccggtt tttgtaccaa tgcttcaaac ggacggacac gccgcccgcc
     4561 ggcgcgtggc tggattttgc ggcagacggc aggatgcggc ggctgtttac cttgaggcaa
     4621 tacttcggca ttttgcgccg attgctgaaa aaccgttgaa aaacgccgtt ttatccaaca
     4681 gacaaaaaac aggataaatt atgcaaaacc acgttatcag cttggcttcc gccgcagaac
     4741 gcagggcgca cattgccgat accttcggcg cgcacggcat cccgtttcag tttttcgacg
     4801 cactgatgcc gtctgaaagg ctggaacagg caatggcgga actcgtaccc ggcttgtcgg
     4861 cgcatcctta tttgagcgga gtggaaaaag cctgctttat gagccacgcc gtattgtgga
     4921 aacaggcatt ggacgaaggt ctgccgtata tcgccgtatt tgaagatgat gtcttgctcg
     4981 gcgaaggcgc ggagaaattc cttgccgaag acgcttggct gcaagaacgc tttgaccccg
     5041 attccgcctt tatcgtccgc ttggaaacga tgtttatgca cgtcctgacc tcgccctccg
     5101 gcgtggcgga ctactgcggg cgcgccttcc cgctgttgga aagcgaacac tgggggacgg
     5161 cgggctatat catttcccga aaagcgatgc ggtttttcct ggacaggttt gccgccctgc
     5221 cgcccgaagg gctgcacccc gtcgatctga tgatgttcag cgattttttc gacagggaag
     5281 gaatgccggt ttgccagctc gatcccgcct tgtgcgccca agagctgcat tatgccaagt
     5341 ttcacgacca aaacagcgca ttgggcagcc tgatcgaaca cgaccgcctc ctgaaccgca
     5401 aacagcaatg gcgcgattcc cccgccaaca cattcaaacg ccgcctgatc cgcgccttga
     5461 ccaaaatcag cagggaaagg gaaaaacgcc ggcaaaggcg cgaacagttc attgtgcctt
     5521 tccaataaaa ggaggagaga tggacatcgt atttgcagca gacggcagga tgcggcggct
     5581 gtttaccttg aggcaatact tcggcatttt gcgccgattg ctgaaaaacc gttgaaaaac
     5641 gccgctttat ccaacagaca aaaaacagga taaattatgc aaaaccatgt tatcagctta
     5701 gcttccgccg cagaacgcag ggcgcacatt gccgatacct tcggcaggca cgacattccg
     5761 tttcagtttt tcgacgcact gatgccgtct gaagaactga atcggatgat ggcggaattg
     5821 gtgccgggat tggcaaaaca gcacctgttg agcgaagtgg aaaaagcctg ctttatgagc
     5881 cacgccgtat tgtggaaaca ggcattggat gaaggtctgc cctatgttgc cgtatttgag
     5941 gatgatgtcc tgcttggcaa agacgcagaa aagttccttg ccgaagatac ttggttggaa
     6001 gagcgttttg ataaggattc tgcctttatc gttcgtttgg aaacgatgtt tgcgaaagtt
     6061 attgtcagac cggataaagt cctgaattat gagaaccggt catttccttt gctggagagc
     6121 gaacattggg ggacggctgg ctatatcatt tcgcgtgagg cgatgcggtt tttcttggaa
     6181 aggtttgccg ttttgccggc agagtggatt aaagcggtag attggatgat gtttacttat
     6241 ttctttgata aggaggggat gcctgtttat caggttaatc ccgccttatg tacccaagaa
     6301 ttgcattatg ccaagttcct cagtaaaaac agtatgttgg gtagcgattt ggaaaaagat
     6361 agggaacaag aaagaagaca ccgccgttcg ttgaaggtga tgtttgactt gaagcgtgct
     6421 ttgggtaaat tcggtaggga aaagaagaaa agaatggagc gtcaaaggca ggcggagctt
     6481 gagaaagctt acggcaggcg ggtcatatcg ttcaaatagt ttgtgtaaaa tatagcggat
     6541 taaaattaga aatggataca ctgtcattcc cgcgcaggcg ggaatc
//
LOCUS       DAXIFD010000109         6578 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.109, whole genome shotgun sequence.
ACCESSION   DAXIFD010000109 DAXIFD010000000
VERSION     DAXIFD010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.109"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1028
                     /locus_tag="ACFOCN_001504"
     CDS             <1..1028
                     /locus_tag="ACFOCN_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetyltransferase family protein"
                     /protein_id="HFC6970629.1"
                     /translation="GSHSLYGDILTARCNGQTTAVLPPFTTLDSRHLARFAELDGTQT
                     LDQFLHTLTIIPEYRQHILGITLNLNGGQYSSDFILKTPETHDTPKRKNTGKAAQTLE
                     HAAAKMQSAAAYLKHKNPTAAEFLRHTSEAAAELLGSKTETGAAVPNVLAPYPAAYPK
                     TLSLRNNTTVTITPILPEDAEAKQQFVRSLGPEARYTRFMTHTNELPAATLARLCNPD
                     YHCEAAWTAKDADSNIVAVVRHSRLNRNECEFGITLAEHMRGSGLAQKMMELIIQTAA
                     QQGYRTMSADILKTNTPMIKLAEKSGFTLKESDTEKNLYRAYLNLAADKTTEKTNKNL
                     RTDHKIT"
     gene            1073..1318
                     /gene="rpsP"
                     /locus_tag="ACFOCN_001505"
     CDS             1073..1318
                     /gene="rpsP"
                     /locus_tag="ACFOCN_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HFC6970630.1"
                     /translation="MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVAN
                     EKQERVRLNADRLNHWIAQGAQVSDSVAKLIKEQKAA"
     gene            1334..1843
                     /gene="rimM"
                     /locus_tag="ACFOCN_001506"
     CDS             1334..1843
                     /gene="rimM"
                     /locus_tag="ACFOCN_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748672.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HFC6970631.1"
                     /translation="MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV
                     KDGKTVSVTLEAGKVVNSELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTEEDEYYW
                     TDLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKI
                     ITADWGLDY"
     gene            1843..2592
                     /gene="trmD"
                     /locus_tag="ACFOCN_001507"
     CDS             1843..2592
                     /gene="trmD"
                     /locus_tag="ACFOCN_001507"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HFC6970632.1"
                     /translation="MLIQAVTIFPEMFDSITRYGVTGRANRQGIWQFEAVNPRKFADN
                     RLGYIDDRPFGGGPGMIMMAPPLHAAIEHAKAQSSQAAKVIYLSPQGKPLTHQKAVEL
                     AELPHLILLCGRYEGIDERLLQSSVDEEISIGDFVVSGGELPAMMLMDAVLRLVPGVL
                     GDMQSAEQDSFSSGILDCPHYTKPLEFQGMAVPEVLRSGNHGLIAEWRLEQSLRRTLE
                     RRPDLLEKRSLIPKESRILNKILQEQREIQS"
     gene            2608..2973
                     /gene="rplS"
                     /locus_tag="ACFOCN_001508"
     CDS             2608..2973
                     /gene="rplS"
                     /locus_tag="ACFOCN_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HFC6970633.1"
                     /translation="MNLIQQLEQEEIARLNKEIPEFAPGDTVVVSVRVVEGTRSRLQA
                     YEGVVIARRNRGLNSNFIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYL
                     RGLTGKAARIKEKLPARKG"
     gene            3295..4020
                     /locus_tag="ACFOCN_001509"
     CDS             3295..4020
                     /locus_tag="ACFOCN_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010361246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HFC6970634.1"
                     /translation="MSIIVENLTVSYRRRPAVHHVDITFEEHSMWAVFGPNGAGKSTF
                     LKSLMGLQPIDTGSIRLDGLTRQNIAYLPQQSDIDRSQPMTVFDLAAMGLWYEIGFFR
                     GINAVQKQRVHESLERVGMRQFAGRQIAHLSNGQFQRVLFARMLVQNAKFLLLDEPFN
                     AVDARTTYELLDVLQKCHCGGHAIIAVLHDYEQVRAYFPNTLLLAREKIAAGATETIL
                     TEPYLAQANAKMQQQESPEWCAS"
     gene            4044..4919
                     /locus_tag="ACFOCN_001510"
     CDS             4044..4919
                     /locus_tag="ACFOCN_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HFC6970635.1"
                     /translation="MNLYDLLLAPFAEFDFMRYALVSVFCLSLSAAPVGVFLVMRRMS
                     LIGDALSHAVLPGAAVGYMFAGLSLPAMGLGGVAAGMLMALLAGLVSRFTTLKEDANF
                     AAFYLSSLAIGVVLVSKNGSSVDLLHLLFGSVLAVDIPALQLIAAVSSLTLITLAVIY
                     RPLVLESIDPLFLKSVGGKGGLWHVLFLVLVVMNLVSGFQALGTLMSVGLMMLPAITA
                     RLWAKHMGALILLSVLTALLCGLSGLLISYHIEIPSGPAIILCCSVLYLFSVILGKEG
                     GILTKWLKNHRHHTT"
     gene            4996..5910
                     /locus_tag="ACFOCN_001511"
     CDS             4996..5910
                     /locus_tag="ACFOCN_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HFC6970636.1"
                     /translation="MKHLKLTLIAALLTTAATAAPLPVVTSFSILGDVAKQIGGERVS
                     IQSLVGANQDTHAYHMTSGDIKKIRSAKLILLNGLGLEAADIQRAVKQSKVSYAEATK
                     GIQPLKAEEEGGHHHDHDHDHEGHHHDHGEFDPHVWNDPVLMSAYAQNVAEALIKADP
                     EGKVYYQQRLGNYQMQLKKLHSDAQAAFNAVPAAKRKVLTGHDAFSYMGKRYHIEFIA
                     PQGVSSEAEPSAKQVAAIIRQIKREGIKAVFTENIKDTRMVDRIAKETGVNVSGKLYS
                     DALGNAPADTYIGMYRHNIKALTNAMKQ"
     gene            complement(6190..>6578)
                     /locus_tag="ACFOCN_001512"
     CDS             complement(6190..>6578)
                     /locus_tag="ACFOCN_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6970637.1"
                     /translation="DTYVFGKGFGQDTVYNYHVDKNSDTMHFKGFKAADVHFIRSGSD
                     LVLSASEQDNVRISGFFYGENHRVDTFVFDDAAISNPDFAKYINAGNNLVQSMSVFGS
                     NTAATGGNVDANTQSVQQPLLVTPSA"
BASE COUNT         1798 a         2006 c         1436 g         1338 t
ORIGIN      
        1 tcggcagcca ctccctctat ggcgacatcc tgaccgcacg ttgcaacgga caaaccactg
       61 ccgtactccc gccgtttacc acgctcgaca gccgccacct tgcccgcttt gccgaactcg
      121 acggcacaca aaccctcgac cagttcctgc acacactgac catcattccc gaataccgcc
      181 aacacattct cggcatcacc ctcaacctaa acggcggaca atacagcagc gatttcatct
      241 taaagacacc cgaaacacac gacacgccca aacgcaagaa cacaggcaaa gccgcccaaa
      301 ccctcgaaca tgccgccgca aaaatgcaga gtgccgccgc atacctgaaa cacaaaaacc
      361 cgacagccgc cgaatttctc cgccacacaa gcgaagccgc cgcagaactg ctcggcagca
      421 aaaccgaaac cggagcagcc gtacccaacg tacttgcccc ctatcccgca gcatacccca
      481 aaacactgtc cctaagaaac aacacgaccg ttaccattac ccccattttg cccgaagacg
      541 cagaagccaa acagcagttc gtccgcagcc tcggtcccga agcacggtac acacgcttca
      601 tgacccacac caacgaactg cccgcagcca cgttggcacg cctgtgcaac cccgattacc
      661 actgtgaagc cgcatggacg gcaaaggatg ccgacagcaa catcgtcgcc gtcgtccgcc
      721 acagccgcct gaaccgcaac gaatgcgaat tcggcatcac actggcggaa catatgcgcg
      781 gcagcggact ggcacagaaa atgatggaac tcatcatcca aaccgccgca cagcaaggct
      841 accggactat gagtgccgac attctcaaaa ccaatacccc catgatcaaa cttgctgaaa
      901 aatcaggatt taccctcaag gaatcggaca ccgaaaaaaa cctgtaccgc gcatatctga
      961 accttgcggc agacaaaaca acagaaaaaa caaataaaaa cttgcgcacc gaccacaaaa
     1021 taacctaaaa tcggcagttt ccatatatcc gattttctca aaaggactca aaatggtagt
     1081 tatccgtttg gcacgcggcg gctcgaaaca ccgccccttc tacaacgtca tcgttactga
     1141 ctcacgcagc cgccgcgacg gccgcttcat cgaacgcgta ggcttctaca accccgtagc
     1201 caacgaaaaa caagagcgcg tccgcctcaa tgcagaccgc ctgaaccact ggattgcaca
     1261 aggcgcgcaa gtcagcgact ccgttgcaaa actgattaaa gaacaaaaag ccgcctaatt
     1321 cacatttgcc gccatgacag acactcaaaa ccgggtagcc atgggctaca tcaaaggcgt
     1381 attcggcata aaaggctggt tgaaaattgc cgccaacacc gaatattccg acagcctttt
     1441 ggactacccc gagtggcatt tggtcaagga cggcaaaacc gtcagcgtta cccttgaagc
     1501 cggaaaagtc gtcaacagcg aactccaagt caaattcgaa ggcataaacg accgcgactt
     1561 ggcattctca ttgcgcggtt acaccatcga aataccccgt gaagcattcg ccccgacaga
     1621 agaagacgaa tactactgga cagacttggt cggcatgacc gtcgtcaaca aagaccatac
     1681 cgttttaggc aaggtaagca acctgatgga aaccggcgca aacgacgtat tgatgattga
     1741 cggagaacac gggcagattc tgattccgtt cgtttcccaa tatatcgaaa ccgtcgatac
     1801 cggcagcaag attattactg ccgactgggg tttggactac tgatgcttat ccaggcagtt
     1861 accattttcc ccgaaatgtt cgacagcatt acccgctacg gcgtaacggg acgcgcgaac
     1921 agacagggaa tctggcagtt tgaagcagtc aatccccgaa agtttgccga caacagattg
     1981 ggctacatcg acgaccgccc gttcggcggc ggcccgggaa tgattatgat ggctccgccg
     2041 cttcatgcag caatagaaca cgccaaagca caatcctccc aagctgcaaa agtcatctac
     2101 ctcagccccc aagggaaacc gctgacacac caaaaagcgg tagaactggc agaacttccg
     2161 catctgattc tgctgtgcgg acggtatgag ggcatagacg aaaggcttct gcaaagcagc
     2221 gtcgatgaag aaatcagcat cggagacttc gttgtttccg gcggagagct tcccgccatg
     2281 atgctgatgg atgcggtatt gaggctcgta cccggcgtat tgggcgatat gcagtctgcc
     2341 gaacaagatt cgttctcaag cggcattttg gactgccccc actacaccaa acccttagaa
     2401 tttcaaggca tggctgttcc ggaagtatta cgttccggca atcatggctt gatagcggaa
     2461 tggcggttgg aacaatcgct gcgccgcacc ttggagcgca gacccgatct tttggaaaag
     2521 cgcagtttaa tcccaaagga atcccgcatc ttgaataaaa tcctacaaga gcaacgggaa
     2581 atccaatcat aatttaggaa aaaaacaatg aacctgattc aacagctcga gcaagaagaa
     2641 attgcccgcc tgaacaaaga aatccccgaa ttcgcaccgg gcgacaccgt agtcgtatcc
     2701 gtacgcgtcg tggaaggtac ccgcagccgt ctgcaagcct acgaaggcgt tgtcattgca
     2761 cgccgcaacc gtggtctgaa cagcaacttc atcgtccgta aaatttccag cggcgaaggt
     2821 gttgaacgta ctttccaact gtactctccg accgtcgaaa aaatcgaagt caaacgccgt
     2881 ggcgacgtac gccgtgccaa actgtactac ctgcgcggtc tgaccggcaa agctgcacgc
     2941 atcaaagaaa aactgcctgc acgcaaaggt tgattcaaac ccgttttccc caatgccgtc
     3001 tgaaccttct gacggcattt cttattgccg caacatccgc aacggaacag caccaagaag
     3061 cacacccctt ccggcacatc ccgaatcccc gtccgaaccg aacaaaattt acagaccaaa
     3121 cgttatacag tatcatatca gccatataat aataaccgct ttaccgcctt ccctttcaaa
     3181 accgcaaatc atcatgacac cttccctttt actatcagga ttgaccttcc gcctcgtcct
     3241 tgccctgatt gccgtatccc ttttatgggg cgtttacttt tgggcagtat ccgcatgagc
     3301 atcattgtcg aaaacctgac cgtcagctac cgccgccgac ctgccgtgca ccatgtggac
     3361 attacttttg aagaacatag tatgtgggcg gttttcggtc ccaacggcgc agggaaatcc
     3421 acctttctca aatccttaat gggattgcag cctatcgata cgggcagcat ccggctggac
     3481 ggattgaccc gtcagaacat tgcctacctt ccccagcagt ccgacatcga ccgctcgcag
     3541 cccatgaccg ttttcgactt ggcggcaatg gggctatggt atgaaatcgg ttttttcaga
     3601 ggaataaatg ccgttcaaaa acaacgcgtt cacgaatctt tggaacgcgt cgggatgcgg
     3661 cagtttgccg gccgccaaat cgcccacctc tcaaacggac aattccagcg tgtccttttt
     3721 gcccgaatgc tggttcaaaa cgccaaattc ctacttctag acgaaccttt caacgctgtt
     3781 gatgcacgga cgacctacga acttctcgac gtattgcaga aatgccattg cggcggacac
     3841 gccatcatcg ccgtactgca cgattacgaa caagtccgtg cctactttcc caataccctg
     3901 ctgctcgccc gcgaaaaaat tgcggcaggc gcaaccgaga ccattctgac agaaccctac
     3961 ctcgcccaag ccaacgccaa aatgcagcaa caggaaagcc ccgagtggtg cgcgtcataa
     4021 atgccgtctg aaaccgaaaa accatgaacc tctacgacct gctccttgcc ccctttgcag
     4081 aatttgactt tatgcgctac gccctcgtat ccgtcttctg cctgtccctc agtgccgcac
     4141 ccgtcggcgt attcctcgtc atgcgccgta tgagcctgat aggcgacgca ttgagccacg
     4201 ccgtcctgcc cggtgccgcc gtcggctaca tgtttgccgg cttaagcctg cccgccatgg
     4261 gtttgggcgg cgtagccgca ggtatgctga tggcactgct tgccggactc gtcagccgct
     4321 tcaccaccct gaaagaagat gccaactttg ccgcctttta tctcagcagc ctcgccatcg
     4381 gtgtagtcct cgtcagcaaa aacggcagca gcgtcgatct gctgcatctg cttttcggct
     4441 ctgtacttgc cgtcgatatt cctgccctgc agctcatcgc cgccgtatcc agcctcacgc
     4501 tcattaccct tgccgtcatc taccgcccgc tcgtactcga aagcatcgac cccctgtttc
     4561 tcaaatctgt cggcggcaaa ggcgggcttt ggcacgtcct ctttctcgtc ctggtcgtca
     4621 tgaacctcgt atccggcttt caagccctcg gcacactcat gtccgtcgga ctcatgatgc
     4681 tgccagccat taccgcccgc ctgtgggcga agcacatggg cgcactcatc ctcctatccg
     4741 ttctgacagc cctgctgtgc ggcttgagcg ggctgctcat ttcctaccac atcgaaatcc
     4801 cttccggccc cgccatcatc ctctgttgca gcgtccttta tctcttttcc gtcatactcg
     4861 gcaaagaagg cggcattctg accaaatggc tcaaaaacca ccgccaccac accacctgac
     4921 cccgcaagcc gcttgaacaa acaggcggct tgttttacca taacagatgt tacgttatat
     4981 cacaggagaa cagttatgaa acacctcaaa ctcaccctta ttgccgcatt gctgaccact
     5041 gccgcaactg ccgcccccct tccggttgta accagtttca gcattttagg cgacgttgcc
     5101 aaacaaatcg gcggagagcg cgtatccata caaagtttgg tcggagccaa ccaagatact
     5161 catgcctatc acatgaccag tggcgacatt aaaaaaatcc gcagtgcaaa actcatcctg
     5221 ctcaacggct taggacttga agccgccgac atccaacgtg ccgtcaaaca gagcaaagta
     5281 tcctatgccg aagcgaccaa aggcatccaa cccctcaaag ccgaagaaga aggcggacac
     5341 catcatgacc acgaccatga ccacgaagga caccaccatg accacggcga atttgacccg
     5401 cacgtctgga acgaccccgt cctcatgtcc gcctatgccc aaaacgtcgc cgaagccctg
     5461 ataaaggccg accccgaagg caaagtttat tatcaacaac gcttgggcaa ctaccaaatg
     5521 cagctcaaaa aactgcacag cgacgcacaa gccgcattta acgccgtccc tgccgccaaa
     5581 cgcaaagtcc tgaccgggca cgatgccttt tcctacatgg gcaaacgtta ccatatcgaa
     5641 ttcatcgccc cgcaaggtgt gagcagcgaa gccgagcctt cagccaaaca agtcgccgcc
     5701 atcatccgac aaatcaaacg cgaaggcatc aaagccgtat tcaccgaaaa tatcaaagac
     5761 acccgcatgg ttgaccgtat cgccaaagaa accggtgtca acgtcagcgg caaactgtat
     5821 tccgacgcac tcggcaacgc gcccgcagac acctacatcg gaatgtaccg ccacaacatc
     5881 aaagccttga ccaacgcgat gaagcaataa aaccgtttga ttggtttgaa tttgaaaagg
     5941 caaaaggccg tctgaaaatt atagtggatt aacaaaaatc aggacaaggc gacgaagccg
     6001 cagacagtac agatagtacg gtaaggcgag gcaacgctgt actggttttt gttaatccac
     6061 tatattgcta gaagtgcacc gattaaggtt aattaaaata cgacccttat cccaatatta
     6121 agaaaaacag caatcaaaat aaacttgatt gctgtttttc agtttaagcc atgaatgtga
     6181 ttaggctcct tatgcagatg gcgttaccaa taacggctgc tgtacggatt gtgtattggc
     6241 atccacattt cctcctgtcg ccgcagtatt agaaccgaac acagacatag actgtaccaa
     6301 attattgcca gcattaatat acttggcaaa atctggatta ctgatagctg catcatcaaa
     6361 gacaaatgta tctacacgat ggttttcacc atagaagaat ccggaaatac gtacgttgtc
     6421 ttgttcagaa gcgctaagca ccaaatcact tccggaacgg ataaaatgaa catctgctgc
     6481 tttaaatcct ttaaagtgca tagtgtcaga gtttttatcc acatggtaat tatagaccgt
     6541 atcctgaccg aagcctttgc cgaagacata agtatccg
//
LOCUS       DAXIFD010000110         6458 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.110, whole genome shotgun sequence.
ACCESSION   DAXIFD010000110 DAXIFD010000000
VERSION     DAXIFD010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6458
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.110"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            134..343
                     /locus_tag="ACFOCN_001513"
     CDS             134..343
                     /locus_tag="ACFOCN_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HFC6970638.1"
                     /translation="MPYVNIKVTGGKEAPTAAQKAELIGGVTELLARVLGKNPETTVV
                     VIDEVDTDNWGIGGKSVSERRKEGR"
     gene            432..1646
                     /locus_tag="ACFOCN_001514"
     CDS             432..1646
                     /locus_tag="ACFOCN_001514"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HFC6970639.1"
                     /translation="MDKFPKSAKLDHVCYDIRGPVHKKALQLEEEGNKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTSQGYCDSKGLYSARKAIVHYYQTKGLRDITVDDVYIGN
                     GVSELITMSMQALLNDGDEILIPAPDYPLWTAAATLAGGTVRHYLCDEENGWFPNLAD
                     MEAKITPKTKAIVVINPNNPTGAVYSREILLEIAELARKHGLIIFADEIYDKILYDGA
                     VHHHIAALAPDLLTVTFNGLSKSYRVAGFRQGWMVLNGPKHHAKGYIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFILPGGRLLEQRNRAWELVSQIPGVSCVKPMGAMYM
                     FPKIDTEMYRIHDDMKFVYDLLVREKVLLVQGTGFNWIKPDHFRIVTLPYVHQIEEAM
                     GRLARFLQTYRQ"
     gene            complement(1733..4312)
                     /gene="clpB"
                     /locus_tag="ACFOCN_001515"
     CDS             complement(1733..4312)
                     /gene="clpB"
                     /locus_tag="ACFOCN_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HFC6970640.1"
                     /translation="MRYDKLTAKFQQALAEAQSLALAADGSCLEAGFVLKALLDDQNS
                     GAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGDILPSRELQAVLNLMDKAATKRG
                     DAYIASELFLLALVQQNDAAGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
                     LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNGEVPESLRNKRLLVLDLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIF
                     IDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQ
                     KVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAID
                     LIDEAASRVKMEKETKPEAMDKIDRRLIQLRMEKAHVEKEKDDASKKRLELIDEEING
                     LQKEYADLDEIWKAEKAISDGAANIKKQIDEVKIKIEQAKRQGDLALASKLMYEDLEH
                     LEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSRMTGIPVSKMMEGERDKLLKM
                     EEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAG
                     FLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDE
                     VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQMSIQDYEAV
                     KEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLTV
                     SDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEADGDRL
                     KFA"
     gene            4573..5583
                     /gene="trpS"
                     /locus_tag="ACFOCN_001516"
     CDS             4573..5583
                     /gene="trpS"
                     /locus_tag="ACFOCN_001516"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HFC6970641.1"
                     /translation="MSKKRVLTGVTTTGIPHLGNYVGAIRPAVRAAQNPDTESFLFLA
                     DYHGIIKCHEPEMIHQSTQAVAATWLACGLDPERTTFYRQSDIPEVMELNWILTCITA
                     KGLMNRAHAYKAAVQANAENGQEDPDFGVEMGLFSYPILMTADILMFNANEVPVGRDQ
                     IQHVEMARDIAGRFNHRFRELFTLPEVKIDENVELLVGLDGRKMSKSYGNTIPLWEND
                     KKTQKSVNKIITNMKEPGEPKQPDESPLFEIYKAFSTPSETVEFTKMLADGLAWGEAK
                     KLLAAKINAELAEPRERYNELTADPSQIEEILQAGAQKARKEARELLDKVRDAVGIRP
                     LK"
     gene            5589..5930
                     /locus_tag="ACFOCN_001517"
     CDS             5589..5930
                     /locus_tag="ACFOCN_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970642.1"
                     /translation="MPSEPLKGLPEQNVVRLTGKHPNDLEAVSGKCMETDDKGGPVGW
                     AENGVCHTLFAKLVGNIAEDGGKLTDYLISHSALQPYQAGKSGYAAVQNGRYVLEIDS
                     EGAFYFRRRHY"
     gene            6250..>6458
                     /locus_tag="ACFOCN_001518"
     CDS             6250..>6458
                     /locus_tag="ACFOCN_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970643.1"
                     /translation="MKKLLIAAMMAAALAACSQEAKQEVKEAVQAVESDVKDTAASAA
                     ESAASAVEEAKDQVKDAAADAKASA"
BASE COUNT         1536 a         1692 c         1633 g         1597 t
ORIGIN      
        1 tgcggcttcg tcgccttgtc ctgatttttg ttaatccgct atatcgattt gaatttttca
       61 gaaaatgaag cggacgtttg ggcggaggca acttgtttga taagatagca atatttcaaa
      121 acggagaaag atcatgcctt atgtcaatat taaagtaacc ggcggcaagg aagcaccgac
      181 tgccgcgcaa aaagcggaac tgatcggcgg cgtaaccgaa ttgctggcac gcgtgctggg
      241 caaaaatccc gaaacaacgg ttgtcgtgat tgatgaagtg gataccgata actggggaat
      301 aggcggcaaa agcgtcagcg aacggcgcaa agagggcagg taaaaagcct gaaaatctcg
      361 gtttgatgct ttaaattccg cgtgaaaaag agtacattcc cacccattgc ccaaaattta
      421 cggaacacat catggataaa tttcccaagt ctgcaaagct cgatcacgtc tgttacgaca
      481 tacgcgggcc ggttcacaaa aaagcccttc agttggaaga ggagggcaat aaaatcctta
      541 aactcaatat cggcaaccct gcgccgttcg gctttgaagc ccctgatgaa atcttggtcg
      601 atgtcatccg caacctgccg acttcgcaag gctattgcga ttctaaaggg ctgtattccg
      661 cccgcaaagc cattgttcac tactatcaga ccaaaggttt gcgcgatatt acggttgatg
      721 atgtctatat cggcaacggc gtgtccgagc tgattacgat gtctatgcag gcattgctca
      781 acgacggcga cgaaatcctg attcccgcgc ccgactaccc tttgtggacg gcggcggcaa
      841 cgcttgcggg cggtacggta cgccattatc tgtgcgacga agaaaacggc tggttcccca
      901 accttgccga tatggaagcc aaaatcacgc ccaaaaccaa agccatcgtc gtcatcaatc
      961 ccaataatcc gacaggcgcg gtgtacagca gggaaatcct gttggaaatc gccgaactgg
     1021 cgcgcaagca cggtttgatt attttcgccg acgagattta cgataaaatc ctttatgacg
     1081 gcgcggttca ccaccacatc gccgcgcttg cccccgacct tttgacggta acgttcaacg
     1141 gtttgtccaa atcctaccgc gtcgccggct tccgccaagg ctggatggtg ctcaacgggc
     1201 cgaaacatca cgcaaaaggt tacatcgagg gtttggatat gctctcgtct atgcgcctgt
     1261 gtgccaatac gccgatgcag cacgcgattc agacggcatt gggcggctat cagagcatca
     1321 acgaatttat tttgcccggc gggcggcttt tggaacagcg caacagggcg tgggaactgg
     1381 tcagccaaat ccccggcgtg tcctgcgtca aaccgatggg cgcgatgtat atgttcccaa
     1441 aaatcgatac cgaaatgtac cgtatccacg atgacatgaa attcgtttac gatttgctgg
     1501 tgcgcgaaaa agtcttgctg gtacagggaa cggggtttaa ttggattaaa cctgaccatt
     1561 tccgcattgt cacgctgcct tacgtccatc agattgaaga ggcgatgggc aggttggcaa
     1621 gattcctgca aacctaccgc caataagggg acggtttgtc tgccgaggat aaaaaatgcc
     1681 gtctgaaacg gagattcccg tttcagacgg cattttcaac agcaggaacg aatcaggcaa
     1741 atttcagtct gtcgccgtcg gcttctaccc tgatttcgct ttcgggcgca tagtttccgg
     1801 caagcagggc ttttgccagc gggttttcga tttccgactg gatggcgcgt ttgagcggac
     1861 gtgcgccgta aatcgggtcg aaaccggctt tggcgatgat gtccagtgcg gcatcggaaa
     1921 cagtcaggcg caggttttgt ttttccaaac gtttttccaa acctttgagc tggattttcg
     1981 caatgctgcg gatgtttgcc tgatccaaac cgtggaacac gaccacttcg tcgatgcggt
     2041 tgatcatttc aggacggaaa tgttctttca catcctccat cacaacttct tttaccgctt
     2101 cgtaatcctg aatgctcatt tgttggatgt gctggctgcc gatgttggaa gtcatcacaa
     2161 tcacggtatt tttaaaatct accgtcctgc cttgcccgtc ggtcaaacga ccgtcatcca
     2221 atacttgcag caggatgttg aacacatcgg gatgggcttt ttccacttcg tccagcagaa
     2281 tcacgctgta cggtttgcgg cgcacttgtt cggtcaggta gccgccttct tcgtagccga
     2341 catagcccgg aggcgcaccg atcaggcgtg caacggcgtg tttttccata tattcggaca
     2401 tatcgatgcg aatcagatga tcttcgctgt cgaacagaaa gcctgccagg gctttacaca
     2461 actcggtttt acccacgccg gtcgggccca agaacaggaa gctgccgtaa ggcttgttcg
     2521 gatcggcaag accggagcgg ctgcggcgga tagcgtcgga cacggcacgc acggcttcgt
     2581 cctgtccgac cacgcggcgg tgcaatactt cttccatttt cagcagtttg tcgcgttcgc
     2641 cttccatcat tttggatacg ggaatgccgg tcatacggga aaccacctct gcgatttcct
     2701 ctgcgccgac attattacgc aagagtttgt ttgccggttt tgtgctgtcc gtatctgccc
     2761 gttcggcggc tgcacgctgt ttttccaaat gctccaaatc ttcatacatc aattttgaag
     2821 ccagtgccaa atcgccttgc cgttttgcct gttcgatttt aattttgact tcgtcaattt
     2881 gtttcttaat attagcagca ccgtctgaaa ttgctttttc ggctttccag atttcgtcta
     2941 aatcggcgta ttctttttgc agaccgttga tttcctcgtc tatcagttcc aaacgttttt
     3001 tgctggcatc gtctttttct ttttcaacgt gcgccttttc catccgaagc tgaattagac
     3061 ggcggtcgat tttgtccatt gcttccggct tggtttcttt ttccatcttg acacggctgg
     3121 cggcttcgtc aatcaaatca atcgctttat caggcaggaa gcggtcggta atgtagcggt
     3181 cgctcaactc cgctgcggca acgatagcag ggtcggtaat atcgataccg tggtggattt
     3241 cataacgctc ctgtaaaccg cgcaagatag cgatggtgtc ttctacactt ggctcgccaa
     3301 ccaatacttt ttggaagcgg cgttcgagtg ccgcgtcttt ttcgatgtat tggcggtatt
     3361 cgtccaaggt ggtcgcgccg atacagtgca attcgccacg tgccaaagcc ggtttcagca
     3421 tattgcccgc atccatcgca ccgtcggttt tgcctgcgcc gaccaaagta tggatttcgt
     3481 cgatgaaaat cagagtgttg ccgtcgtctt tcgccaagtc gttcaacacg cctttcaagc
     3541 gttcttcaaa ttcgccgcgg tatttcgcgc cggcaatcaa tgccgccaag tccaaaacca
     3601 gtaggcgttt gttgcgcagg gattcgggta cttcgccgtt gacgatgcgt tgtgccaaac
     3661 cttcgacgat ggcggtttta cccacgcccg gttcgccaat cagcacaggg ttgtttttgg
     3721 tacggcgttg caatacctga atcgcacggc ggatttcgtc gtcacggccg ataacggggt
     3781 cgagcttacc gtctcgggcg cgttgggtca gatcgagcgt atattttttc aaagcatcgc
     3841 gttggtcttc ggcattggca tcgttcacgt tttgtcctcc tcgtaccgcg tcaatcgcgg
     3901 cattgatgtt ttgttcggtc gcgccggctt ctttcaaaat tttgccggcc gcatcgttct
     3961 gctgcaccaa ggcaagcagg aaaagttcac tggcgatata ggcatcgccg cgtttggttg
     4021 cggctttgtc catcaggttc aacaccgcct gcaattcgcg gctgggcaga atgtcgccgc
     4081 cctggccgga cactttcggc aggctgttca aatgctgctg caaacgctgt ttcacctgcg
     4141 gcacgttcac gcccgcatga gccaagagcg cggcagcacc gctgttttgg tcgtcaagca
     4201 gggctttcag cacaaagccc gcttccagac agctgccgtc cgcagccaac gccaaactct
     4261 gagcttctgc aagggcctgt tggaatttgg cggttaattt gtcgtatcgc atttttgttt
     4321 ccttttcaaa atgtccgctg tcgaagccta tatgtgcata attgtggata actcaagttc
     4381 tgttttctgt ttttctatat ttaattcgat atatcattga atttaaagta tataaaaatg
     4441 tataataatg tgtataacta tatcttctta atatggaaaa gtctgttgtc ggctggatgt
     4501 aggtggcaaa tcgggtataa tcggcgcatc tttttccctt tcagacggca ttgatgccgc
     4561 aaggacattt ttatgagcaa aaaacgagtt ctgaccggcg taaccaccac cggcatcccg
     4621 catctgggca actacgtcgg tgctatccgc cccgccgtcc gcgcggcgca aaaccctgat
     4681 accgaatcct tcctcttcct cgccgattac cacggtatca tcaaatgcca cgagccggag
     4741 atgattcacc aatccaccca agccgttgcc gccacttggc ttgcctgcgg actcgacccc
     4801 gagcgcacca ccttctaccg ccaaagcgac attcccgaag tgatggaatt gaactggatt
     4861 ctgacctgca tcaccgccaa gggtttgatg aaccgcgccc acgcctacaa agccgccgtg
     4921 caggcaaatg cggaaaacgg gcaggaagac cccgatttcg gcgtggaaat gggtttgttc
     4981 agttatccga ttctgatgac tgccgatatt ctgatgttca acgccaacga agtccccgtc
     5041 gggcgcgacc aaatccaaca cgtcgaaatg gcgcgcgaca tcgccggccg cttcaatcac
     5101 cgcttccgag aactcttcac cctgcccgaa gtgaaaatcg acgaaaacgt cgaactcttg
     5161 gtcggtttgg acggacgcaa aatgtccaaa tcctacggca acaccattcc gctttgggaa
     5221 aacgacaaaa aaacccaaaa atcggtcaac aaaatcatca ccaatatgaa agagccgggc
     5281 gagccgaaac agcccgacga aagcccattg tttgaaatct acaaagcctt ctccacgccg
     5341 tctgaaacgg tggaatttac gaaaatgctt gccgacggcc tggcttgggg cgaggcaaaa
     5401 aaacttttgg cggcgaaaat caacgccgaa ctcgccgaac cgcgcgaacg ctacaacgag
     5461 ctgaccgccg acccttcgca aatcgaagag attttacagg caggtgcgca aaaagcgcgt
     5521 aaagaagcac gcgaattgtt ggacaaagta cgcgatgcgg tcggcatccg cccgttgaaa
     5581 taaacccgat gccgtccgaa cctcttaaag gcttgccgga acaaaacgtc gtccggctga
     5641 ccggcaagca tcccaacgac ttggaagccg tcagcggcaa atgcatggaa accgacgata
     5701 agggcggtcc ggtaggctgg gcggaaaacg gcgtgtgcca taccttgttt gccaaactgg
     5761 tgggcaatat cgccgaagac ggcggcaaac tgacggatta cctgatttcg cattccgccc
     5821 tgcaacccta tcaggcaggc aaaagcggct atgccgccgt gcagaacgga cgctatgtgc
     5881 tggaaatcga cagcgagggg gcgttttatt tccgccgccg ccattattga ggtattcgga
     5941 catcccggaa tatatttggg tttttcaaac cttgcgaaaa aaagtccgca ccgcagggaa
     6001 actcaaaagg agggggatat gtgttacaat tttccgaact gttttcataa aatagttttc
     6061 ggacgtgttt caatatggca ttgatgccgc cttattgttc gagaaaaaaa cctttatatt
     6121 taaatataat gggttttaac taaacgggaa accgttttct ctccggccga tgggcaaaat
     6181 cagccgattg atggaacacg gttcgatttt taagcaaaac cttaatcaac aactcaagaa
     6241 ggataagaca tgaaaaaatt attgattgcc gcaatgatgg cggctgcctt ggcagcttgt
     6301 tcgcaagaag ccaaacagga ggttaaggaa gcggttcaag ccgttgagtc cgatgttaaa
     6361 gacactgcgg cttctgccgc cgagtctgcc gcttctgccg tcgaagaagc gaaagaccaa
     6421 gtcaaagatg ctgcggctga tgcaaaggca agtgccga
//
LOCUS       DAXIFD010000111         6434 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.111, whole genome shotgun sequence.
ACCESSION   DAXIFD010000111 DAXIFD010000000
VERSION     DAXIFD010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6434
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.111"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            109..1650
                     /locus_tag="ACFOCN_001519"
     CDS             109..1650
                     /locus_tag="ACFOCN_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6970644.1"
                     /translation="MDGRRWAVWGAFALLPSAFLAAMVVAPLWAVAAYDGLAWRAVLS
                     DAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLV
                     AGVGVLALFGADGLLWRGWQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTAR
                     TLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQL
                     VMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRRACSDKAVSPVMPSEPQSVGEYVLL
                     AFAAAVLSVCCLFPLLAIVVKAWSAGESWRVLMESETWQAVWNTLRFSAAAVFAAAVL
                     GVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPF
                     VAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEF
                     AATLFLSRPEWQTLTTLIYAYLGRAGEDNYARAMVLTLLLAAFALGIFLLLDGGEGGK
                     RTETL"
     gene            1679..2278
                     /locus_tag="ACFOCN_001520"
     CDS             1679..2278
                     /locus_tag="ACFOCN_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class carbonic anhydrase"
                     /protein_id="HFC6970645.1"
                     /translation="MSELDNILAHNRQFVESGEYEKYFTDKYPERGLAVLSCMDARII
                     GLLPDALGLKNGDAKLIKNAGALVTHPWGSVMRSLLVAVFELKVREIMVIAHHDCGMQ
                     GLNAEEFLGRVRESRIPEDRIETLRYAGIDLDGWLTGFDNVEDSVRHTVDLIRNHPLM
                     PRHIAVHGLVIHPVTGKLTLVVDGSVSDGMDLSEGMETS"
     gene            2275..2880
                     /gene="nadD"
                     /locus_tag="ACFOCN_001521"
     CDS             2275..2880
                     /gene="nadD"
                     /locus_tag="ACFOCN_001521"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HFC6970646.1"
                     /translation="MKKIGLFGGTFDPIHNGHLHIARAFADEIGLDAVVFLPAGGPYH
                     KDAASASAADRLAMVELATAEDARFAVSDCDIVREGATYTFDTVQIFRQQFPSAQLWW
                     LMGSDSLMKLHTWKKWQMLVRETNIAVAMRQGDSLHQTPRELHAWLGKSLQDGSVRIL
                     SAPMHNVSSTEIRRNLASQGVSDGIPPAAARYIREHGLYEK"
     gene            2939..3325
                     /gene="rsfS"
                     /locus_tag="ACFOCN_001522"
     CDS             2939..3325
                     /gene="rsfS"
                     /locus_tag="ACFOCN_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HFC6970647.1"
                     /translation="MNEQELQDLQKMVGVAVNALEDIKAKDISVLETQDKTSLFARMI
                     IASGDSTRQVKALANNVAVDLKEAGFEILSTEGDSGEWTLVDAGDLVVHVMLPAVRDF
                     YDIDTLWGGEKPSFHAGMQKPWHAAD"
     gene            3379..3849
                     /gene="rlmH"
                     /locus_tag="ACFOCN_001523"
     CDS             3379..3849
                     /gene="rlmH"
                     /locus_tag="ACFOCN_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HFC6970648.1"
                     /translation="MNITVLAVGTKMPRWVDEAVAEYAKRFGRDVAYVLKEIKPEKRG
                     AGVNAAQGMAAEEKRILEAIPQGAFLVVLDERGKAPTSVELAEHLKTWQQNGEHVCFV
                     IGGADGMTDRLKQQARMMMRLSSLTLPHGMVRVLLTEQLYRAASILHNHPYHRE"
     gene            3924..4190
                     /locus_tag="ACFOCN_001524"
     CDS             3924..4190
                     /locus_tag="ACFOCN_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HFC6970649.1"
                     /translation="MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTR
                     HQTMLINENRLSLADPRAREYLAQQMEQYFFGDGADAVQGYVPQ"
     gene            4347..5030
                     /locus_tag="ACFOCN_001525"
     CDS             4347..5030
                     /locus_tag="ACFOCN_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HFC6970650.1"
                     /translation="MQHDVYDYTAHTVSKNTVLQKTYRLLGFSFIPAAAGAALAANAG
                     FNFYAAFGSRWIGFAVVLAFFYGMIHFIEKNRYSNTGVTLLMVFTFGMGVLIGPVLQY
                     ALHIADGAKIVGIAAAMTAAVFLTMSALARRTRLDMNALGRFLTVGAVILMVAVVANL
                     FLGIPALALTISAGFVLFSSLMIMWQVRTVIDGGEDSHISAALTLFISLYNIFSSLLN
                     ILLSLNGED"
     gene            5154..5666
                     /gene="coaD"
                     /locus_tag="ACFOCN_001526"
     CDS             5154..5666
                     /gene="coaD"
                     /locus_tag="ACFOCN_001526"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HFC6970651.1"
                     /translation="MLPNTPRRAVYAGSFDPPTLGHLWMIRQAQSMFDELIVAIGINP
                     DKRSTYTVAERQDMLCDITKMFPNVRTDVFENRFLVHYAREVDAGFIVRGIRSASDYE
                     YERSMRHINSDLAPEISTVFLMPPREIAEVSSTMVKGLVGPEGWTETIHRYVPQAVYE
                     KILAEHQHEN"
     gene            5698..6351
                     /locus_tag="ACFOCN_001527"
     CDS             5698..6351
                     /locus_tag="ACFOCN_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HFC6970652.1"
                     /translation="MLEILFRHQDFVAINKPGGISVHQDSGETGLARTLAIQLGVERV
                     WLLHRLDKQTSGILLFALNRESASALSGQFAGKSIKKTYLALSDRKPSKKQGWIKGGM
                     EKSRRGMWKLTRNTENIAVTRFHSISIAEKLRLFILEPHTGKTHQLRVAMKSLGSPIL
                     GDSLYGGTESETMFLYAWKIQFAYQNRQIEIVAPLKNEWQTENISHALEEFYMAKAG"
BASE COUNT         1402 a         1707 c         1859 g         1466 t
ORIGIN      
        1 ttcagacggc gggaggaagg cggatacggt atgtagtcgg attgaaatat acggtatgtg
       61 gggcttttgg gtacaatcgc aacatcagtg tttcaagtgg ggaaggcgat ggatggacgg
      121 cgttgggcgg tatggggtgc ttttgccctg ctgccttcgg cttttttggc ggcaatggtc
      181 gttgcgcctt tgtgggcggt ggcggcgtat gacggtttgg cgtggcgcgc ggtgctgtcg
      241 gatgcctata tgctcaaacg tttggcgtgg acggtatttc aggcagcggc aacctgtgtg
      301 ctggtgctgc ctttgggcgt gcctgtcgcg tgggtgctgg cgcggctggc gtttccgggg
      361 cgggctttgg tgctgcgcct gctgatgctg ccgtttgtga tgcccacgtt ggtggcgggc
      421 gtgggcgtgc tggctctgtt cggggcggac ggtctgttgt ggcgcggctg gcaggatacg
      481 ccgtatctgt tgttgtacgg caatgtgttt tttaacctgc ccgtgctggt cagggcggcg
      541 tatcaggggt ttgtgcaagt gcctgcggca cggcttcaga cggcacggac gttgggcgcg
      601 ggggcgtggc ggcggttttg ggacattgaa atgcccgttt tgcgcccgtg gcttgccggc
      661 ggcgtgtgcc ttgtcttttt gtattgtttt tccgggttcg ggctggcatt gctgctgggc
      721 ggcagccgtt atgccacagt cgaagtggaa atttaccagt tggtcatgtt cgaactcgat
      781 atggcggttg cttcggtgct ggtgtggctg gtgttggggg taacggcggc ggcagggttg
      841 ctgtatgcgt ggttcggcag acgcgcgtgt tcggataagg cagtttctcc tgtgatgccg
      901 tctgaaccgc agtcggtcgg ggaatatgtg ctgctggcgt ttgcggcggc ggtgttgtct
      961 gtgtgctgcc tgtttccttt gttggcaatt gttgtgaaag cgtggtcggc cggcgaatcg
     1021 tggcgtgtgt taatggaaag tgaaacgtgg caggcggtgt ggaatacttt gcgcttctcg
     1081 gcggcggcgg tgtttgcggc ggcggttttg ggtgtggtgt atgcggcggc ggcgcggcgg
     1141 tcggcgtgga tgcgcgggct gatgtttttg ccgtttatgg tgtcgccggt ttgtgtttcg
     1201 gcgggcgtgc tgctgcttta tccgcagtgg acggcttcgt tgccgttgct gctggcgatg
     1261 tatgcgctgc tggcgtatcc gtttgtggca aaagatgttt tgtcggcttg ggacgcactg
     1321 ccgccggatt acggcagggc ggcggcgggt ttgggcgcaa acggctttca gacggcatgc
     1381 cgcatcacgt tccccctctt gaaaccagcg ttgcggcgtg gtctgacttt ggcggcggca
     1441 acctgcgtgg gcgaatttgc ggcaaccttg ttcctgtcgc gtcccgagtg gcagacgctg
     1501 acgactttga tttatgccta tttgggacgc gcgggtgagg ataattacgc gcgggcgatg
     1561 gtgctgacat tgctgttggc ggcgttcgcg ctgggtattt tcctgctgtt ggacggcggc
     1621 gaaggcggaa aacggacgga aacgttataa tgcgaaccct ttttcagagg acggcaaaat
     1681 gagcgagttg gataacatcc ttgcccataa tcggcagttt gtcgagtcgg gcgaatatga
     1741 aaaatacttt accgacaaat accccgaacg cgggctggca gttttgtcct gtatggatgc
     1801 gcggattatc gggctgctgc ccgacgcgtt gggtttgaaa aacggcgatg ccaagctgat
     1861 taaaaatgcc ggcgcgctgg ttacgcaccc gtggggttcg gtgatgcgga gccttttggt
     1921 tgccgtgttt gaactgaagg tcagagagat tatggtcatc gcccatcacg attgcggtat
     1981 gcaggggctg aatgccgaag aattcctcgg gcgcgtccgg gaaagccgga ttcccgaaga
     2041 ccgtatcgaa accctgcgtt atgccggtat cgacctcgac ggctggctga ccggtttcga
     2101 caacgtcgaa gacagcgtgc gccacacggt ggaccttatc cgtaaccatc cgctgatgcc
     2161 gcgccatatc gccgttcacg gattggtcat ccatcccgtt accggcaaac tgacgctggt
     2221 tgtggacggc agtgtttcag acggcatgga cttatcggaa ggaatggaaa catcatgaag
     2281 aaaatcggac tgttcggcgg cactttcgac ccgatacaca acgggcatct ccacatcgcc
     2341 cgcgcctttg ccgacgaaat cggcttggac gcggttgttt tcctgccggc aggcggcccg
     2401 tatcacaaag acgcagcctc cgcttccgcc gccgaccgcc ttgccatggt cgaactggcg
     2461 acggcagaag acgcgcgttt tgccgtcagc gattgcgaca tcgtccgaga aggtgcaacc
     2521 tatacttttg ataccgtcca aatcttccgc cagcagttcc catccgcgca actctggtgg
     2581 ctgatgggca gcgacagcct gatgaagctg cacacatgga aaaaatggca gatgctcgtg
     2641 cgcgaaacca atatcgccgt cgccatgagg cagggcgaca gcctgcacca aaccccgcgc
     2701 gaactgcacg cgtggctggg caagtccctt caggacggca gcgtccgcat cttgtccgcc
     2761 ccgatgcata atgtgtcgtc aacggaaatc cgccgcaacc ttgccagcca aggcgtttca
     2821 gacggcatcc cgcctgccgc cgcacgctac atccgcgaac acggtttgta tgaaaaataa
     2881 agtcaaatca gtaagaaacg gctataatgc cgtctgaaaa catcccgtta ggaaaataat
     2941 gaacgaacaa gaactgcaag acctgcaaaa aatggtcggg gtcgccgtca acgccctcga
     3001 agacatcaaa gccaaagaca tttccgttct cgaaacgcaa gacaaaactt cgctgtttgc
     3061 cagaatgatt atcgccagcg gcgacagtac gcgccaagtc aaagcactgg ccaacaacgt
     3121 tgccgtcgat ttgaaagaag ccggttttga aatcctcagc accgaaggcg acagcggcga
     3181 atggacgttg gttgatgcag gagacctcgt cgtccacgtt atgctccccg ccgtgcgcga
     3241 cttctatgat atcgacaccc tttggggcgg cgagaaaccg agtttccacg ccggaatgca
     3301 gaagccgtgg cacgcggcag actgattccc gatgccgtct gaatgttcag acggcatttt
     3361 cctgtaaggg agaaagcatt gaacatcacc gttttggcag tcggcaccaa aatgccgcgc
     3421 tgggttgatg aggccgtcgc cgaatacgcc aaacgcttcg gacgcgacgt cgcctacgta
     3481 ctcaaagaaa tcaaacccga aaaacgcggc gcgggcgtga atgccgccca aggaatggcg
     3541 gcggaagaaa aacgcatcct cgaagccata ccgcaaggcg cgttcctcgt cgtccttgac
     3601 gaacgcggca aagcaccgac ctccgtcgag ctggcggaac acctcaaaac ttggcagcaa
     3661 aacggcgaac acgtctgctt cgtcatcggc ggcgcggacg gcatgaccga ccgcctcaaa
     3721 cagcaggccc gcatgatgat gcgcctgtcc agcctgaccc tgccgcacgg gatggtgcgc
     3781 gtccttctga ccgaacaact ctaccgcgcc gcctccatcc tgcacaacca cccctaccat
     3841 cgggaataag aaggcttttg tccgcactcc caatcggtta aaatcccccc gttatttctg
     3901 aacacacagc aaaggaatcc gctatggcac gcatggtatt ctgcgtcaag ctcaacaaag
     3961 aagccgaagg catgaaattt ccgccgcttc ccaacgaatt gggcaagcgc atttttgaaa
     4021 acgtatcgca agaagcgtgg gcggcgtgga cgcgccacca aacgatgctg attaacgaaa
     4081 accgtttaag cctcgccgat ccgcgcgcgc gcgaatacct ggctcagcag atggagcagt
     4141 atttcttcgg cgacggcgcg gatgccgttc agggatacgt tccgcaataa cggttttccg
     4201 ttttgaacac aggctgtccg aaactgcttc agacggcctt taaaatacgc cggacaactt
     4261 tatcttcacg caaccggaca aattttgaca ttgggcaatg ttaaaatccc ccattattcc
     4321 caaccgcgct ttcaggagca gatgatatgc aacacgacgt ttacgactac accgcgcata
     4381 cggtttctaa aaacaccgtc ctgcagaaaa cctaccgcct gctcggattt tcattcattc
     4441 cggcagccgc aggcgcggca cttgccgcca atgccggttt caatttttac gccgccttcg
     4501 gttcgcgctg gatagggttt gccgtcgtgt tggcgttttt ctacggtatg atccacttca
     4561 tcgagaaaaa ccgttacagc aataccggcg ttaccctgct gatggtattc acattcggta
     4621 tgggcgtatt gatcggcccc gtgctgcaat acgcgctcca tattgccgac ggtgcgaaaa
     4681 tcgtcggcat tgccgccgcg atgaccgccg ccgtcttttt aacgatgtcc gccttggcgc
     4741 gccgaacccg gctcgatatg aacgcgctcg gacgcttcct gaccgtaggt gcggtcattc
     4801 tgatggtcgc cgtggttgcc aatctgtttt tgggtattcc cgcactcgcc ctgaccattt
     4861 ccgccggttt tgtcttgttc agttccttaa tgattatgtg gcaggtacgc accgtcatcg
     4921 acggcggcga agacagccac atcagcgcgg cactgacact gtttatctcg ctttacaaca
     4981 tcttcagcag cctgctgaac atcctgttgt ctttaaacgg cgaggattga tgccggtaaa
     5041 acgccgtccg gctatgccgt ctgaaaatgc ttcagacggc attttacttt gggcatacaa
     5101 tacggatgca cacgcaccaa cacacagccg gctatgaggc cgggaggaat caaatgttac
     5161 cgaatacacc gcgccgcgcc gtttatgccg gcagtttcga tccgcccaca ttggggcatc
     5221 tgtggatgat acggcaggcg caatctatgt ttgacgaact catcgtcgcc atcggcatta
     5281 accccgacaa acgcagcacc tataccgtcg ctgaaaggca ggatatgttg tgcgatatta
     5341 ctaaaatgtt tcccaacgtc agaaccgatg tatttgaaaa ccgatttctg gtgcattatg
     5401 cccgtgaggt agatgcagga ttcatcgtgc gcggcatccg ttctgcttcg gattacgaat
     5461 acgaacgttc catgcgccac atcaacagcg acctcgcccc cgaaatatcc accgtattcc
     5521 tcatgccgcc gcgcgaaatc gccgaagtgt cgtccactat ggtcaaagga ctggtcgggc
     5581 cggaaggctg gacggaaacg atccaccgct acgtgccgca agctgtgtac gaaaaaatcc
     5641 ttgccgaaca tcaacacgaa aattgaaccc ttctattttt gcaaggcata tatggatatg
     5701 ttggaaattt tgttccgcca tcaagacttc gtcgccatca acaaaccggg cggcatatcc
     5761 gtccaccaag acagcggcga gaccggactg gcccgaacac tcgccataca gttgggcgta
     5821 gagcgtgtgt ggctgctgca ccgattggac aaacagacca gcggcatttt actgtttgcc
     5881 ctcaacagag aaagcgcgtc cgcccttagc ggacagtttg ccggcaaaag catcaaaaaa
     5941 acctatttgg cactatccga ccgcaaaccg tccaaaaagc agggttggat taaaggcgga
     6001 atggaaaaat ccagacgcgg aatgtggaag ttgacgcgca atacagaaaa tatcgccgtt
     6061 acccgattcc acagcatcag tatcgccgaa aaactgcggc tgttcatcct ggaaccgcat
     6121 acgggcaaaa cgcaccaatt gagagtggcg atgaaaagtt tgggcagtcc gattctgggc
     6181 gacagcttat acggcggaac agaatccgaa accatgtttc tgtatgcatg gaaaatacaa
     6241 tttgcctacc aaaaccgaca aatcgaaatt gttgcaccct taaaaaacga atggcagact
     6301 gaaaatatct ctcatgcgct ggaagaattt tatatggcaa aagcaggtta ataaatataa
     6361 attaatttat aaacaatatg ataaatattt ttataaaaat ttttcaagaa aacggttgac
     6421 tgcaaatctc ttca
//
LOCUS       DAXIFD010000112         6425 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.112, whole genome shotgun sequence.
ACCESSION   DAXIFD010000112 DAXIFD010000000
VERSION     DAXIFD010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6425
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.112"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(66..425)
                     /gene="rnpB"
                     /locus_tag="ACFOCN_001528"
     ncRNA           complement(66..425)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACFOCN_001528"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(504..1607)
                     /gene="prfB"
                     /locus_tag="ACFOCN_001529"
     CDS             complement(504..1607)
                     /gene="prfB"
                     /locus_tag="ACFOCN_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HFC6970653.1"
                     /translation="MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVIGLSE
                     DPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQ
                     EDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAER
                     KGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTS
                     FASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQC
                     QNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSR
                     IKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV"
     gene            complement(1710..2603)
                     /locus_tag="ACFOCN_001530"
     CDS             complement(1710..2603)
                     /locus_tag="ACFOCN_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HFC6970654.1"
                     /translation="MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVG
                     LALGGGASKGFAHVGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEI
                     LGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVAFN
                     QGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISAR
                     PGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIQL
                     GEEAARAALPEIKRKLAAYRY"
     gene            2945..3394
                     /locus_tag="ACFOCN_001531"
     CDS             2945..3394
                     /locus_tag="ACFOCN_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6970655.1"
                     /translation="MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQ
                     FPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGY
                     NVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD"
     gene            3468..3776
                     /locus_tag="ACFOCN_001532"
     CDS             3468..3776
                     /locus_tag="ACFOCN_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970656.1"
                     /translation="MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGA
                     SKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
                     "
     gene            3892..4734
                     /locus_tag="ACFOCN_001533"
     CDS             3892..4734
                     /locus_tag="ACFOCN_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HFC6970657.1"
                     /translation="MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWAR
                     KQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGG
                     HLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAV
                     AREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDT
                     HGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEY
                     RRAA"
     gene            4724..5470
                     /locus_tag="ACFOCN_001534"
     CDS             4724..5470
                     /locus_tag="ACFOCN_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HFC6970658.1"
                     /translation="MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHS
                     FIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLLDGILA
                     LMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLI
                     WRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSG
                     WTEQRIIIPSLSAISENMEGNSPGQNHLSA"
     gene            5492..6079
                     /locus_tag="ACFOCN_001535"
     CDS             5492..6079
                     /locus_tag="ACFOCN_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HFC6970659.1"
                     /translation="MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSA
                     YSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQN
                     GHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
                     MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK"
     gene            6085..6264
                     /locus_tag="ACFOCN_001536"
     CDS             6085..6264
                     /locus_tag="ACFOCN_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HFC6970660.1"
                     /translation="MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQL
                     QTIKRSLAKTTRTSK"
BASE COUNT         1582 a         1708 c         1518 g         1617 t
ORIGIN      
        1 caacctaaat aaaaatgccg tctgaaccat atttcaggtt tcagacggca tttgcgtgtc
       61 ggatgcacac cggacaggcg gtaagccggg ttctgtctcg gacagtcatt cctctaggca
      121 taccgttacc agtatgctca agcaacctac ccgaacgctc ggcgggcagc gtcattgcgt
      181 tctgtttggt cttgctccga atggggtttg gcctgccgca tattgttacc aaatgcgcgg
      241 tgcgccctta ccgcaccttt tcacccttgc ctgtgctgcc aaagcagcca tcggcggttt
      301 tgctttctgt tccactttcc gtcgcgttac cgcgcccggc cgttaaccgg cattctaccc
      361 tgcggagccc ggactttcct ccccgtatgc cttacgcgat acgcggcgac tgtctgctcg
      421 tcccgtgtgc ggcgcggatt ataacacgaa acgcaaaaat gccgtctgaa acggtacagg
      481 tttcagacgg catacagcct aaactacacg ccctgtttca ggctggcttc gataaagccg
      541 tccaaatcgc catccaatac ggctttggtg ttgccgactt cgtagcctgt acgcaagtct
      601 ttgatacgtg aggaatccaa aacatacgaa cggatttggc taccccaacc tacatcggat
      661 ttaccttctt ccaacgcctg tttctcttca ttgcgtttgc gcatttccaa ttcatacagt
      721 ttggacttca acatttccat cgcggcggct ttgttggcgt gttgcgaacg gtcgttttga
      781 cattgcacca caatccccgt cggctcgtgg gtaatacgca cggcggagtc ggttttgttg
      841 atgtgctgac cgcccgcgcc cgatgcgcga taggtgtcga tacgcaaatc ggcggggttg
      901 atttcgattt cgatggaatc atcgatttca gggtaaacga acacggaggc aaacgaagta
      961 tggcgtttgt tgttcgagtc aaacggtgaa tagcgcacca agcggtgaac gccagtttcg
     1021 gtacgcagca aaccataggc gtattcgcct tccactcgga tagtcgcgcg gttgatgccc
     1081 gcgatttcgc cgtcgtcttc ttcgaggatt tcgattttga agcctttgcg ctcggcgtag
     1141 cggctgtaca tgcggaacag catacccgcc cagtcttccg cttccgtacc gcccgcgcct
     1201 gcggtgatgt cgataaagca gttgttcggg tcggcgggct ggttgaacat ccgtttgaac
     1261 tccaaatccg ccatctgttt ttccagcccc gccacatctt cctgcacggc ggcaaaacct
     1321 tcttcgtcgt tttcttcgac ggtcatttca atcagcatgc ggttgtcttc gatgcccgaa
     1381 gcgatgttgt cgagcgtcaa cacgatgcct tcgaggattt tgcgctcttt gccgatttct
     1441 tgggcgcgtt tcgggtcgtt ccaaagttcg gggtcttcgg aaagaccgat aacttcttcc
     1501 aatcggtctt tcttaccctg ataatccata taaactcgga tgtcttcgct gcgcttttcc
     1561 aaatcattca gggtattgtt gagctggttg attacttcgg cttccatgat tcttttgttc
     1621 tttcaaaatt ttaggggcgt attgtacggg attcgggtat ttttttctat ggataaagcc
     1681 ttctagaaac acgttcggac ggcatagcgt caataacggt atgccgccag tttgcgtttg
     1741 atttcaggca atgcggcacg tgctgcctcc tcacccaact ggatggcacg ttttttctga
     1801 tcgaatccgc cgactgcacc caaatccaaa acctgcggtt tgataaccac atccgcctgc
     1861 cccaactcat tttgcaacgc ggaaacgctc attacgttca gcgtctgatc gagataagag
     1921 aagaagcctt ggctgatgtt tttgcccgga cgggcggaaa tatcgacggc aatcacgaaa
     1981 ttcgccccct gccgccgggc ggcactgacg ggcacgggct gcgacagacc gccgtcaaca
     2041 tatgtatgcc tgccgatgat aacgggttgg aacacattgg gaatggcggc ggaagcgcgc
     2101 acagcctgcc cggcattccc ttgattgaaa gcgacggcct tgccggtttc aaaatcagta
     2161 gcaacagcgg caaatttgat gggaaactgc tgaatctgcc tgccgccgac ttttcggttg
     2221 atgtaatttt gcagcttttc gcctttgata aaaccactgg tggacaaggt taaatcgact
     2281 aaatcggttt tgcctaaaat ttcggcttcc aattcgaggc ggtcgggcga catacccgat
     2341 gcaaaaaggc tgccgacaat cgaacctgcc gatgtgccgg taaccacctt cacaggaata
     2401 ccgttttctt tcaaaacctt aataatacct acatgggcaa atcctttaga tgcgccgcca
     2461 ccgagtgcca aaccgaccac tgcggcgggt ttggcggttt gcaccggctt gcgggcggca
     2521 ttatttcccg ccgtgccgca ggcggcaagc aacgcggcgg cggcgattgc caaaagcggt
     2581 ctgatttttg aaaacgttac catattttcc attcctttat atatcgcacc ccgtcaaaaa
     2641 gagggattgc ttttcttaac aacccccttt gacagccaag caaatggagg ctttgttaag
     2701 tcatcatcaa aattaatatt tctttttttc ctttacggaa attatatttg aaggcatact
     2761 atccaaggtg ggaattatct cacaacaccg ccgttatcca aatatcccgc ctttttccct
     2821 tcctttccat caaaatactt tctttttata ttcattaact tgttaaatca ttggctgccg
     2881 ggtgtcagtt tttccgacaa aatccgtcta atggggtatc aacagaacca aaacaggaac
     2941 acttatgaaa atcggaacaa cttggcagac ggcatccgct atgctggttt tgcgtctgtt
     3001 tgccgcatat gaatttttgg aatcgggttt gcaaaaatgg aacggggaga attggttttc
     3061 tgaaatcaac gatcaattcc cattcccgtt caacttgctg ccggacgcgt taaactggaa
     3121 tctcgctatg tatgcggagc ttttactgcc cgtactgttg cttttgggtt tggcaacgcg
     3181 tctgtcggca ttagggctga tggtcgttac cgccgtcgct tgggctgcgg ttcacgccgg
     3241 ttcgggttac aatgtctgcg acaacggtta taaaatggct ttaatttata tcgtggtatt
     3301 aatcccgctg cttttccagg gtgcgggcgg atggtcgctg gatacgctgc tgaaaaaacg
     3361 gttttgcccc caatgccgtc tgaagcaaga ttgattcagt cgtggaatct gactttaaac
     3421 attccaacct tatctcgtta acttgatatt ctgaaaagga aatagaaatg aacaaaaaca
     3481 ttgctgccgc actcgccggt gctttatccc tgtctttggc cgccggtgca gttgctgcca
     3541 acaaaccggc aagcaacgca acaggcgttc ataaatccgc ccatggctct tgcggcgcgt
     3601 ccaaatctgc cgaaggttcg tgcggcgcgg ctggttctaa agcaggcgaa ggcaaatgcg
     3661 gcgagggcaa atgcggtgcg accgtaaaaa aaacccacaa acacaccaaa gcatctaaag
     3721 ccaaggccaa atctgccgaa ggcaaatgcg gcgaaggcaa atgcggttct aaataatccc
     3781 accccttcaa accaagccgc gtttttcagt aaaatgcggc ttttttaacg gcaaacaaag
     3841 attttttaac aagcacatca ttcttttgtg ccatccgaac cgggtaaaaa tatgattcaa
     3901 cacgcaggct tgggctaccg ccgcgacttg gcggaagact ttctctcgct ttccgaaaac
     3961 agcccgatat gctttatcga agccgcaccg gaaaactggc tgaaaatggg cggctgggcg
     4021 cgcaaacagt ttgaccgtgt ggcggaacgg ctgccgctgg cgttgcacgg attgtctatg
     4081 tcgctgggcg ggcaagcacc gctggatact gatttgatag acggcatcaa agaaatgatg
     4141 cgccgttacg attgcacgtt tttctccgac catttgagct actgccacga cggcggtcat
     4201 ctttacgatt tgttgccgct gccctttacc gaggaaatgg tgcatcatac ggcgcggcgt
     4261 atccgcgaag tgcaagaccg tttgggctgc cgcatcgccg tggaaaacac gtcctactat
     4321 ctgcattccc cgcttgccga gatgaacgag gtcgagttcc tcaacgccgt cgcacgtgag
     4381 gccgattgcg gcattcatct ggatgtgaac aatatctacg tcaacgccgt caatcacggc
     4441 ctgttgtcgc cggaggcttt tttgaaaaac gttgacgcag atcgcgtgtg ctatatccat
     4501 attgccggac atgacgtgga aacgccggaa ttgttgattg atacacatgg cgcggcagtt
     4561 ttgccgactg tttgggactt gctcgaactt gcctatgcca agctgccgac gattccgccc
     4621 accctgttgg aacgcgattt taatttcccg ccttttgccg aactcgaagc cgaagtcgcc
     4681 aaaatcgccg attatcaaac gcgtgccgga aaggaatacc gccgtgcagc ctgaaacctc
     4741 cgcccaatac cagcaccgtt tcgcccaagc catacgcggg ggcgaagccg cagacggtct
     4801 gccgcaagac cgactgaacg tctatatccg cctgatacgc aacaatatcc acagctttat
     4861 cgaccgctgc tataccgaaa cgcggcaata ctttgacagc gaagaatgga gccgtctgaa
     4921 agaaggtttc gtccgcgacg cgcacgccca aacgccctat tttcaagaaa tccccggcga
     4981 gttcctacaa tattgccaaa gcctgccgct tttagacggc attttggcac tgatggattt
     5041 tgaatatacc caattgctgg cagaagttgc tcaaattccg gatattcccg acattcatta
     5101 ttcaaatgac agcaaataca caccttcccc tgcggccttt atccggcaat atcgatatga
     5161 tgttaccgat gatttgcatg aagcggaaac agccttgtta atatggcgaa acgccgaaga
     5221 tgatgtgatg taccaaacat tggacggctt cgatatgatg ctgctagaaa taatgggttc
     5281 ctccgcgctt tcgtttgaca ccctcgccca aacccttgtc gaatttatgc ctgaggacga
     5341 taattggaaa aatattttgc ttgggaaatg gtcaggctgg actgaacaaa ggattatcat
     5401 cccctccttg tccgccatat ccgaaaatat ggaaggcaat tccccgggcc aaaaccatct
     5461 atccgcataa aattaccttg ttcccgatac tatgccgcta cccgacctga ccgatgccga
     5521 attaatagag tcgcgtaaac tgcttctgca ttttgcgcgg cttcagttgc ccgaccaccc
     5581 tgatttggct gaagatttag tgcaggaaac attgctgtcc gcatacagcg caggcgacag
     5641 ttttcaaggc agggcacttg tcaacagctg gctttttgcc atattgaaaa acaaaattat
     5701 tgacgcatta cgtcaaatcg gaaggcagag gaaagtcttt accacactgg atgacgagct
     5761 actggatgaa gcatttgaaa gccatttttc ccaaaacggg cattggacgc cggaagggca
     5821 gccgcaacat tggaacactc cggaaaaatc attaaacaac aacgaattcc aaaaaattct
     5881 gcaaagctgc ctatacaacc tgcctgaaaa caccgcacgg gtatttaccc tgaaggaaat
     5941 actcggtttt tcatccgacg aaatacaaca aatgtgcggt atcagcacgt ccaactacca
     6001 caccattatg caccgcgccc gagaatcatt gcgccaatgc ctgcaaatca aatggttcaa
     6061 ccaagaaaac ccgaagtaaa cgttatgaaa aaatgccgcg atatcgccct gcttctttcc
     6121 aaacatcagg accgggaaac caccccgggc gagaagattt ccatatacac acacctgctg
     6181 ttctgtccgt attgccgtga atataaaaga caacttcaaa ccatcaaaag atcactggca
     6241 aaaacaacca gaacttcaaa ataaatgccg tctgaaaagg cttcagacgg cataagctga
     6301 cggaaacaaa tcaaaccgat ttactgttat cggcagttca tccataatac acgcttcaaa
     6361 agcagcatat tcctccatac ggaatatata aatacgcaaa acacgaaggc tgcatcaatt
     6421 tgctt
//
LOCUS       DAXIFD010000113         6421 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.113, whole genome shotgun sequence.
ACCESSION   DAXIFD010000113 DAXIFD010000000
VERSION     DAXIFD010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6421
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.113"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            176..1234
                     /gene="alr"
                     /locus_tag="ACFOCN_001537"
     CDS             176..1234
                     /gene="alr"
                     /locus_tag="ACFOCN_001537"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HFC6970661.1"
                     /translation="MRPLNVQIRLGNLRHNYQILKEMHGGKLLAVVKADAYGHGAVRC
                     AFALADLADGFAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQ
                     WQLEALLIRHWKKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFS
                     CADEPESGMTEIQMEAFDLGTEGLEGEESLANSAAILNVPEARRDWGRAGLALYGISP
                     FGGSDDRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRR
                     APSNSPVAVDGKLTRVIGRVSMDMMTIELDASQEGLGHEVELWGDTVNINTVAEAAGT
                     IPYELMCNIKRAKFTYIE"
     gene            complement(1298..2653)
                     /locus_tag="ACFOCN_001538"
     CDS             complement(1298..2653)
                     /locus_tag="ACFOCN_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HFC6970662.1"
                     /translation="MSIQSGEILETVKMVADQNFDVRTITIGIDLHDCISTDIDVLNQ
                     NIYNKITTVGKDLVATAKYLSAKYGVPIVNQRISVTPIAQIAAASKADSYVSVAQTLD
                     KAAKAIGVSFIGGFSALVQKGMSPSDEVLIRSIPEAMKTTDIVCSSINVGSTRAGINM
                     DAVKLAGETIKRTAEITPEGFGCAKIVVFCNAVEDNPFMAGAFHGSGEADAVINVGVS
                     GPGVVKAALENSDATTLTEVAEVVKKTAFKITRVGELIGREASKMLNIPFGILDLSLA
                     PTPAVGDSVARILEEMGLSVCGTHGTTAALALLNDAVKKGGMMASSAVGGLSGAFIPV
                     SEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDMIAVPGDTPAHTISGIIADEAAIGMI
                     NSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKEGSCEVFVNRGGRIPAPVQSMK
                     N"
     gene            complement(2669..2941)
                     /locus_tag="ACFOCN_001539"
     CDS             complement(2669..2941)
                     /locus_tag="ACFOCN_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HFC6970663.1"
                     /translation="MNNSVITVIGKDRVGIVYDVSKILAENRINILNISQQLMDDFFT
                     MIILVDTSKCPKSRQEVLDLFAEESKKLALDIRMQNEEIFQAMHRI"
     gene            complement(3067..3804)
                     /locus_tag="ACFOCN_001540"
     CDS             complement(3067..3804)
                     /locus_tag="ACFOCN_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HFC6970664.1"
                     /translation="MKKLSRIVFSTVLLGFSAALPAQTYSVYFNQNGKLTATMSSAAY
                     IRQYSVAEGIAHAQDFYYPSMKKYSEPYIVASTQIKSFVPTLQNGMLILWHFNGQKKM
                     AGGFSKGKPDGEWVNWYPNGKKSAVMPYKNGLSEGTGYRYYRNGGKESEIQFKQNKAN
                     GVWKQWYADGNIKTEMVMVNDEPAKILTWDESGRLLSELSIRHHQRNGVVLEWYEDGS
                     KKSEAVYQDDKLVRKTQWDKDGYLIEP"
     gene            complement(4085..4984)
                     /gene="prmB"
                     /locus_tag="ACFOCN_001541"
     CDS             complement(4085..4984)
                     /gene="prmB"
                     /locus_tag="ACFOCN_001541"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6970665.1"
                     /translation="MFNQAAQELTTIRDILRFAVSRFNEAGLFFGHGTDNAHDEAAYL
                     ILHTLNLPLDMLAPYLDAKLLEAEKEEVLAVIERRAVEHIPAAYLTHQAWQGEFDFYV
                     DERVIIPRSFIYELLGNGLRPWIEYDELVHNALDLCTGSGCLAIQMAHHYPDAQIDAV
                     DVSLDALEVAGINVEDYGLEERIRLIHTDLFEGLEGTYDLIVSNPPYVDAESVELLPE
                     EYLHEPELALGSGADGLDATRQILLNAAKFLNPKGVLLVEIGHNRDVLEAAYPELPFT
                     WLETSGGDGFVFLLTREQLLGEE"
     gene            5129..5722
                     /locus_tag="ACFOCN_001542"
     CDS             5129..5722
                     /locus_tag="ACFOCN_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970666.1"
                     /translation="MADGMGNLIGWEKTGLVVGKQWITAKDDKVSDVCNANGEMGVIG
                     LYEPFSHGALTIPGHPNCRCEVVSVSGGELGEFAEKKELRKAAMQYARDNFIGKSYVN
                     ENSGHELKVTWQGVKHAASKANQAELSIMTKLDDLLRYAKYEGSYSDRKGHPNIIAAH
                     KYRAVAKVGNKSLNIGVIVREFPDDHKHYDHFILKDE"
     gene            5834..>6421
                     /locus_tag="ACFOCN_001543"
     CDS             5834..>6421
                     /locus_tag="ACFOCN_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HFC6970667.1"
                     /translation="MTKLYAEIAKMETQDDDTVKVWGYASSEEIDSDGEVIAAAAMKA
                     AIPDYMKFGAGREMHGSNAAGTAIEINVEDDGITFFGAHIIDPVVVSKVKTGVYKGFS
                     IGGSVTARDDLNKSQITGLKLTEISLVERPANPDAVSTCFKADKGAETVNNDTEHNAT
                     YFSHFPSKQKSTDGGRCPFLYRFPYFLSAGRAGFAG"
BASE COUNT         1719 a         1621 c         1502 g         1579 t
ORIGIN      
        1 atttgggaaa gcgattatat caggaaaagc aaaccgcctt cctacctgaa aactgctgct
       61 tcggcttgaa gacacaaggg tctttaatat tttaaaagcc ttgccgttgg attataattc
      121 cctaattgat ttcttaattt tgctaataaa cacttgtttg gtaaggaatg aatttatgcg
      181 tcctttgaac gtgcagatca ggttgggcaa ccttaggcac aattatcaga ttttaaagga
      241 aatgcacgga ggcaagctgt tggcggtagt gaaggccgac gcatacggac acggtgcggt
      301 cagatgtgct ttcgcgctgg cagacttggc agacggcttt gccgtggcga caatcgatga
      361 aggaatcagg ctgcgggaga gcggcattac ccatccgatt gtccttttgg aaggcgtatt
      421 tgaagcatca gagtacgaag cggtcgaaca atactcgctt tggccggcag tcggaaacca
      481 atggcagctt gaggctttgc tgatccgcca ttggaaaaaa cccgtcaaag tctggttgaa
      541 aatggattcg gggatgcacc gtaccggttt tttccctcat gattacgctt cggcatatgc
      601 ggcattgaaa cagtcggaat atgtggacag tattgtcaaa ttctcgcatt tctcctgtgc
      661 ggacgaaccc gaaagcggta tgacggaaat acagatggaa gcattcgatt tgggtacgga
      721 agggctggaa ggcgaagaaa gccttgccaa ttcggcggct attttgaatg ttcccgaagc
      781 acgcagggat tgggggcgcg cgggcttggc gttatacggc atttccccgt tcggaggcag
      841 cgatgacagg ctgaaacccg tgatgaggct ttcaacccgt atttttggcg aacgcgtttt
      901 acagccgcac tcccctatcg gttatggcgc aacattttat accagcaaat ctacgcgcgt
      961 cggtctgatt gcctgcggtt atgcggacgg ttatccgcgc cgcgccccaa gcaattcccc
     1021 cgtcgctgtc gacggcaaat tgacccgggt catcggcagg gtctctatgg atatgatgac
     1081 catcgagctg gacgcttcgc aagaaggttt gggacacgag gtcgaactgt ggggcgatac
     1141 ggtcaacatc aatactgttg ccgaagcggc cggaaccatc ccttacgaat tgatgtgcaa
     1201 tatcaaacgt gcaaaattca cttatatcga gtaatcaagt ccaaacaaaa atgccgtctg
     1261 aagcctttca gacggcattt ccccatcaaa accgcaatca gtttttcatc gattgaaccg
     1321 gtgcgggaat cctgccgccc cggttgacga acacttcgca tgagccttct tttaccggca
     1381 ttacaggcgc gtagcccaac aggccgccga actcgacgct gtcgccgacg gtttttccgg
     1441 ttaccggaat aatgcgcacg gcagtggttt tgctgttgat catgccgatg gcggcttcgt
     1501 cggcgatgat gccggaaatg gtgtgtgcgg gcgtatcgcc agggacggca atcatgtcca
     1561 gcccgaccga gcagacggcg gtcatcgctt cgagtttatc caacgtcagc acgcctgctt
     1621 cggcggcggc aatcatacct tcgtcttcgg aaacggggat aaacgcgcca ctcaaaccgc
     1681 caaccgcgct cgaagccatc atgccgccct ttttcacggc atcgttcagc aatgccaaag
     1741 ctgctgttgt gccgtgcgta ccgcagacgc tcaaacccat ttcttcaaga atgcgcgcca
     1801 ccgagtcgcc gacggcaggg gtcggtgcca gcgacaagtc gagaatacca aacgggatat
     1861 tcagcatttt tgaggcttcg cggccgatga gttcgcccac gcgggtaatt ttgaaggcgg
     1921 ttttcttcac aacttcggca acttcggtca atgtcgttgc atccgaattt tccaacgcgg
     1981 cttttacgac acctgggccg gatacgccga cattaatcac agcatccgct tcgcccgatc
     2041 cgtgaaacgc acccgccata aacggattgt cttccaccgc attgcagaac acgacgattt
     2101 tcgcgcagcc gaaaccttcg ggcgtaattt cagccgtgcg tttgatggtt tcgcctgcca
     2161 gcttgaccgc atccatattg ataccggcgc gcgtactgcc gacattgatg gagctgcaca
     2221 cgatgtcggt ggtcttcatc gcttcgggaa tggaacggat taacacctcg tctgaaggcg
     2281 acatgccttt ttgcaccaac gcggaaaagc cgccgataaa ggacacgccg atggctttgg
     2341 cagccttatc caaagtttgc gccacgctga cgtaagaatc ggctttgctc gccgccgcga
     2401 tttgggcaat cggcgtaacg gaaatgcgct gattcacaat cggcacgccg tatttggcag
     2461 acagatattt tgccgtcgcc accaagtctt tgccgaccgt ggtgattttg ttgtaaatgt
     2521 tttggtttaa cacgtcgatg tcggtgctga tgcagtcgtg caaatcaatg ccgatggtaa
     2581 tggtgcgcac gtcaaaattc tggtcggcca ccattttgac ggtttctaaa atctcgccgg
     2641 attgaatact catggctctc cctccgactt aaatacggtg catggcttgg aaaatttctt
     2701 cgttttgcat acggatatca agcgcgagtt ttttgctctc ttccgcaaac aaatccaaaa
     2761 cctcctgccg agatttgggg catttcgagg tatccaccaa gataatcatg gtaaaaaaat
     2821 cgtccatcag ctgttggctg atattaagga tgttgattcg gttttccgcc aaaattttgg
     2881 aaacatcgta cacgatgccg acgcggtctt tgccgatgac ggtgatgact gaattgttca
     2941 caggcttact ccttgcagat atccgttaaa gtccgaaatt ataccaccgt tggattttga
     3001 agaaatattg tcaacaatat atacatacaa aatgccgtct gaaactattt cagacagcat
     3061 caagattcag ggttcgatta aataaccatc cttatcccac tgggttttcc tgaccaactt
     3121 gtcatcctga taaacagcct cgctcttttt agaaccatct tcataccact ccaaaaccac
     3181 cccgttgcgt tgatggtggc ggatagacag ttccgagagt aatcggccgc tttcatccca
     3241 agtcagaatt ttggcaggct catcgttgac cataaccatt tccgttttga tattgccgtc
     3301 ggcataccat tgcttccata cgccgtttgc cttattctgt ttaaactgga tttcgctttc
     3361 cttgccgccg ttacggtaat agcggtaccc cgtaccttca ctcaaaccat ttttataagg
     3421 cataacggca gattttttac cgttcggata ccagttgacc cactccccgt ccggcttacc
     3481 cttgctgaag ccccccgcca tttttttctg accattaaaa tgccacaaaa tcaacatacc
     3541 gttttgcagg gtaggcacaa aagatttgat ttgcgttgaa gcaacgatat aaggttcgga
     3601 atatttcttc atcgacggat aataaaaatc ctgcgcgtgc gcaataccct ccgccacact
     3661 atattgcctg atataagcgg cagaagacat cgtcgccgtc agtttcccgt tctgattaaa
     3721 ataaacagaa taggtctgcg ccggcaaagc ggccgaaaaa cccaacagga cagttgaaaa
     3781 tacaatccga gataattttt tcattgcaat agcgatataa aaacaaggct gtgttttagt
     3841 aatcttttga tttcaattat ttgcaaggga aaagacaatt attttccggt taggaataaa
     3901 cctattctat tgaatatatt gaagccaagt acgcctatca acactatatt aaaacactgc
     3961 caaaaacaat taacttataa acaatatggt aaggatttct ctgccaagca tcaaacccga
     4021 gacaacgtat cgtaaaaatg ccgtctgaaa acaaatcgtc ttcagacggc atttcccctt
     4081 caactcactc ttcacccaat aactgctcgc gcgtcaagag gaaaacaaaa ccgtcgcccc
     4141 cgctggtttc caaccaagta aaaggcaact ccggatacgc tgcttccaat acatccctgt
     4201 tatgcccgat ttccaccagc aatacacctt tgggattcag aaactttgcc gcattcagaa
     4261 gaatctgcct ggtggcatcc aacccgtccg ccccgctgcc caatgccaat tccggttcgt
     4321 gcaaatactc ttcaggcaat aactcaaccg attccgcatc cacataaggc ggattggaaa
     4381 caatcaaatc ataagtgcct tccaatcctt caaacaaatc cgtatgaata agccggatgc
     4441 gttcttccaa accataatct tcgacattaa tccctgccac ttccaaagca tccaagctca
     4501 catcaaccgc atcaatttgg gcatcaggat aatgatgcgc catctgaatg gcaaggcaac
     4561 cgcttccggt gcaaagatcc aaagcattat gcaccagctc atcgtattct atccaaggac
     4621 gaagtccgtt acccaacaat tcataaataa aagaacgagg tatgattacg cgctcatcca
     4681 catagaaatc aaactctccc tgccatgcct ggtgtgtcaa ataagcggct ggaatgtgtt
     4741 cgacagcacg acgctcaata accgccagca cttcctcttt ttcagcttcc aagagttttg
     4801 catcaagata tggggcaagc atatccaaag gcaaattcaa agtatgcaga atcaaataag
     4861 ccgcttcatc atgcgcatta tctgttccat gaccaaaaaa gagccctgcc tcattaaaac
     4921 ggctgactgc aaaacgtaaa atatcgcgga tagtcgtcaa ttcttgtgct gcctgattaa
     4981 acataatatg aaccattctg cgtatagata cttttaatta taacagaaac aacaagcaaa
     5041 ccttttcata tcgccaaata accacccaat ctacccatac aactacataa atgcccgcgc
     5101 gaaaaccatc gcccgaacgg aaacgacaat ggccgacggt atgggcaatc tgattggctg
     5161 ggaaaaaacg gggcttgttg tcggtaagca gtggataacc gcaaaagacg acaaggtgtc
     5221 cgatgtctgc aatgccaacg gcgagatggg cgtaatcggg ctttacgagc ctttctcaca
     5281 cggcgcattg acgatacccg gtcatccgaa ctgccgatgc gaggttgttt ccgtatcggg
     5341 tggcgaattg ggggaatttg ccgaaaaaaa ggagcttcgt aaagcggcta tgcagtatgc
     5401 gcgggataac tttatcggca aaagctatgt caatgaaaac agcgggcatg aactgaaggt
     5461 aacttggcaa ggtgtgaaac acgctgcgtc aaaggcaaat caggcggaat tatccatcat
     5521 gacaaaactt gatgacttat tgcgctacgc aaaatatgag ggttcttatt cggataggaa
     5581 aggtcatcct aatattattg cagcacataa gtatcgtgcc gttgccaagg ttgggaataa
     5641 gtctttaaat atcggtgtga ttgtaaggga atttccagac gaccataaac attacgacca
     5701 tttcatcttg aaggatgaat aaagcccttt tgcagtgtcg ttctggagcg gatagcgtta
     5761 aggcaagtac acttccagcc ttgaaaaagg gctttaaatt cagcatgcca tttatacagg
     5821 caggagtaaa cccatgacaa agttatacgc agaaatcgcc aagatggaga cgcaggacga
     5881 cgacacggtc aaggtttggg gttacgcttc aagcgaggaa atcgattcgg acggcgaagt
     5941 catcgcggcg gcagctatga aggcggcgat tcccgattat atgaagtttg gcgcggggcg
     6001 cgagatgcac ggctcaaacg ctgcgggaac ggcaattgaa atcaacgttg aagacgacgg
     6061 cataaccttt ttcggtgctc atatcatcga ccccgttgtc gtgtcgaaag tcaaaacagg
     6121 cgtttacaaa ggcttttcca tcggcggcag cgttaccgcc cgcgatgatt tgaacaagtc
     6181 gcaaatcacg ggcttgaagc tgacggaaat cagccttgtc gagcgccctg ccaatcccga
     6241 tgcggtgtct acctgcttta aggcggacaa aggtgcggaa acggtaaaca acgatacaga
     6301 acataatgct acatatttta gccatttccc ttccaaacaa aaaagcaccg acggcggccg
     6361 atgccccttc ctttacaggt tcccctattt tttatccgcg ggcagagccg gttttgccgg
     6421 g
//
LOCUS       DAXIFD010000114         6357 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.114, whole genome shotgun sequence.
ACCESSION   DAXIFD010000114 DAXIFD010000000
VERSION     DAXIFD010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6357
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.114"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(100..1017)
                     /gene="thrB"
                     /locus_tag="ACFOCN_001544"
     CDS             complement(100..1017)
                     /gene="thrB"
                     /locus_tag="ACFOCN_001544"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HFC6970668.1"
                     /translation="MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTT
                     SGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVA
                     CLKGSDTALPTAEQCFHTGAMLAKMHLVAADFPLEMENPRYDAWWTEACARLLPVLSQ
                     DDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMY
                     DLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSR
                     LLDFHFPQAGEMTFIKDPNAFRNLLLSLD"
     gene            complement(1054..1782)
                     /gene="ubiG"
                     /locus_tag="ACFOCN_001545"
     CDS             complement(1054..1782)
                     /gene="ubiG"
                     /locus_tag="ACFOCN_001545"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061542 - 3-demethylubiquinol-n
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HFC6970669.1"
                     /translation="MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLR
                     LDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNN
                     VADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFST
                     INKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYH
                     VLSQTYALCDSTDVNYMFACRPAF"
     gene            1934..3175
                     /locus_tag="ACFOCN_001546"
     CDS             1934..3175
                     /locus_tag="ACFOCN_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015173 - aromatic amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015801 - aromatic amino acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter"
                     /protein_id="HFC6970670.1"
                     /translation="MPTKTPSLFGCAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLL
                     YTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYI
                     FVGGDLTAKGIGNALGGNVSLTVGQLVFFGILAFCVWASARLVDRFTSVLIGGMVLTF
                     IWATGGLIADAKMPVLFDTQAPAGTGYWIYAATALPVCLASFGFHGNVSSLLKYFKGD
                     APKVAKSIWMGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQT
                     GNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSVSGRTKTAALTFLPPLISC
                     LLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLF
                     GIVNIAAQVLSQMELVPVFKG"
     gene            3233..4288
                     /locus_tag="ACFOCN_001547"
     CDS             3233..4288
                     /locus_tag="ACFOCN_001547"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6970671.1"
                     /translation="MELKIDIATNNFKHGGGTERYTLDLVKGLNRQNITPAVYATKFD
                     HGIPEYAMIEPHLVDQHRTLKKLRSFLFSSRLAQTRKNSAAKLIACHHADYADLLICG
                     GTHLGYLHHMAQKPNLLDRLAIRRNRSNYATAKLIMAHSHMMRRELVGLYGVPPERIQ
                     VAPPPADTERFFPQPGETADLRAKYGFADHETVFLFPSTGHTRKGLELLADFFEHTGL
                     PVKLAVVGSPLPRPMKNVVGLGFCTDMPELYRAADFTIMASLYEPFGLVGVESVLCGT
                     RVVLSENMACTEVMNEEAGFFFSRQNPETLAQAVAQAVSLKKQGGHRLSDPMRALNYN
                     PSLSHHIDRLTDILASV"
     gene            complement(4355..6007)
                     /locus_tag="ACFOCN_001548"
     CDS             complement(4355..6007)
                     /locus_tag="ACFOCN_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HFC6970672.1"
                     /translation="MVAYVFLFLFVTAALVLIIRSHYRWTYFFASALFVFLAGGMLML
                     TAQWQRALNFASVWFVVLILFHRLKIHYYKQPLLISDFLLIADWRNWETLFHYKEAVI
                     GMAGLLALAAYAVFGWSGADSLGVPWRWAGAALFAAAFVSMWYFSKHPGAVKTWLDSL
                     PDDGRDVFLNLPMSCRAVFFQVPVFEGDGEAFAKQMPSETQPCGMSDEKPDIVVTLME
                     STLDPHCFDFAAAKIPDLKMFGRQEDTVFSSPLRVHTFGGATWKSEFAFLAGVPSTDF
                     GALASGVFYSVVPHLQTGLVRNLREHGYFCVALSPFTKGNYNAKAAYDHFGFNLMFQP
                     QDLGYPAPMGKNLWHISSEEMMQYARMILEKRHPDLENVRQPMFVYVLTMKEHGPYRT
                     DTDNVFDLDAPDLNAKTVSALNDYIGRIADLDKAVESFDRYLHERGKPFVFGYFGDHQ
                     VPFEGVSVRKKWDYAQPDYVTQFAVRSNIAGGFVQRQDFLDLAFAGGVLMEAAGLEAK
                     DGFMRANMAMRGLCGGGLEDCPNRKLVGDYRNYLYDVLKIAS"
     gene            6177..>6357
                     /locus_tag="ACFOCN_001549"
     CDS             6177..>6357
                     /locus_tag="ACFOCN_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HFC6970673.1"
                     /translation="MNYKIYDGAKIIKKENLSIGDYSQIDDFVFFNCGEKSILGSFVH
                     ISSFTSIIGGGEFYMD"
BASE COUNT         1586 a         1959 c         1456 g         1356 t
ORIGIN      
        1 ggaaaatacc cggctatcgt ctcattttcg ttttaatcag ccataaaaat gccgtctgaa
       61 accctttcag acggcatttc tgtcaaacgc cggacgcact caatccaaac tcaacagcag
      121 gttgcggaac gcgttcgggt ctttgataaa cgtcatctcg cccgcctgcg gaaaatgaaa
      181 atccaacagg cgcgacaccc aaaaacggat gcagccggcg cgttgggcgg tcggaaaata
      241 cgccttttct tcggcactca aggggcgcac gccctcataa ccgccgataa acgccttttt
      301 caacgcctca tccaacttat tgtccgccgt ccttgcccaa tcgttgaccg caatcgccaa
      361 gtcatacata aaattgcccc ggcaggcata ataaaaatcg ataaagcccg acacctgacc
      421 gccgtcaagc aacacattgt ctttaaacaa atcggcgtgg atgatgcccg aaggcagatg
      481 attgccgaga ttgtccttca gcgcatcgat ttcggaacac agcagcgcag catcgtcttg
      541 cgacaggacg ggcagcagcc gggcgcacgc ctccgtccac cacgcatcgt aacgcgggtt
      601 ttccatttcc aaagggaaat cggcggcgac aaggtgcatt ttggccaaca tcgcaccggt
      661 atggaaacac tgctccgccg tcggcagcgc agtatccgaa cctttcaggc aggcaaccaa
      721 gcaggcgggc ttgcccgcca aaacggaatc aagccggccg tctttgcgcg caaccggcgc
      781 ggcaaccgcc acgcccttca tactcaaatg ccggttaagc tccagaaaaa acggcagctc
      841 ttcctgtttc aacacttcaa acacggtcag cacataacgt cccgaagtcg tcgtcagaaa
      901 ataattgctg ttggtaatcc cctgcgcgat gccctgcagg gaaacaaatt cccccaaatc
      961 gtaaccgctc aggaagccgc gcatttcatc atcggaaaca ctggtataga cagacatatc
     1021 aactcacttg ctcaaaaacg ggcaaacccg ccgtcagaac gccggacggc aggcaaacat
     1081 ataattcaca tcggtcgaat cgcacagggc ataagtttgc gacaacacat ggtaagtcat
     1141 acccttcgta tccgccacat ccaagcctgc ctgacggcac attcgcgcca gctcggcagg
     1201 tgcgatgaat tttttccagt cgtgcgtgcc tttggggaca aacttcaaca gatattccgc
     1261 cgccacaatc agatgcaggt acgatttcgg gtttttattg atggtagaaa aaaacaccat
     1321 gccgtccggt ttgaccagat tggcacaagc acgcacgatg gcggcgggat cggggacgtg
     1381 ttccatcatt tccatgcacg ttaccacatc gaacgagtgc ggttccgcct cggcaaggtc
     1441 ttccacgcgg atacattcgt attcgatatc ggcgacattg ttcaaagccg cgtgcaggcg
     1501 ggcggtttcc agcgactgct ccgccatgtc gatacccttt acaaacgccg cgccgcgccg
     1561 cgccatgctt tccgccagga tgccgccgcc gcagcccaca tccaaaaccc gtttgccgca
     1621 caaatccgcg tgtccgtcga tataatccag ccgcagcgga ttgatgtcgt gcaaggtttt
     1681 gaactcgccc gacttgtccc accatttgtc ggcaatccgg ctgaatttgg cgatttcccc
     1741 ctcatcgaca ttatattttt tgtcggacat tttccctccc atctgacgaa ccgcccactc
     1801 caaaacccaa gattatacta tggaacgcaa tgccgtctga aagccttttc gggcggcgcg
     1861 gcgcaaatac cttacaaatc cttacacttt acggcataat ggcggctcgc tttttctggc
     1921 agaaagacaa aatatgccca ccaaaacccc ttcactgttc ggctgcgcga tgattatcgc
     1981 cggcacggtc atcggcgcag gtatgctcgc caacccgacc gccacatccg gcgtatggtt
     2041 taccggctcg ctggccgtgt tgctgtacac ctggttttcc atgctctcca gcggcctgat
     2101 gattttggaa gtcaacaccc actaccccca cggcgcgagc ttcgacacca tggttaaaga
     2161 cctgctcgga cgcggctgga acatcatcaa cggtatcgcc gtcgccttcg ttttatacct
     2221 gcttacttac gcttatatct tcgtcggcgg cgacctgacc gccaaaggca tcggcaacgc
     2281 cttgggcggc aatgtttcgc ttaccgtcgg acaactcgtc ttcttcggca tcctcgcctt
     2341 ttgcgtatgg gcatccgcac gcttggtcga ccgattcacc agcgtcctca tcggcggcat
     2401 ggtattaacc tttatttggg caaccggcgg cctgattgcc gatgccaaaa tgcctgtttt
     2461 gtttgacacc caagcccctg ccggcaccgg ctactggatt tacgccgcca ccgccctgcc
     2521 cgtctgcctc gcttccttcg gcttccacgg caacgtttcc agcctgctca aatactttaa
     2581 aggcgacgcg cccaaagtgg ctaaatccat ctggatgggc acactgattg cgctggtaat
     2641 ttacgtcctc tggcaaaccg ccatccaagg caacctgccg cgcaacgagt tcgcccccgt
     2701 gattgccgcc gaagggcaag tctccgtcct catcgaaacc ctgtccaaat tcgcccaaac
     2761 cggcaatatg gacaaaatat tgtccctgtt ttcctatatg gcgatcgcca cctcgttttt
     2821 aggcgtaacg ctcggactct tcgactacat cgcagacatc ttcaaatgga acgacagcgt
     2881 gtccggccgc accaaaaccg ccgcgctgac cttcctgccg cccctgattt cctgcctgct
     2941 cttccccacc ggcttcgtta ccgccatcgg ctacgtcggc ctggcggcaa ccgtctggac
     3001 aggcatcatc cccgccatgc tgctctaccg ttcgcgcaaa aaattcggcg caggcaaaac
     3061 ctataaagtt tacggcggct tgtggctgat ggtttgggtc ttccttttcg gcatcgtcaa
     3121 catcgccgca caggtattga gccaaatgga actcgtcccc gtatttaaag gataaaggca
     3181 aaatgccgtc tgaagccctg ttcagacagc cttacgacat tcggaaaatc atatggaact
     3241 caaaatagac attgcaacca acaacttcaa acacggcggc ggcacggaac gctacacatt
     3301 ggatttggta aagggtctga acagacaaaa catcacaccg gccgtttatg cgacgaaatt
     3361 tgatcacggc attcctgaat acgccatgat cgaaccccat cttgtcgatc aacaccggac
     3421 gctgaaaaaa ctacgctcat tcctcttttc aagtcggctc gctcaaacca gaaaaaacag
     3481 tgccgccaaa ctgattgcct gccaccacgc cgattacgcc gacctcctca tctgcggcgg
     3541 cacacacttg ggctacctgc accatatggc gcaaaaaccg aacctgctcg accgtctcgc
     3601 catacgccgc aaccgcagca actacgccac cgccaaactg attatggcgc attcccatat
     3661 gatgcggcgc gaactggtcg gactgtacgg cgttccccct gaaagaatcc aagtcgcccc
     3721 cccccccgca gatacggaac gcttctttcc acaacccgga gaaactgccg acctgcgcgc
     3781 caaatacggc tttgccgacc atgaaaccgt tttcctgttc ccatcgaccg gccacacgcg
     3841 caaaggtctg gaactgcttg ccgacttttt cgaacatacc ggcctgcccg tcaagcttgc
     3901 cgttgtcggc tccccgctcc cccgccctat gaaaaacgtc gtcggactgg gcttctgcac
     3961 cgatatgccc gaactctacc gcgccgccga ctttaccatt atggcctccc tgtatgaacc
     4021 cttcgggctg gtcggtgtcg aatccgtcct atgcggcaca cgcgtcgtcc tctccgaaaa
     4081 catggcatgt acagaggtca tgaacgaaga agccggattc tttttctcac gccaaaaccc
     4141 ggaaaccctg gcgcaagccg ttgcccaagc cgtcagcctt aaaaaacagg gcggacaccg
     4201 cctgtccgac ccgatgcgtg cactgaacta caacccgtcc ctgtcgcacc acatcgaccg
     4261 actgaccgac atactggcat ccgtataaca aaatgccgtc tgaacgagtt ttcagacggc
     4321 atttttgcaa ccgttgcagc cgtgcggcaa aaagctaact ggcaattttc aaaacgtcgt
     4381 acagatagtt ccgatagtct ccgaccagtt tccggttcgg gcagtcttcc aaccctccgc
     4441 cgcacaaacc gcgcatcgcc atattcgcac gcatgaagcc gtctttggct tccagaccag
     4501 ccgcctccat cagcacgccg cctgcaaagg caaggtcgag gaaatcctgc cgctgtacga
     4561 atccgccggc aatattgctc ctgacggcaa actgcgttac ataatccggc tgcgcgtaat
     4621 cccatttctt cctgacggac acgccctcaa acggtacctg atgatcgccg aaataaccga
     4681 aaacaaaggg tttgccgcgt tcgtgcagat aacggtcgaa actttccacc gctttgtcca
     4741 aatcggcaat gcgcccgatg tagtcgttaa gcgcggatac ggttttcgca ttcaaatcag
     4801 gtgcatccaa atcaaacaca ttgtcggtat ccgtccgata cggcccgtgc tccttcatgg
     4861 tcagcacata tacgaacatc ggctgccgca cgttttccaa atcgggatgg cgtttttcca
     4921 aaatcatccg cgcatactgc atcatttcct cactggaaat atgccacagg tttttgccca
     4981 tcggcgcggg atagcccaaa tcttgcggct ggaacatcag attaaagccg aaatggtcat
     5041 atgctgcctt ggcattgtag ttgcccttgg taaacggcga gagtgccacg caaaaataac
     5101 cgtgttcgcg caggttgcgg accaaaccgg tctgcaaatg cggcacgacc gagtaaaaca
     5161 cgccacttgc caacgcgccg aaatccgtgg acggaacacc cgccaaaaac gcaaattcgg
     5221 acttccacgt tgcgccgccg aaagtatgca cgcgcaaagg tgaggaaaat acggtatctt
     5281 cctgccgccc gaacattttc aaatcgggaa tcttggcggc agcaaagtcg aaacagtgcg
     5341 gatcgagcgt cgattccatc agggtaacga caatatcggg tttttcatcc gacatgccgc
     5401 acggctgggt ttcagacggc atctgtttag caaacgcttc cccgtcgccc tcgaacacgg
     5461 gtacttggaa aaacaccgcc cgacaggaca tcggcaggtt caaaaacacg tcgcgcccgt
     5521 cgtccggcag cgagtccagc cacgtcttta ccgcgcccgg atgtttggaa aaataccaca
     5581 tcgacacgaa cgccgccgca aacaacgccg cgcccgccca ccgccacggc acacccaaag
     5641 aatccgcacc gctccagccg aaaaccgcat atgccgccaa agccagcagc cccgccatac
     5701 cgataaccgc ttccttataa tgaaacagcg tttcccaatt ccgccagtcg gcaatcagca
     5761 aaaagtcgga aatcaacagc ggctgtttgt aataatggat tttcagcctg tggaacagta
     5821 tcagcaccac aaaccagacc gaagcgaaat tcaaggcgcg ctgccactga gccgtcaaca
     5881 tcagcatacc gcccgccaaa aagacaaaca gcgcggatgc gaaaaaatac gtccagcggt
     5941 agtgcgacct gataatcagc accaacgccg ccgttacaaa caaaaatagg aaaacatagg
     6001 caaccatccc gtcccactcc tcaaaacggc atacctgagc cgttgcgaat tattatcgaa
     6061 agtgtgcatt ataatgcagc acaggcgcat cactgccgat atttcagtat aattattcga
     6121 gatggaatca ctgaaaatgg tgaagttaca atgagccctt ttagaggaac taaaaagtga
     6181 attataaaat atacgatggt gcaaagatta ttaaaaaaga aaatttatca attggggatt
     6241 attctcaaat tgatgatttt gtatttttta attgtggaga gaaaagtatt ttaggaagtt
     6301 ttgttcatat atcatcattt accagtatta ttggtggggg agaattttat atggatc
//
LOCUS       DAXIFD010000115         6254 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.115, whole genome shotgun sequence.
ACCESSION   DAXIFD010000115 DAXIFD010000000
VERSION     DAXIFD010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.115"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(245..3004)
                     /locus_tag="ACFOCN_001550"
     CDS             complement(245..3004)
                     /locus_tag="ACFOCN_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HFC6970674.1"
                     /translation="MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKG
                     IITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQV
                     EKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPN
                     GMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRD
                     YFRPDIGEILVDNQEVHDQVAEFMSYVMPGNVGRLKLYQDHTPLFSRFQIEHQIESAF
                     SRSVSLPSGGAIVIDHTEALVSIDVNSARATRGSDIEDTAFKTNMEAAEEVARQMRLR
                     DLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPA
                     LGESSHVACPRCAGTGVIRGIESTALHVLRMVQEEAMKDNTGEVHAQVPVDVATFLLN
                     EKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRIDDVEEDGEPSYKRVAEPEEDE
                     SAKPFGSEKAKASRPEPAVKGVRHTQPAPTVAPEKKASWWDSFKAWLKRIFGGSETQA
                     APAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAET
                     RNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSE
                     RGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNN
                     QRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVA
                     ERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAE
                     QARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQV
                     ETRQG"
     gene            3497..4489
                     /locus_tag="ACFOCN_001551"
     CDS             3497..4489
                     /locus_tag="ACFOCN_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6970675.1"
                     /translation="MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRI
                     IRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFDVVYEDDA
                     LLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSA
                     LVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVKLPLFKYTGAQGEKMVRVSADGQSAH
                     TVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQ
                     ANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPLDLAQFAVMLENGTKM"
     gene            4555..5709
                     /gene="lpxB"
                     /locus_tag="ACFOCN_001552"
     CDS             4555..5709
                     /gene="lpxB"
                     /locus_tag="ACFOCN_001552"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HFC6970676.1"
                     /translation="MVDKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARFVGIGGE
                     LMKAEGFESLYDQERLAVRGFAEVVRRLPEILRIRRGLVRDLLSLKPDVFVGIDAPDF
                     NLGVAERLKRSGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLYLDAGGR
                     AEFVGHPMAQLMPLEDDRETARKTLGVDAGIPVFALLPGSRVSEIDYMAPVFFQTALL
                     LLERYPAARFLLPAATEATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAADAVLVTS
                     GTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPELLQSEAK
                     PEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC"
     gene            5717..5875
                     /locus_tag="ACFOCN_001553"
     CDS             5717..5875
                     /locus_tag="ACFOCN_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970677.1"
                     /translation="MDYFPEAARITKKGGEIVINGTSNNKYLRGIPNETELARMGLRL
                     KYNGQLTD"
     gene            complement(5919..>6254)
                     /locus_tag="ACFOCN_001554"
     CDS             complement(5919..>6254)
                     /locus_tag="ACFOCN_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6970678.1"
                     /translation="IFGVYKNYLNMDIKDPNLKIRFFDFLEELLSDGVIELCDYRENP
                     PKILTGSPKTQVDELRRIWPDMEEMLLYFPDNPWFYVEHFWWGATCPIELTQLPKIEI
                     YEEQMKQGK"
BASE COUNT         1241 a         1523 c         1907 g         1583 t
ORIGIN      
        1 acctttgggc ggcggcaata ttcaaaaatt atctgaaagt ttagaggttc tagattcccg
       61 ttttcacggg aatgacggaa tgttgcggga atcatgggaa tgacggaatg ttgcgggaat
      121 catgggaatg gaggaatgtt tcggtaatca cgggaatggc gaagtttcag acggcattgc
      181 aggtatccga acccatgtaa aaaagaggtt ctgcggaaca gaacctcttt ttgccgccgt
      241 cggttcagcc ttgccgggtt tcgacttgga tcatttcttc ggcagggacg gttgcgactt
      301 cagacggctt gggctgttcg gaacggcgca aaccgcgtcc ggcttggact tcgggttgtg
      361 ccgcccatgc cttcaatgcg gcagggtcgg tttcgatcag gacgagtccg ccggtttgtg
      421 cggtttcccg tgcctgttcc gccgcagccg taaaggttgc ggtttcagac ggcatttcct
      481 gtgcttcggc tttcggtgtc gcgccttcgg gcaggatggc ggcggtggca cggcggattt
      541 tttccgccgc atcataaacc ggtgcgtcgc cgtttgaaac ggcgggagat gctgtcggaa
      601 gatccctttc tgcaaccgga tcggcaatgc tgacggtaat cggcgcgttt gcgtcggttt
      661 cgccgaaaac gtgcgcggcg gcggaacgga ctttgtcggc ggtgtcgtga atattcaggt
      721 actgctcgat tttggcggca gacggaatat tgcgtttttt gccgttttga cggcggtcgc
      781 gctgattgtt gcgctcgcgg cgttctttgg catctcggct gtcgcgttcg cggcggttgc
      841 gttcggattt gggcttgctg cctttgtctt ctgcggtatg cggttcggac ggcgtgtttt
      901 ccgctgtctg aacggttgtt tcggcaacgg tggcggtttc cggcgcggtt tggccgcgtt
      961 cgctgcggct gccgttgcgg cggcgttttc cggtttgcac ttcggtttcg gacggtgcgg
     1021 catctgcaac ggttgcggca ggctgtatgt tgcggtcttg gatttccgct tcgtcggcgc
     1081 gtccggcggc acggtcgccg cgttcgttgc ggcggcggtt gccgttgttg cgcgtttcgg
     1141 ctttgtcggc gcgcgcttcc tgtccggcag ttttgcctgc cacttcgcgg acttctactt
     1201 tgctgccttc gcgtttgctg cggcgcgggt tttggcggcg gttgttggcg cggctgccgc
     1261 tgcggtttgc cgtgctgcgt ttttcggagg tttcggcagc gggcgcggct tgggtttcgc
     1321 tgccgccgaa aatgcgtttc aaccaagctt tgaagctgtc ccaccaagag gcttttttct
     1381 caggggcgac agtcggtgca ggctgggtat ggcgtacgcc tttgacagct ggctcaggac
     1441 gggaagcttt ggctttttcg ctgccgaaag gtttggcgga ttcgtcttct tccggctcgg
     1501 caacgcgttt gtagctcggt tcgccgtctt cttctacgtc atcaatgcgg atgcggttga
     1561 tttcgtagtg cggattttcc aagtggatgt ttggaatcag gacgacgttg acatccaaac
     1621 gctcttccat cgcaaacagc tcggcgcgtt tttcgttcag caggaaggtg gcgacatcga
     1681 cgggcacttg tgcatgcact tcgccggtgt tgtccttcat cgcttcttcc tgaaccatac
     1741 gcaaaacgtg cagggcggtg gattcgatgc cgcggatgac gcctgtgccg gcgcagcgcg
     1801 gacaggcgac gtggctgctt tcgcccaaag ccggtttcag acgttggcgg ctcaattcca
     1861 aaaggccgaa acgcgaaagt ttgcccattt gcacgcgggc gcggtctttt ttgagcgcat
     1921 cgcgcaggac gttttcaaca tcgcgctgat gtttcggatt ttccatgtcg atgaagtcga
     1981 tgacgaccaa accacccaag tcgcgcaggc gcatttgacg ggcaacctct tcggcggctt
     2041 ccatattggt tttgaacgcg gtgtcttcaa tgtcagagcc gcgtgtggcg cgggcagagt
     2101 tgacgtcgat ggaaaccagg gcttcggtgt ggtcgatcac aatcgcgccg ccggaaggca
     2161 gactgacgct gcgtgagaac gcgctttcaa tttggtgttc gatttggaaa cgggagaaca
     2221 gcggcgtgtg gtcttgatag agtttcagac ggcctacatt gcccggcatg acgtagctca
     2281 tgaactcggc aacttggtcg tgaacttctt gattgtccac caaaatctca ccgatatcgg
     2341 gacggaaata gtctcgaatc gcacggatca gcagtgagct ttccataaag agcaggtaag
     2401 ggtcatggtg tgctttgcct gcttcttcaa tggcttgcca gagttgtttg aggtagttca
     2461 agtcccattc caactcttcc gcactgcggc cgatgccggc agtacgggca atgatgctca
     2521 tgccgtttgg aatgtcgagt tcggccatgg cggctttcaa ctcttgacgc tcttcgcctt
     2581 cgatacggcg ggatacgccg ccgccgcgcg ggttgttcgg catcaatacc aaatagcggc
     2641 cggccaggct gatgaaagtg gtcagcgccg cgcctttgtt gccgcgttcg tctttttcga
     2701 cttggacaat gacttccatg ccctctttga gcacgtcctg aatacgcgcc ctgccgcctt
     2761 cgtagtcgcg gaaatatgaa cgcgatactt ccttaaacgg caaaaagccg tggcggtcgg
     2821 ttccgtaatc gacgaaacat gcttccagcg acggctcgat gcgggtaatg atacctttgt
     2881 agatattgcc tttacgctgt tctttgccca gcgtttcgat gtccaagtcc aaaaggtttt
     2941 ggccatcgac gatggcaacg cgcagctctt cggcctgcgt tgcgttgaat aacattcttt
     3001 tcatgatcac ctcgtggacg ggcggcattc gggcgcgccg gtccggttcg gcattccgta
     3061 aggctgggtt ttccgatgtc ttcggataaa accggtaatc agtttttgag ttgaaaatcc
     3121 gcagggatgc acgttccgga gaaccgtgtg cggaagggtc ggatacagaa ggctataaag
     3181 atcgatgcgg cggtctgtct gccgcgttcc gagcggtatg gtcggaaaaa tgggtgccgg
     3241 cttcttcttg ttatcgtgat gcctgtgttt tcgggcggtt tgcgtttggg gcttgggccc
     3301 ggctgccgtc ttacttccgc gccgaaacgg caaaatcaat tcaaacttga ctacgttctg
     3361 cgcctgccgg ctgggaacag gcgcagggaa aatgctttgc ggagtgcgtt tttaatataa
     3421 aattccgttt taaagtaaac cgtttcagga ggcgcggcgg gcgcgctttt tgctgaaacg
     3481 gatgttcgga ttatagatga aaacgcacga aataagcaaa gattcggtca gcttgatagg
     3541 ggtcgccgaa catgaggcgg ggcaacgcct tgataactat ctgataaaaa tcctcaaggg
     3601 cgtgcccaag agccatatcc accgcattat ccgcgccggc gaggtgcggt tgaacaagaa
     3661 acgctgcaaa cccgacagcc gtattgcgga gggggatacg gtgcggattc cgcctgtgcg
     3721 cgtggcggag aaggaaatgc cgtctgaaag gcgtgccgcc gtaccggcgc gtgcgtttga
     3781 cgttgtttac gaagacgatg cgcttttggt catcgacaaa ccgtccggcg ttgccgtcca
     3841 cggcggcagc ggcgtgagtt tcggcgttat cgaacagttg cgccgcgccc gtccggaggc
     3901 gaagtatttg gagttggttc atcgtttgga caaggatacg agcggcttgt tgatggtggc
     3961 gaagaaacgc agcgcgctcg tcaaacttca cgaagccatc cgtaacgacc accccaaaaa
     4021 aatctacctt gcgctggggg tgggcaaact gccggacgac aatttccatg tcaaactgcc
     4081 cctgttcaaa tataccggcg cacaaggcga aaagatggtg cgcgtcagtg cggacgggca
     4141 gtcggcgcat acggtgttcc gtgtgttaag ccgtttttca gacggcattt tgcacggtgt
     4201 cgggctgtcg cacctgactt tggtgcgggc gacgttgaaa acggggcgca cgcaccaaat
     4261 ccgcgtccac ctgcaatctc aaggctgtcc gattgcgggc gacgaacgct acggcgatta
     4321 tcaggcgaac cgtcgtttgc agaagttggg tttgaagcgg atgtttttgc acgcgtccga
     4381 gctgcacttg aaccatccgc tcacgggcga gccgctggtg ttgaaggcgg agctgccgct
     4441 ggatttggca cagtttgcgg tgatgttgga aaacgggacg aaaatgtgaa ccccgatgcc
     4501 gtctgaagcc ttcagacggc atcgggacgt gaaagtatgt gaagaagaac gaatatggtt
     4561 gataaaaaaa gccctttgat tgctgtcagt gtcggcgaag cgtcgggcga cctgttgggg
     4621 gcgcacctga tacgcgccat ccgcaagcgt tgcccgcagg cgcgttttgt cggtatcggc
     4681 ggcgaactga tgaaggcgga aggtttcgag agcctttatg atcaggagcg actggcggtg
     4741 cgcggctttg ccgaagtggt caggcggctg ccggaaattt tacggatacg cagggggctg
     4801 gtacgggatt tgctgtcgtt gaaacctgat gtctttgtcg gcatcgatgc gcccgatttt
     4861 aatctgggtg tggcggagcg gctcaaacgg tcggggattc cgaccgtgca ttatgtcagt
     4921 ccgtcggttt gggcgtggcg gcgggaacgc gtgggcaaaa tcgtgcatca ggtcaaccgc
     4981 gtgctgtgcc tgttcccgat ggagccgcag ctttatcttg atgcgggcgg acgtgcggag
     5041 tttgtcggtc atccgatggc gcagcttatg cccttggaag acgaccgtga aacggcgcgg
     5101 aaaactttgg gcgtggatgc cggcatcccc gtattcgccc tgctgcccgg cagccgcgtc
     5161 agcgaaatcg actatatggc gccggtgttt tttcagacgg cattattgtt gttggaacgc
     5221 tatcccgccg cacgcttcct gctgcctgcc gcaacggagg cgacgaagcg gcgtttggcg
     5281 gaagttttgc agcggccgga gtttgccgga ttgccgctga cggtaatcga cagacagtct
     5341 gaaacagtgt gcagggcggc ggatgcggtg ctggtaacga gcggtacggc aactttggag
     5401 gtggcgttgt gtaagcgtcc gatggtcatc agctacaaga tttcgccgct gacctatgct
     5461 tatgtgaaac gcaaaatcaa agtgccgcat gtcggcctgc cgaatatcct gttgggtaag
     5521 gaggctgtgc cggaattatt gcaatctgaa gcaaaaccgg aaaaactggc ggcggcgttg
     5581 gcggactggt acgaacaccc cgataaggtt gccgcgctgc aacaggattt cagggcgttg
     5641 cacctgctgt tgaaaaaaga tacggcggat ttggccgcgc gcgcggtttt ggaagaggcg
     5701 ggatgttgag cggttaatgg attattttcc cgaagcagca cgtattacaa aaaaaggggg
     5761 agaaattgtg attaatggca catcaaacaa taagtattta agaggaattc caaatgaaac
     5821 agaactggcc cgaatgggat taaggttaaa atataatggt cagttaactg attaattttg
     5881 ttatatatga tttatgatta tagcttatac taatacgctt acttaccttg tttcatttgt
     5941 tcttcgtaaa tttctatttt aggcaattgt gtcagttcaa tagggcaagt tgctccccac
     6001 caaaaatgtt ctacataaaa ccaaggatta tctggaaaat atagcaacat ctcttccata
     6061 tccggccaaa ttcttcttaa ttcatctacc tgtgtttttg gcgaaccagt taatattttt
     6121 ggaggatttt cacgataatc gcataattca ataacaccat ctgataaaag ttcttccaaa
     6181 aaatcaaaaa atctaatttt taaatttgga tctttgatat ccatatttaa ataattttta
     6241 taaacaccaa aaat
//
LOCUS       DAXIFD010000116         6208 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.116, whole genome shotgun sequence.
ACCESSION   DAXIFD010000116 DAXIFD010000000
VERSION     DAXIFD010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6208
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.116"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..158
                     /locus_tag="ACFOCN_001555"
                     /pseudo
     CDS             1..158
                     /locus_tag="ACFOCN_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1124..1360
                     /locus_tag="ACFOCN_001556"
     CDS             1124..1360
                     /locus_tag="ACFOCN_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin transporter"
                     /protein_id="HFC6970679.1"
                     /translation="MKELHTSELVEVSGGKFHISAQGGGNLGKKDMVAVGKIGASYSP
                     NNSGVEFSVSKQFGYVQGFGVQFSKPTFGFSKKW"
     gene            2401..2538
                     /locus_tag="ACFOCN_001557"
     CDS             2401..2538
                     /locus_tag="ACFOCN_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970680.1"
                     /translation="MNTETIYATVFCILAATISGLLVKFNVIKIETSINSKFMLLGIS
                     I"
     gene            2583..3848
                     /locus_tag="ACFOCN_001558"
     CDS             2583..3848
                     /locus_tag="ACFOCN_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HFC6970681.1"
                     /translation="MSHLFRKEVFVAQQNKWTGQVILTRPFSFLFLTFCAFLIALCII
                     IFLIFGSYTNKTTVEGQLLPTMGVVRVYSSDIGTITHKFVEDGNFVKAGEPLFKLSTS
                     RFGEKGNVQAKLAAEANLKKTLALQELERLKRIHQNEQKNVHNNIHRLNNQLENIKQQ
                     ITGQNRQIRLAEKTLNKNKFLASQGAVSQQDKMTAESHLLEQRSRLESLKREQNNAIR
                     ELDEQKITLSSLPERHKTELSQLNRAITEMNQEILDFDLKSEQTIRASKSGYISTINV
                     DIGQQVEPSKLLLSIVPEQTELVANLYIPSKAVGFIKPKDKVVLRYQAYPYQKFGHAT
                     GEIISVARTALGKQELSGLGIIFTNPTLLNEPAYLVKVKLEKQTIKAYGENKPLQIGM
                     ILEADILHERKKLYEWVLDPLYSISGKIN"
     gene            3851..5938
                     /locus_tag="ACFOCN_001559"
     CDS             3851..5938
                     /locus_tag="ACFOCN_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003700725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HFC6970682.1"
                     /translation="MDYLSRLSFGFNKKLPVILQTEVAECGLACLTSILSYYGFHTDL
                     RTLRQKYTLSLKGANLADIMRFGNEMNLTPRALRLELDELSNLQLPCILHWNLNHFVV
                     LCSISKDSIVIMDPAVGMRKIKMDEVSQKFTGIALELFPNTHFEEKKETKKIKILSLL
                     RGISGLKRSLIQMLILAISLEVFALVSPFFMQWVIDHVIVTADKNLLLTLTLGFGLLA
                     ILQQLISLLQAWVGMHLSITLNLQWKANIFKRLLDLPNDYFSKRHLGDVISRFGSIDH
                     IQETLTSTFFVLVLNSLMAIFTFVLMTIYSTQLSLIVLLTLVLYILIRWLAYYPLRNA
                     TEENIVHEAKQNSYFMETIRGIQSVKLFDKHYQRHGTWMSLFVNTVNTKLTTDKLSAL
                     FEFSNKLLFSMENIIIIYLGASAILDGSFTVGVLMAFLAYKGQFESRTASLVDQYIQI
                     KMLGLHAERLADITLNETETEIIKYNHIPKLDNEQLVLKVENVSFRYADNEPYLFENI
                     NLEFKDNEAVVLTGQSGRGKSTLLNILTGSLKPETGTVSINGHDIYQVSPSFIRGLSG
                     IVRQDDVLFAGSIGENISFFDESPNMELIEQCAKMAQIHDDILKMPMGYETLIGDMGN
                     ILSGGQKQRVILARALYKRPKILFLDEASSHLDVENEQKINHNLKSLGIMKIMVAHRQ
                     ETIQSADKILNLG"
BASE COUNT         2046 a         1070 c         1123 g         1969 t
ORIGIN      
        1 aaatgtttga cggcgaagta gaagcagatg aaagttattt tggcggacaa cgcaaaggca
       61 aacgcggtcg cggtgctgcc ggtaaagtcg ccgtattcgg tcttttgaag cgaaatggta
      121 aggtttatac ggttacagta ccgaatactc aaaccgctta aaattccatg tttgtgtact
      181 gaaatgcttc aaaacaccaa accaagtttc gttttctaaa atacgaaacc attactgctg
      241 cctaaatttt tttggattgc taaattatgg cagtatgatt ttggatttta aattgaaagg
      301 caagaaaaat gtcaaaaaat gatgtagtta aagtaattgg tatattcccc ctattgtccg
      361 aacaatagag cagacttccc ggcaggtcaa attgttttaa aacacggcga acacaaaaag
      421 gttaatcacg gctttggtgt gattcacatt ttggcagaac acaaagcaga tttaacgcgg
      481 tttggattaa gccacgatga aacaggtgta acccttttat gtggaaatga tttttcaatc
      541 aggcgcaaaa atttttagtg aatttagtga tgtaaggggc aatcatcgtc ctatgattgt
      601 ctattctcgg attgggacag tcgttttaga acgcaaagaa gttgaggggg aaagtgtgta
      661 ttcagttgtt accgcgtttg ggcgaacaag ccctcgtggt acacaaattg gtacaatgcc
      721 ataaaaagac aaaagcaccc aataatttca ggtgctttgt gtagtagccg cagcctctcc
      781 ttagcttgat agggtcggat accaatctga cgattgagct actgaaattg gttagcgaca
      841 accaacctgc ccacatcaga acgcccgttc gctggtttgt acgtcctgaa aaagctcttg
      901 cattaagtta atcataatgg gaaatttaaa ttttttcaat gcttacttaa acaaaagccc
      961 cactccacca ttaggagttt ctttttcagt atacaagtaa atatttttaa aatattgatt
     1021 taatttaaaa taaaatactt gcaaaaaaaa agtattaaat taaacttgag aaaggttaat
     1081 tctgatttac atttccaacc atacttcttt acaggagaaa atcatgaaag agttacacac
     1141 ctctgaatta gttgaagtgt caggtggcaa attccatatc tctgcacagg gtggcggcaa
     1201 cctaggtaaa aaagatatgg ttgctgttgg taaaattggt gcttcctatt cccctaacaa
     1261 tagtggagta gagttttctg ttagcaagca atttggatat gtacaaggtt ttggtgtaca
     1321 gttttcgaaa cctacttttg gttttagtaa aaaatggtaa gattttttgt tttatccttt
     1381 ctgacattaa taaatctatg ctcattaagc gcatgcaata gccactttac aggaaatatc
     1441 aatccattag gtactcacaa taaagttgct aatcccagtt gtgccaatag tgccaatagt
     1501 catatcagac aacccagtag taaaaactat gatccaactg aatatagtgc ttggttacag
     1561 catatgcatg attgcaaata atgagtaacg atgaaaattt acttttttct caaccacact
     1621 taacaaaggt gaatattatg caagttttga ctttgaatga aatttaacaa gtttctggtg
     1681 ctgcttgtaa ctggcgtgat ttctcaaaaa ataccattgg tagtgcatta ggtggagcag
     1741 ctggtggggc aattgttggt tcatttgcag gtggtattgg tgctattcca ggtgcgaaat
     1801 tcggagctat tggtggtgca atcactggtg ctgtacaata tggaagcact tgttggtggt
     1861 aatattcctt aataaaacta gggtattttg atattttcta ttcaaaatac cctagttttt
     1921 cataagaact taaatacaaa aaggaacaaa taatgaaaaa atatagtgat tattttaaat
     1981 atttaatctt ttttttgatt ttactcccaa caaattatct cgtatctcat tatgtggtac
     2041 aaacctcaat gagtatgtta agcattttaa gttcttctat aataacaact tgcctttttt
     2101 ttgtttttac aaatttatcc caatcaaaga aacataaata agtacacatg tctaacaatc
     2161 actcattttt cagaccagaa gtctttgtag ctcaacggaa caagtggaca ggaccagtag
     2221 gctgggttgg cgcaattgga gctggtattt tctctgctgc tggcggatac aatatcggtc
     2281 gtggcatgat gaagccataa gataattaca tcattaagga aaaggtaatt tcagttacag
     2341 caatatgtat tgaagttacc tttttctatt tagattgaac aattttgaaa gagaaaaatt
     2401 atgaatactg aaaccattta cgccactgtc ttttgcattt tagctgcaac catttctgga
     2461 ttattggtta aatttaatgt aattaaaata gaaacatcaa tcaatagcaa atttatgtta
     2521 ttaggcataa gtatttaatt attggtgttt ttctatccat tttttttaag aaataataat
     2581 aaatgtccca cttattccga aaagaagtct ttgtagccca acaaaataag tggacaggtc
     2641 aggttatctt gacccgtcca ttctcttttt tatttctgac tttttgcgct tttctcattg
     2701 ctctgtgtat cattatcttt ttgatttttg gtagctatac caataaaaca accgttgaag
     2761 gtcaattact tccaactatg ggggtggttc gtgtttactc ttccgatatc ggcacgatta
     2821 cgcataaatt tgttgaagat ggtaactttg tcaaagctgg cgaaccattg ttcaaacttt
     2881 ccacatcgcg ttttggcgaa aaaggaaacg tacaagccaa attggcagca gaagccaacc
     2941 ttaaaaaaac tttggcatta caagaattgg aacgtttaaa gcgcattcat caaaatgagc
     3001 aaaaaaatgt tcataacaac attcatcgtt taaacaatca attagagaat attaaacagc
     3061 aaattacagg gcaaaatcgt caaattcgtt tagcggaaaa aacccttaac aagaacaagt
     3121 ttttagccag tcaaggcgca gtatcccaac aagataagat gaccgccgaa agccatttat
     3181 tggaacaacg ctcacgtttg gagagcctaa aacgtgaaca aaataatgca atcagggaac
     3241 ttgatgaaca gaaaatcaca ttaagcagcc tgcctgaacg ccataaaacc gaattgagcc
     3301 aactcaaccg tgcgattacg gaaatgaacc aagaaatttt ggattttgat ttgaaatccg
     3361 aacaaaccat acgagctagt aaatcaggtt atatttcaac aattaatgtt gatatagggc
     3421 aacaagttga accgtctaaa ttgctgttaa gcattgtccc tgaacaaact gaattggtcg
     3481 ccaatcttta catacccagt aaagctgttg gttttattaa accgaaagat aaagttgttt
     3541 tacgttacca agcgtaccct taccaaaaat ttggacatgc cacaggagaa attatttcag
     3601 ttgccagaac tgctctcggt aaacaagagc tatcaggttt aggtatcatt ttcactaacc
     3661 caaccttatt aaatgaacct gcctatcttg tgaaagttaa attggaaaaa caaacgatta
     3721 aagcatacgg agaaaacaag ccgcttcaaa ttggcatgat tttagaagca gatattctcc
     3781 atgaacgaaa aaaattgtac gaatgggtac ttgacccact ttacagcatt tcaggaaaaa
     3841 tcaattaaaa atggattatt tatcaagact gtcctttgga tttaacaaaa agctacctgt
     3901 cattctgcaa acagaagttg ctgaatgtgg tttagcatgc ctgacatcca tcttgtccta
     3961 ttatggcttt cacactgatt taagaacgtt acgccaaaaa tacaccctgt cattaaaggg
     4021 cgcaaatctt gcagacatca tgagatttgg caatgaaatg aatttaacgc cacgagcttt
     4081 gcgtttagag ttagatgagc tgtcaaattt acaactaccc tgcattctcc attggaactt
     4141 aaaccatttt gttgtacttt gttccatttc caaagacagt atcgtcatta tggaccctgc
     4201 tgtcggtatg cgaaaaatca aaatggacga agtttcacaa aaattcacag ggattgccct
     4261 agaattattc cccaataccc attttgaaga gaaaaaagaa acaaagaaaa tcaaaatatt
     4321 atctctatta agggggattt caggcttaaa acgctcttta attcaaatgc ttatattagc
     4381 tatttctttg gaagtctttg cattggttag tccattcttt atgcaatggg taatagacca
     4441 tgtcattgta actgctgata aaaatttatt actgaccctt actttgggat ttggtttact
     4501 ggctatcctg caacagttaa ttagcctgtt acaagcatgg gtaggtatgc acctatctat
     4561 aactcttaat ttacaatgga aagccaatat atttaaaagg ttacttgact tacctaatga
     4621 ctatttcagt aaacgacatt taggagatgt gatttcaaga tttggttcaa tagatcatat
     4681 ccaagaaaca ctaacttcta ctttttttgt tttagtttta aatagcttaa tggctatttt
     4741 tactttcgtg ttaatgacaa tttacagcac tcaattatcg ctgattgttc ttttaacact
     4801 tgttttgtac atactaattc gttggcttgc atattaccca ttaagaaatg caacagaaga
     4861 aaatattgtt catgaagcca aacaaaactc atatttcatg gaaaccattc gtggtatcca
     4921 atcagttaaa ttatttgata aacattatca aagacatggc acttggatga gcctatttgt
     4981 gaatacagtc aataccaagc tgacaacaga taaactctct gctttatttg aattttcaaa
     5041 taaactgttg tttagcatgg aaaatattat cataatttat cttggtgcaa gcgcaatttt
     5101 agatggttca tttacagtcg gtgttctgat ggcttttttg gcttataaag ggcaatttga
     5161 aagcagaaca gcttctctcg ttgaccaata catccaaatc aaaatgttag ggcttcatgc
     5221 tgaacgtttg gctgacatta ctttaaatga aacagaaact gaaattatta agtataatca
     5281 tatacctaaa ttagataatg aacaactggt tcttaaagtt gaaaacgtct cattcagata
     5341 tgctgataat gagccatatc tttttgaaaa cattaatttg gaatttaaag ataatgaagc
     5401 agttgtttta acaggacaat ctggtcgggg gaagtccact ttgttaaaca ttttaacagg
     5461 tagcctaaaa cctgaaactg gtacagttag tattaatggg catgatatat atcaagtttc
     5521 tccatccttt attaggggat tgagcgggat tgttcgccaa gatgatgtcc tttttgcagg
     5581 ttctattggg gaaaatattt cattttttga tgaaagccca aatatggagc tcattgaaca
     5641 atgtgcaaaa atggcacaaa tacatgacga tatacttaaa atgccaatgg gctatgagac
     5701 cttgattggc gatatgggaa atatcttatc aggtggacaa aagcagagag ttatcttggc
     5761 tcgtgcattg tataaacgac ccaaaattct atttttagac gaagcaagta gccatttaga
     5821 tgtagaaaat gaacaaaaaa ttaaccataa cctaaaaagt cttggtatta tgaaaataat
     5881 ggttgcacac cgccaagaaa caattcaatc ggcagataaa attctgaatt taggttgaac
     5941 agaacaagac ttcatttttc tttaacaaaa agtgaagtct tttttcaaat aatttaatag
     6001 aatacatgaa aatagcggtt taacgttcca tttcccaatc atcacgactg gctttgtgtt
     6061 ttggcgattt ttcagtttcc tttttctgtt gaatttgttg ttttttctgc tcttgttccc
     6121 atttttgggc taatttcacg gtctgagacc tttgcaaaat tccccaaaat tccctaaatt
     6181 cccaccaaga catttagggg atttctca
//
LOCUS       DAXIFD010000117         6159 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.117, whole genome shotgun sequence.
ACCESSION   DAXIFD010000117 DAXIFD010000000
VERSION     DAXIFD010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6159
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.117"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            228..674
                     /gene="yciA"
                     /locus_tag="ACFOCN_001560"
     CDS             228..674
                     /gene="yciA"
                     /locus_tag="ACFOCN_001560"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HFC6970683.1"
                     /translation="MQHEEGNRQRPQGELLLRTVAMPRDTNPNQDIFGGWIMSQMDLG
                     GGILAAEIAQGRIVTVAVQEMNFIRPVKVGNVVCCYGHCVRVGNTSLQLKVEVWVKTL
                     MNDCVTEDRHLVTEAVFTYVAIDAEGNPRPIPKEGNPILAGLLPTP"
     gene            complement(725..1546)
                     /locus_tag="ACFOCN_001561"
     CDS             complement(725..1546)
                     /locus_tag="ACFOCN_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6970684.1"
                     /translation="MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADEL
                     GALFYPLEMDVSRRESVENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETM
                     IQTNVLGLTFLTRKILPNMVARGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
                     LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDEKAAGVYEGVEFIRPEDIAETALW
                     LYRRPAHMNVNTIEIMPVAQTFAGMKVIKKAVPEVREDFEKQSMSLFSRIRSWFK"
     gene            1665..2123
                     /locus_tag="ACFOCN_001562"
     CDS             1665..2123
                     /locus_tag="ACFOCN_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6970685.1"
                     /translation="MKTQISLAAAAITLLLSACGGSGIPSQPKGEISENRTAAFKSMM
                     PDFSRMGKMVKGEEPYDVEKFKQAAAAFADSSKKPFTLFESDPQGNGRALPAVWSDGA
                     KFEAEKTKFAAAVEKLNAAAQTGKLDEIKAAYGETGASCKSCHDSFRAPE"
     gene            complement(2288..3403)
                     /gene="lst"
                     /locus_tag="ACFOCN_001563"
     CDS             complement(2288..3403)
                     /gene="lst"
                     /locus_tag="ACFOCN_001563"
                     /EC_number="2.4.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyllactosaminide
                     alpha-2,3-sialyltransferase"
                     /protein_id="HFC6970686.1"
                     /translation="MGLKKACLTVLCLIVFCFGIFYTFDRVNQGERNAVSLLKDKLFN
                     EEGEPVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAER
                     AYFFHLPYGLNKSFNFIPTMAELKVKSMLLPKVKRIYLASLEKVSIAAFLSTYPDAEI
                     KTFDDGTGNLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNASDEHYTIFKGL
                     KNIMDDGRRKMTYLPLFDASELKTGDETGGTVRILLGSPDKEMKEISEKAAKDFNIQY
                     VAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNV
                     HVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKN"
     gene            complement(3606..3776)
                     /locus_tag="ACFOCN_001564"
     CDS             complement(3606..3776)
                     /locus_tag="ACFOCN_001564"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970687.1"
                     /translation="MAIMAYFGGFVRALFDLGVFERGGVKGRGKWFSRVWRRSEVLCL
                     MCGGIFSVKLIL"
     gene            3836..6061
                     /locus_tag="ACFOCN_001565"
     CDS             3836..6061
                     /locus_tag="ACFOCN_001565"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HFC6970688.1"
                     /translation="MTQKSTIVYTHTDEAPALATQSLLPIVQAFARHADIDVKTSDIS
                     LSGRILAAFPEYLTEAQRVPDALAELGELVKQPDANVIKLPNISASVPQLTAAIKELQ
                     SKGFAVPDYPADPQTDEEKAVRERYDRIKGSAVNPVLREGNSDRRAPKAVKNFAKKNP
                     HSMGAWTKDSKTHVATMQSGDFFHNEQSVIVPEATSVSIVFTDKQGNKKELREPVALK
                     AGEIIDATVMSKKALLAFLAEQVKDAKAKGVLFSLHMKATMMKVSDPIIFGHAVKVFF
                     APVFEKFGDKLAAAGVNVNNGFGNLLANLDKLDADTRTAVEAEIAAVYAANPDLAMVD
                     SDKGITNLHVPSDVIVDASMPAMIRNSGRMWDKNGKAQDTKAVIPDSSYAGVYQATID
                     FCREHGAFDPTTMGTVPNVGLMAQAAEEYGSHNKTFEIEADGQVQVIDAEGKVLMQHD
                     VEAGDIWRMCQTKDAPVKDWVQLAVNRARLSNTPAVFWLDENRPHDKSLLAKVKAYLA
                     ELDTNGLDIRVLAPEEAAKFSLGRLKNGEDTISVTGNVLRDYLTDLFPILELGTSAKM
                     LSIVPLMNGGGMFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALAVSFEHLAQKTGN
                     AKAQVLADTLDAATEKLLLNGKSPKRKAGELDNRGSHFYLTLYWAQELAEQDKDAELK
                     AAFTPLAAALTADEAKIVAELSAVQGKAVDIGGYYAANPEKAAQVMRPSVTFNQALNA
                     L"
BASE COUNT         1650 a         1803 c         1374 g         1332 t
ORIGIN      
        1 ctagattccc actttcgtgg gaatgacggt tcagttgctt agggtaggat ttggcgggat
       61 tggcggactg aagcccactc tacagccccg ccctacaata cgccttgcga atctgtccca
      121 cgcccgccct tgtatgtctc aaatgggtta aactacgcac ttcccgactt cccgtttcgg
      181 gcaggggtgc aggttcgatt tatctttcaa taaaacaagg aaactttatg cagcacgaag
      241 aaggcaaccg ccaacgccct caaggcgaac tgctcctgcg taccgtcgct atgccgcgcg
      301 ataccaatcc caaccaagac attttcggcg gctggattat gtcgcagatg gatttgggcg
      361 gcggcatatt ggcagcggaa atcgcacaag gacgcatcgt taccgtcgcc gttcaggaaa
      421 tgaacttcat ccgcccggtc aaggtcggca acgtcgtctg ctgctacggg cattgcgtcc
      481 gcgtgggcaa tacttccctc cagcttaaag tcgaagtctg ggtgaaaact ttgatgaacg
      541 attgcgttac cgaagaccgc cacctcgtaa ccgaagccgt gttcacttat gtcgccatcg
      601 atgcggaagg caatccgcgc ccgattccga aagaaggcaa ccccatattg gcgggcttat
      661 tgcctactcc gtaaaaatgc ccgtaaaaat gccgtctgaa actgtcttca gacggcattc
      721 cgcatcattt gaaccaagat ctgatgcggg aaaacagcga catactctgt ttttcaaagt
      781 cttcccgcac ttccggcacg gcttttttta tcaccttcat tcctgcaaaa gtctgcgcca
      841 cgggcataat ttcaatcgtg ttcacattca tatgcgccgg ccggcggtac agccacaatg
      901 cggtttccgc aatatcttcg gggcggataa attccacacc ctcatacacg cctgctgcct
      961 tctcgtcatc gcctttgaag cgcacgttgg aaaactccgt attgccgcac aaacccggct
     1021 cgatattggt aacgcggatg ttcttatccg ccaactccgc gcgcaaattc aggctgaact
     1081 ggcgcacaaa cgccttggtc gccccgtaaa cgttgctgcc ggcataagca taattgcctg
     1141 caatcgaacc caaattcatc acataaccgc cgccccgagc caccatattc ggcaaaatct
     1201 tgcgcgttag aaacgtcaaa cccaaaacat tggtttgaat cattgtttcc caatcttcaa
     1261 aatccgcctt gtccgccgtg tccagaccca aagccagccc ggcattgttg atgaggcagt
     1321 cgatgtcgga aaattcatca gggatgccgt ttaaggcgtt ttccaccgac tcgcggcgcg
     1381 acacgtccat ttccaaaggg taaaacaaag cacccaattc atccgccaag gcctgaagcc
     1441 tgtccgcacg acgcgccgca ccgataacgc ggtatcccgc cccgacaaac gcgcggcaca
     1501 tcgcttcgcc gaatcctgcc gaagcaccgg taattaaaac agccattgtt tttcctttct
     1561 ttctcgtttc ccaaacctgt ttcaggtatc ataataccct tcagacggca tcgcgccggc
     1621 tgaaaatgac aacaaccata ccaccacgac aggacacatt caatatgaaa acccaaatca
     1681 gccttgctgc tgccgccatc acactgctcc tttccgcctg cggaggcagc ggaatacctt
     1741 cccaacccaa aggcgaaatt tccgaaaacc gcaccgccgc gttcaaatct atgatgcccg
     1801 acttctcgcg tatgggcaaa atggtcaaag gcgaagaacc ttacgatgtc gaaaaattca
     1861 aacaggcggc agcggcgttt gccgacagca gcaaaaaacc gtttacgctt tttgagtccg
     1921 acccgcaagg caacgggcgc gcactgcccg ccgtttggtc ggatggtgca aaatttgaag
     1981 ccgaaaaaac aaaattcgcc gccgccgtcg aaaaactcaa cgccgccgcc caaaccggca
     2041 aactggacga aatcaaagcc gcctacggcg aaaccggcgc aagctgcaaa tcctgccacg
     2101 acagcttccg cgcgcccgaa taacatccaa aacaaaacaa tgccgtctga agacttcaga
     2161 cggcattttc tttgccattt cagcacacgc aaagcaatca gaaattatcg tcaatccaaa
     2221 tgaaaaaacg ctatccttat ttttacccca cgcactccgc cattttctat tttgatttgc
     2281 tatgcgatta atttttatcg tcaaatgtca aaatcgggat gccggattgg gtaaacaggg
     2341 catacaccgg cttgagccaa taatcttctg gaagggaagc cggtttcaat gcgtaaacgt
     2401 gcacattggg aaaatccttc atcgtcaacg ccgcgccgct gaaaaaggta taaatttcat
     2461 acctcgtatg cgggtttttc ttaatttcgc gcaaaatata gtcttcgatg acatagggcg
     2521 aatttaatgt ggttacgccg gaaagcccgt aggtttggcg ggggtgcggc gcgacatatt
     2581 gtatgttgaa atcttttgcc gccttttccg aaatttcctt catctctttg tcgggtgaac
     2641 ccaaaagtat ccgcaccgtg ccgcccgttt cgtcccccgt cttcagttcg gacgcatcga
     2701 acagcggcag gtaagtcatc ttgcggcggc cgtcgtccat aatgtttttc aaacccttga
     2761 atatcgtgta atgctcgtcg gaagcattgc gggttttggc gatgctccaa tctccgatca
     2821 tcatccgggc aaaattccgc ttgatcgtcc cgtttacaga aaactcatcg cccaaatagc
     2881 tgctgctttg aattaaattg cctgtcccgt cgtcaaaggt tttgatttcc gcatccgggt
     2941 aagtgctcaa aaaggcggca atgctgactt tttccaaact tgccaaataa atccgcttga
     3001 ctttcggcag cagcatcgac tttaccttca gctccgccat cgtcggaatg aaattaaacg
     3061 atttgttcaa accgtagggc aggtggaaaa aatacgcccg ctccgcctta tcctttatct
     3121 gattgaaata ataatcgtat ttttcattcc tgttttcaga catcagcacc acataaaacc
     3181 gctcccccgg atgctgcgcc ataatccttt ccgccacctt catctgcaat atggtatagc
     3241 agaaaatcag attgaccggt tccccctctt cattgaagag tttgtccttc agcagggaaa
     3301 ccgcattcct ttccccctga tttacccggt caaatgtata aaatatcccg aaacaaaaaa
     3361 caatcaaaca caacacggtc aaacaagcct ttttcaagcc catatcccta aaactccatt
     3421 ccgacaaatt gaacatacgc cccgagtgtc ccgggacgga aaaatgcgga attttagcag
     3481 atattccgac agttaccgaa tattatagtg gattaaattt aaatcaggac aaggcgacga
     3541 agccgcagac agtacaagca gtacgacaag gcgaggcaac gctgtactgg tttaaattta
     3601 aaccactata aaatcaattt caccgaaaat atgccgccgc acatcaggca cagcacctcc
     3661 gaccgccgcc aaacgcggga aaaccatttc ccccttcctt tcacgccgcc gcgttcaaac
     3721 acgccaagat cgaacaaagc gcgaacaaag ccgccaaaat atgccataat agccacgcac
     3781 attccccgcg caatgtgttc caaaagaaaa aaccaaccta caagagaata atcctatgac
     3841 tcaaaaatcc accattgttt atacccatac cgacgaagca cccgcgctgg cgacccaatc
     3901 gctgctgccg attgtgcagg cttttgcccg ccacgccgat attgatgtca aaaccagcga
     3961 catttctctc tccggccgta ttttggcggc gtttcccgaa tacctgaccg aagcgcaacg
     4021 cgtacctgat gcgcttgccg aattgggcga actggtgaaa caacccgatg caaacgtaat
     4081 caaactgccg aacatcagcg cgtccgtacc gcaactgact gccgcgatta aagaattgca
     4141 atctaaaggc tttgccgttc ccgactatcc cgccgacccg caaaccgatg aagaaaaagc
     4201 cgtacgcgaa cgctacgacc gcatcaaagg cagcgcggta aaccctgtcc tgcgtgaagg
     4261 caactccgac cgtcgcgccc ctaaagcagt gaaaaacttt gcgaaaaaaa atccgcacag
     4321 catgggcgca tggaccaaag actccaaaac ccacgttgcc accatgcaaa gcggcgactt
     4381 ttttcataac gaacaatctg ttatcgtacc tgaagcgact tccgtatcca tcgtattcac
     4441 cgacaaacaa ggcaacaaaa aagagctgcg cgagcccgtc gccctgaaag ccggcgaaat
     4501 catcgacgcg accgtgatga gtaaaaaagc cctgctcgcc ttccttgccg aacaagtaaa
     4561 agatgcgaaa gcaaaaggcg tgttgttctc gctgcacatg aaagccacta tgatgaaagt
     4621 gtccgacccg attatcttcg gacacgccgt caaagtattc ttcgcgcctg tttttgaaaa
     4681 attcggcgac aaactggctg ccgcaggtgt caacgtcaac aacggcttcg gcaacctgct
     4741 tgccaatctg gacaaactgg atgcggacac ccgcaccgcc gtcgaagccg aaatcgccgc
     4801 cgtttacgct gccaaccccg atttggcgat ggttgattcc gacaaaggca tcaccaacct
     4861 gcacgttccc agcgatgtca tcgtcgatgc ctctatgcct gcgatgattc gcaattccgg
     4921 ccgtatgtgg gacaaaaacg gcaaagcgca agacaccaaa gccgtgattc ccgacagcag
     4981 ctatgccggc gtttaccaag caaccatcga cttctgccgc gaacacggcg catttgaccc
     5041 gacaaccatg ggtactgtgc ccaacgtcgg actgatggcg caagcggcgg aagaatacgg
     5101 ctcgcacaac aaaacctttg aaatcgaagc cgacggtcag gttcaagtca ttgatgcgga
     5161 aggaaaagtc ctgatgcaac acgacgttga agcaggcgac atctggcgta tgtgccaaac
     5221 caaagacgct ccggtcaaag actgggtgca actcgccgtc aaccgcgccc gcctgagcaa
     5281 cacgcctgcc gtgttctggc tcgatgaaaa ccgtccgcac gacaagagcc tgctcgccaa
     5341 ggttaaagcc taccttgccg aactggatac caatggcctc gacatccgcg tcctcgctcc
     5401 tgaagaagcc gccaagttca gcttgggtcg tctgaaaaac ggcgaagaca ccatctccgt
     5461 aaccggtaat gtcttgcgcg actacctgac cgacttgttc ccaattttgg aactcggcac
     5521 aagcgcgaaa atgctgtcta tcgttccatt aatgaacggc ggcggtatgt ttgaaaccgg
     5581 cgcgggcggt tctgcaccga aacacgttca acagttcctc gaagaaaacc acctgcgttg
     5641 ggactctttg ggcgaattcc tcgcactcgc cgtatcgttt gaacatttgg cgcaaaaaac
     5701 cggcaatgcc aaagcccaag tcctcgctga cactttggat gccgccaccg aaaaactgct
     5761 gttgaacggc aaatcgccta aacgtaaagc cggcgaactc gacaaccggg gcagccattt
     5821 ctaccttacc ctctactggg cgcaagaatt ggcggagcaa gacaaagatg ccgaactgaa
     5881 agccgcattt acgccattgg cagccgcttt gaccgccgac gaagcgaaaa tcgttgccga
     5941 gctttccgcc gtacaaggca aagcggtcga catcggcggc tactacgcag ccaatcctga
     6001 aaaagcggca caagtgatgc gtccgagcgt aacctttaat caggcactaa acgccttata
     6061 agcacaaagg taaaaatgcc gtctgaacat tcgtcgttca gacggcatta gttatcccta
     6121 tctgcctgat tatgattaaa cgccgcaccc attggatat
//
LOCUS       DAXIFD010000118         6136 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.118, whole genome shotgun sequence.
ACCESSION   DAXIFD010000118 DAXIFD010000000
VERSION     DAXIFD010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6136
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.118"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(550..1134)
                     /gene="rnhB"
                     /locus_tag="ACFOCN_001566"
     CDS             complement(550..1134)
                     /gene="rnhB"
                     /locus_tag="ACFOCN_001566"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HFC6970689.1"
                     /translation="MHILTAGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSE
                     KKRDALAEMIKNQAVAWHVAAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDG
                     NRIPEHLNIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
                     TKQHLEALEKYGVLPEHRRDFAPVRNLFAQQALF"
     gene            complement(1202..3097)
                     /gene="mnmG"
                     /locus_tag="ACFOCN_001567"
     CDS             complement(1202..3097)
                     /gene="mnmG"
                     /locus_tag="ACFOCN_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HFC6970690.1"
                     /translation="MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIET
                     LGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQA
                     DRILYKATIREMLENQENLDLFQQAVEDVTLDGERISGVVTAMGVEFKARAVVLTAGT
                     FLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQL
                     TEQPGDTPVPVMSVRGSADMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVG
                     PRYCPSIEDKINRFADKDSHQIFLEPEGLTTHEYYPNGISTSLPFDIQIALVRSMKGL
                     ENAHILRPGYAIEYDYFDPRNLKASLETKTIQGLFFAGQINGTTGYEEAAAQGLLAGA
                     NAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR
                     LTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSR
                     EANLHDLLRRPNLDYAALMTLEGAMPSERLSAEVVEQVEIQVKYQGYIDRQNEEIDSR
                     RDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLK
                     RGFKDAK"
     gene            complement(3372..4799)
                     /locus_tag="ACFOCN_001568"
     CDS             complement(3372..4799)
                     /locus_tag="ACFOCN_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6970691.1"
                     /translation="MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQF
                     RLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVF
                     WMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSL
                     IFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVV
                     PLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKR
                     GLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYG
                     DLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITA
                     VFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKL
                     KMGKDPEFKLSEHPGLKRRIKSDVW"
     gene            4959..5948
                     /gene="pdxA"
                     /locus_tag="ACFOCN_001569"
     CDS             4959..5948
                     /gene="pdxA"
                     /locus_tag="ACFOCN_001569"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HFC6970692.1"
                     /translation="MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKHLLRA
                     RAEALGKSVVLRDFDPESGGAAYGELEVLHIPAVEAVEAGKLNPANAAYVLQLLDTAL
                     AGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLRV
                     ALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFCIKNPKILVAGLNPHAGEGGHL
                     GHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYH
                     SFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL"
BASE COUNT         1275 a         1612 c         1792 g         1457 t
ORIGIN      
        1 tcattcccgt aaaaacaaaa aatcaaaaca gaaaactgaa atatcgtcat tcccgcgcgg
       61 gcgggaatct aggtctgtcg gtacggaaac ttatcgggaa aaacggtttt tccaaccctg
      121 agactccgga ttcctgtttt cgcgggaatc cggttttttg agtttcagtc atttttgata
      181 aattcttgta gctttgagtt tctagattcc cgcttttgcg ggaatgacgg tttggaagtt
      241 acctgaaatt caaaaaaaaa cggaaaccgg acggattgga ttcccgtttt cacgggaatg
      301 acggatttta ggtttctttt ttgattttct gtttttcgcg ggaatggcgg tttggaagtt
      361 acctgaaatt caaaaaaaaa aaacggaaac cggacggatt ggattcccgc ctgcgcggga
      421 atgacggatt ttaggttttt ttttttgatt ttctattttt cgcaggaatg acggtttggg
      481 ttctttctct ttggagttgc gatgccggaa atgccgtctg aaggcttcag acggcatttt
      541 tgtgccggtt taaaacaagg cctgctgcgc gaacaggttt ctgacggggg cgaagtcgcg
      601 gcggtgttcg ggcagcacgc cgtatttttc gagggcttcc aaatgctgct tcgtgccgta
      661 acctttgtgt ttgtcgaaac cgtattgggg atggcgttgc gccagtgcgt acatttccgc
      721 atcgcgggcg gtctttgcca aaacggatgc ggcggatatt tcgatgattt tgctgtcgcc
      781 tttgacgacg gcttcggcag ggatgttcaa atgttcggga atgcggttgc cgtcgatgaa
      841 tattttttcg ggacgcacag ccaaaccgtc aacggcgcgt ttcatcgcga gcatggtggc
      901 gtgcaggatg ttgaggctgg cgatttcttc gggcccggcg gcggcgacgt gccacgcaac
      961 cgcctgattt tttatcattt cggcaagcgc gtcgcgtttt ttctcgctga gttttttgga
     1021 gtcggtcagt ccgggcaggt cgaatatttc cggaaggatg acggcggcgg caaacacgct
     1081 gccgactaaa ggcccgcgcc ctgcctcgtc cacgccggcg gtcagtatgt gcatgatgtt
     1141 tcctgtcggg atggcacgat gccgtctgaa cggtgtttca gacggcatcg cgccgatgtg
     1201 tttatttcgc gtctttaaac ccgcgcttca aatgcaccat cagcaatgcc actgccgcag
     1261 gcgttacgcc ggaaatgcgg cttgcctgcc cgacggtttc aggtttgtgc tggttgagct
     1321 tttgctgcac ttctgccgac aagcctttga ctttgccgta atcgatgccg tcgggcagtt
     1381 ttaaggtttc gatgtcgcgg cggctgtcga tttcttcgtt ttggcggtcg atatagcctt
     1441 ggtatttgac ttggatttcg acttgttcga ccacttcggc ggagaggcgt tcagacggca
     1501 tcgcgccttc gagcgtcatc agcgcggcgt agtcgaggtt cgggcggcgc aggaggtcgt
     1561 gcaggttggc ttcgcggctg agcttttgcc cgaatacgcg gatttgttcg tcttcggcga
     1621 gtttttgcgg cgtgtaccac gttgttttca aacgttggat ttcgcgttcg atggcttcgc
     1681 gtttttcgtt gaacatgcgc cattgcgctt cacccaccaa gccgattttg tagccgtctt
     1741 cggtcaggcg catatcggcg ttgtcttccc tgagttgcag gcggtattcg gcacggctgg
     1801 tgaacattcg gtagggttcg ttcacgcctt tggtgatgag gtcgtccacc aatacgccga
     1861 gataggcttg ttcgcggcgc agcaggagcg ggtcttgttc gcggacgtat tgcacggcgt
     1921 tcgcgcctgc cagcagtcct tgcgcggcgg cttcttcgta gcccgttgtg ccgttgattt
     1981 gtccggcgaa gaagaggcct tggatggttt tggtttcgag gctggctttg aggttgcgcg
     2041 ggtcgaagta gtcgtattcg atggcgtagc cagggcgcag gatatgggcg ttttcaaggc
     2101 ctttcatgct gcgcacgagc gcgatttgga tgtcgaacgg caggctagtg gagataccgt
     2161 ttggatagta ttcgtgcgtg gtcaggcctt cgggctcgag gaaaatctgg tggctgtctt
     2221 tgtcggcgaa gcggttgatt ttgtcttcga tagacggaca ataacgcgga cccacacctt
     2281 cgattttgcc agtaaacatg gggctgcggt cgaagcctga acggatgatg tcgtgggttt
     2341 gcgtgttggt atgcgtaatc cagcaggaca cttggcgagg gtgcatatcg gcgctgccgc
     2401 gtacggacat tacgggaacg ggcgtgtcgc cgggctgttc ggtcagttgg gagaagtcaa
     2461 tcgtgcgccc gtcaatacgc ggcggcgtgc cggttttcag acggccttgc ggcaggttca
     2521 attcgcgcaa acggccgccc agcgatttgg cggcggggtc gccagcgcgg ccgccttcgt
     2581 agttttccaa accgatgtgg attttgccgg acaaaaacgt gccagcagtt agcacgacgg
     2641 cgcgtgcttt aaactccacg cccatcgcgg taaccacgcc gctgatgcgt tcgccgtcga
     2701 gcgttacgtc ttcgacggct tgttggaaaa ggtcgaggtt ttcttggttt tccaacattt
     2761 cgcggatggt ggctttgtac aggatacggt cggcctgcgc gcgcgtggct cgcactgccg
     2821 cgcctttgct ggcgtttagg cggcggaact ggatgcctga tttgtcggtg gccaacgcca
     2881 tcgcgccgcc gagcgcgtcg agttcgcgta ccaaatgccc tttgccgatg ccgccgatag
     2941 aggggttgca cgacatttgt ccgagcgttt cgatattgtg tgtgagcaaa agcgtctgcg
     3001 cgcccatacg ggcggcggcg agcgcggctt ccgtgcctgc gtgtccgccg ccgacgacga
     3061 taacgtcgta ggttttgggg taaatcatgt gggtcatgtg tgtattgcct gacggtgttt
     3121 cagacggcat ttatagtgga ttaacaaaaa ccagtacagc gttgcctcgc cttgtcgtac
     3181 tgcttgtact gtctgcggct tcgtcgcctt gtcctgattt ttgttgaacc actatattca
     3241 atatgccgtc tgaaaaacga aatggattca aaagtaaagg gttgggattg tacgcttgtt
     3301 cgccctgttt ttacagtgtg cggaaaggga aaagccgctt cgcggggaag cggctccggt
     3361 aagggcggga tttaccaaac gtcggatttg atacggcgtt tcaggcccgg atgttcggaa
     3421 agtttgaact cggggtcttt gcccattttc agcttggcgg tgtaatcgcg cagcagcata
     3481 aacgccaagg gcgagagcag caggatggcg acaaggttga tccacgccat aatgcccatc
     3541 gccatatccg ccatatccca gaccaaaggc acattggcaa ccgcgccgaa atagacccac
     3601 gccaaaacca gcatacggaa aacggcggta atcagccaat ggcttttgat gaattggacg
     3661 ttggactcgg cataggcata gttgccgata acggtggaaa aggcaaacat aaacaggatg
     3721 acggcgagga agcccgcgcc ccattgcccc acttggctga caatcgccgc ctgcgtcagc
     3781 gccgcaccgc tcaaatcgcc gtaaggctgt tggtaaatca agatgatgaa ggcggtgcaa
     3841 gaacaaacga tgatggtatc gacaaacacg cccagcattt gaatcatacc ttgcgaaaca
     3901 gggtgtttca cttcggcggc ggcggcggcg ttcggcgcgg aacccatacc cgcctcgttg
     3961 gaatacaggc cgcgtttgat gcccatcatc atcgtttgcg aaatcagacc gccgagtaag
     4021 ccgcctgctg ccgcgtcgaa tttgaacgcg cccgaaaaaa tctgaccgaa cacgtccgga
     4081 atcatcggaa tattggtcaa aatgatgaaa agcgcgataa agaggtacaa aaccgccatc
     4141 agggggacga cgatttccgc cgctttagat atgcgcctga tgccgccgaa gataatcggc
     4201 gcggttaaaa tcaccagggc gacgccgaca taatgaggct cccaacccca cgccgctttg
     4261 acggtatcgg caatggtatt ggtctgaacc gcttcaaaca caaagccgaa acagaaaatc
     4321 aggctcaggg cgaacaacac gcccagccat ttctgcccca gcccttgagt gatgtagtag
     4381 gcagggccgc cccggaaatg gtggttgtcg tagtcgcgga ctttaaagag ctgcgccagc
     4441 gaagattcga caaacgccga actcataccg attaaggcgg ttacccacat ccaaaacacc
     4501 gcgcccggcc cgccgacttt gatggcgatt gccacgcccg cgatattgcc cacgcccacg
     4561 cggctggcaa ggccggttac aaatgcctga aacggcgtga tgccgtgagg gtcgtccccc
     4621 tgtttgcggc cgccgagcat ttctttgatg ctgcgcccga acaggcggaa ttggacaaag
     4681 cccgtggtta cggtgaagaa aagccccgta cccaaaagca tataaaccaa gtatgaccac
     4741 atcggatcgt tgatggcgcc gacccagccg tgcagccatt cggtaaagtt ctcgttcata
     4801 tcgcttcctt aaagttgaaa ctcgcacata ttggcggtat gcaagcaggg tttaaatttt
     4861 gtaaacgccc attctagcag attgtcaaca aaatcagaaa aatttacatc gccgcgcggc
     4921 tgcggcgtta gaatcgcatt ttgtttggag caaacacgat gaaacagcct gtttttgccg
     4981 ttacttccgg cgagcctgcc ggcatcggcc ccgatatttg tttggacttg gcgtttgcac
     5041 gcctgccctg ccgctgcgcg gtattgggcg acaaacacct gttgcgcgcg cgcgccgaag
     5101 ccttgggcaa aagcgtcgtc ctgcgcgact tcgatccaga atcaggcggc gcggcatacg
     5161 gcgagctgga agtgctgcac atccctgccg tcgaagcggt tgaggcgggc aaactcaatc
     5221 ccgccaacgc cgcctatgtg ctgcaacttt tggacaccgc gctcgcaggc atttcagacg
     5281 gcattttcga cggcatcgtt accgcgccgc tgcacaaagg catcatcaac gacgcgcgcg
     5341 caagcacagg ttttttcagc ggacacaccg aatatctggc ggaaaaaagc ggcacggggc
     5401 aggtcgtgat gatgcttgcc ggcaaaggcc tgcgcgtcgc cctcgtaacg acccacctgc
     5461 cgctgaaaga cgttgccgcc gccatcacgc aaccgctgat tgaaagcgtc gcacgcattt
     5521 tgcatcacga cttaaaacac aaattctgca tcaaaaatcc caaaatccta gtcgccggac
     5581 tcaaccccca cgccggtgag ggcggacacc tcggacacga agaaaccgac accattatcc
     5641 ccgcgctcga aaacctgcgc cgcgaaggga taaacctcgc cggcccgtat ccggcggata
     5701 ccttgttcca accgtttatg ctcgaaggtg cggatgccgt attggcgatg taccacgacc
     5761 aagggctgcc cgtgttgaaa taccacagtt tcgggcaggg cgtgaacatc acactggggc
     5821 tgccctttat ccgcacctcc gtcgatcacg gcaccgcgct cgatttggcg gcaaccggca
     5881 gggcggattc cggcagcctg ataactgccg tggagaccgc cgtcgagatg gcgcgcggca
     5941 gcctttaaag atgataaaag acccgtcatt tccgcgcagg cgggaatccg gtctgttcgg
     6001 tttcagttgt ttttgggttt cgggtaattt ccaaatcgtc attcccgcgc aggcgggaat
     6061 ccagaccttc gggcgacggc aatattcaaa gattatctga aagtttgagg ttctagattc
     6121 ccgttttcac gggaat
//
LOCUS       DAXIFD010000119         6119 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.119, whole genome shotgun sequence.
ACCESSION   DAXIFD010000119 DAXIFD010000000
VERSION     DAXIFD010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6119
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.119"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(152..2080)
                     /gene="dnaK"
                     /locus_tag="ACFOCN_001570"
     CDS             complement(152..2080)
                     /gene="dnaK"
                     /locus_tag="ACFOCN_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HFC6970693.1"
                     /translation="MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLD
                     GGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAW
                     VKAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRI
                     AGLDVKRIINEPTAAALAFGMDKGDNKDRKVAVYDLGGGTFDISIIEIANLDGDKQFE
                     VLATNGDTFLGGEDFDQRLIDHIIAEFKKEQGIDLKQDVMALQRLKEAAEKAKIELSS
                     GQQTEINLPYITMDATGPKHLAMKITRAKFESLVEDLIARSIEPCRTALKDAGLSTSD
                     IDDVILVGGQSRMPKVQEAVRDFFGKEPRKDVNPDEAVAVGAAIQGEVLSGGRSDVLL
                     LDVTPLSLGIETMGGVMTKLIQKNTTIPTKASQVFSTAEDNQSAVTIHVLQGERERAS
                     ANKSLGQFNLGDIAPAPRGMPQIEVTFDIDANGILHVSAKDKGTGKAANITIQGSSGL
                     SEEEIERMVKDAEANAEEDKKLTELVASRNQAEALIHSVKKSLADYGDKLDAAEKEKI
                     EAALKEAEEAVKGDDKAAIDAKTEALGAASQKLGEMVYAQAQAEAQAGESEQANASAK
                     KDDDVVDADFEEVKDDKK"
     gene            complement(2288..2560)
                     /locus_tag="ACFOCN_001571"
     CDS             complement(2288..2560)
                     /locus_tag="ACFOCN_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970694.1"
                     /translation="MKKTGKYLIYAAAFTAFCFAFQENRSEAKQPDITLSASLCEQFN
                     ILNAKDMDAEQVSLSKECDIIESSHDWEKEYGNLNEQEMLAGIVYE"
     gene            2746..3432
                     /locus_tag="ACFOCN_001572"
     CDS             2746..3432
                     /locus_tag="ACFOCN_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6970695.1"
                     /translation="METFKDRLVFLWKSEAKQAKIASDIEMTIAGFSRIWNEGGLPKS
                     ETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFVPRYDIRA
                     AAGYGQFVDHEEPVFTMAFRRHWIENYVTRNTKNLSVISVKGDSMEGVLNDGDSILVN
                     HSENTPRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNHPADDVEII
                     GRVEWFGRTI"
     gene            3564..3902
                     /gene="erpA"
                     /locus_tag="ACFOCN_001573"
     CDS             3564..3902
                     /gene="erpA"
                     /locus_tag="ACFOCN_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HFC6970696.1"
                     /translation="MSDESPIIFTDSCCAKVADLIAEENNPDLKLRVFVNGGGCSGFQ
                     YGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAET
                     TCGCGSSFSV"
     gene            3919..4065
                     /locus_tag="ACFOCN_001574"
     CDS             3919..4065
                     /locus_tag="ACFOCN_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970697.1"
                     /translation="MPSERSDGIFTFGKYIIGMNSHIIRLFEDESGFPKGTGGTVSGV
                     FVPL"
     gene            4062..4526
                     /locus_tag="ACFOCN_001575"
     CDS             4062..4526
                     /locus_tag="ACFOCN_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6970698.1"
                     /translation="MIEMSKDYRNDLYDVYVSYPPKVDCGLIRECLRENLGEEKAEGL
                     IESLDSKPQVLVEEKCTWEKRAELHDYFSYLGLDIITRRYMELETVVPPEEGEGEGEG
                     GDGEIPEYLELHSEWEDDISAPSQAEPPPRNIKPLVFGLLIAFLGYLLGKIF"
     gene            4561..6072
                     /gene="ubiB"
                     /locus_tag="ACFOCN_001576"
     CDS             4561..6072
                     /gene="ubiB"
                     /locus_tag="ACFOCN_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HFC6970699.1"
                     /translation="MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSK
                     LKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLS
                     REQIEKSLGQSIEKLYAEFETEPVASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQ
                     DLSLMRFGAVWVERLFADGKRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFQNS
                     NMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFR
                     DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATA
                     HIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQ
                     LVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPDWAQ
                     IIPSLPRKISALIDENRQQEMRDAYIHLVKVQQRQSLWLAVIAVVLLLILLLK"
BASE COUNT         1378 a         1358 c         1645 g         1738 t
ORIGIN      
        1 aaaaatttcc agagaaccga tacaacagtt ggaacttggg tttgggaata ttacggtaga
       61 tgaacttgga acctctgtta tgctatggtc ttttatctca attgaaaaaa gcgcgaatca
      121 aacggttcgc gcttttttca gacggtatta attatttttt gtcgtctttt acttcttcaa
      181 agtcggcatc tacgacatca tcgtctttct ttgcagaagc attggcttgt tcgctttcgc
      241 ctgcttgggc ttcagcttgt gcttgagcgt aaaccatttc ccccagtttt tggctggctg
      301 cgcccagcgc ctcggttttg gcatcgatag cggctttgtc gtcgccttta actgcttctt
      361 cggcttcttt cagcgcggct tcgatttttt ctttctcggc tgcgtcgagt ttgtcgccgt
      421 agtcggccaa agattttttc acagagtgaa tcagggcttc agcttggttg cgggaagcga
      481 ccaattcagt cagtttttta tcttcctcgg cattggcttc ggcatctttc accatgcgtt
      541 cgatttcttc ttcgctcaaa cctgaagaac cttggatggt gatgttggct gctttgccag
      601 tgcctttgtc tttggcggaa acgtgcagga tgccgttggc gtcgatgtcg aaggtgactt
      661 cgatttgcgg cataccgcgc ggtgcgggtg cgatgtcgcc caagttgaac tgacccaaag
      721 atttgttggc agaagcgcgt tcgcgttcgc cttgcagtac gtggatggtt actgcgcttt
      781 ggttgtcttc ggcggtagag aacacttgcg acgctttagt cgggatagtt gtgttctttt
      841 gaatcagctt ggtcatcacg ccgcccatgg tttcgatacc caaggacaga ggggttacgt
      901 ccagcagcaa tacgtcgctg cggccgccgc tcaatacttc gccttggatc gctgcgccta
      961 cggcaacggc ttcgtcaggg ttcacgtctt tgcgcggttc tttgccgaag aaatctctaa
     1021 cggcttcttg tactttcggc atacgggact gaccgccgac caaaattacg tcgtcgatgt
     1081 cgctggtgct caagccggca tctttcaatg cggtgcggca aggctcgata gagcgggcaa
     1141 tcaggtcttc aaccaggctt tcgaatttgg cgcgggtaat tttcatcgcc aagtgtttcg
     1201 ggccggttgc gtccatggtg atgtacggca ggttaatttc ggtttgctgg ccgctggaca
     1261 attcgatttt ggctttttcg gcagcttctt tcaggcgttg tagagccatc acgtcttgtt
     1321 tcaaatcaat gccttgttct tttttgaact cggcgatgat gtggtcgatg aggcgttggt
     1381 cgaagtcttc accgcccaag aaggtatcgc cgttggttgc caatacttcg aattgtttgt
     1441 cgccgtcgag gttggcgatt tcgatgatgg aaatatcgaa agtaccgccg cccaagtcat
     1501 atacggctac tttgcggtct ttgttgtcgc ctttgtccat accgaatgcc aaagcggctg
     1561 cggtcggctc gttgatgatg cgtttcacgt ccaaaccggc gatacggcct gcgtctttgg
     1621 tggcttgacg ttggctgtcg ttgaagtagg cagggacggt aatcacggct tcggttactt
     1681 tttcgcccaa gtaagcttcg gcggcttctt tcattttacg caggacttct gcggaaattt
     1741 gaggaggaga cagctctttg ccttgtgctt ttacccatgc gtcgccgttg ttggctttga
     1801 tgatttcgaa aggcatagat tcgatgtcgc gttggacttc tttgtcttca aatttgtggc
     1861 cgatcaaacg tttggcggcg taaatagtgt ttttggcgtt ggttaccgct tggcgtttgg
     1921 caggcgcacc gacgaggatt tcgccgccgt ccaaataagc gataacggac ggcgtggtgc
     1981 gtgcgccttc tgcgttttcg atcactttgg tttgaccgtt ttcggaaatg gccaaacaag
     2041 agttggttgt acctaagtcg ataccgatta cttttgccat gtggataatc ctatttgatt
     2101 ttgcttattt tgagaaatat gttggaacat tttgtcccga tgggctgtaa atagggcggg
     2161 cggcgggctg tttcaagcta cagcatggct ataagtatat aactttatga atatattggt
     2221 tttatatttg atttaataca tttggctcca atgcattcaa gcataatgtt tcaaatggca
     2281 ggcaggttta ttcatagacg atgccggcga gcatttcctg ttcgttcaag ttgccgtact
     2341 ctttttccca gtcgtgtgaa gactcgatga tgtcgcattc tttggaaagg gagacttgtt
     2401 ctgcatccat atctttggcg ttcagtatgt tgaattgttc gcatagggat gcggataaag
     2461 tgatgtcagg ctgtttggct tcagaacggt tttcttggaa ggcaaagcag aatgcggtaa
     2521 atgccgcagc atagataaga tatttgccgg ttttcttcat tttctatcct ttttctgtca
     2581 actcaggatt aaacctatgg aaaatcttaa aaattatgta ttgagtaaga aaaatcataa
     2641 tttaaattta gtttatcata gttgttccgt ttttgggata gctaaggtaa aatatatttc
     2701 atgtttactt tagatgattg aatgaagggg agcggaagga tatttatgga aacctttaaa
     2761 gacagactgg tttttttatg gaaaagcgaa gcgaagcagg caaaaatcgc atccgatatt
     2821 gaaatgacga ttgcgggctt cagcaggata tggaatgaag gcggtctgcc gaagtctgaa
     2881 acattaaaaa aaatcaagca gttgaagggg tgtagtatcg attggctgct gaccggggag
     2941 ggtaatccgt ttccggatga agccccaaaa aaatcccttg cttacgatac cttgggaaat
     3001 gaagtcgata cggacgagtt tgtctttgtg ccgagatatg atattcgggc ggctgcggga
     3061 tacgggcagt ttgtcgatca tgaggaaccg gtatttacaa tggcgttcag acggcattgg
     3121 attgagaatt atgttacccg caatacgaaa aacctgtctg taatttccgt caagggggat
     3181 tcgatggagg gggttttgaa tgacggcgat tcgattttgg tcaaccatag cgagaatacg
     3241 ccgagggacg gactgtatgt gttgcggatt aatgaaaatc tgctggttaa acgtttacag
     3301 attgtaccgg gcgggataat caacgttatt tccgccaacg aggcttaccc tgcttttgaa
     3361 attaatttga atcatcctgc cgatgatgtg gaaatcatcg ggcgggtcga gtggttcggc
     3421 aggacgattt gagtttgggg cttgaaatcg ggagcggtca aacttatctg taaggcagtt
     3481 ccttttcagg gaacaagccc ccgcttgcct ttgaaggggg tttgagagag aatgcagaaa
     3541 atattatatt aaggaataac accatgtcgg atgaaagccc tattattttt actgacagct
     3601 gctgtgccaa agttgccgat ttgattgccg aagaaaacaa tcccgatttg aaattgcggg
     3661 tttttgtcaa tggcggcggc tgttcgggtt tccagtacgg atttactttt gatgaaatca
     3721 aaaacgacga cgattttgaa attgagaaaa acggtttggt ctttttggtc gatccgatga
     3781 gctatcaata tctggtcggc gcggaaatcg actatacgga aagtttgcag ggttcgcaat
     3841 tcgtcatccg caatccgaat gcggaaacaa cctgcggttg cggatcgtcg ttttccgtat
     3901 gaccgcttgg tttgtgtgat gccgtctgaa cgttcagacg gcatttttac ttttggaaaa
     3961 tatattatcg ggatgaattc acatataatc cgattgtttg aagatgaatc gggtttcccg
     4021 aaaggaacgg gcggaacggt atcaggcgta tttgttccct tatgattgag atgagtaaag
     4081 attaccgaaa cgatttgtac gatgtatatg tttcctaccc gcccaaagtg gattgcgggc
     4141 ttatccggga gtgtctcagg gagaatctcg gcgaagaaaa ggcggaagga ttgattgagt
     4201 ccctcgattc caaaccgcaa gtgctggttg aggaaaaatg tacctgggaa aagcgggcag
     4261 agttgcacga ttatttcagc tatttgggtt tggatattat tactcggaga tatatggagt
     4321 tagaaacggt cgtgccgccg gaggaagggg agggcgaagg agaaggcggg gatggggaaa
     4381 tacccgaata tcttgaactt catagcgaat gggaagatga tatttccgca ccttcgcaag
     4441 ccgaaccgcc gccccgcaat atcaaaccgc tggttttcgg gctgctgata gcctttttgg
     4501 gctatctgct cggtaagatt ttttgattgt ccgataaatg ctgtattcgg gattttatat
     4561 atgaaatggt tgaaacgcct gacggttatt gtcgggactt tttaccgcta tcggctggca
     4621 ggtctgtgcg cttcgctgat gggtagcggt tggatatgcg ctctgctgaa aatgatgccg
     4681 cagtcgtcca aattgaaaaa cgaaccgcct gccgtccgtc tgcgccttgc cttggaaagc
     4741 ctggggccga ttttcatcaa gttcgggcag gttttgtcca cacgccctga tttgattccg
     4801 cacgattacg ccgtcgaact ggcaaagctg caagacaaag tgccgccttt tgacgcgcgg
     4861 ctttcgcgtg aacaaatcga aaaatcgttg ggtcagtcca tcgaaaagct gtatgcggaa
     4921 tttgaaaccg agcccgtcgc cagcgcgtcc atcgcccaag tacacaaagc ccgcctgcat
     4981 tcgggcgaac gagtggctgt caaagttttg cgccccaacc ttttgcccct tatcgaacag
     5041 gatttgtcgc tgatgcgttt cggcgcggtt tgggtggagc gtctgtttgc cgacggcaag
     5101 cgtctgaagc cgctcgaagt ggtggcggag ttcgacaaat acctgcacga cgagttggat
     5161 ttgatgcgcg aagccgccaa tgccggacag ctcgggcgca atttccaaaa cagcaatatg
     5221 ctgattgtgc ccaaggtgtt ttacgactac tgcaccagcg acgtgctgac aatcgaatgg
     5281 atggacggca cgccggttgc cgacatcgcc aaactcaaag cagacggcat cgatttgcac
     5341 aaactcgccg attacggcgt ggaaatcttt ttcacgcagg tcttccgcga cggctttttc
     5401 cacgcggata tgcaccccgg caatattttg gttgccgccg acaaccgcta catcgccctc
     5461 gatttcggca tcgtcggcac gctgaccgat tacgacaaac gttatctcgc catcaatttc
     5521 ctcgcctttt tcaaccgcga ttaccggcgc gtcgccaccg cccacatcga atcgggctgg
     5581 gtgcctgccg acacgcgtgc ggaagaattg gaagccgccg tccgcgccgt gtgcgaaccg
     5641 gtgttcaaca aaccgatttc gcagatttcc ttcggcttgg tgctgatgcg cctgtttgaa
     5701 gtcagccgcc gcttcaatgt cgaaatccaa ccgcagcttg tgctgctgca aaaaacgctg
     5761 ctcaacatcg aaggcttggg ccgccagctc gatcccgatt tggacttgtg gaaaaccgcc
     5821 aaaccgtttt tggtgaaatg gatgaacggg caggtcggcc ctaaagccct ttggcgcaac
     5881 ctcaaaaacg aagcccccga ctgggcgcaa atcatccctt cattgccgcg caaaatcagt
     5941 gcgttgattg atgaaaaccg ccagcaggaa atgcgtgatg cctatatcca tttggtcaaa
     6001 gtgcagcagc ggcaaagcct gtggctggct gtgattgcgg ttgttttgct gctgattttg
     6061 cttttgaaat aggctttgtc cgaatcatcg cccgactccg cccgtttata aggaaatcg
//
LOCUS       DAXIFD010000120         5957 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.120, whole genome shotgun sequence.
ACCESSION   DAXIFD010000120 DAXIFD010000000
VERSION     DAXIFD010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5957
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.120"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..406)
                     /locus_tag="ACFOCN_001577"
     CDS             complement(<1..406)
                     /locus_tag="ACFOCN_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HFC6970700.1"
                     /translation="MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARC
                     GLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAE
                     YRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQAS"
     gene            complement(442..555)
                     /gene="rrf"
                     /locus_tag="ACFOCN_001578"
     rRNA            complement(442..555)
                     /gene="rrf"
                     /locus_tag="ACFOCN_001578"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(652..3543)
                     /locus_tag="ACFOCN_001579"
     rRNA            complement(652..3543)
                     /locus_tag="ACFOCN_001579"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(3950..4025)
                     /locus_tag="ACFOCN_001580"
     tRNA            complement(3950..4025)
                     /locus_tag="ACFOCN_001580"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3990..3992),aa:Ala,seq:tgc)
     gene            complement(4031..4107)
                     /locus_tag="ACFOCN_001581"
     tRNA            complement(4031..4107)
                     /locus_tag="ACFOCN_001581"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4071..4073),aa:Ile,seq:gat)
     gene            complement(4208..5748)
                     /locus_tag="ACFOCN_001582"
     rRNA            complement(4208..5748)
                     /locus_tag="ACFOCN_001582"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         1292 a         1741 c         1280 g         1644 t
ORIGIN      
        1 cagaagcctg atccttcagc ttcgccagca ccgcagggcc gatgcccttt accttggtca
       61 aatcgtccac agacttgaac gcaccgtttt gcgcacggta ttccgcaatg gccttcgcct
      121 tcgcagggcc tatgcccggc agcgcctcca actcctgctg cgaagccgca ttgatgttta
      181 ccgccgcaag ggagaaggcg caggagaaca gcatacagaa cagcacgaac attttcttca
      241 tggtttttcc tttaagggtt gcaaacaata aaccgcatct tgcgacgata aaacgagtca
      301 ttctaaaatg aatatcccaa agtttcaagc cgttcctccg caaacccgac cggacgccgt
      361 acggatgccg tcccgccatc cccgacattt tttccgggta aagcaaaaac ccccgaataa
      421 tcgggggttt tctgaaaggg tgtttggcag tgacctactt tcgcatggaa gaaccacact
      481 atcatcggcg ctgagtcgtt tcacggtcct gttcgggatg ggaaggcgtg ggaccaactc
      541 gctatggccg ccaaacttaa actgttacaa atcggtaaag ccttaatcaa tatattcggt
      601 aatgactgaa tcagtcagta agcttttatc tcttgaagtt cttcaaatga tagagtcaag
      661 cctcacgagc aattagtatg ggttagcttc acgcgttacc gcgcttccac accccaccta
      721 tcaacgtcct ggtctcgaac gactctttag tgcggttaaa ccgcaaggga agtctcatct
      781 tcaggcgagt ttcgcgctta gatgctttca gcgcttatct cttccgaact tagctacccg
      841 gctatgcaac tggcgttaca accggtacac cagaggttcg tccactccgg tcctctcgta
      901 ctaggagcag cccccgtcaa acttccaacg cccactgcag atagggacca aactgtctca
      961 cgacgtttta aacccagctc acgtaccact ttaaatggcg aacagccata cccttgggac
     1021 cgactacagc cccaggatgt gatgagccga catcgaggtg ccaaactccg ccgtcgatat
     1081 gaactcttgg gcggaatcag cctgttatcc ccggagtacc ttttatccgt tgagcgatgg
     1141 cccttccata cagaaccacc ggatcactat gtcctgcttt cgcacctgct cgacttgtcg
     1201 gtctcgcagt taagctacct tttgccattg cactatcagt ccgatttccg accggaccta
     1261 ggtaaccttc gaactcctcc gttacgcttt gggaggagac cgccccagtc aaactgccta
     1321 ccatgcacgg tccccgaccc ggatgacggg tctgggttag aacctcaaag acaccagggt
     1381 ggtatttcaa ggacggctcc gcagagactg gcgtctctgc ttctaagcct cccacctatc
     1441 ctacacaagt gacttcaaag tccaatgcaa agctacagta aaggttcacg gggtctttcc
     1501 gtctagcagc gggtagattg catcttcaca accacttcaa cttcgctgag tctcaggagg
     1561 agacagtgtg gccatcgtta cgccattcgt gcgggtcgga acttacccga caaggaattt
     1621 cgctacctta ggaccgttat agttacggcc gccgtttact ggggcttcga tccgatgctc
     1681 tcacatcttc aattaacctt ccagcaccgg gcaggcgtca caccctatac gtccactttc
     1741 gtgttagcag agtgctgtgt ttttaataaa cagtcgcagc cacctattct ctgcgaccct
     1801 ccggggctta cggagcaagt ccttaacctt agagggcata ccttctcccg aagttacggt
     1861 atcaatttgc cgagttcctt ctcctgagtt ctctcaagcg ccttagaatt ctcatcctgc
     1921 ccacctgtgt cggtttgcgg tacggttcga ttcaaactga agcttagtgg cttttcctgg
     1981 aagcgtggta tcggttgctt cgtgtccgta gacactcgtc gtcacttctc ggtgttaaga
     2041 agacccggat ttgcctaagt cttccaccta ccggcttaaa caagctattc caacagcttg
     2101 ccaacctaac cttctccgtc cccacatcgc atttgaatca agtacaggaa tattaacctg
     2161 tttcccatcg actacgcatt tctgcctcgc cttaggggcc gactcaccct acgccgatga
     2221 acgttgcgca ggaaaccttg ggctttcggc gagcgggctt ttcacccgct ttatcgctac
     2281 tcatgtcaac attcgcactt ctgatacctc cagcacactt tacaatgcac cttcatcggc
     2341 ctacagaacg ctcccctacc atgccgataa accggcatcc gcagcttcgg ttatagattt
     2401 gagccccgtt acatcttccg cgcaggacga ctcgaccagt gagctattac gctttcttta
     2461 aatgatggct gcttctaagc caacatcctg gctgtctggg ccttcccact tcgtttacca
     2521 cttaatctat cattggggac cttagctggc ggtctgggtt gtttccctct tgacaacgga
     2581 cgttagcacc cgctgtctgt ctcccgagga accacttgat ggtattctga gtttgccatg
     2641 ggttggtaag ttgcaataac cccctagcca taacagtgct ttacccccat cagtgtcttg
     2701 ctcgaggcac tacctaaata gttttcgggg agaaccagct atctccgagt ttgtttagcc
     2761 tttcacccct atccacagct catccccgca ttttgcaaca tgcgtgggtt cggtcctcca
     2821 gtacctgtta cggcaccttc aacctggcca tggatagatc actcggtttc gggtctacac
     2881 ccagcaactc atcgccctat taagactcgg tttccctacg cctcccctat tcggttaagc
     2941 tcgctactga atgtaagtcg ttgacccatt atacaaaagg tacgcagtca cacctctagg
     3001 gcgctcccac tgtttgtatg catcaggttt caggttctgt ttcactcccc tcccggggtt
     3061 cttttcgcct ttccctcacg gtactggttc actatcggtc gatgatgagt atttagcctt
     3121 ggaggatggt ccccccatat tcagacagga tttcacgtgt cccgccctac ttttcgtacg
     3181 cttagtaccg ctgttgagat ttcgaatacg ggactgtcac ccactatggt caagcttccc
     3241 agcttgttct tctatctcga cagttattac gtacaggctc ctccgcgttc gctcgccact
     3301 acttgcggaa tctcggttga tttcttttcc tccgggtact tagatggttc agttctccgg
     3361 gttcgcttct ctaagtctat gtattcaact taggatactg cacagaatgc agtgggtttc
     3421 cccattcgga catcgcggaa tcattgcttt attgccggct cccccgcgct tttcgcaggc
     3481 ttacacgtcc ttcgtcgcct atcatcgcca aggcatccgc ctgatgcact tattcacttg
     3541 actctatcat ttcaagaact tctttgactt tgcctaacat tccgttgact agaacatcag
     3601 acttgaattt cctactttga taaagcttac tgctttgttg tgtcttaatc ctgccttttg
     3661 tgtttcagga ttaagtcgat acaatcatca cccaaatact gtgtttgttt tcttttctct
     3721 tgtgagcgat tttttatcct ttgcaaagaa taaaaaatca aaacaaacgc tttgtctttg
     3781 tttgttgatt tcggctttcc aatttgttaa agatcgatgc gttcgatatt gctatctact
     3841 gtgcaaatca aaacgagctg attattatat cagcattttg ttcttggtca agtgtgatgt
     3901 cgccctgaat ggattctgtt ccattcttcc gttttgattt gtacagtatt ggtggaggca
     3961 aacgggatcg aaccgatgac cccctgcttg caaagcaggt gctctaccaa ctgagctatg
     4021 cccccgttct tggtgggtct gggaggactt gaacctccga ccccacgctt atcaagcgtg
     4081 tgctctaacc agctgagcta caaacccgga ttctcttctt aagcgaatct tgccttcact
     4141 caagcttctt ccgcatcttt tcagtttacc gataagtgtg aatgcctaaa gcctcttctt
     4201 tctctagaaa ggaggtgatc cagccgcagg ttcccctacg gctaccttgt tacgacttca
     4261 ccccagtcat gaagcatacc gtggtaagcg gactccttgc ggttacccta cctacttctg
     4321 gtatccccca ctcccatggt gtgacgggcg gtgtgtacaa gacccgggaa cgtattcacc
     4381 gcagtatgct gacctgcgat tactagcgat tccgacttca tgcactcgag ttgcagagtg
     4441 caatccggac tacgatcggt tttgtgagat tggctccgcc tcgcggcttg gctaccctct
     4501 gtaccgacca ttgtatgacg tgtgaagccc tggtcataag ggccatgagg acttgacgtc
     4561 atccccacct tcctccggct tgtcaccggc agtctcatta gagtgcccaa ctgaatgatg
     4621 gcaactaatg acaagggttg cgctcgttgc gggacttaac ccaacatctc acgacacgag
     4681 ctgacgacag ccatgcagca cctgtgttac ggctcccgaa ggcactcctc cgtctctgga
     4741 ggattccgta catgtcaaga ccaggtaagg ttcttcgcgt tgcatcgaat taatccacat
     4801 catccaccgc ttgtgcgggt ccccgtcaat tcctttgagt tttaatcttg cgaccgtact
     4861 ccccaggcgg tcaatttcac gcgttagcta cgctactaag caatcaagtt gcccaacagc
     4921 taattgacat cgtttagggc gtggactacc agggtatcta atcctgtttg ctacccacgc
     4981 tttcgggcat gaacgtcagt gttgtcccag gaggctgcct tcgccatcgg tattcctcca
     5041 catctctacg catttcactg ctacacgtgg aattctacct ccctctgaca cactcgagtc
     5101 acccagttca gaacgcagtt cccgggttga gcccggggat ttcacatcct gcttaagtaa
     5161 ccgtctgcgc ccgctttacg cccagtaatt ccgattaacg ctcgcaccct acgtattacc
     5221 gcggctgctg gcacgtagtt agccggtgct tattcttcag gtaccgtcat cagccgctga
     5281 tattagcaac agccttttct tccctgacaa aagtccttta caacccgaag gccttcttca
     5341 gacacgcggc atggctggat caggcttgcg cccattgtcc aaaattcccc actgctgcct
     5401 cccgtaggag tctgggccgt gtctcagtcc cagtgtggcg gatcatcctc tcagacccgc
     5461 tactgatcgt cgccttggta ggcctttacc ccaccaacta gctaatcaga tatcggccgc
     5521 tcgaatagcg caaggcccga aagtcccctg ctttctctct caagacgtat gcggtattag
     5581 ctgatctttc gatcagttat cccccactac tcggtacgtt ccgatatgtt actcacccgt
     5641 tcgccactcg ccacccgaga agcaagcttc tctgtgctgc cgtccgactt gcatgtgtaa
     5701 agcatgccgc cagcgttcaa tctgagccag gatcaaactc ttatgttcaa tctctaactt
     5761 tttaacttct ggtctgcttc aaagaaacca acaggacaat gttcaaaaca ttatcttgtc
     5821 tgtctttcaa acagtgtgag gctcaaggca ctcacactta tcggtaatct gttttgttaa
     5881 agagcgtttg aattataaag tatttcttcc gcctgtcaag atatctctcg atatccccaa
     5941 cattctgtgc tatactt
//
LOCUS       DAXIFD010000121         5930 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.121, whole genome shotgun sequence.
ACCESSION   DAXIFD010000121 DAXIFD010000000
VERSION     DAXIFD010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5930
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.121"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            55..1593
                     /gene="murJ"
                     /locus_tag="ACFOCN_001583"
     CDS             55..1593
                     /gene="murJ"
                     /locus_tag="ACFOCN_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HFC6970701.1"
                     /translation="MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVA
                     FKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALG
                     ILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIP
                     AFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPK
                     LNFKDAAVNRVMKQMAPAILGVSVAQISLVINTIFASYLQSGSVSWMYYADRMMELPS
                     GVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVA
                     TLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLASGFYARQNIKTPVKIAIFTLI
                     CTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFYLLRRHGIYQPGKGWAAFLAKMLL
                     SLAVMGGGLWAAQACLPFEWVRAGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHFK
                     RVES"
     gene            1726..2682
                     /locus_tag="ACFOCN_001584"
     CDS             1726..2682
                     /locus_tag="ACFOCN_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HFC6970702.1"
                     /translation="MILTPPDTPFFLRNGNADTIAAKFLQRPAPAYRRELLPDSTGKT
                     KVAYDFSDGISPDAPLVVLFHGLEGSSGSHYAVELMLAVRDRGWNGAVVHFRSCGGIA
                     NTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGERGENALPQAAA
                     VISAPVDAEAAGRRFDSGITRLLYTRYFLRTLIPKARSLHGFQTAFAAGCKTLGEFDD
                     RFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAANDPFLPPEALPTPDEVSEAV
                     TLFQPAHGGHAGFVGSTGGRLHLQWLPQTVLSYFDSFRTNRR"
     gene            2733..3515
                     /gene="trpC"
                     /locus_tag="ACFOCN_001585"
     CDS             2733..3515
                     /gene="trpC"
                     /locus_tag="ACFOCN_001585"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HFC6970703.1"
                     /translation="MTDILNKILTAKAQEVAAQKAAVNAEHIRALAAEAAPVRSFIGS
                     IRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQG
                     SPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVA
                     HELGMTVLLELHDESELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVV
                     TESGITGKADVEFMQSRGVHTFLIGETFMRADNIEAEVGKLF"
     gene            3581..5881
                     /gene="recQ"
                     /locus_tag="ACFOCN_001586"
     CDS             3581..5881
                     /gene="recQ"
                     /locus_tag="ACFOCN_001586"
                     /EC_number="5.6.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HFC6970704.1"
                     /translation="MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGGSLTVLMPTGG
                     GKSLCYQIPALMREGVAVVVSPLIALMNDQVASLHVAGIEAAAVNSGTSADEAREIAD
                     KLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGM
                     LAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFISSFDRPNIYYQVIEKNNGKK
                     QLLEFIRKEMAGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRF
                     THEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCY
                     GLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLSVCETAACRRVLLLKHFGEESEPCG
                     HCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNLLRGKSDDWIRGNRHEQLS
                     TFGIGAELSDKEWRSVIRQCISLGYLTVNIARYQALQLTEAAKKVLKGETEVMLRPLK
                     RGKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMP
                     QNLNGLHDIYGLGEAKTERFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWR
                     YEQARAENCALHAVLSDESLADMLADTPETETDLEGVHGLGSVRAAKYGRDILAVCRP
                     FSDGIDETAKHKRRLMRALIQWCNETAKHEQSEPYRILSKAALRAIAAKQPEGLAELA
                     AVYGVGEEKAARYGAAVLAVLERNAV"
BASE COUNT         1293 a         1762 c         1619 g         1256 t
ORIGIN      
        1 aaagtctgat cctgccgccc taaagggcgg ggtttcaacc gaaaaggaaa tacgatgaat
       61 atgctgggag ctttggcaaa agtcggcagc ctgacgatgg tgtcgcgcgt tttgggattt
      121 gtgcgcgata cggtcattgc gcgcgcattc ggcgcgggca tggcgacgga tgcgtttttt
      181 gtcgcgttca aactgcccaa cctgcttcgc cgcgtgtttg cggagggggc gtttgcccaa
      241 gcgtttgtgc cgattttggc ggaatataag gaaacgcgtt ctaaagaggc gacggaggct
      301 tttatccgcc atgtggcggg gatgctgtcg tttgtgctgg tcatcgttac cgcgctgggc
      361 atacttgccg cgccttgggt gatttatgtt tccgcacccg gttttgccaa agatgccgac
      421 aaatttcagc tctccatcga tttgctgcgg attacgttcc cctatatctt attgatttca
      481 ctttcctctt ttgtcggctc ggtactcaat tcctatcata aattcagcat tccggcgttt
      541 acgcccacgt ttctgaacgt gtcgtttatc gtattcgcgc tgtttttcgt gccatatttc
      601 gatcctcccg ttaccgcact ggcatgggcg gtttttgtcg gcggcatttt acaactcggc
      661 ttccaactgc cctggctggc gaaactgggt tttttgaaac tgcccaaact gaatttcaaa
      721 gatgcggcgg tcaaccgcgt catgaaacaa atggcacctg cgattttggg cgtgagcgtg
      781 gcgcagattt ctttggtgat caacacgatt ttcgcgtctt atctgcaatc gggcagcgtt
      841 tcatggatgt attacgccga ccgcatgatg gagctgccca gcggcgtgct gggggcggca
      901 ctcggtacga ttttgctgcc gactttgtcc aaacactcgg caaaccaaga tacggaacag
      961 ttttccgccc tgctcgactg gggtttgcgc ctgtgtatgc tgctgacgct gccggcggcg
     1021 gtcggactgg cggtgttgtc gttcccgctg gtggcaacct tgttcatgta ccgcgaattc
     1081 acgctgtttg acgcgcagat gacgcaacat gcgctgattg cctattcttt cggtttaatc
     1141 ggtttgatca tgattaaagt gttggcatcc ggcttttatg cgcggcaaaa catcaaaacg
     1201 cccgtcaaaa tcgccatctt cacgctcatc tgcacgcagt tgatgaacct tgcctttatc
     1261 ggcccactga aacacgtcgg actttcgctt gccatcggtc tgggcgcgtg tatcaatgcc
     1321 ggattgttgt tttacctgtt gcgcagacac ggtatttacc aacctggcaa gggttgggcg
     1381 gcgttcttag caaaaatgct gctctcgctc gccgtaatgg gcggcggact gtgggcggcg
     1441 caggcttgcc tgccgtttga atgggtacgc gccggcggaa tgcggaaagc ggggcagctc
     1501 tgcatcctga ttgccgtcgg cggcggactg tatttcgcat ctctggcggc tttgggcttc
     1561 cgtccgcgcc atttcaaacg ggtggaaagc tgaccgatgc cgatatcctt tttcggaaaa
     1621 cgctttttcc gcgcctatat tcgggcgcgc atcccccacg tccgcaccag ccggacgggc
     1681 tgccgcatca tcaatgccgt ctgaaaacaa gaaaaccgat accttatgat tttaacaccg
     1741 ccggacacgc cctttttcct ccgcaacggc aatgccgaca cgattgccgc caaattcctg
     1801 caacgccccg cacctgcata ccgccgcgag ctgcttccag acagcacggg taaaaccaaa
     1861 gtcgcctacg acttttcaga cggcatttcg cccgacgcac cgctggtcgt gctgtttcac
     1921 ggtttggaag gaagcagtgg cagccattac gcggtcgaac tgatgctcgc ggtacgcgat
     1981 cgcggttgga acggcgcagt cgtccatttc cgcagctgcg gcggcattgc caacaccgct
     2041 ccggtgttct accacttggg cgataccgcc gaaatcgcct ttactttgga cacgcttgcc
     2101 gcgcgttacc gtgaaatata cgccgtcggc gtatcgctgg gcggcaacgc gctggcaaaa
     2161 tatttgggcg aacggggcga aaacgcgctg ccgcaagccg ctgccgtcat ctccgcaccc
     2221 gtcgatgcag aggcggcagg cagacgcttc gacagcggca tcacgcggct gctctacacg
     2281 cgctacttcc tccgcaccct gatacccaaa gcacggtcgc tccacggttt tcagacggca
     2341 tttgccgcag ggtgcaaaac actgggcgag tttgacgacc gcttcaccgc accgctgcac
     2401 ggctttgccg accggcacga ctactaccgc caaacttcct gcaaaccgct gctcaaacac
     2461 gttgccaaac cgctgctcct gctcaatgcc gccaacgacc ccttcctgcc gcccgaagcg
     2521 ctgccgacac cggacgaagt gtccgaagcc gttaccctgt tccagccggc acacggcgga
     2581 cacgccggct ttgtcggcag caccggcggc aggctgcacc tgcaatggct gccgcagacc
     2641 gtcctgtcct atttcgacag cttccgcaca aacaggcggt aacggtttga tgctaatatt
     2701 ccccctttcc ccggacaaat acggaacacg acatgaccga catcctcaat aaaatcctta
     2761 ccgccaaggc acaggaagtt gccgctcaaa aagccgccgt caacgccgaa cacatccgcg
     2821 cacttgccgc agaagccgcg cccgtccgca gcttcatcgg ttcgatacgc ggcaaacacc
     2881 gcctaaacct gcccgccgtc attgccgaaa tcaaaaaggc aagcccgagc aaaggcctga
     2941 tccgtccgga cttccgaccg gccgagattg cacgcgccta tgaaaacgcc ggggcggcgt
     3001 gtttgtccgt actgaccgac gaaccctatt tccaaggttc gcccgaatac ctcaaacagg
     3061 cgcgcgaagc cgtatcgctg cccgtgctgc gcaaagactt catcatcgac gaatatcagg
     3121 tttatcaggc gcgcgcatgg ggggcggatg ccgtcctgct gattgccgca gcactggaac
     3181 aggaacaatt ggaacgcttt gaagcggtgg cgcacgaatt gggcatgacc gtcctgctcg
     3241 agctgcacga tgaaagcgaa ttggaaaaat gccgcaacct gaccacgccg ttgtggggtg
     3301 taaacaaccg caacctgagg acttttgaag tctccctcga ccaaaccctg tcgctgctgc
     3361 ccgcgctgga aggcaaaacc gtcgttaccg aaagcggcat tacaggcaag gcggatgtgg
     3421 aatttatgca atcgcgcggc gtgcatacct tcctgatcgg cgaaacgttt atgcgtgccg
     3481 acaatattga ggcggaagta ggcaaactct tctaaatccc gatttcagac ggcattccct
     3541 ttctttaacc gacacaccct ttaccggaca cggaaccatc atgcaccgac cgaccgccaa
     3601 acagattctg cacgaagtat ttggttatcc cgaatttcgc ggcaggcagg aggctgtcat
     3661 caatactttg gcaggcggcg ggagtttgac ggtgctgatg ccgacgggcg ggggcaagtc
     3721 tttgtgttac cagattcccg cgctgatgcg cgaaggcgtg gcggttgtcg tatcgccgct
     3781 gattgcgctg atgaacgacc aagtggccag cctgcatgtg gccgggattg aagcagcggc
     3841 agtcaacagc ggcacatcgg cagatgaggc gcgcgagatt gccgacaagc ttgcccaagg
     3901 ccgtctgaaa ctgctttatg tcgcgccgga acgcttggtt accgatcgct ttttgcgttt
     3961 tctcgaccaa caaaccgtca gcctgtttgc cattgatgag gcgcattgcg tcagccagtg
     4021 gggacacgat ttccgccccg aataccaaca gctcggcatg cttgccgaac gctatccgaa
     4081 cgtcccgcgc atcgccctga ccgccaccgc cgatgccgcc acgcgcgccg acatcaagca
     4141 ttatctgcac ttggacgatg cgcccgaatt tatttccagc ttcgaccgcc cgaatattta
     4201 ttatcaggtt atcgaaaaaa acaacggcaa aaaacaactg cttgaattta tccgcaaaga
     4261 aatggcgggg caaagcggca ttgtgtattg cctaagccgc aaaaaggttg aagatgtggc
     4321 gcagtttttg cgtgaaaacg gattaaacgc gattccgtat catgctggtt tgagcatgga
     4381 cgtgcgcgag gaaaaccaac gccgctttac gcatgaagac aatattatcg tggtggcgac
     4441 cgtggcgttc ggcatgggca tagacaaacc cgacgtgcgc tttgtcgccc atctcgatat
     4501 gccccagagt gtcgaacatt tctatcagga atcggggcgt gccggcaggg acgggctgcc
     4561 tgccgcgagc tggctgtgtt acggcttgaa cgattgggtg ttgctgcgcg aacggattgc
     4621 cgaaggcaac agcgatgagg tgcaaaagca aatcgaaatg caaaaactcg atgccatgct
     4681 ttccgtctgc gaaaccgccg cctgccgccg cgtactgttg ctcaaacatt ttggcgaaga
     4741 atccgaaccc tgcggccatt gcgacaactg cctgcatccg cctgtgcggt ttgacggcac
     4801 ggtgttggta caaaaattac tcagctgcgt gtaccgcgcc ggacaacgtt ttgccgccgg
     4861 ttacatcacc aaccttttgc gcggtaaaag cgacgattgg atacgcggca accggcacga
     4921 acaactgtct accttcggca tcggtgcgga gttgtccgac aaagaatggc gcagcgtcat
     4981 ccgccagtgc atcagcctcg gctacctcac cgtcaacatt gcccgatatc aggcattgca
     5041 actgaccgaa gccgccaaaa aagtcctcaa aggcgaaacc gaagtgatgc tgcgtccgct
     5101 caagcgcggc aagcccgccg cccgcaccct caaagacaac tggctgcgta ccgaacgcga
     5161 agaacgcctg tggcaggcat tgcgcgtttg gcgtatgaaa caggcagaag ccgaaggcat
     5221 ccccgcctat atgattttcg gcgacaaaac cctgcgcgac cttgtcgaaa aaatgccgca
     5281 aaacctcaac gggctgcacg acatctacgg cttgggcgaa gccaaaaccg aacgtttcgg
     5341 acacggcata ctcgaagtct gccgcaacgc cgccggcttc agccgcgacg cggtcatccg
     5401 tccgcaaacc gaacgcgaac aacaactgcg tcaaaaactc gaggcctggc ggtatgaaca
     5461 ggcaagggcg gaaaactgcg ccctgcatgc cgtcctctcc gacgaaagcc ttgccgatat
     5521 gcttgccgat acgcccgaaa ccgaaaccga cctcgaaggc gtacacggct tgggcagcgt
     5581 acgcgccgcc aaatacggac gggacatcct cgccgtctgc cgtccgtttt cagacggcat
     5641 cgatgaaacc gccaaacaca aacgccgcct gatgcgcgcc ctgatccaat ggtgcaacga
     5701 aacggcaaaa cacgaacagt ccgaacccta ccgcattctc agcaaagccg ccctacgcgc
     5761 cattgccgcc aaacagccgg aaggtttggc ggagcttgcc gccgtatatg gcgtaggcga
     5821 agaaaaagcc gcacgttacg gtgcggcggt gttggcggta ttggaacgaa atgccgtctg
     5881 aaaaccgtta ccaagtttca gacggcattg cctctattta aaaattcctg
//
LOCUS       DAXIFD010000122         5930 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.122, whole genome shotgun sequence.
ACCESSION   DAXIFD010000122 DAXIFD010000000
VERSION     DAXIFD010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5930
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.122"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(49..636)
                     /locus_tag="ACFOCN_001587"
     CDS             complement(49..636)
                     /locus_tag="ACFOCN_001587"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HFC6970705.1"
                     /translation="MEHKLPQLPYEPDALSPHLSKETLEFHYGKHHQTYITNLNNQIK
                     GTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLGFTPKGQGKPVGELAAAIDAKWG
                     SFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
                     HAYYIDYRNSRPNYLKGFWEIVNWDEVAKRFAALS"
     gene            798..2204
                     /gene="dnaB"
                     /locus_tag="ACFOCN_001588"
     CDS             798..2204
                     /gene="dnaB"
                     /locus_tag="ACFOCN_001588"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HFC6970706.1"
                     /translation="MNDYTAMPSEDREVGALSLPPHSMEAEQSVLGGLMLENPAWDRI
                     ADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQEDLQRNEELEAAGGFEYLITL
                     AQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQ
                     IAESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPG
                     DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQS
                     VLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLI
                     VIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPM
                     MSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECIIGKHRNGPVGKIFLTWTGQ
                     FTKFDNAAYIPEEAKIED"
     gene            2513..3190
                     /locus_tag="ACFOCN_001589"
     CDS             2513..3190
                     /locus_tag="ACFOCN_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HFC6970707.1"
                     /translation="MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASH
                     AERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPNNKCDSSKKGQGMLAFGDKNGNK
                     EYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
                     NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTR
                     RTMCQYK"
     gene            3214..3828
                     /gene="pilV"
                     /locus_tag="ACFOCN_001590"
     CDS             3214..3828
                     /gene="pilV"
                     /locus_tag="ACFOCN_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus modification protein PilV"
                     /protein_id="HFC6970708.1"
                     /translation="MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVA
                     SVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKNYNLYMGNHHTLSAVDGDFQVDA
                     IKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGVAPTLSAGSTFSSNCDASA
                     NGDTLIKVLWVNDSAGDSDITRTNLETNGDNIVYTYQARVGGRE"
     gene            3825..4763
                     /locus_tag="ACFOCN_001591"
     CDS             3825..4763
                     /locus_tag="ACFOCN_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilW family protein"
                     /protein_id="HFC6970709.1"
                     /translation="MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFT
                     SRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFGCFNMSEHPATDVVSDVAQKNRS
                     FSLKRNGIDKLIPIAESSNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCSKIAK
                     LGKKISTLQEAKSELQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGK
                     WGNPQLLAKKVRRMDVRYIYVSGCPEDDDAGKEETFKYTDKFDKSKNAVTPAGVEVLL
                     SSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL"
     gene            4742..5341
                     /locus_tag="ACFOCN_001592"
     CDS             4742..5341
                     /locus_tag="ACFOCN_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX N-terminal domain-containing pilus assembly
                     protein"
                     /protein_id="HFC6970710.1"
                     /translation="MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNT
                     EQRISTNESDRKLALSLAEAALREGELQVLDLEYDTDSKVTFSENCGKGLCTAVNVRT
                     NTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
                     IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE"
     gene            5346..5819
                     /locus_tag="ACFOCN_001593"
     CDS             5346..5819
                     /locus_tag="ACFOCN_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX family type IV pilin"
                     /protein_id="HFC6970711.1"
                     /translation="MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTE
                     MVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKMNPKIAEKYNVSVHFVNKEKPRA
                     YSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK"
BASE COUNT         1615 a         1321 c         1520 g         1474 t
ORIGIN      
        1 tcaataccgc aaaaatctac ccgaaatgat atagcggatt aacaaaaatc aggacaaggc
       61 ggcaaaacgt ttggcaacct cgtcccagtt gacgatttcc caaaaacctt tcaggtagtt
      121 ggggcggctg ttgcggtagt cgatgtagta ggcgtgttcc cacacgtcgc aggtcagcag
      181 cggcgtgttt tcagtggtca gcggcgtagc ggcgttggaa gtggaaacca aatccaatcc
      241 gccggcaggg gtttttacca gccacgccca accggagccg aaagtaccgg ccgcgcaggc
      301 attgaacgct tcttggaatt tctcgaagct gccccatttc gcgtcgatgg cggcggccag
      361 ttcgccgaca ggtttgcctt gacctttggg cgtgaaaccc agccagtaga aggtgtggtt
      421 ccaagtttgt gccgcgttgt tgaacacgcc gcccgaagat tttttcacaa tctcttccaa
      481 aggtaggttt tcaaattcgg tacctttgat ttgattgttc aggttggtga tgtaggtttg
      541 atggtgtttg ccgtagtgga attccaaagt ctctttgctc agatgcgggg acaatgcgtc
      601 cggttcataa ggcagttgcg gcagcttatg ttccattttg tgctcctaat attgttttaa
      661 atgttgtatt ttggcagtgt gctgcaaata gctcagcagc gcacatattc tacctgtttt
      721 gaggtacgga aaccaattaa acctgcttta cgctataata gaagattgca atttcggcac
      781 gacagatagg atgtaccatg aacgattaca cagccatgcc gtctgaagac cgtgaggtcg
      841 gcgcattgtc gctgcctcca cattcgatgg aggcggaaca atccgttttg ggcggtttga
      901 tgctggaaaa tccggcttgg gacaggattg ccgatgtggt ttcgggagag gatttctacc
      961 gccacgaaca ccgcctgatt ttccgatcca ttgccaaatt aatcaatgag agccgtcccg
     1021 ccgatgtgat tacggttcag gaagatttgc agcggaacga agaattggaa gcggcaggcg
     1081 gatttgaata tctgattacg ctggcgcaaa ataccccgtc tgccgccaac atccgccgct
     1141 atgccgaaat cgtgcgcgag cgttccatca tgcgccaact cgccgaagtg gggacggaaa
     1201 tcgcccgcag cgcctacaat ccgcaaggca gggatgcagg tcagcttttg gatgaggcgg
     1261 aaaacaaagt attccaaatt gcagaaagca cggccaaatc caagcagggc tttttggaga
     1321 tgcccgattt gctgaaagaa gtcgtacagc gcatcgatat gctctactcg cgcgacaatc
     1381 ccgatgaagt taccggcgtg ccgacagggt ttatcgacct cgacaaaaaa acctcgggtc
     1441 tgcaacccgg cgacctgatt atcgtcgccg gtcgtccttc tatgggtaag accgcctttt
     1501 ccatcaatat tgccgaacac gttgccgtag aaggcaagct gcccgttgcc gtcttctcaa
     1561 tggagatggg cggggcgcaa ctggtcatgc gtatgctcgg ctcggtcgga cgcttggatc
     1621 aaagcgtttt gaaaaccggc aggctcgaag acgaacactg gggtcgcctg aacgaagcag
     1681 tcgtcaaact ctccgacgcg cccgtgtaca tcgacgagac cccgggtctg accgcgctcg
     1741 aactgcgcgc ccgtgcccgc cgtctcgccc gtcaatttaa caataagctg ggattaatcg
     1801 tcatcgacta cctgcaactg atggcgggat ccggccgttc cgacaaccga gcttcagagc
     1861 tgggcgaaat ttcacgttcg ctcaaagcgt tggcgaaaga attgcaagtc cccatcatcg
     1921 ccctgtcgca actgagccgc acggtcgaat cgcgtaccga caaacgcccg atgatgtccg
     1981 accttcgcga atccggtgct atcgagcagg atgccgacct gattatgttt atgtaccgcg
     2041 acgaatacta caaccaagac tcgcccatga aaggccttgc cgaatgtatc atcggcaaac
     2101 accgcaacgg tcccgtcggt aaaatcttcc tcacatggac gggacaattc accaaattcg
     2161 acaatgctgc ctatattccc gaggaggcaa agatagagga ttaaatggct atataaaaat
     2221 ttattaggcg aaatcaggca aaatcgttta aaatcatgct gagagattgc cctaaaaaat
     2281 aaaacgcggt cttgaggcat ttttgcattc agcccgcata taattgaaaa tatagtggat
     2341 taacaaaaat caggacaagg caacgaagcc gcagaccgta caaatagtac ggaaccgatt
     2401 cacttggtgc ttgagcacct tagagaatcg ttctctttga gctaaggcga ggcaacgccg
     2461 tactggtttg aatttaatcc actatacatt accagttaac gttctattgc ttatgtgtac
     2521 acgaaaacaa caaggtttca cgctaacaga gctgctcatc gtgatggtca ttgcagccat
     2581 tatggcgatg atagccctcc ccaatatgag ccaatggatt gcatcccgcc gcattgccag
     2641 tcacgcggag cggattgcca accttttgcg tttctccagg ggcgaagccg tccggctcaa
     2701 tctccctgtc tatatctgtc ctgttcaagt taaaaaagac ggtacgccca acaataaatg
     2761 tgactccagc aagaaggggc agggaatgtt ggctttcggc gacaaaaacg gcaataagga
     2821 atatgacaat gatacggcgg atgttcttct ccgcagtgtg gtattgaatg atgatatcaa
     2881 tgataagcgg attaattatg ccttcaacca tatcgctttc ggtcagactc agccgaccgc
     2941 tgaccgtgta gtttggacat tcaatcaaaa cgggacgttc ggttattcta ccaatcagga
     3001 tctcacgaat acttccaaat ttgtttactc cgacggttat atccaaatcg tgctgacaga
     3061 tgcgagagca gtttcagatg ccgataagaa attccgttcg gcggtggttt tgattgacag
     3121 cagcggcagg gtcgaagttt gccctagggg tgatcggcgt actcggcgta ctatgtgcca
     3181 gtataaataa cagtttcagt tttaaaaatg aatatgaaga ataatgattg cttccgcctg
     3241 aaagattccc agtccggtat ggcgctgata gaagtcttgg ttgctatgct cgttctgacc
     3301 atcggtattt tggcgttact gtctgtgcag ttgcggacag tcgcttccgt cagggaggcg
     3361 gagacacaaa ccatcgtcag ccaaatcacg caaaacctga tggagggaat gttgatgaat
     3421 ccgaccattg attcggacag caacaagaaa aactataatc tttacatggg aaaccatcat
     3481 acactatcag ctgtggatgg cgattttcag gttgatgcca taaaaactaa gacgcagttg
     3541 gcagaggcac aattgaagag atttagttat gagctgaaaa atgccttgcc ggatgcggca
     3601 gccatccatt acgccgtctg caaggattcg tcgggtgttg cgccgacatt gtccgccggc
     3661 agtacttttt cttcaaattg cgatgctagt gcaaatgggg atactttgat taaagtattg
     3721 tgggtaaatg attcggcagg ggattcggat atcacccgta cgaatcttga gacgaacggc
     3781 gacaatatcg tatataccta tcaggcaagg gtcggaggtc gggaatgaga cgtaaaatgc
     3841 taaacgtacc aaaaggcagt tatgatggta tgaagggttt taccattatt gaatttttgg
     3901 ttgcgggcat gctcagtatg attgtcctga tggcggtcgg atcgagttac tttacatctc
     3961 ggaaattaaa tgatgcggca aacgagcgtc tttccgcaca acaggatttg cggaatgcgg
     4021 caacattgat tgtccgcgat gcaagaatgg cagggggctt cggttgtttc aatatgtccg
     4081 agcatcctgc aactgatgtt gtttccgatg tggcgcaaaa aaaccgttct ttttccttaa
     4141 aaaggaacgg tatagataaa cttattccca tagcggaatc ttcaaatatc ggatatccgg
     4201 gttttaccca gcgccttaac gcattgattt tccaatacgg aatcgatgat gttaatgcaa
     4261 gcgccgatac taccgtcgtc agcagctgtt ccaaaatagc aaaactgggt aagaaaatat
     4321 ctaccttgca agaagcaaag agtgaattac agattactaa tgatgataaa caaaatggaa
     4381 atatcacccg tcaaaggcat gtggtcaatg cctatgcggt cggcaggatt gccggtgagg
     4441 aaggtttgtt ccgcttccaa ttggatgata agggcaagtg gggtaatcct cagttgctcg
     4501 cgaaaaaggt tagacgtatg gatgtgcggt atatctatgt ttccggctgt cctgaagatg
     4561 acgatgccgg caaagaggaa acattcaaat atacggataa attcgacaaa tccaaaaatg
     4621 ctgttacgcc cgccggggtg gaggttttat tgagtagcgg tactgatacc aagattgccg
     4681 cttcttcaga caatcatatt tatgcttacc gtatcgatgc gacaatacgc gggggaaatg
     4741 tatgcgcaaa cagaacactt tgacgggaat cccgacttct gacggacaga gggggttcgc
     4801 actgtttatc gtactgatgg tgatgatcgt cgtggcattt ttggttgtaa ctgccgcgca
     4861 gtcttacaat accgagcaga ggatcagtac caacgaatca gacaggaaat tggctttgtc
     4921 tttggccgag gcggctttgc gggaaggcga acttcaggtt ttggatttgg aatatgatac
     4981 ggacagtaag gttacattta gtgaaaactg tggaaaaggt ctgtgtaccg cagtgaatgt
     5041 gcggacaaat acaaataatg gtaatgaaga ggcttttgac aatatcgtgg tgcaaggcaa
     5101 gcccatcgtt gaggcggtga agcgtttttg ccctgcaaat tctaccgacc tgtgcattga
     5161 caagaaaggg atggaatata agaaaggcac gagaagcgtc agcaaaccac cacactatat
     5221 tatcgaatat ttgggcgtga agaacggaga aaatgtttat cgggttactg ccaaggcttg
     5281 gggtaagaat gccaataccg tggtcgtcct tcaatcttat gtaagcaata atgatgagta
     5341 ataaaatgga acaaaaaggg tttacattga ttgagatgat gatagtcgtc gcgatactcg
     5401 gcatcatcag cgtcattgcc ataccttctt atcaaagtta tattgaaaaa ggctatcagt
     5461 cccagcttta tacggagatg gtcggtatca acaatatttc caaacagttt attttgaaaa
     5521 atcccctgga cgataatcag accatcaaga gcaaactgga aatatttgtc tcaggctata
     5581 agatgaatcc gaaaattgcc gaaaaatata atgtttcggt gcattttgtc aataaggaaa
     5641 aaccaagggc atacagcttg gtcggcgttc caaagacggg gacgggttat actttgtcgg
     5701 tatggatgaa cagcgtgggc gacggataca aatgccgtga tgccgcttct gcccgagccc
     5761 atttggagac cttgtcctca gatgtcggct gtgaagcctt ctctaatcgt aaaaaatagg
     5821 gctgttttgc cgatgccgtc tgaagattaa ttttcagacg gcatttttat gggtatagtg
     5881 gattaacaaa aatcaggaca aggcgacgaa gccgaagaca gtacaaatag
//
LOCUS       DAXIFD010000123         5805 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.123, whole genome shotgun sequence.
ACCESSION   DAXIFD010000123 DAXIFD010000000
VERSION     DAXIFD010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5805
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.123"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(18..239)
                     /locus_tag="ACFOCN_001594"
                     /pseudo
     CDS             complement(18..239)
                     /locus_tag="ACFOCN_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="taurine catabolism dioxygenase TauD"
     gene            complement(238..345)
                     /locus_tag="ACFOCN_001595"
                     /pseudo
     CDS             complement(238..345)
                     /locus_tag="ACFOCN_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(391..1119)
                     /gene="pdxJ"
                     /locus_tag="ACFOCN_001596"
     CDS             complement(391..1119)
                     /gene="pdxJ"
                     /locus_tag="ACFOCN_001596"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HFC6970712.1"
                     /translation="MLLGVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLR
                     EDRRHIKDADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEITTEG
                     GLDVLAQQEKIAGFTKILTDAGIRVSLFIDADDRQIQAAYDVGAPVVELHTGAYADAR
                     SHAEQLKQFERLQNGAHFAGDLGLVVNAGHGLTIHNVTPIAQILAIRELNIGHSLIAQ
                     ALFLGLPEAVRQMKEAMFRARLLP"
     gene            complement(1143..1934)
                     /gene="recO"
                     /locus_tag="ACFOCN_001597"
     CDS             complement(1143..1934)
                     /gene="recO"
                     /locus_tag="ACFOCN_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HFC6970713.1"
                     /translation="MSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSAR
                     KRQSELRGVLVPFVPVSASWYGSQELKTLHRAEWIGGWPQPQGRALFSGLYVNELMLK
                     LTVREDPLPELYDALAEVMEAVCCKAAYIDDLRRFEWRLLNLLGVAPDLHADGTGGDI
                     LADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKIT
                     RLFIRHLLPEGLKSRQVLEQIRQFDRKETARETVPTSDGTASNAV"
     gene            complement(1968..3095)
                     /gene="pheA"
                     /locus_tag="ACFOCN_001598"
     CDS             complement(1968..3095)
                     /gene="pheA"
                     /locus_tag="ACFOCN_001598"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HFC6970714.1"
                     /translation="MLECTINYCSGEIMSQTIDELLLPHRNAIDTIDAEILRLLNERA
                     QHAHAIGELKGTGAVYRPEREVAVLRRIQDLNKGPLPDESVARLFREVMSECLAVERP
                     LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDNCFKQVETRQADYLVAPVENSTEG
                     SVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGR
                     HLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTR
                     FLVMGHHETGASGSDKTSLAVSAPNRAGAVASLLQPLTESGISMTKFESRPSKSVLWE
                     YLFFIDIEGHRRDAQIQTALERLGERASFVKVIGSYPTAVL"
     gene            complement(3134..4366)
                     /locus_tag="ACFOCN_001599"
     CDS             complement(3134..4366)
                     /locus_tag="ACFOCN_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HFC6970715.1"
                     /translation="MPSAHYPEMSEKLMAVLMAMLVTLMPFSIDAYLPAIPEMAQSLN
                     ADVHRIEQSLSLFMFGTAFGQVVGGSVSDIKGRKPVALTGLAVYCLAVAAIVFASSAE
                     QLLNLRVVQAFGAGMTVVIVGAMVRDYYSGRKAAQMFALIGIILMVVPLVAPMVGALL
                     QGLGGWQAIFVFLAAYSLVLLGLVQYFLPKPAVGGKIGRDVFGLVAGRFKRVLKTRAA
                     MGYLFFQAFSFGSMFAFLTESSFVYQQLYHVTPHQYAWAFALNIITMMFFNRITAWRL
                     KTGAHPQSILLWGIVVQFAANLSQLAAVLFFGLPPFWLLVACVMFSVGTQGLVGANTQ
                     ACFMSYFKEEGGSANAVLGVFQSLIGAGVGMAATFLHDGSATVMAATMTASTSCGIAL
                     LWLCSHRAWKENEQSEYL"
     gene            complement(4886..5740)
                     /locus_tag="ACFOCN_001600"
     CDS             complement(4886..5740)
                     /locus_tag="ACFOCN_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6970716.1"
                     /translation="MFYQILALIIWSSSFIAAKYVYGGIDPALMVGVRLLIAALPALP
                     ACRRHVGKIPREEWKPLLIVSFVNYVLTLLLQFVGLKYTSAASASVIVGLEPLLMVFV
                     GHFFFNDKARAYHWICGAAAFAGVALLMAGGAEEGGEVGWFGCLLVLLAGAGFCAAMR
                     PTQRLIARIGAPAFTSVSIAAASLMCLPFSLALAQSYTVDWSVGMVLSLLYLGVGCGW
                     YAYWLWNKGMSRVPANVSGLLISLEPVVGVLLAVLILGEHLSPVSALGVFVVIAATLV
                     AGRLSHQK"
BASE COUNT         1354 a         1686 c         1574 g         1191 t
ORIGIN      
        1 acataatcat cgcctcaata tttaatatcc caaaatatag atttaaaacc atcgcctttg
       61 tggtttgtca gcattcctaa ttgagataga aagtcaaata atttcttgtt tctccggctg
      121 ccatcaagat ggtttagatt aagacctcga acaatacaat acccaatact ctgtactgta
      181 ttgtgaattt cttctatcaa actattattg tttgcagata aaatatactt ttgattcata
      241 tagtgaatta aatttaaacc agtacggcgt tggcttgcct tgccgtacta tttgtactgt
      301 ctgcggcttc gccgccttgt cctgatttaa atttaatcca ctataacata tccctgtcgt
      361 gaaatgctgt ctgaaagggt ttgcctgccc ttacggcagc agccttgccc tgaacatcgc
      421 ctccttcatt tggcgcacgg cttcgggcag tccgaggaag agggcttggg caatcagcga
      481 atgcccgatg ttcagttcgc ggatggcgag gatttgggcg atgggggtaa cgttgtgtat
      541 ggtcagtccg tgtccggcgt tgacgaccaa gcccaaatcg ccggcaaaat gcgcgccgtt
      601 ttgcagacgc tcgaattgct tgagttgttc ggcgtggctg cgcgcgtcgg catacgcgcc
      661 tgtgtgcagc tcgacaacgg gcgcgccgac atcataggcg gcttggattt gcctgtcgtc
      721 ggcatcgata aagagagaga ctcggatgcc tgcgtcggtc aggattttgg tgaacccggc
      781 gattttttcc tgttgcgcca atacgtccaa gccgccttcg gtcgtgattt cctgacgttt
      841 ttcaggcacg atgcacacgt cttccggcat cactttaagc gcgttttcga gcatttcttc
      901 cgtcaacgcc atttcaaggt tcaggcgcgt gcggatggcg tttttgacgg caaacacatc
      961 cgcgtctttg atgtggcggc ggtcttcgcg caggtgcatg gtaatcaaat ccgcaccgtg
     1021 cgtttcggca accagtgccg cctccacggg gctgggataa gtcgtgccgc gcgcattgcg
     1081 gacggtagcg atgtggtcga tgttgacacc taaaagcata atctttcctt ttatttctgc
     1141 cttcagacgg catttgaagc cgtgccgtcc gaagtcggga cggtttcccg ggcggtttct
     1201 ttgcggtcaa actgccgtat ctgttccaac acctgccgcg atttcagccc ctcgggcaac
     1261 aggtggcgga taaaaagccg tgtgattttc aatgcctgtt gcaggctttc ggcggtgcgg
     1321 aaactgcctt cgcgcaaatc gatcaggctt tgcccttcga caattgcgcc ggcttcgtgc
     1381 gaaagcgcgt ctgcgtcctc gcatacgggc atgaccgcct cttcgggcat cagccggtag
     1441 gttttgtccg ccaaaatatc gccgcccgtg ccgtcggcgt gcaaatcggg ggcaacgccc
     1501 aacaggttca gcagccgcca ctcgaaacgg cgcaagtcgt cgatataagc ggctttgcag
     1561 cacaccgcct ccatcacttc cgccaacgcg tcgtataact cgggcaacgg atcttcgcgg
     1621 acggtcaact tcagcatcaa ctcgttcaca tacaatccgc tgaacaaagc cctaccctgc
     1681 ggctgcggcc acccgcctat ccattcggcg cgatgtaggg tcttcaactc ttgcgaacca
     1741 taccaagacg cactcaccgg cacaaacggc accaacacgc cgcgcaattc gctctgccgt
     1801 ttgcgcgcgc ttcttgccaa aagtgccaca cgcccgtaac ggcggctgaa cgcttcgacc
     1861 cgcaggctgc tttcgcgcca gggcgaggaa gccaacagga agacgggttc gtggttgact
     1921 cggtgttcgg acatcatgcc tgaaatgccg tctgaacgct gccgccgcta caaaacggcg
     1981 gtcgggtacg aaccgatgac tttgacgaac gaagcgcgtt cgcccaagcg ttccaatgcc
     2041 gtctgaatct gcgcgtcccg gcggtgtcct tcgatgtcga tgaagaacag gtattcccac
     2101 aaaacggatt tactcggacg gctctcaaac ttggtcatgg aaatacccga ctcagtcagc
     2161 ggttgcagca gcgaggcaac cgcgcctgcc cggttgggcg cggaaacggc cagcgaagtc
     2221 ttgtcgctgc cgcttgcacc ggtttcgtga tgtcccatca ccaagaagcg cgtggtgttg
     2281 ttcggttcgt cttcgatgca ctcggcaacc atatcgagtc cgtagatttc cgccgccgtg
     2341 cgtccggcga tggcggcaac cgtaccgtcg tccgattcgg caaccagcct tgcggcttcg
     2401 gcattgctgg acacggcaat ccgttcggcg ttgggcaggt gtctgcccaa ccagtcgttg
     2461 cactgcgcca acgcctgcgc gtgggaaaag actttggcaa tgccttcggt gctgccgttg
     2521 tttttacgca aaaggttgtg gtggatgcgc aaaacgactt cgccgcacgc ctgcaacgcg
     2581 gtaacggcaa gcaaatccaa cgtgcgcccg accgagcctt cggtcgagtt ttccacgggc
     2641 gcgaccagat aatccgcctg acgggtttca acctgcttga agcagttgtc tatggtcgga
     2701 cacgccatgg tgtgcgcggc gtgtccgaaa tgcttgatcg ccgcctgctg ggtaaacgtg
     2761 ccctgcggcc ccagataggc gatggtcagc gggcgttcga cggcgaggca ctcgctcatc
     2821 acttcccgaa acaggcgtgc taccgattcg tcgggcagcg ggcctttgtt caaatcctga
     2881 atgcggcgca acacggcgac ttcgcgttcg gggcggtaca ctgcgcccgt gcctttcagc
     2941 tcgccgatgg cgtgggcgtg ttgcgcacgt tcgttgagca ggcgcaggat ttcggcatcg
     3001 atggtgtcga tggcgttgcg gtggggaagg aggagttcgt cgatagtttg ggacataatt
     3061 tcgcctgaac agtaatttat cgtgcattct aacatcaaat gccgtctgaa acggtttcag
     3121 acggcatttt ccgttaaagg tattcgctct gttcgttttc cttccacgcc cggtgcgaac
     3181 acagccacag aagcgcaatg ccgcaagagg tggacgcggt catcgttgcc gccatcacgg
     3241 ttgccgaacc gtcgtgcaag aaggtcgccg ccatacccac ccccgcgccg attaaggact
     3301 ggaacacgcc caacacggcg ttcgcgctgc cgccctcttc tttgaaataa gacataaagc
     3361 atgcctgcgt gttcgcgccg accaagccct gcgtaccgac ggaaaacatc acgcacgcaa
     3421 ccagcagcca aaacgggggc aacccgaaaa acagcacggc ggcgagttgg gacaggttgg
     3481 cggcaaattg gacgacaatc ccccacagca ggatgctttg cggatgcgcg ccggttttga
     3541 gccgccacgc ggtaatacgg ttgaaaaaca tcatcgtgat gatgttgagc gcaaacgccc
     3601 aagcgtactg gtgcggcgta acgtggtaga gctgctggta cacgaaggaa gattcggtca
     3661 gaaaggcgaa catcgaaccg aagctgaatg cctgaaaaaa cagataaccc atcgcggcac
     3721 gggttttcaa tacgcgcttg aaccgccccg ccaccagccc gaacacgtcc ctgccgattt
     3781 tgccgccgac ggcgggcttg ggcaggaaat actgtaccaa accgagcagc accagcgaat
     3841 acgccgccag aaaaacaaaa atcgcctgcc agccacccaa gccctgcaac aatgcgccga
     3901 ccatgggtgc gaccagcggc acaaccatca aaatgatgcc gataagggca aacatctggg
     3961 cggctttgcg tccggaataa taatcgcgca ccattgcgcc gacgatgacc acagtcatgc
     4021 ccgcaccgaa tgcctgcacg acgcgcaggt tgaggagctg ttcggcactc gaagcaaata
     4081 cgatggcggc aacggcaagg cagtagacgg ccagtccggt cagcgcgacg ggtttgcgcc
     4141 ctttgatgtc ggacaccgaa ccgccgacca cctgtccgaa cgccgtgccg aacataaaca
     4201 aactcaggct ctgttcgatg cggtggacat ccgcgttcag cgactgcgcc atttcgggaa
     4261 tcgcgggcag gtaggcatcg atggaaaacg gcatcagcgt aaccagcatc gccatcaaaa
     4321 ccgccatcag tttttcgctc atttcaggat aatgggcaga aggcataaat tctcgtccga
     4381 ttcgcaaaca aaccgcccgg cggcggaaaa cacaatacgc ggaaacggaa aattttaaca
     4441 caccggcaca aacaggcggc aacaaaagcc ccggcaaaac cggacgaacc ggaacgatat
     4501 agtggattaa caaaaaccag tacagcgttg ccttgcctta gctcaaagag aacgattctc
     4561 taaggtgctt aagcacccag tgaatcggtt ccgtactatc tgtactgtct gcggcttcgt
     4621 cgtcttgtcc tgatttttgt taatccgcta taaaatcccg tcattcccgc gcaggcggga
     4681 atccggacat ccaacgctgc agcaatttgt cggaaataac cgaaactcaa aaaaccggat
     4741 gcccgcctgc gcgggaatga cgatgcaaag atggtcgtta tttcggataa atatccgtct
     4801 tttcgttccg gatacccgct ttcgcaggaa tggagatgga aagatttcag cctattcggc
     4861 aatcatcaaa taccgcttcc caactttatt tttgatgcga cagccggccg gcaaccaagg
     4921 tggcggcgat gacgacaaac acgcccaagg cggacacggg cgacaggtgt tcgcccaaaa
     4981 tcaaaaccgc cagcagcacg ccgacgacgg gttcgagcga aatcaacagt cccgacacgt
     5041 tggcaggaac acggctcatc cccttgttcc acagccaata ggcgtaccag ccgcacccca
     5101 cgcccaaata cagcagcgac aataccattc cgacgctcca gtccacggta taactttgcg
     5161 ccaaagcaag cgaaaacggc aggcacatca acgatgcggc ggcaatggaa acagatgtga
     5221 atgccggtgc gccgatgcgt gcaatcagcc tttgcgtcgg acgcatagcg gcacaaaagc
     5281 ccgcgcccgc caacaacacc agcaggcagc cgaaccagcc gacttcgccg ccctcttccg
     5341 caccgcccgc catcagcagc gcgacaccgg caaatgccgc cgcgccgcat atccagtggt
     5401 aggcacgcgc tttgtcgttg aagaaaaagt gtccgacaaa caccatcagc agcggctcga
     5461 gtccgacaat gaccgatgcg ctggcggcgg aagtgtattt caacccgaca aactgaagca
     5521 gcagggtcag cacatagttg acgaacgaca caatcagcaa cggcttccat tcctcacgcg
     5581 gaatcttgcc gacatgacgg cggcaggcgg gcagtgcagg cagcgcagca atcagcaggc
     5641 gcacgccgac catcaatgcg ggatcgatgc cgccatagac atatttggcg gcaataaacg
     5701 agctgctcca gataatcagg gcaaggattt ggtaaaacat agtgagtgat aaagtcagat
     5761 ggtcatacaa aagtatagcg gattaacaaa aatcaggaca aggcg
//
LOCUS       DAXIFD010000124         5793 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.124, whole genome shotgun sequence.
ACCESSION   DAXIFD010000124 DAXIFD010000000
VERSION     DAXIFD010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5793
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.124"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(810..1055)
                     /locus_tag="ACFOCN_001601"
     CDS             complement(810..1055)
                     /locus_tag="ACFOCN_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970717.1"
                     /translation="MLKSIELNSHIRNRLAAYLKGRGMDFQTAMREEKGNKEIASIVH
                     SGLPTLVRKLYSEQKMQKFFWEKRDLIADYISRRMQG"
     gene            1167..1595
                     /locus_tag="ACFOCN_001602"
     CDS             1167..1595
                     /locus_tag="ACFOCN_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HFC6970718.1"
                     /translation="MMFSWFKLFHLFFVISWFAGLFYLPRIFVNMAMIDAPRGNPEYV
                     RLSGMAVRLYRFMSPLGFGAVVFGSAIPFAAGWWGSGWVHVKLCLGLMLLAYQLYCGV
                     LLRRFQDYSNAFSHRWYRVFNEIPVLLMVAALYLVVFKPF"
     gene            1607..2083
                     /locus_tag="ACFOCN_001603"
     CDS             1607..2083
                     /locus_tag="ACFOCN_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HFC6970719.1"
                     /translation="MPIEIERRFLIGNDNWRQYADEPLLLKQAYLSVEKERTVRVRIV
                     GQQAWLTLKGYISELSRSEFEYEIPLADAEKMMETMCPFKMEKWRYPVRWGGSLFEID
                     VFLGDNAPLVVAEIELPDENADFDRPDWLGREITADGMFTNAYLSRHPFSSWKNAV"
     gene            complement(2433..2921)
                     /locus_tag="ACFOCN_001604"
     CDS             complement(2433..2921)
                     /locus_tag="ACFOCN_001604"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HFC6970720.1"
                     /translation="MLKLTLIAACAENLCIGAGNAMPWHIPEDFAFFKAYTLGKPVIM
                     GRKTWESLHVKPLPGRRNIVISRQADYCAAGAETAASLEAALALCAGAEEAVIMGGAQ
                     IYGQAMPLATDLRITEVDLSVEGDAFFPAIDRTHWKEAERTERRVSSKGTSYAFVHYL
                     RY"
     gene            complement(2987..4030)
                     /gene="aroG"
                     /locus_tag="ACFOCN_001605"
                     /pseudo
     CDS             complement(2987..4030)
                     /gene="aroG"
                     /locus_tag="ACFOCN_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
     gene            complement(4192..4419)
                     /locus_tag="ACFOCN_001606"
     CDS             complement(4192..4419)
                     /locus_tag="ACFOCN_001606"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970721.1"
                     /translation="MGNTRIPIKSFFKQLVLFVFNIFLAYEILPDVQAESAAGCSVPD
                     CRGNGKTDVPCGFVRMNGGYCFYQSVSFSLE"
     gene            4646..4954
                     /locus_tag="ACFOCN_001607"
     CDS             4646..4954
                     /locus_tag="ACFOCN_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970722.1"
                     /translation="MTPWADAYADLRGKTKVMTTQMCASRDVSKSAKGWSVGIGLNVG
                     KQLTDSVGLEFDPYYRHKTICKPREIVLDGDKTKMGRSKSNEYGFRVTATFYSQLKSK
                     "
     gene            complement(5003..5107)
                     /locus_tag="ACFOCN_001608"
                     /pseudo
     CDS             complement(5003..5107)
                     /locus_tag="ACFOCN_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            5708..5793
                     /locus_tag="ACFOCN_001609"
                     /pseudo
     CDS             5708..5793
                     /locus_tag="ACFOCN_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237266.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
BASE COUNT         1426 a         1468 c         1323 g         1576 t
ORIGIN      
        1 aatctagacc tttcggtgcg gaaacttatc ggataaaacg gttttccctg catcctggat
       61 tcccactttc gtgcgaatga cgggatatag gtttcactac ggacgtgttc agattaccgc
      121 ctgcgcggga aggacggaat ttcagattgt tgtttttgat tttctgtttt gtgggaataa
      181 cgggattttg gatgatgtgc atttatcggg aaaactaaaa accctccgcc gtcattcccg
      241 tgaaagcggg aatctagaat ttcaatgccg caagaattta tcggggatgt ccggggtttg
      301 aaggtctgga ttcccgcctg cgcgggaatg acggtttaga aatcacctga aacgagaaaa
      361 agaaccgaaa ccagataagt cggattcccg cacgggaggg aaggacggga tttcaggtta
      421 ctgtttttga ttttctgttt tgtgggaata acgggatttt ggatgatgtg cattttcggg
      481 aaaactaaaa accctccgcc gtcattcccg cgaaagtggg aatctagaat tttaatgcgg
      541 caaaaattta tcggaaaaaa ccgaagttta aagacctaga ttcccgcctg cgcgggaatg
      601 acggtttaga aatcacccga aacgagaaaa agaaccgaaa ccgaacaagc cggattaccg
      661 cctgcgcggg aatgacggct caaaagttac gaaacgaaaa ataaccgaaa ccaaacaagt
      721 cggattcccg cgcgggcggg aatgacgata agcataattt caatctgcca tattgtcttt
      781 tcacttgcct gaaaacagat ttcagccgcc tatccctgca tccggcggct gatgtagtcg
      841 gcaatcaaat cccgcttttc ccaaaaaaac ttctgcattt tttgttcgga atacagtttg
      901 cggaccagag tgggcagacc gctgtggacg atggaggcga tttctttgtt gcctttttcc
      961 tcccgcatcg ccgtctgaaa atccataccc ctgcctttca gatatgctgc aaggcggttg
     1021 cggatgtggg aattgagttc gatggatttg agcattttgc ctccgttttg cggtaaggat
     1081 ttatttgatt tgtttatccg cctgatttta tcacgtttcc caagcggttt gcctgtacaa
     1141 taccgctttt cggcagggtg tgggcgatga tgttttcttg gttcaagctg tttcacttgt
     1201 tttttgtcat ttcgtggttt gcagggctgt tttacctgcc gaggattttc gtcaatatgg
     1261 cgatgattga tgcgccgcgc ggcaatcccg agtatgtgcg cctgtcgggt atggcggtgc
     1321 ggctgtaccg ttttatgtcg ccgttgggct tcggcgcggt cgtgttcggc tcggcgatac
     1381 cgtttgccgc cggttggtgg ggcagcggtt gggtacatgt caaactgtgt ttggggttga
     1441 tgctcttggc ttaccagttg tattgcggcg tgctgctgcg ccgttttcag gattacagca
     1501 atgctttttc acaccgctgg taccgcgtgt tcaacgaaat ccccgtgctg ctgatggttg
     1561 ccgcgctgta tctggtcgtg ttcaaaccgt tttgacggag catcttatgc cgatagaaat
     1621 cgaacgccgt tttttgattg gaaacgacaa ctggcggcaa tacgccgacg aaccgctgct
     1681 cttgaaacag gcttatcttt ctgtcgagaa agaacgtacc gtccgtgtcc gtattgtcgg
     1741 acaacaggcg tggctgacac tgaaaggcta tatttcagaa ctcagccgca gtgagtttga
     1801 atacgaaatc ccgcttgccg atgcggaaaa gatgatggaa acgatgtgtc cgtttaagat
     1861 ggaaaaatgg cgttatccgg tcagatgggg cggcagcctg tttgaaatcg atgtttttct
     1921 tggcgataat gcgcctttgg tcgtcgcgga aatcgagttg cccgacgaga atgccgattt
     1981 tgaccgtccg gactggctgg gacgggaaat cactgccgac ggtatgttta ccaatgccta
     2041 tttgagcagg catccgttct caagctggaa aaatgccgtc tgaaacggct tcagacggca
     2101 ttctccgaca accatcgcaa atccaaagac agcctctata tccttatttc tgctttcttt
     2161 gttccattat tcccaataaa tccccataac ctaaaatctc gtcattcccg cgcaggcggg
     2221 aatccggttc tttaaacttc ggttttttcc gataaattgc tttagctttt cgtttccgga
     2281 ttcccgcttt tgcgggaatg acgatggaag attgttgtta tttcggataa attaccctaa
     2341 ctttaaaatc ccggattccc atcttcgggg gaataacaat attttctatt tcagcccatc
     2401 atttgcgggg gattttatag agagtttata tttcaatatc tcaaataatg cacaaaagca
     2461 tagctcgtgc ctttgctgct gacacggcgt tccgtccgct ctgcttcttt ccaatgcgtc
     2521 cggtctattg cggggaaaaa tgcatctcct tccacagaca aatccacttc ggttatccgc
     2581 aaatcggtcg ccaatggcat cgcttgtccg tatatctgcg cgccgcccat aatgacggct
     2641 tcttccgcgc ctgcgcacaa tgccaatgcc gcctccaaac ttgccgccgt ttccgcgcct
     2701 gccgcgcaat aatccgcctg ccggctgatg acgatgttcc tccgtccggg caggggtttg
     2761 acgtgcaggg attcccacgt tttccgcccc ataatgacgg gtttgcccaa ggtataggct
     2821 ttgaaaaatg cgaaatcttc ggggatgtgc caaggcatcg cattgcccgc cccgatgcac
     2881 aggttttccg cacacgccgc aattagggtt aatttgagca tatttcctcc acaaaaatgc
     2941 cgtctgaacg cttcagacgg cattttatga cattccgtgt caaaagcgcc atacgttttt
     3001 tgtttgcacc tgccaacaat gccaacagtt cttcagtcgc gccccaaccg atacacgcat
     3061 cggtaatgct tttgccgtac acttccggct tgtcctgcct gccttcgacc aaatggcttt
     3121 ccaccatcac gcccatgata ttgccgccgt cctgttccaa ttgggcggca atatcttgtg
     3181 ccacttccat ctgccgggtg taatccttgc ggctgttggc gtggctgcaa tctatcatca
     3241 gcttgtcggt tacccctgcc gcacgcagtt gttccgccgc ctcgctgacg tgtcccgcat
     3301 cataattcgg ctcttttccg ccgcgcaaaa tgacatgaca gtcaggattg ccgccggtat
     3361 ggacaatggc ggaatgcccg gccttggtta cagacaggaa atgatgcgaa tggctcgccg
     3421 caccgattgc gtcgatggca atcttcaaat tgccgtccgt accgttttta aagccgacgg
     3481 ggcaggacag cccgcttgcc aattcgcggt gaacttggct ttcggtcgtc cgcgcaccga
     3541 ttgcccccca agaaatcaag tccgcataat attgcggcgt aatcatatcc aaaaactcgg
     3601 tagaggcagg catacccata ttgttcagcg acaacaacag gctgcgcgcc tgacgcaaac
     3661 cgaaattgat gtcaaacgta ccgtccaaat gcgggtcgtt aatcaaacct ttccaaccca
     3721 ccgtcgtcct cggcttctcg aaataaacgc gcatcacaat caaaagctcg ttttcatact
     3781 gcttgcggag tttcaacaaa cgctccgcat attccaacgc cgctttcgga tcgtgaatcg
     3841 aacacggccc gataataacc aacagccgct tgtccctgcc gtgaaccaaa tcggaaattt
     3901 cctgacgggt gcggtgaacc aagcccgaag cctctttgga aatcggcagc tcgtaaagat
     3961 gggcaatcgg cggcaacaac tctttaactt ctttaatctt aatatcgtct gtggggtaat
     4021 ggtgtgtcat cttgcatctt tcctgatggt tttttatacg cggcttaggt tacatcgttt
     4081 accttgcaca aacaagtgca acatattact acaaagctat tttatttcaa aataactgat
     4141 atatcttttt tcatagattt taaatttcat atttttaata ttttaggaat tttattccaa
     4201 agaaaaagaa acagattgat aaaaacaata cccgccattc attcggacaa aaccgcacgg
     4261 aacatccgtt ttcccatttc cacgacaatc cggtacagaa caccccgctg ccgattccgc
     4321 ctgcacatcc ggcaaaattt catacgcaag gaaaatgttg aaaacaaaaa gaactaattg
     4381 cttgaaaaaa gatttaattg gaatgcgggt atttcccaca ctttctccat ttattcatcc
     4441 tcattatagg aagaaaaaca tgaaaaaacc ctgcttgcac tctcacttgc agccgtgtcc
     4501 gccgttacgg tagccgatat tcctgagtct aacggcaagg gcaaagccat catcggcgat
     4561 aaggaaaaac accgttacca agcatgaaaa ccttgttttg aaagtctatg gcgaaatccg
     4621 ccaagatttg ggggacggat gatccctgac cccttgggcg gatgcatatg cagatttgcg
     4681 cggcaaaacc aaagtgatga cgacccagat gtgtgcttcc cgcgatgtca gcaaaagcgc
     4741 caaaggttgg agtgtcggta tcggtctgaa tgtaggcaaa cagttgaccg acagcgtcgg
     4801 tctcgagttt gatccatact accgtcacaa aacaatctgc aaaccccgtg agattgtttt
     4861 ggacggcgac aaaaccaaaa tgggccgctc caaatccaac gagtacggct tccgcgtaac
     4921 cgcaacgttc tatagtcaat taaaatcaaa gtaggacagt agtgcatcgt caaatcgggc
     4981 gtaatcagac aaaacggttt gcagatgcag aacgggcggt aacttccagt acaaaaaacg
     5041 gagcagttct ttctgtactt ttttctttaa tttgcagtgt gttatcttca tatttcgagg
     5101 gtaacatatc tgctaatcta gtacagcccc tagtttaaag ctttgtttct taagtccgca
     5161 gagtatgcca tggttagacc ttcaaagttg agtattgtac tattttgttt ttaattaact
     5221 ataaaacgct tgtgtgaata ggaagactgc agaatattgc tgccttttcc tgtttgcttt
     5281 aaataaacag aaaatgccgt ctgaaaccga ttttcagacg gcatttgtcc cttaaaacac
     5341 gttttttcaa gcgcgaccat accaaacacc cacaggttgc cttccaccct tcgtacaacc
     5401 tttgctccat caaacatcca cttcctaaat actgatgtct gcttaggttg aatcggcatt
     5461 cgtacgatta cggcacaccg cctaatctgt acctgcgtct gttgcgccca ataccaaaga
     5521 ctacctgaaa atctcccaaa cttttcaggt agccttatca cgttttcgac tgttaccaca
     5581 cgcccaaaga ccgcctgaaa ccctttttca gacgttccgc tccgataccc ccccaacaaa
     5641 acgccgcccg aacgcatgtt cagacggcat tttctttgcg tcgattcatt ccccgatata
     5701 gcgcaggtct ttttccagcc atttcccttc caaacaaaaa agcaccgacg gcggccgatg
     5761 ccccttcctt tacaggttcc cctatttttt agc
//
LOCUS       DAXIFD010000125         5736 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.125, whole genome shotgun sequence.
ACCESSION   DAXIFD010000125 DAXIFD010000000
VERSION     DAXIFD010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5736
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.125"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..313)
                     /locus_tag="ACFOCN_001610"
     CDS             complement(<1..313)
                     /locus_tag="ACFOCN_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6970723.1"
                     /translation="MPDFQRITIENIEYFIVDSIQNLRAEDSFIHRNNKLSVFGGNGE
                     ARKYVGSYIDDSGRKLSTFFEYENWGITETKNGRRVEYPLIQKNCFFNKKNLQRYLVD
                     AK"
     gene            complement(315..1550)
                     /locus_tag="ACFOCN_001611"
     CDS             complement(315..1550)
                     /locus_tag="ACFOCN_001611"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6970724.1"
                     /translation="MTISTMAQTHDTRLQKTLLFPSQQGWKSKTFLKPDSHIRLATVF
                     SGIGAVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDITQFDARKFRN
                     QVDILVGGSPCQAFSMVGKRAGLEDTRGTLFYEFSRVVDEVQPKIFIYENVKGLLNHD
                     NGKTWKVVKSVFYSLGYDLYFQIMNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIE
                     LEHTMQDFLEDYTDSKYFLREKGVKFVTSSKNRQKRYTQINGEIALCQKANQQFNWHG
                     DFIFQAARESEFDDFIFDVNNVEEKYYLSEKIKNYVLAGGTKNFKTSTETDLPVARPL
                     LQTMHKMHRAGVDNYVTHNRGRIRKLTPRECLRLMGFRDDFKILVSDTQMYRQAGNSI
                     VVDVLIAILKQMDITLYGE"
     gene            complement(1587..2558)
                     /gene="hldA"
                     /locus_tag="ACFOCN_001612"
     CDS             complement(1587..2558)
                     /gene="hldA"
                     /locus_tag="ACFOCN_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose synthase"
                     /protein_id="HFC6970725.1"
                     /translation="MSAKFQQETLKSRFAQAKVLVVGDVMLDRYWFGDVSRISPEAPV
                     PVAKIGRIDQRAGGAANVARNIASLGGRAGLLSVTGNDEAADALDALMVQDGVASYLM
                     RDKQIATTVKLRVVARNQQLIRLDFEEHPNCEVLEQIKQKYREILPEYDAIIFSDYGK
                     GGLSHISDMIDWAKHAGKTVLIDPKGDDYEKYVGATLITPNRAELKEVVGSWKNESEL
                     TEKAQNLRRHLDLTAVLLTRSEEGMTLFSEGEPIYQPTRAQEVYDVSGAGDTVIAGMG
                     LGLAAGCTMPEAMYLANTAAGVVVAKLGTAVCSFAELIKALSGQSTM"
     gene            complement(2613..3353)
                     /gene="pyrF"
                     /locus_tag="ACFOCN_001613"
     CDS             complement(2613..3353)
                     /gene="pyrF"
                     /locus_tag="ACFOCN_001613"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003756133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HFC6970726.1"
                     /translation="MNPLISDFQTPQQRTPVIVALDFSNEKDTLGFVRNLDPTLCQIK
                     IGKELFTATGRNLAESLINQGFKLFLDLKYHDIPHTVAQACKVAADMGVWMVDMHASG
                     GRRMMEAAAEAVAGYGTKPLLIGVTVLTSMEQSDLAEIGLNTAPEEQVIRLAKLAQSS
                     GLDGVVCSAQEAAPLRRELGQDFVLVTPGIRLDVAGNNDDQRRIMTPAEALAAGSTYL
                     VMGRPVTQAADPVAVLREVNRVANLEAN"
     gene            complement(3879..4526)
                     /gene="adk"
                     /locus_tag="ACFOCN_001614"
     CDS             complement(3879..4526)
                     /gene="adk"
                     /locus_tag="ACFOCN_001614"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004017 - adenylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HFC6970727.1"
                     /translation="MKALLLGAPGAGKGTQAQFITAAFGIPQISTGDMLRAAIKAGTP
                     LGLEAKKIIDEGGLVRDDIIIGMVKERIAQDDCKNGFLFDGFPRTLAQAEAMVEAGVD
                     LDAVVEIDVPDSVIVDRMSGRRVHLASGRTYHVTYNPPKVEGKDDVTGEDLIQRDDDK
                     EETVKKRLAVYHEQTEVLVDFYSKLEGEHAPKYIKVDGTQPVEAVKAEVLGALGK"
     gene            4741..5580
                     /gene="htpX"
                     /locus_tag="ACFOCN_001615"
     CDS             4741..5580
                     /gene="htpX"
                     /locus_tag="ACFOCN_001615"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HFC6970728.1"
                     /translation="MKRIFLFLATNIAVLVVINIVLAVLGINSRGGTGSLLAYSAVVG
                     FTGSIISLLMSKFIAKQSVGAEVIDTPRTEEEAWLLNTVEAQARQWNLKTPEVAIYHS
                     PEPNAFATGASRNSSLIAVSTGLLDHMTRDEVEAVLAHEMAHVGNGDMVTLTLIQGVV
                     NTFVVFLSRIIANLIARNNDGSQSQGTYFLVSMVFQILFGFLASLIVMWFSRQREYRA
                     DAGAAKLVGAPKMISALQRLKGNPVDLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARL
                     KSL"
BASE COUNT         1434 a         1437 c         1285 g         1580 t
ORIGIN      
        1 cttttgcatc aaccaaataa cgctgtaaat ttttcttatt aaaaaaacaa tttttctgaa
       61 tgagaggata ttctaccctc cttccatttt ttgtctcagt aatcccccaa ttttcatact
      121 caaaaaatgt acttagtttt cgaccactat catcaatata actacctaca tatttgcgtg
      181 cttccccatt accaccaaaa acagataact tgttattcct gtgaataaaa ctatcttccg
      241 cacgtaaatt ttgaatacta tcgacaataa aatactctat gttttcaata gtaattcttt
      301 gaaaatccgg cattttactc tccataaagc gtaatatcca tttgttttaa tatagcgatt
      361 aatacatcaa caacaatact gtttcccgct tggcgataca tttgagtatc actaactaaa
      421 attttaaaat catctctaaa acccattagc cgcaaacatt ccctaggtgt taatttacga
      481 atacgtccac gattatgagt aacataatta tcaaccccgg cacgatgcat tttatgcata
      541 gtttgcaata atgggcgagc tacaggcaaa tcagtttccg tactggtttt aaaatttttt
      601 gttcctcctg ccaaaacata atttttgatt ttttcagaaa gataatattt ttcctcaacg
      661 ttatttacat caaaaataaa gtcatcaaat tcagattcgc gggctgcctg aaaaataaaa
      721 tcaccatgcc aattaaattg ttgatttgct ttttggcata aggcaatttc tccattaatc
      781 tgtgtataac gtttttgtct atttttagaa ctggtaacaa atttcacacc cttttcacgt
      841 aaaaaatatt tgctatcagt atagtcctcc aaaaaatctt gcatagtatg ttctaattca
      901 atcttttcag gaaactgaaa accatttata ggaggggtat gaaagccaac aacaaaaata
      961 cgctcacgat gttgaggaat cccataatcc ttactattca ttatttggaa atataagtca
     1021 taaccaagtg aataaaaaac actttttaca actttccaag tttttccatt atcatgattg
     1081 agcaagccct ttacattttc ataaataaat atctttggtt ggacttcatc cacaacgcga
     1141 gaaaattcat agaataatgt tcctcgtgta tcttctaatc ctgcacgttt gccaaccatg
     1201 gaaaatgctt ggcaaggact gcctccaact aaaatatcaa cttgatttct aaactttctc
     1261 gcatcaaatt gagtaatgtc gttatgccaa aaatcttcat ttaatttata gtttccaaga
     1321 taactttttt taacgtatgg atcaatatct cctgcaaaaa caatggtatg gtttaaattt
     1381 aatcggtgga atgcctgttc aaccgcacca atcccgctga atacggttgc taatctaata
     1441 tgtgaatcag gtttaagaaa agttttagat ttccaacctt gttgactggg aaagagcaaa
     1501 gttttttgta atcgagtatc gtgtgtctgt gccattgtcg aaatagtcat acttatatcg
     1561 ttctgtttat cttatcaata tgaaaactac attgttgatt gccctgacaa tgccttgatc
     1621 aattcggcaa acgagcaaac cgccgtaccg agtttcgcca cgacaacccc ggccgcagta
     1681 ttggcaaggt acatggcttc gggcatggtg cagcctgccg ccaaacccaa gcccattccg
     1741 gcaatgacgg tgtcacccgc accggatacg tcgtaaactt cttgggcgcg ggtgggctgg
     1801 taaatcggtt cgccttcgct gaacaaggtc atgccttctt cgcttcgggt cagtaaaacg
     1861 gcggtcaggt cgaggtggcg gcgcaggttt tgcgcttttt cggtcagctc gctttcgttt
     1921 ttccaactgc cgaccacttc tttcaattcg gcgcggttag gcgtaatcag agttgcaccg
     1981 acatattttt cgtaatcgtc gcctttgggg tcgattaaga cggttttgcc ggcgtgtttc
     2041 gcccaatcga tcatatcgga gatatgcgac aggccgcctt tgccgtagtc tgaaaaaatg
     2101 attgcgtcgt attcgggcaa gatttcgcgg tatttctgct tgatttgttc caacacttcg
     2161 cagttgggat gttcttcaaa atcaagacgg ataagctgct ggttgcgggc gacgacgcgc
     2221 agtttgacgg tggtggcgat ttgtttgtcg cgcatcagat aggaggcgac gccgtcctgc
     2281 accatcagcg catcgagcgc gtcggcggct tcgtcgttgc cggttacgga caacagccct
     2341 gccctgccgc ccaacgaagc gatgttgcgc gcgacatttg ccgctccgcc cgcgcgttgg
     2401 tcgattcgtc cgattttcgc caccggcacg ggggcttcgg gcgaaatacg ggacacatcg
     2461 ccgaaccaat agcggtcgag catcacgtcg ccgacaacca ggactttggc ttgcgcgaaa
     2521 cgggatttga gggtttcttg ttggaacttg gcggacatat tgcctccgtt gtattttttc
     2581 agacggcctc agcctgtaag gccgtctgaa aatcagtttg cttcaaggtt tgccacgcgg
     2641 ttcacttcgc gcaatacggc taccggatcg gcagcttggg ttacaggacg acccattacc
     2701 aaataagtcg aaccggcagc caaggcttcg gccggtgtca tgatgcggcg ctggtcatca
     2761 ttattgccgg caacgtccaa gcggatgccg ggcgtgacca agacaaaatc ctgtcccaat
     2821 tcgcggcgca gcggcgcggc ttcttgggcg gaacagacca cgccgtccaa gcccgaactt
     2881 tgcgccagtt ttgccaagcg gatgacttgt tcttcagggg cggtgttcaa accgatttcc
     2941 gccaaatcgc tttgttccat gctggtcaac acggttacgc cgattaagag cggcttcgtg
     3001 ccgtatccgg caacggcttc tgctgcggct tccatcatac ggcggccgcc cgatgcgtgc
     3061 atatcgacca tccaaacgcc catatcggca gcgactttgc aggcttgcgc gacggtgtgg
     3121 ggaatatcgt ggtatttcaa atcgaggaaa agtttgaaac cttgattgat taagctttct
     3181 gccaaattgc gtcccgtcgc ggtaaacagc tctttgccga ttttgatttg acacaatgtc
     3241 gggtcaaggt tgcggacgaa tccgagcgtg tctttttcgt tggaaaaatc aagggcgacg
     3301 ataacggggg tgcgttgttg cggagtttgg aagtcggaga ttaaaggatt catggtgttt
     3361 tcgtttcggg ttttcagacg acctttatcg tctttttcgc agtatagtgg attaacttta
     3421 aaccggtacg gcgttgtctc gccttagttc aaagagaacg cttctctaag gtgctgaagc
     3481 acaaagtgaa tcggttccgt actatctgta ctgcctgcgg cttcgtcgcc ttgtcctgat
     3541 ttttgttaat ccactataac aacgtaaatt caaaccgtag gtcgggcatt gatgtccgac
     3601 ctacgcgaac tcaagcctcc gacaaactgt ttcggataaa tttgaaccgg tacatcagcc
     3661 gtcattcccg cgcaggcggg aatccattga taaaactcag ttcatcagat ttaaacagcg
     3721 attgcccaaa ttcagaaatg gattcccgcc tgcgcgggaa tgacgccaaa tgattatttt
     3781 tcggttgcaa cacgctgttt atcaaaaaca ggtcgtctga aaacctgatt ttctgttttc
     3841 agagtgcgaa gcctgcccgt gggtacgacc ttttcgattt atttgcccaa tgcgcccaat
     3901 acttcggctt tcacggcttc taccggctga gtgccgtcaa ctttgatgta tttaggcgcg
     3961 tgttcgcctt ccagtttgct gtaaaaatcg accaaaactt cggtttgctc gtggtaaacg
     4021 gcaaggcgtt ttttcacggt ttcttctttg tcgtcgtcgc gctgaatcaa atcttcgccg
     4081 gttacgtcgt ctttgccttc aactttgggc gggttgtagg taacgtggta agtacggccg
     4141 gaagccaaat gcacgcggcg gccgctcata cggtcgacaa tcacgctgtc aggcacgtcg
     4201 atttcaacga ctgcatccaa atccacgcct gcttcaacca tcgcttcggc ttgtgccaat
     4261 gtgcgcggga aaccgtcgaa caggaaaccg tttttgcagt cgtcttgcgc gatgcgttct
     4321 ttgaccatgc cgataatgat gtcgtcgcgc accaagccgc cttcgtcaat gatttttttc
     4381 gcttccaaac ccaagggcgt gccagcctta atcgcggcgc ggagcatgtc gccggtagag
     4441 atttgcggaa tgccgaacgc ggcggtgatg aattgcgcct gagtgccttt gcccgcgccc
     4501 ggcgcgccta aaagtaatgc tttcatgaag tgatcctttg aaatgtgttt attggaatca
     4561 aacagatggt ttacgattct acacggcttg gcacaatagt tcaaaaacca actgcacaaa
     4621 ctgccatttg caagcaaatg ttttgcatac ctttgccgag tctgatattc acaagccggc
     4681 aactttttgg gacaatcccc aaaatttcaa aacatcacac cctaccaaaa aggaacatcc
     4741 gtgaaacgaa tttttctgtt tttggctacc aatatcgctg ttttggtcgt aatcaacatt
     4801 gttttggcgg ttttgggcat caacagccgg ggcggcacgg gcagcctgtt ggcgtattcc
     4861 gccgtcgtcg gcttcactgg ttcgattatt tcgctgctga tgtccaaatt catcgccaaa
     4921 caatcggtcg gcgcggaagt tatcgacacg ccgcgcaccg aagaagaagc ctggcttttg
     4981 aacactgtcg aagcccaagc gcggcaatgg aacctgaaaa cgcccgaagt cgccatctac
     5041 cactcccccg aacccaatgc ctttgccacg ggcgcatcga gaaacagctc cctgatcgcc
     5101 gtcagcaccg gtttgctcga ccatatgacg cgcgacgaag tggaagccgt attggcgcac
     5161 gaaatggcac acgtcggcaa cggcgatatg gttacgctga cgctgattca aggcgtggtc
     5221 aataccttcg tcgtgttcct gtcgcgcatt attgccaacc tgattgcccg aaacaacgac
     5281 ggcagccagt cccagggaac ttatttcctg gtcagcatgg tattccaaat cctattcggc
     5341 ttccttgcca gcttaattgt catgtggttc agccgacaac gcgaataccg cgccgacgcg
     5401 ggcgcggcaa aactggtcgg cgcaccgaaa atgatttccg ccctgcaaag gcttaaaggc
     5461 aacccggtcg atttgcccga agaaatgaac gcaatgggca tcgccggaga tacgcgcgac
     5521 tccctgctca gcacccaccc ttcgctggac aaccgaatcg cccgcctcaa atcgctctga
     5581 gccgatttga aacaacaaaa aaaccgtacg cgcaagcagt acggtttttt gtatatgctg
     5641 tctgaaaaca tcaggtttcc ataccaacac caaccgtatc catttccgca ccggatacgc
     5701 cgcattgata taccctgata aaccgtgtcc ggacag
//
LOCUS       DAXIFD010000126         5694 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.126, whole genome shotgun sequence.
ACCESSION   DAXIFD010000126 DAXIFD010000000
VERSION     DAXIFD010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5694
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.126"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(79..1425)
                     /gene="mnmE"
                     /locus_tag="ACFOCN_001616"
     CDS             complement(79..1425)
                     /gene="mnmE"
                     /locus_tag="ACFOCN_001616"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HFC6970729.1"
                     /translation="MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAEALCGKTPKP
                     RVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELG
                     ARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLV
                     EDLITLRMLVEATLDFPEEDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLN
                     VVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRE
                     TDDVVERIGIERSRKAVSEADVALVLVDPREGVNDKTRAILDALPPELKRIEIHSKSD
                     LHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGEGEGLFLARTRHVNAL
                     KAAQEELSLAALCGNHQIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK"
     gene            1556..1711
                     /locus_tag="ACFOCN_001617"
     CDS             1556..1711
                     /locus_tag="ACFOCN_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970730.1"
                     /translation="MEKRNTYAFLLGIGSLLGLFHPAKTAIRPNPADDLKNIGGDFQR
                     AIEKARK"
     gene            1708..2139
                     /locus_tag="ACFOCN_001618"
     CDS             1708..2139
                     /locus_tag="ACFOCN_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2335 domain-containing protein"
                     /protein_id="HFC6970731.1"
                     /translation="MTENAQDKARQAVETVVKSPELVEQILSDEYVQIMIARRFHSGP
                     LPPPSDLAQYNDIISNGADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISVILIL
                     LFAVFLVWSGYPATAASLAGGTVVALAGAFVIGRSRDQGKN"
     gene            2273..>5694
                     /gene="app"
                     /locus_tag="ACFOCN_001619"
     CDS             2273..>5694
                     /gene="app"
                     /locus_tag="ACFOCN_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_168458961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion and penetration autotransporter App"
                     /protein_id="HFC6970732.1"
                     /translation="MKTTDKRTTETHRKAPKTGRIRFSPAYLAICLSFGILPQAWAGH
                     TYFGINYQYYRDFAENKGKFAVGAKDIEVYNKKGELVGKSMTKAPMIDFSVVSRNGVA
                     ALVGDQYIVSVAHNGGYNNVDFGAEGSNPDQHRFTYKIVKRNNYKAGTNGHPYGGDYH
                     MPRLHKFVTDAEPVEMTSYMDGRKYIDQNNYPDRVRIGAGRQYWRSDEDEPNNRESSY
                     HIASAYSWLVGGNTFAQNGSGGGTVNLGSEKIKHSPYGFLPTGGSFGDSGSPMFIYDA
                     QKQKWLINGVLQTGNPYIGKSNGFQLVRKDWFYDEIFAGDTHSVFYEPRQNGKYSFHD
                     NNNGTGKIDAKHEHNSLPNRLKTRTVQLFNVSLSETAQEPVYHAAGGVNSYRPRLNNG
                     ENISFIDEGKGELILTSNINQGAGGLYFQGDFTVSPENNETWQGAGVHISEDSTVTWK
                     VNGVANDRLSKIGKGTLHVQAKGENQGSISVGDGKVILDQQADENNKKQAFSEIGLVS
                     GRGTVQLNADNQFNPDKLYFGFRGGRLDLNGHSLSFHRIQNTDEGAMIVNHNQDKEST
                     VTITGNKDIATTGNNNSLDSKKEIAYNGWFGEKDTTKTNGRLNLVYQPAAEDRTLLLS
                     GGTNLNGNITQTNGKLFFSGRPTPHAYNHLNDHWSQKEGIPRGEIVWDNDWINRTFKA
                     ENFQIKGGQAVVSRNVAKVKGDWHLSNHAQAVFGVAPHQSHTICTRSDWTGLTNCVEK
                     TITDDKVIASLTNTDISGNVSLADHAHLNLTGLATLNGNLSANGDTRYTVSHNATQNG
                     DLSLVGNAQATFNQATLNGNTSASGNASFNLSDHAVQNGSLTLSGNAKANVSHSALNG
                     NVSLADKAVFHFESSRFTGQISGSKDTALHLKDSEWTLPSGTELGNLNLDNATITLNS
                     AYRHDAAGAQTGSATDAPRRRSRRSLLSVTPPASVESRFNTLTVNGKLNGQGTFRFMS
                     ELFGYRSDKLKLAESSEGTYTLAVNNTGNEPASLEQLTVVEGKDNKPLSENLNFTLQN
                     EHVDAGAWRYQLIRKDGEFRLHNPVKEQELSDKLGKAEAKKQAEKDNAQSLDALIAAG
                     RDAVEKTESVAEPARQAGGENVGIMQAEEEKKRVQADKDTALAKQREAETRPA"
BASE COUNT         1576 a         1583 c         1381 g         1154 t
ORIGIN      
        1 aaccaaacgg atcggattcc cgtttttatg ggataacgga atgttcagcc ggacaccgcc
       61 acgatgcttt cgatccgttt attttccgat acaaaacctc gaaaaaatca cgccgagcag
      121 gtcgtccgcc gtaaactcgc ccgtgatttc gccgcatgcg acctgcgcca agcgcaagtg
      181 ttcggcaaac agctcgattt gatggttgcc gcacaatgcc gccagcgaca attcttcctg
      241 cgctgctttg agtgcgttga cgtgccgcgt ccgcgccaaa aacagccctt cgccctcgcc
      301 ctgccatccg gcctcgcgca acaacgtccg tttcagcgcg tccaagccgt cgccggtttt
      361 cgccgacagc gcgatgacgg tttccgcgcc cgtaccgaac ccgcctgccg cgtgtgcgtg
      421 caaatcggat ttgctgtgga tttcgatgcg tttcaactcc ggcggcaacg cgtccaaaat
      481 cgcccgtgtc ttgtcgttca cgccttcgcg cggatcgacc aacaccagcg cgacatcggc
      541 ttcggatacg gctttgcggc tgcgttcgat gccgatgcgt tcgaccacgt cgtccgtctc
      601 gcgcaaacct gccgtatcga caatatgcac cggaacgccg tcaatcagga tacgttccct
      661 gaccgcgtcg cgcgtcgttc cggcaatatc ggtaacaatc gccacttcgt cgcccgccag
      721 cgcgttcaac aggctggatt tgccgacatt cggcgcgccg accaatacga cattcagacc
      781 ttcgcgcaaa atcgcgccct gctgcgcgtt ggcaagcaca tcatccacgg cgcggcgcaa
      841 gccgtccagt ttgccgcgtg cgtctgccgc ttcgagaaaa tcaatgtctt cctcgggaaa
      901 atctaacgtc gcttcgacca gcatccgcaa ggtaatcaag tcttcgacta gaccgtgtat
      961 ccgccgcgaa aaatcgcctt tgagcgagcg caacgccaga cgcgccgccg aacggctgga
     1021 tgcgtcaatc aaatccgcca cgccttccgc ctgtgccaag tccagtttgt cgtttaaaaa
     1081 cgcacgcttc gtaaactcgc ccggttcggc aaggcgcgcg cccaattcca aacagcggtt
     1141 cagcagcata tccatcacta ccggcccgcc gtgtccctga agctcgataa catcttcgcc
     1201 cgtaaaactt gccggtgcgg caaaaaaaag caaaagcccg ctgtcgattg cctgaccgtc
     1261 cgcgtccgta aaatcagcat aggttgccac gcgcggcttg ggcgttttcc cacacaaagc
     1321 ctctgccatc ggcagcaggt ttttccccga tatgcgtatc acgcccacgc cgccgcgccc
     1381 gggtgcggta gcgactgccg caatcgttgg aacgttatcc gacataaaac ccccgaaaat
     1441 tcaaaacagc cgcgattata gcaaatgccg tctgaagtcc gacggtttgg ctttcagacg
     1501 gcataaaacc gcaaaaatgc ttgataaatc cgtccgcctg acctaatata accatatgga
     1561 aaaacgaaac acatacgcct tcctgctcgg tataggctcg ctgctgggtc tgttccatcc
     1621 cgcaaaaacc gccatccgcc ccaatcccgc cgacgatctc aaaaacatcg gcggcgattt
     1681 tcaacgcgcc atagagaaag cgcgcaaatg accgaaaacg cacaggacaa ggcgcggcag
     1741 gctgtcgaaa ccgtcgtcaa atccccggag cttgtcgagc aaatcctgtc cgacgagtac
     1801 gtgcaaataa tgatagcccg gcgtttccat tcgggaccgt tgccgccgcc gtccgacttg
     1861 gcgcaataca acgacattat cagcaacggg gcagaccgca ttatggcaat ggcggaaaaa
     1921 gaacaagccg tccggcacga aaccatacgg caagaccaaa ccttcaacag gcgcgggcaa
     1981 ctgtacggct tcatcagcgt catcctgata ctgctttttg ccgtcttcct cgtatggagc
     2041 ggctaccccg caaccgccgc ctcccttgcc ggcggcacag tggttgcctt ggcgggtgct
     2101 ttcgtgattg gaagaagccg agaccaaggc aaaaattaat gacaaatcct agggcgtgct
     2161 tcatatccgc ccgaacgccg aaccgcacat ataggcacat cccgcgcgcc gcccggaagc
     2221 ggaagccgcg ccctcccaaa caaacccgaa tcccgtcaga taaggaaaaa taatgaaaac
     2281 aaccgacaaa cggacaaccg aaacacaccg caaagccccg aaaaccggcc gcatccgctt
     2341 ctcgcctgct tacttagcca tatgcctgtc gttcggcatt cttccccaag cttgggcggg
     2401 acacacttat ttcggcatca actaccaata ctatcgcgac tttgccgaaa ataaaggcaa
     2461 gtttgcagtc ggggcgaaag atattgaggt ttacaacaaa aaaggggagt tggtcggcaa
     2521 atcaatgaca aaagccccga tgattgattt ttctgtggtg tcgcgtaacg gcgtggcggc
     2581 attggtgggc gatcaatata ttgtgagcgt ggcacataac ggcggctata acaacgttga
     2641 ttttggtgcg gaaggaagca atcccgatca acatcgtttt acttataaaa ttgtgaaacg
     2701 gaataattat aaagcaggga ctaacggcca tccttatggc ggcgattatc atatgccgcg
     2761 tttacataaa tttgtaaccg atgcagaacc tgttgaaatg accagttata tggatgggcg
     2821 gaaatatatc gatcaaaata attaccctga ccgtgttcgt attggggcag gcaggcaata
     2881 ttggcgatct gatgaagatg agcccaataa ccgcgaaagt tcatatcata ttgcaagtgc
     2941 gtattcttgg ctcgttggtg gcaatacctt tgcacaaaat ggatcaggtg gtggcacagt
     3001 caacttaggt agtgaaaaaa ttaaacatag cccatatggt tttttaccaa caggaggctc
     3061 atttggcgac agtggctcac caatgtttat ctatgatgcc caaaagcaaa aatggttaat
     3121 taatggggta ttgcaaacgg gcaaccccta tataggaaaa agcaatggct tccagctggt
     3181 tcgtaaagat tggttctatg atgaaatctt tgctggagat acccattcag tattctacga
     3241 accacgtcaa aatgggaaat actcttttca cgacaataat aatggcacag gaaaaatcga
     3301 cgccaaacat gaacacaatt ctctgcctaa tagattaaaa acacgaaccg ttcaattgtt
     3361 taatgtttct ttatccgaga cagcacaaga acctgtttat catgctgcag gtggtgtcaa
     3421 cagttatcga cccagactga ataatggaga aaatatttcc tttattgacg aaggaaaagg
     3481 cgaattgata cttaccagta acatcaacca aggtgctgga ggattatatt tccaaggaga
     3541 ttttacggtc tcgcctgaaa acaacgaaac gtggcaaggc gcgggcgttc atatcagtga
     3601 agacagtacc gttacttgga aagtcaatgg cgtggcaaac gaccgcctgt ccaaaatcgg
     3661 caaaggcacg ctgcacgttc aagccaaagg ggaaaaccaa ggctcgatca gcgtgggcga
     3721 cggtaaagtt attttagatc aacaagcaga tgaaaataat aaaaaacaag cctttagtga
     3781 aatcggcttg gtcagcggca ggggtacggt gcaactgaat gccgataatc agttcaaccc
     3841 cgacaaactc tatttcggct ttcgcggcgg acgtttggat ttgaacgggc attcactttc
     3901 gttccaccgt attcaaaata ccgatgaagg ggcgatgatt gtcaaccaca atcaagacaa
     3961 agaatccacc gttaccatta caggcaataa agatattgct acaaccggca ataacaacag
     4021 cttggatagc aaaaaagaaa ttgcctacaa cggttggttt ggcgagaaag atacgaccaa
     4081 aacgaacggg cggctcaacc ttgtttacca gcccgctgca gaagaccgca ccctgctgct
     4141 ttccggcgga acaaatttaa acggcaacat cacgcaaaca aacggcaaac tgtttttcag
     4201 cggcagacca acaccgcacg cctacaatca tttaaacgac cattggtcgc aaaaagaggg
     4261 cattcctcgc ggggaaatcg tgtgggacaa cgactggatc aaccgcacat ttaaagcgga
     4321 aaacttccaa attaaaggcg gacaggcggt ggtttcccgc aatgttgcca aagtgaaagg
     4381 cgattggcat ttgagcaatc acgcccaagc agtttttggt gtcgcaccgc atcaaagcca
     4441 cacaatctgt acacgttcgg actggacggg tctgacaaat tgtgtcgaaa aaaccattac
     4501 cgacgataaa gtgattgctt cattgaccaa taccgacatc agcggcaatg tcagccttgc
     4561 cgatcacgct catttaaatc tcacagggct tgccacactc aacggcaatc ttagtgcaaa
     4621 tggcgataca cgttatacag tcagccacaa cgccacccaa aacggcgacc ttagcctcgt
     4681 gggcaatgcc caagcaacat ttaatcaagc cacattaaac ggcaacacat cggcttcggg
     4741 caatgcttca tttaatctaa gcgaccacgc cgtacaaaac ggcagtctga cgctttccgg
     4801 caacgctaag gcaaacgtaa gccattccgc actcaacggt aatgtctccc tagccgataa
     4861 ggcagtattc cattttgaaa gcagccgctt taccggacaa atcagcggca gcaaggatac
     4921 ggcattacac ttaaaagaca gcgaatggac gctgccgtca ggcacggaat taggcaattt
     4981 aaaccttgac aacgccacca ttacactcaa ttccgcctat cgccacgatg cggcaggggc
     5041 gcaaaccggc agtgcgacag atgcgccgcg ccgccgttcg cgccgttccc tattatccgt
     5101 tacacctccg gcttcggtag aatcccgttt caacacgctg acggtaaacg gcaaattgaa
     5161 cggtcaggga acattccgct ttatgtcgga actcttcggc taccgcagcg acaaattgaa
     5221 gctggcggaa agttccgaag gcacttacac cttggcggtc aacaataccg gcaacgaacc
     5281 tgcaagcctc gaacaattga cggtagtgga aggaaaagac aacaaaccgc tgtccgaaaa
     5341 ccttaatttc accctgcaaa acgaacacgt cgatgccggc gcgtggcgtt accaactcat
     5401 ccgcaaagac ggcgagttcc gcctgcataa tccggtcaaa gaacaagagc tttccgacaa
     5461 actcggcaag gcagaagcca aaaaacaggc ggaaaaagac aacgcgcaaa gccttgacgc
     5521 gctgattgcg gccgggcgcg atgccgtcga aaagacagaa agcgttgccg aaccggcccg
     5581 gcaggcaggc ggggaaaatg tcggcattat gcaggcggag gaagagaaaa aacgggtgca
     5641 ggcggataaa gacaccgcct tggcgaaaca gcgcgaagcg gaaacccggc cggc
//
LOCUS       DAXIFD010000127         5675 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.127, whole genome shotgun sequence.
ACCESSION   DAXIFD010000127 DAXIFD010000000
VERSION     DAXIFD010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5675
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.127"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(81..842)
                     /locus_tag="ACFOCN_001620"
     CDS             complement(81..842)
                     /locus_tag="ACFOCN_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970733.1"
                     /translation="MDANKEPNWEKRLENLRQTRRMKVVPTYAPLSRPSETGTDASVP
                     KLDDASRNRVLKAYLKKWQEEHNAAVADCGEEIETDPMIVLQENWLNAQASLQMSVSE
                     KHIESRRRIRFDTKKDSVEFETGQIEGGENADEAESGTNEPAVSENGENDAEETLMPV
                     QLNILNPKAVNRREVFCLSEQELTERLIKRLRPHLTDTVNGIIRTAVQKQMAVFTYQL
                     QQMLHEQAGAVVEDVLEHDVRKILNDIKYELKYKR"
     gene            942..1193
                     /locus_tag="ACFOCN_001621"
     CDS             942..1193
                     /locus_tag="ACFOCN_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970734.1"
                     /translation="MGSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPADTAEVA
                     LESIQLAFEDALAELSYEDSPHTDLFHDVTYAFFREKER"
     gene            1245..2051
                     /locus_tag="ACFOCN_001622"
     CDS             1245..2051
                     /locus_tag="ACFOCN_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6970735.1"
                     /translation="MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASN
                     AEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMS
                     GVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSDDLKNMNKVGVVTGYTGDFSVS
                     KLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMDFVTLPDF
                     TTEHYGIAVRKGDEATVKMLNDALEKVRESGEYDKIYAKYFAKEDEQAAK"
     gene            2358..3881
                     /locus_tag="ACFOCN_001623"
     CDS             2358..3881
                     /locus_tag="ACFOCN_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HFC6970736.1"
                     /translation="MTVIKQEDFIQSICDAFQFISYYHPKDYIDALYKAWQKEENPAA
                     KDAMTQILVNSRMCAENNRPICQDTGIATVFLKVGMDVQWDADMSVEEMVNEGVRRAY
                     TWEGNTLRASVLADPAGKRQNTKDNTPAVIHMSIVPGGKVEVTCAAKGGGSENKSKLA
                     MLNPSDNIVDWVLKSIPTMGAGWCPPGILGIGIGGTPEKAVLMAKESLMSHIDIQELQ
                     EKAASGAELSTTEALRLELFEKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPIAM
                     IPNCAATRHVEFELDGSGPVELTPPRVEDWPDLTYSPDNGKRVDVDKLTKEEVASWKT
                     GDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPVGDEVVGPAG
                     PTTATRMDKFTRQMLEQTGLLGMIGKSERGVATCEAIADNKAVYLMAVGGAAYLVAKA
                     IKSSKVLAFPELGMEAIYEFEVKDMPVTVAVDSKGESIHATAPRKWQAKIGIIPVES"
     gene            3979..5391
                     /gene="trkA"
                     /locus_tag="ACFOCN_001624"
     CDS             3979..5391
                     /gene="trkA"
                     /locus_tag="ACFOCN_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HFC6970737.1"
                     /translation="MKILILGNGQVGSTVAQNLAAIPNNDVTVIDIDEKALQETGSRL
                     DVQTVFGNGASPFTLERAGAEDADLLLALSRSDETNIVACKVAADLFNIPGRIARVRS
                     SEYLEYLSPKLENNENGSLSIFGITETISPEQLVTEQLAGLIDCPGALQVLRFADDRV
                     RMVIIQARRGGLLVGRSIADIAQDLPDGADCQICAVYRNNRLIVPAPQTVIIEGDEIL
                     FAAAAENIGAVIPELRPKETSTRRIMIAGGGNIGYRLAKQLEHAYNVKIIECRPRRAE
                     WIAENLDNTLVLQGSATDETLLDNEYIDEIDVFCALTNDDESNIMSALLAKNLGAKRV
                     IGIVNRSSYVDLLEGNKIDIVVSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVV
                     AHGDKKTSAIIGRRISGIKWPEGCHIAAVVRAGTGETIMGHHTETVIQDGDHIIFFVS
                     RRRILNELEKLIQVKMGFFG"
BASE COUNT         1424 a         1712 c         1383 g         1156 t
ORIGIN      
        1 ttttgcgcct gttccatgag gctttcaagt cggatgagaa tgcaaatgcc gtctgaaacg
       61 gctttcagac ggcatggcaa tcagcgtttg tattttaact cgtacttgat gtcgttgagg
      121 attttgcgga catcgtgttc caacacgtct tcgactaccg cccccgcctg ctcgtgcagc
      181 atctgctgga gctgataggt gaaaaccgcc atctgctttt gcaccgccgt tcggatgatg
      241 ccgttgacgg tatcggtcag atgggggcgc aggcgtttga tcagccgttc ggtcagctcc
      301 tgttcggaca ggcagaacac ttcgcgccgg ttgacggctt tcgggttcag gatattgagt
      361 tggacgggca tcaacgtttc ttccgcatcg ttttccccgt tttccgaaac cgccggctca
      421 ttcgtgccgg attctgcctc gtcggcgttt tccccgcctt caatctgtcc ggtttcaaat
      481 tcgacactgt cttttttggt atcaaaccgg attctccgcc gcgattcgat gtgtttttcc
      541 gaaaccgaca tttgcaggga agcctgcgcg ttgagccagt tttcctgaag gacgatcatc
      601 gggtcggttt cgatttcttc cccgcaatcg gcaacggcgg cattgtgctc ctcctgccat
      661 ttcttcagat acgcctttaa cacacggttt cggcttgcat cgtccagttt cggcacagac
      721 gcgtccgttc cggtttcaga agggcgggac agcggcgcgt aagtcggcac taccttcata
      781 cggcgcgtct gacgcaggtt ttccaaacgt ttttcccaat tcggctcttt attcgcatcc
      841 attttcggct tccggtcctt aatctttgca agcagacaaa cccgcgccca aagcgcggtt
      901 tgatataatg gcgcatttta acagattcgc gaggatacat catgggcagc atcgaacagc
      961 gtttggaata tctggaagag gcgaacgacg tgctgcgtat gcagaaccac gtcctgtcca
     1021 ccgccttcaa agccttaatc cgcgcccttc ccgccgacac cgccgaagtc gcgctcgagt
     1081 ccatccagct tgcttttgag gacgccttgg cagaattgag ctatgaggac agcccgcata
     1141 cggatttgtt ccacgacgtt acttatgcgt ttttccgtga aaaagaacgt taattttatg
     1201 ttaaactgat tttttaggct ttttgattac cgaaaggaat tttgatgaat atgaaaaaat
     1261 ggattgccgc cgcccttgcc tgttccgcac tcgcgctgtc tgcctgcggc ggtcagggca
     1321 aagatgccgc cgcgcccgcc gcaaaccccg acaaagtgta ccgcgtggct tccaacgccg
     1381 agtttgcccc ctttgaatct ttagactcga aaggcaatgt cgaaggtttc gatgtggatt
     1441 tgatgaacgc gatggcgaag gcgggcaatt ttaaaatcga attcaaacac cagccgtggg
     1501 acagcctttt ccccgccttg aacaacggcg atgcggacgt tgtgatgtcg ggcgtaacca
     1561 ttaccgacga ccgcaaacag tctatggact tcagcgaccc gtattttgaa atcacccaag
     1621 tcgtcctcgt tccgaaaggc aaaaaaatat cttcttccga cgatttgaaa aacatgaaca
     1681 aagtcggcgt ggtaaccggc tacacgggcg atttctccgt atccaaactc ttgggcaacg
     1741 acaatccgaa aatcgcgcgc tttgaaaacg ttcccctgat tatcaaagaa ctggaaaacg
     1801 gcggcttgga ttccgtggtc agcgacagcg cggtcatcgc caattatgtg aaaaacaatc
     1861 cgaccaaagg gatggacttc gttaccctgc ccgacttcac caccgaacac tacggcatcg
     1921 cggtacgcaa aggcgacgaa gcaaccgtca aaatgctgaa cgatgcgttg gaaaaagtac
     1981 gcgaaagcgg cgaatacgac aagatttacg ccaaatattt tgcaaaagaa gacgaacagg
     2041 ccgcaaaata agcccgccca tccgaacaca atgccgtctg aagccctttc agacggcatt
     2101 gttcatcaat cggcctacaa tgaactgcct gctgatttct ccctaccgca aagcaacagg
     2161 caaagattac aaatatcaaa atccgagtaa aacagtattt tattaaaaca aattgataat
     2221 caagagatta gaattatgta ttgtctttac cgtacaaacg ctggcactat ttcaacctga
     2281 taaaaaacag ccttcaaaaa ggttgcttaa aacagcagca gacacttacc gccacaacct
     2341 tgaaaaggaa cacaatcatg accgtcatca aacaggaaga ctttatccaa agcatttgcg
     2401 atgccttcca attcatcagc tactaccatc cgaaagacta catcgacgcg ctttataagg
     2461 cgtggcagaa ggaagaaaac cccgccgcca aagacgcgat gacgcagatt ttggtcaaca
     2521 gccgcatgtg tgccgaaaac aaccgcccca tctgccaaga taccggtatc gcgaccgtct
     2581 tcctcaaagt cggtatggat gtgcagtggg atgcggacat gagcgtcgaa gaaatggtta
     2641 acgaaggcgt gcgccgcgcc tacacttggg aaggcaacac cctgcgcgcc tctgtcctcg
     2701 ccgatccggc cggcaaacgt caaaacacca aagacaacac ccccgccgtc atccatatga
     2761 gcatcgtgcc gggcggtaaa gtcgaagtaa cctgcgcggc aaaaggcggc ggctctgaaa
     2821 acaaatccaa actcgccatg ctcaatcctt ccgacaacat cgtcgattgg gtattgaaaa
     2881 gcatcccaac catgggcgca ggctggtgtc ctcccggcat cttgggcatc ggcatcggcg
     2941 gcacgcccga aaaagccgtg ctgatggcaa aagagtccct gatgagccac atcgacattc
     3001 aagagttgca ggaaaaagca gcgtcaggtg cagaattgtc caccaccgaa gccctgcgcc
     3061 tcgaactctt tgaaaaagtc aacgcgctag gcatcggcgc gcaaggcttg ggcggtctga
     3121 ccaccgtgtt ggacgtgaaa atcctcgatt acccgaccca cgccgcctcc aaaccgattg
     3181 ccatgattcc gaactgcgcc gccacccgcc acgtcgaatt tgaattggac ggctcaggcc
     3241 ctgtcgaact cacgccgccg cgcgtcgaag actggcccga tttgacttac agccccgaca
     3301 acggcaaacg cgtcgatgtc gacaagctga ccaaagaaga agtggcaagc tggaaaaccg
     3361 gcgacgtatt gctgttgaac ggcaaaatcc tcaccggccg cgatgccgca cacaaacgcc
     3421 tcgtcgatat gctcaacaaa ggcgaagaat tgcccgtcga tttcaccaac cgcctgattt
     3481 actacgtcgg ccccgtcgat ccggtcggcg atgaagtcgt cggtccggca ggtccgacca
     3541 cagccacccg catggacaaa ttcacccgcc aaatgctcga acaaaccggc ctcttgggca
     3601 tgatcggcaa atccgagcgc ggcgtggcca cctgcgaagc catcgccgac aacaaagccg
     3661 tgtacctcat ggcagtcggc ggcgcggcgt atctcgtggc aaaagccatc aaatcttcca
     3721 aagtcttggc gttccccgaa ttgggcatgg aagccattta cgaatttgaa gtcaaagaca
     3781 tgcccgtaac cgtcgccgta gatagcaaag gcgaatccat ccacgccacc gccccgcgca
     3841 aatggcaggc gaaaatcggc atcatccccg tcgaatcttg aggcgccatg ccgtctgaac
     3901 acaaaatctg ccttcagacg gcatttccgc ccccggttgc ggtacaatcc accatttcat
     3961 cactcggcga cccacaccgt gaaaatcctc attttaggca acggacaggt aggttctacc
     4021 gtcgcacaaa accttgccgc catacccaac aacgacgtaa ccgttatcga catcgacgaa
     4081 aaagcattgc aggaaacagg cagccgcctc gatgtccaaa ccgttttcgg caacggcgca
     4141 tcccccttca cattagaacg cgccggcgcg gaagatgccg acttgctgct cgcgctctcc
     4201 cgcagcgacg aaaccaacat cgtcgcctgc aaagttgccg ccgacctgtt caacatcccc
     4261 ggccgcatcg cgcgcgtccg ttccagcgaa tacctcgaat acctcagccc caagctcgaa
     4321 aacaacgaaa acggcagcct ttccatattc ggcataaccg aaaccatcag ccccgaacag
     4381 ctcgttaccg aacagcttgc cggcctgata gactgcccgg gcgcattgca ggttttacgt
     4441 tttgcagacg accgcgtgcg gatggtcatc atacaggcgc ggcgcggcgg actgcttgtc
     4501 ggacgcagca ttgccgacat cgcccaagat ttgcccgacg gggccgactg ccaaatctgc
     4561 gccgtttacc gcaacaaccg cctcatcgtc cccgcgccgc aaaccgtcat catcgaaggc
     4621 gacgaaatcc tatttgccgc cgccgccgaa aacatcggcg cggtcatacc cgaattgcgc
     4681 cccaaagaaa ccagcacccg ccgcatcatg attgccggcg gcggcaacat cggctaccgt
     4741 ctcgccaagc agctcgaaca cgcatacaac gtcaaaatca tcgaatgccg gccgcgccgt
     4801 gccgaatgga tagccgaaaa cctcgacaac accctcgtcc tgcaaggttc ggcaaccgac
     4861 gaaaccctgc tcgacaacga atacatcgac gaaatcgacg tattctgcgc cctgaccaac
     4921 gacgacgaaa gcaacattat gtccgccctt ttggcgaaaa acctcggcgc gaagcgcgtc
     4981 atcggcatcg tcaaccgctc aagctacgtc gatttgctcg aaggcaacaa aatcgacatc
     5041 gtcgtctccc cccacctcat caccatcggc tcgatactcg cccacatccg gcgcggcgac
     5101 atcgttgccg tccaccccat ccggcgcggc acggcggaag ccatcgaagt cgtcgcacac
     5161 ggcgacaaaa aaacttccgc catcatcggc aggcgcatca gcggcatcaa atggcccgaa
     5221 ggctgccaca ttgccgccgt cgtccgcgcc ggaaccggcg aaaccattat gggacaccat
     5281 accgaaaccg tcatccaaga cggcgaccac atcatctttt tcgtctcgcg ccggcgcatc
     5341 ctgaacgaac tggaaaaact catccaggtc aaaatgggct ttttcggata aaccgcccca
     5401 ttccggacat attgccgcca agcggtatgg aagcggaata atggtaggtg ggcttcagac
     5461 ggcatccgcc ctccccgtca ttcccgcgta agcgggaatc cagaccttgg gatagcggca
     5521 atattcaaag gttataaaag acccgtcatt cccgcgcagg cgggaatcca gaccttggga
     5581 tagcggcaat attcaaaggt tagctgaagc tttagagatt ctagattccc gtttccacgg
     5641 gaatgacgaa aggttgcggg aatccaaacc attgg
//
LOCUS       DAXIFD010000128         5666 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.128, whole genome shotgun sequence.
ACCESSION   DAXIFD010000128 DAXIFD010000000
VERSION     DAXIFD010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5666
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.128"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(231..2027)
                     /locus_tag="ACFOCN_001625"
     CDS             complement(231..2027)
                     /locus_tag="ACFOCN_001625"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HFC6970738.1"
                     /translation="MNTVSNYLSALREAMKAQGLDALVIPSADPHLSEYLPAHWQARR
                     ELSGFTGSVGTFVVTADEAGVWVDSRYWEQAAKQLAGSGIELQKSGQVPPYNEWLAAN
                     LPENAAVGIPSDMVSLTGKRTLAQSLTAKNIRIEHPNDLLDQVWTSRPAIPAETVFIH
                     DPAYVSETAAEKLARVRAVMAEKGADYHLVSSLDDIAWLTNLRGSDVPFNPVFVSFLL
                     IGKDNAVLFTDRCRLNAEAAAALQTAGITVEPYAQVADKLAQIGGALLIEPNKTAVST
                     LVRLPESVRLIEGINPSTLFKSCKSEADIARIREAMEHDGAALCGFFAEFEDIIGNGG
                     SLTEIDVDTMLYRHRSVRPGFISLSFDTIAGFNANGALPHYSATPESHSTISGNGLLL
                     IDSGAQYKGGTTDITRVVPVGTPTAEQKRDNTLVLKAHIALAEAVFPENIPSPLIDAI
                     CRKPLWQAQCDYGHGTGHGVGYFLNVHEGPQRIAFAAPATPETAMKKGMVTSIEPGLY
                     RPGKWGIRIENLAANQAVAAPQETEFGSFLCFETLTLCPIDTRLMDTALMTDGEIDWV
                     NRYHAEVRRRLEPLTEGAAKAWLIKRTEPLAR"
     gene            2485..3738
                     /locus_tag="ACFOCN_001626"
     CDS             2485..3738
                     /locus_tag="ACFOCN_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6970739.1"
                     /translation="MSEQHISTWKSKINALGPGIMMASAAVGGSHLIASTQAGALYGW
                     QIALIIILTNLFKYPFFRFSAHYTLDTGKSLIEGYAEKSRVYLWVFLILCILSATINA
                     GAVAIVTAAIVKMAIPSLMFDAGTVAALIMASCLIILVSGRYRALDRVSKIIIVTLSI
                     ATLAAAGIAMSRGMQMQPDFIEPTPWTLAGLGFLIALMGWMPAPIEISAINSLWVTEK
                     QRINPSEYRDGIFDFNVGYIASAVLALVFLALGAFVQYGNGEAVQMAGGKYIGQLINM
                     YAVTIGGWSRPLVAFIAFACMYGTTITVVDGYARAIAEPVRLLRGKDKTGNAEFFAWN
                     IWVAGSGLAVIFWFDGVMANLLKFAMIAAFVSAPVFAWLNYRLVKGDEKHKLTSGMNA
                     LALAGLIYLTGFTVLFLLNLAGMFK"
     gene            3893..5404
                     /gene="lysS"
                     /locus_tag="ACFOCN_001627"
     CDS             3893..5404
                     /gene="lysS"
                     /locus_tag="ACFOCN_001627"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HFC6970740.1"
                     /translation="MSEQNHPQTEPQLDENQIIALRREKLHNIRQQRNAYPNDFKRDS
                     FAADLHAQYGEIGKEELDPQGIPVKVAGRMMLKRQMGKASFATIQDVSGQIQLYLNNK
                     GVSQEVLDDFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLS
                     DQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGAT
                     AKPFVTHHNALDIPLYLRIAPELYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTM
                     IEFYEAFSDYERMMQMAEDIIRNASRTVNGTANITYNGKEVDLESPFERLTILEAIKK
                     YNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIIDY
                     PVEVSPLARASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKAQVAQKDAGD
                     DEAMHYDADYIRAMEFGLPPTGGCGIGIDRLVMLLTDSQTIRDVILFPQMRPE"
BASE COUNT         1232 a         1438 c         1649 g         1347 t
ORIGIN      
        1 accagtacgg cgttgcctcg ccttagctca aagagaacga ttctctaagg tgctgaagca
       61 ccgagtgaat cggttccgta ctattcgtac tgtctgcggc ttcgtcgcct tgtcctgatt
      121 tttgttaatc cactatattt gcttgcggca agatgaaaac ggtgcgggat gttttgggaa
      181 accaatgccg tctgaagggc tttcagacgg cattttttgc gccgtgctgt ttaacgcgcc
      241 agcggttcgg tgcgtttgat cagccacgct tttgccgcgc cttcggtcag cggctcgagg
      301 cggcggcgga cttcggcgtg gtagcggttg acccagtcga tttcgccgtc ggtcatgagg
      361 gcggtgtcca tcaggcgggt gtcgatgggg cagagggtca gggtttcaaa acagaggaag
      421 ctgccgaatt cggtttcttg aggggcggcg acggcttggt tggcggcaag gttttcaatg
      481 cggatgcccc attttcccgg gcggtagagt ccgggttcga tggaggtaac catgcctttt
      541 ttcatggcgg tttcgggcgt ggcgggggcg gcgaaggcga tgcgctgcgg gccttcgtgg
      601 acgttgagga aatagcctac gccgtgtccg gtgccgtggc cgtagtcgca ttgcgcctgc
      661 cacaggggtt tgcggcaaat cgcatcaatc agcggcgagg ggatgttttc tgggaacacg
      721 gcttcggcaa gcgcgatatg ggctttgaga acgagggtgt tgtcgcgttt ttgttcggcg
      781 gtgggtgtgc cgacagggac gacgcgggtg atgtcggtcg tgccgccttt gtattgcgcg
      841 ccggagtcga tgagcaaaag cccgttgccg ctgatggtgc tgtggctttc gggcgttgcg
      901 ctgtaatgcg gcagtgcgcc gttggcgttg aagcctgcga tggtgtcgaa actcaatgaa
      961 atgaagcctg ggcgcacgct gcggtggcga taaagcatgg tgtccacgtc gatttcggtc
     1021 aggctgccgc cgttgccgat gatgtcttca aactcggcga agaaaccgca caacgccgcg
     1081 ccgtcgtgtt ccatcgcttc gcggatgcgg gcgatgtcgg cttcggattt gcaggatttg
     1141 aacagcgtgg acgggttgat tccctcgata aggcgcacgc tttcgggcag gcgcacaagc
     1201 gtgctgacgg cggttttgtt cggttcgata agcaacgcgc cgccgatttg cgcgagtttg
     1261 tcggcaactt gggcgtaagg ctcgaccgtg atgcctgcgg tttgcagcgc ggcggcggct
     1321 tcggcgttca gacggcatcg gtcggtaaac aggacggcgt tgtctttgcc gatcagcagg
     1381 aaggacacga aaacagggtt gaaaggtacg tcgctgccgc gcaggttggt cagccaggcg
     1441 atgtcgtcaa gcgaggaaac caagtggtaa tccgcgcctt tttccgccat cacggcgcgc
     1501 acgcgggcga gtttttcggc ggcggtttcg gagacgtagg cggggtcgtg gatgaacacg
     1561 gtttcggcgg ggatagcggg acggcttgtc cacacttggt caagcagatc gtttgggtgt
     1621 tcgatgcgga tgtttttggc ggtcagggat tgcgccaaag tgcgtttgcc ggtgagcgag
     1681 accatatcgg aagggatgcc gacggcggcg ttttcgggca ggtttgccgc gagccattcg
     1741 ttatacggcg gcacttgccc gcttttttgc agttcgatgc cgctgcccgc aagctgtttg
     1801 gcggcttgtt cccaatagcg gctgtccacc catacgcccg cttcatcggc ggtaacgacg
     1861 aatgtgccga ccgagccggt aaagcccgac aattcgcggc gcgcctgcca gtgtgcgggc
     1921 aggtattcgg acaggtgggg gtcggcggaa gggatgacga gcgcgtccaa gccttgcgcc
     1981 ttcatggctt cgcgcaatgc ggacaggtaa ttcgatacgg tattcataat aattcctcca
     2041 atcgggtttt gcggcttcag acggcatgga cggaaatctg aaatgccgtc tgaaaaacat
     2101 aaccatctta tcaaatcgcc agcctgctgc aaaacggacg ggctgatcgg atggtgcgtg
     2161 tttgcgcgaa aaaagcgatg taaggttgtt tgttgtaaaa ttttaggcat aaaatgtcgt
     2221 ttcatgcctt tttttggaag taatacggaa aatatagtca agtttgagca tgaagttcta
     2281 atagtgtgtg ttggcaggta tttggattac gttacaatac gcgctttcat caaaatttcc
     2341 ctaccgggcg gtatcctgtt tttgaagacg gtaggatttg ggtttgtttg ggggcaatcc
     2401 cgcccaaatt ggagcaatag atagggctgt gtccgaatat gcggctctgt gtgttgaaac
     2461 acggttaaaa atacggaaga ctttatgtcc gaacaacata tttcgacttg gaaaagtaaa
     2521 atcaacgcac tggggccggg gattatgatg gcttcggcgg cggtcggcgg ttcgcacctg
     2581 attgcctcga cgcaggcggg tgcgctttac ggctggcaga tcgcgctcat catcatcctg
     2641 accaacctct tcaaataccc gtttttccgc ttcagcgcgc attacacgct ggacacgggc
     2701 aagagcctga ttgaaggtta tgccgagaaa agccgcgttt atttgtgggt attcctgatt
     2761 ttgtgcatcc tctccgccac gattaacgcg ggcgcggtcg ccattgtaac cgccgccatc
     2821 gtcaaaatgg cgattccctc gctgatgttt gatgccggca cggttgccgc cttgattatg
     2881 gcatcctgcc tgattatttt ggtgagcgga cgttaccgcg ctttggatcg cgtttccaaa
     2941 atcatcatcg ttactttgag tatcgccacg cttgccgccg ccggcatcgc tatgtcgcgc
     3001 ggtatgcaga tgcagcccga ttttatcgag ccgacaccgt ggacgcttgc cggtttgggc
     3061 ttcctgatcg cgctgatggg ctggatgccc gcgccgattg aaatttccgc catcaattct
     3121 ttgtgggtaa ccgaaaaaca acgcatcaat ccttccgaat accgcgacgg gatttttgat
     3181 ttcaacgtcg gttatatcgc cagtgcggtt ttggctttgg ttttccttgc actgggtgcg
     3241 tttgtgcaat acggcaatgg cgaagcagtg cagatggcgg gcggcaaata tatcgggcaa
     3301 ttgatcaata tgtacgccgt taccatcggc ggctggtcgc gcccgctggt ggcgtttatc
     3361 gcgtttgcct gtatgtacgg cacgacgatt accgttgtgg acggctatgc ccgtgccatt
     3421 gccgaacccg tgcgcctgct gcgcggaaaa gacaaaacgg gcaacgccga attctttgcc
     3481 tggaatattt gggtggcggg cagcggtttg gcggtgattt tttggtttga cggcgtaatg
     3541 gcgaatctgc tcaaatttgc gatgattgcc gcttttgtgt ccgcccctgt gtttgcctgg
     3601 ctgaattacc gtttggtcaa aggtgatgaa aaacacaaac tcacatcagg tatgaatgcc
     3661 cttgcattgg caggcttgat ttatctgacc ggttttaccg ttttgttctt attgaatttg
     3721 gcgggaatgt tcaaatgata acgatgccgt ctgaaaccgc aaaccgcttt cagacggcat
     3781 tgtcgcgttt atggaaaaaa atgccgacat cgcgtaaaat atgcgcaaat tttgtgattc
     3841 ggtcaggtcg tctgaaacag attgcgcctg atttattttt tcggaaaacc ctatgagcga
     3901 acaaaaccat ccgcaaaccg agccgcagtt ggacgaaaac caaatcatcg ccctgcgccg
     3961 cgaaaaactg cacaacatcc gccaacagcg caacgcctat cccaacgact tcaaacgcga
     4021 cagcttcgcc gccgatttgc acgcccaata cggcgaaatc ggcaaagaag aactcgatcc
     4081 gcaaggcatt cccgtcaaag tggccggccg catgatgctg aagcgtcaaa tgggcaaggc
     4141 gagctttgcc accattcaag acgtgtccgg gcaaatccag ctttatctga acaacaaagg
     4201 cgtgagccaa gaagttttgg acgacttcaa ccattgggat ttgggcgaca tcgtcggcgc
     4261 ggaaggcact ttgttcaaaa ccaaccacgg cgaactgacc gtacgcgtgt ccgacatccg
     4321 cctgttgtcc aaatccttgc gtccgctgcc ggacaaacac aaaggcttga gcgatcagga
     4381 aaccaaatac cgccaacgct atgtcgattt gattgccaac gaagaatcgc gcaatacctt
     4441 tatcaaacgc agccaaatca tccaatccgt gcgtaatttt atggtgggcg agcattatct
     4501 cgaagtcgaa accccgatga tgcacccgat tcccggcggc gcgacggcaa aacccttcgt
     4561 tactcatcac aatgccttag atattccgct ttacctgcgt atcgcgcctg agctgtattt
     4621 gaaacgcctg gttgtcggcg gcttggaacg cgtgtttgaa atcaaccgca gcttccgcaa
     4681 cgaaggcatg tccgtgcgcc acaaccccga atttacgatg attgaatttt acgaagcctt
     4741 ctccgactac gaacgtatga tgcagatggc ggaagacatc atccgcaacg catcgcgcac
     4801 agtaaacggt acggcaaaca tcacttacaa tggcaaagaa gtcgatttgg aaagcccgtt
     4861 cgagcgtctg accatcctcg aagccatcaa aaaatacaat ccgcactaca ccgacgagca
     4921 gttgaacgat gcggaatggc tgaaaaaaga aatcgtcaaa cacggtgaaa gcctgccgcc
     4981 gtccccgggc atcggcagcc tgcaactcgc gctgtttgaa ggttgcgccg agggcaagct
     5041 gtggaacccg actttcatca tcgattaccc ggtcgaagtt tccccgttgg cgcgcgcttc
     5101 ggataccaaa caaggtctga ccgaacgttt cgaattgttc gttgtcggcc gcgaactggc
     5161 aaacggctat tccgagttga acgaccccga agaccaagcc gaacgcttca aagcgcaagt
     5221 ggcgcaaaaa gacgcgggcg acgacgaagc gatgcactac gatgccgact acatccgcgc
     5281 gatggagttc ggtctgccgc cgactggcgg ttgcggtatc ggcatcgacc gcttggtaat
     5341 gttgctgacc gattcgcaaa ccatccgtga cgtgattctg ttcccgcaga tgcgccccga
     5401 gtaatcataa aaacagttga aatggcaatg ccgtctgaac ccgattggat tcagacggca
     5461 ttttgtatgg caggattgat agtgaattaa caaaaatcag gacaaggcgg cgagccgcag
     5521 acggtacaaa tagtacggaa ccaattcact tggtgcttca gcaccttaga gaatcgttct
     5581 ctttgagcta aggcgagcca acgctgtacc ggtttaaatt taattcacta tattcggttt
     5641 ccaactgacc gacccattct gacaag
//
LOCUS       DAXIFD010000129         5451 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.129, whole genome shotgun sequence.
ACCESSION   DAXIFD010000129 DAXIFD010000000
VERSION     DAXIFD010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5451
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.129"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(170..3001)
                     /gene="lbpA"
                     /locus_tag="ACFOCN_001628"
                     /gene_synonym="tbpA"
     CDS             complement(170..3001)
                     /gene="lbpA"
                     /locus_tag="ACFOCN_001628"
                     /gene_synonym="tbpA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin-binding protein LbpA"
                     /protein_id="HFC6970741.1"
                     /translation="MNKKHGFQLTLTALAVAAAFPSYAANPETAAPDAAQTQSLKEVT
                     VRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYS
                     IRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAG
                     SSDHGSGALGGAVAFRTKEAADLISDGKSWGIQAKTAYGSKNRQFMKSLGAGFSKDGW
                     EGLLIRTERQGRETHPHGDIADGVAYGINRLDAFRQTYGIKKPSEGGEYFLAEGESEL
                     KPVAKVAGNGNYLNNQLNRWVKERIEQNQPLSAEEEAMVREAQARHENLSAQAYTGGG
                     RILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDEAKKF
                     RDKSGVYDGDDFRDGLYFVPNIEEWKGDQKLIRGIGLKYSRTKFIDEHHRRRRMGLLY
                     RYENEKYSDNWADKAVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSS
                     DRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASNAISRPEQLSHNAARISEYS
                     DYTDKGDKYLLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYFD
                     FSLGGRYDRKNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSLSYRASSGFRTPSFQE
                     LFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVADH
                     KTKLPNQAGQLTEIDIRDYYNAQNMSLQGVNILGKIDWNGVYGKLPEGLYTTLAYNRI
                     KPKSVSNRPGLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELAY
                     LAGDQKRYSTKRASSSWSTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAES
                     TANRHGGDSNYGRYAAPGRNFSLALEMKF"
     gene            complement(2998..5175)
                     /locus_tag="ACFOCN_001629"
     CDS             complement(2998..5175)
                     /locus_tag="ACFOCN_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6970742.1"
                     /translation="MCKPNYGGIVLLPLLLASCIGGNFGVQPVVESTPTAYPVTFKSK
                     DVPTPPPAKPSIEITPVNRPAVGAAMRLPRRNTAFHREDGTEIPNSKQAEEKLSFQEG
                     DVLFLYGSKGNKLQQLKSEIHKRDSDVEIRTSEKENKKYDYKFVDAGYVYVKGKDEIK
                     WTSDYKQFSNRLGYDGFVYYSGERPSQSLPSAGTVEYSGNWQYMTDAKRHRAGKAVGI
                     DNLGYYTFYGNDVGATSYAAKDVDEREKHPAKYTVDFGNKTLTGELIKNQYVKPSEKQ
                     KPLTIYNITADLNGNRFTGSAKVNPDLAKSHANKEHLFFHADADQRLEGGFFGDKGEE
                     LAGRFISNDNSVFGVFAGKQNSPVPSGKHTKILDSLKISVDEASGENPRPFAISPMPD
                     FGHPDKLLVEGHEIPLVSQEKTIELADGRKMTVSACCDFLTYVKLGRIKTERPAAKPK
                     AQDEEDSDIDNGEESEDEIGDEEEGTEDAAAGDEGSEEDEATENEDGEEDEAEEPEEE
                     SSAEGNGSSNAILPVPEASKGRDIDLFLKGIRTAETNIPQTGEARYTGTWEARIGKPI
                     QWDNHADKEAAKAVFTVDFGKKSISGTLTEKNGVEPAFRIENGVIEGNGFHATARTRD
                     DGIDLSGQGSTKPQIFKANDLRVEGGFYGPKAEELGGIIFNNDGKSLGITEGTENKVE
                     ADVDVDVDVDVDADADVEQLKPEVKPQFGVVFGAKKDNKEVEK"
BASE COUNT         1188 a         1468 c         1250 g         1545 t
ORIGIN      
        1 tcagtcattt ccgataaatt gccttagcat tgaatgtcta gattcccgcc tgcgcgggaa
       61 tgacggcgga aatcttgttt atatcgaatc aaaaaaacct gcaccttaat cagttggcgg
      121 tttagtccga cttttggggt gcagatcaag ctttcagacg gtatttcctt taaaacttca
      181 tttcgagcgc gagactgaag ttcctgcccg gtgcggcata ccttccatag ttgctgtcgc
      241 cgccgtgccg gtttgccgtg ctttccgcgg tctggcgcaa ggattcccaa gtaacgtagc
      301 ggtagttgcc gatattgtag atagccgccc tcaaggtcag ccgttttttc agattcagat
      361 aggcggaaac gtctgccgtc gaccaagaag acgacgctct ttttgtcgaa tatcgttttt
      421 gatcgcctgc cagataagca agctcgtcag ggtttttccc tttggaatag gtcagcataa
      481 tgtttgcgcc ccatttcccc tcgggctggt cgtatccgaa ccccaaaaca taacgcgacg
      541 gctgtaccgc atccaaagca tagctgcgga gagacagtcc cggccggttg gataccgatt
      601 tcggtttgat acggttgtac gccaaagtcg tgtacaaacc ttcgggcagt ttgccgtaca
      661 caccgttcca gtcgattttt cccaatatat taacgccttg gagcgacata ttttgggcat
      721 tgtaataatc gcgtatatca atctctgtca attgtcctgc ctgattcggc aatttggttt
      781 tgtgatcggc aacggcaatc atatcggtat aacggttgcg gaagctgctg atttccaaaa
      841 agccgaaatc gcccttccac tgcaaaccga tttcgcggtt ggctgccttt tccgatttca
      901 gggcgggacg ctgccagcct ttcggataat cgtgataaat gtctatcccg aaaagttctt
      961 ggaatgaggg cgttctgaag ccgctggagg cgcggtaaga caaagaaaaa tgccggttcg
     1021 gtttgaacac gatgccgctg ttccacgaac ggtcaacata ccgcccgctg cggacgagtt
     1081 cttccgacgt ggtgaagttt ttccggtcgt acctgccgcc caagctgaaa tcgaaatatt
     1141 tgccgattga aaaacggtcg ttcaaagaaa tgtggatatt gctgccgttg atttttcttg
     1201 gcacgcattt gcgggaacgc agggtttcga tgtagccgca gaccgaccct tcgacgactt
     1261 cgggcttacc caaaagatac ttgtctccct tatcggtgta atccgagtat tccgaaatcc
     1321 ttgccgcatt gtgagaaagc tgttcggggc gggaaatcgc gttggaagca tcgtaaccga
     1381 agcccaaagt cagatggtgt ttcgtccatt tgtttttcag cgatttctca aacgaggcat
     1441 tcaaaacatt gtgctgttcg cggtagtgga aacggtcgct gctgtcgtag gaatacggtt
     1501 tgtccgccga cgcgcggcag gatttgtcca cggcaggata cacggcgcaa ttcagcttca
     1561 gcgtgttgtt gtcggttgcc acgccctgtt tgtcaaacga caacaccgcc ttatccgccc
     1621 agttatccga gtatttctca ttttcataac ggtacagcaa acccatacgg cggcggcggt
     1681 gatgttcgtc aataaatttg gtgcgggaat atttcaaacc tatgccccta atcaactttt
     1741 gatcgccctt ccactcttct atattcggca caaaatacaa gccgtcgcgg aaatcgtcgc
     1801 cgtcgtacac cccgctcttg tctctaaact ttttcgcctc gtccgtaccg taatactgtt
     1861 tttccgtcat atcgcggata tcgtaacgct gtttggtatc ctcaaacacg ccgccgacat
     1921 aatgcctgcc gccgaagcgg tagcccagct tggcaagcca cgaaccgctg cggtaatcca
     1981 tcggatcggg caatatcctg ccgccgcccg tgtaagcttg ggcggacagg ttttcgtggc
     2041 gcgcctgcgc ctcccgcacc atcgcttctt cttcagcact taaaggctga ttttgttcaa
     2101 tacgttcttt tacccagcgg ttgagctggt tgttcaaata gtttccgttg cctgccactt
     2161 ttgccacagg cttgagctca ctctcgccct ccgccaggaa atattcccct ccttcacttg
     2221 gttttttaat gccgtatgtc tggcggaacg cgtccaaacg gtttatgccg tatgccaccc
     2281 catccgcaat atcgccgtgc gggtgcgttt cccgcccctg acgttcggtt cggattagca
     2341 gcccttccca accgtcttta ctgaaacccg cgccgagcga cttcataaat tggcggtttt
     2401 tactgccgta ggcggttttt gcctgtatcc cccagctttt gccgtctgaa atcaggtctg
     2461 ccgcctcttt ggtgcggaaa gcgaccgcgc cgccgagtgc gccgctgccg tgatcggacg
     2521 aaccggcacc tttgtcgatt tccaccgtgc tgatgttttc atattcgatt tcgttgattg
     2581 caccgctgcc gccgcgtccg ccgtatccgc tcaacgatcc ctgcacggta aacgcctgta
     2641 tttgggcaac gccgtcaacc gaaaccgcca cacggttttt atccacgccg cgtatcgagt
     2701 agccgccgct cgcgccgttg ccctgttcga caaccgccac gcccggatcg tagcgcgtca
     2761 ggtcgcggat accgagtacc tgttctttgt tcaacgtttc cgacgttttg acgattttgc
     2821 ccaaaccggt cgcctctttc gatcgccgtc ccactttggc agcacggacg gtaacctctt
     2881 tcagggattg ggtctgcgcc gcatcaggtg ccgccgtttc agggtttgcc gcatatgacg
     2941 ggaaggcggc ggcaacagcc aaggcagtca gggtaagctg aaaaccgtgt ttcttattca
     3001 tttttccacc tctttattat ctttcttcgc accgaatacc acgccgaatt ggggtttaac
     3061 ttcaggtttt aactgttcaa catcagcatc agcatcaaca tcaacatcaa catcaacatc
     3121 aacatcagct tcaactttat tttcagtacc ttcagttata ccaagagatt tcccatcatt
     3181 attgaaaata ataccgccca attcctccgc cttcgggccg taaaatcctc cttctacacg
     3241 aagatcatta gctttgaaga tctgcggttt ggtcgaaccc tgcccggaaa ggtcgatgcc
     3301 gtcatcccga gtgcgcgctg tcgcatggaa accgttgccc tcaatcacgc cgttttcaat
     3361 acggaaagca ggttctacac cgtttttctc cgtcagcgtt ccggaaatcg atttcttgcc
     3421 gaaatcaacg gtaaatactg cttttgccgc ttctttatcc gcatgattgt cccattgaat
     3481 gggtttgccg atacgcgctt cccaagtgcc ggtatagcgt gcttctccag tttgcggaat
     3541 attcgtttct gccgtgcgga tacctttcag gaaaaggtcg atatccctgc ctttagaggc
     3601 ttccgggaca ggcaggatgg cgtttgaact gccgttgcct tctgccgacg attcttcttc
     3661 aggttcttca gcttcgtctt cttcgccgtc ttcgttttct gtggcttcgt cttcttcgct
     3721 gccttcatct cctgcggctg catcttcggt gccttcttct tcatcgccga tttcgtcttc
     3781 gctttcttcg ccattatcaa tgtccgaatc ctcttcgtcc tgcgccttcg gtttggcggc
     3841 ggggcgttcg gtttttatcc gtccgagttt cacataggtc aaaaagtcgc aacaagcact
     3901 gacggtcatt ttcctgccgt cggcaagctc gatggttttc tcttggctaa ccaaaggaat
     3961 ttcatgccct tcgacaagaa gtttgtcggg atgaccaaaa tcgggcatag gagaaatggc
     4021 aaacggtcgg ggattttcac cacttgcctc atcaacggaa attttcagag aatccaagat
     4081 tttggtgtgt tttccagacg gcacggggct attttgtttg cctgcgaata caccgaatac
     4141 gctgttgtcg ttgctgataa accgtccggc aagctcttcc cccttatcgc cgaaaaaacc
     4201 gccctcaagc cgctgatcgg catcggcatg gaaaaacaaa tgctccttat tggcatggct
     4261 tttcgctaaa tcaggattga ccttggcact gccggtaaag cggttgccgt ttaaatcggc
     4321 agtgatgttg taaatggtca gcggtttttg cttctcactg ggtttgacat attggttttt
     4381 aatcagctcg cccgtcaggg ttttgttacc gaaatctacc gtatatttag caggatgttt
     4441 ttccctttcg tcgacatcct tagccgcata agaagttgca ccaacatcgt taccataaaa
     4501 tgtgtaataa cccaaattgt caatgccaac cgccttacct gctcgatgac gtttggcatc
     4561 ggtcatatat tgccagttac cagaatattc caccgttccc gcactcggta aagattggga
     4621 aggacgttct ccggaataat atacaaaacc gtcataacct aagcggttgg aaaactgctt
     4681 gtaatctgaa gtccacttaa tttcatcttt tccctttaca tatacataac ctgcatctac
     4741 aaatttataa tcatattttt tattttcctt ttctgatgtc ctaatttcta catcggaatc
     4801 acgtttatga atttcgcttt taagttgttg aagtttattt ccttttgaac cgtataaaaa
     4861 cagaacatca ccttcttgaa acgacagctt ttcttctgct tgtttgctat ttggaatttc
     4921 cgtgccatct tcacgatgaa aagcagtatt ccgccttggc agccgcattg ccgcaccgac
     4981 ggcgggccgg ttgaccggcg tgatttctat agaaggtttg gcagggggcg gagtgggaac
     5041 gtccttagac ttgaaagtga cggggtacgc ggtcggcgtt gattcgacaa caggctgcac
     5101 gccgaaattg ccgccgatac aagatgccaa aagtaagggc aacaagacaa tgccgccata
     5161 attcggttta cacatcccta cttttcctcc tatttgatta ataataatta tcattatatt
     5221 aatatgtaca gataatatca acccgttttt atagtgaatt aacaaaaatc aggacaaggc
     5281 gacgagccgc agacagtaca gatacattcc gtcattccca cgaacctaca ttccgtcatt
     5341 cccacgaacc tgcaccacgt cattcccacg aaagtgggaa tccagttcgt tcggtttcgc
     5401 ttgttttaag tttcgggtaa cttctacttc gtcattccca cgaacctgca t
//
LOCUS       DAXIFD010000130         5413 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.130, whole genome shotgun sequence.
ACCESSION   DAXIFD010000130 DAXIFD010000000
VERSION     DAXIFD010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.130"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..959
                     /locus_tag="ACFOCN_001630"
     CDS             <1..959
                     /locus_tag="ACFOCN_001630"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HFC6970743.1"
                     /translation="TGYVLSNRRGTRVCVLDLGGIVQEFSVLADGVRENLVVSFDDAA
                     SYADNPFQINKQIGRVAGRIRGAAFDINGRTYRVEANEGRNALHGGSHGLAVTRFNAV
                     AADGRSVVLRSRLQQSADGYPNDLDLDISYRLDEDNRLTVSYRATALGDTVFDPTLHI
                     YWRLDAGLHDAVLHIPQGGHIPADAEKLPVSTVSDDLEVFDFSRPKPLDAAVAALRRE
                     TGRAGFDDAYRVPSDIGRPAAVLQAGRRRRISIYSDRNGLVIFTAAPQDFARHDAGVY
                     DALATEAQTLPDSLNWPEFGNIRLNKGDTREATIAYGIESLS"
     gene            1193..3451
                     /locus_tag="ACFOCN_001631"
     CDS             1193..3451
                     /locus_tag="ACFOCN_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HFC6970744.1"
                     /translation="MYTRIMEISPWTLRSAKLEKEHKRLQESLTSLGNGYMGMRGSFE
                     ETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINALNFSKVKIFVDGQEVDL
                     AKNDVAGFSVELDMQHGVLRRSFTVFGVRFDVCKFLSVAQKELALIRWEAVSIDGKTH
                     QVRIDSIIDADVKNEDSNYEEKFWQVLDKGVSDDRSYIATQTVTNPFGVEQFIVNAEQ
                     TFAGSFKALGGSQTDWQVSNSFEAEVGGTPKTFEKRVIVTTSRDYQGLEAVKAAGRAL
                     SEKVAGVAFETLLDAHKAGWLHRWEIADVVIEGSDEAQQGIRFNLFQLFSTYYGEDAR
                     LNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPEVTRNLLQYRRNQLPQAQHNARE
                     QGLAGALYPMVTFTGIECHNEWEITFEEIHRNGAIPYAIYNYTNYTGDEGYLAKEGLE
                     VLVEVSRFWADRVHFSKRNGKYMIHGVTGPNEYENNINNNWYTNTLAAWVLDYTREAL
                     AKYPRPDLNVRAAELEKWADISANMYRPHDEELGVFVQHDGFLDKDIRPVSALSPDDL
                     PLNQKWSWDKILRSPFIKQADVLQGIYFFGDRFNIDEKRRNFDFYEPMTVHESSLSPC
                     IHSILAAELGKEEKAVEMYRRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQGFAQMK
                     TWGGKLSFAPFLPSAWTGYAFHINYRGRLIKVAVGKENVVFTLLKGEPLDLQVYGKDI
                     TLNGSHTAALEK"
     gene            3464..4129
                     /gene="pgmB"
                     /locus_tag="ACFOCN_001632"
     CDS             3464..4129
                     /gene="pgmB"
                     /locus_tag="ACFOCN_001632"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008801 - beta-phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HFC6970745.1"
                     /translation="MTFTAVLFDLDGVITDTAEYHYRAWKKLAEELGISIDRKFNEQL
                     KGVSRDDSLKRILAHGGKTVSEAEFAELTRRKNDNYVEMIQAVKPEDVYPGILPLLET
                     LKANGKKIALASASKNGPFLLERMGLTHFFDTVADPAAVAHSKPAPDIFLAAAEGVGA
                     DIRRCIGIEDAAAGVAAIKASGALPIGVGKAEDLGSDIPLVSGTAELTYAYLQNVWAQ
                     SGR"
     gene            complement(4339..5346)
                     /locus_tag="ACFOCN_001633"
     CDS             complement(4339..5346)
                     /locus_tag="ACFOCN_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HFC6970746.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQKTR
                     YLRDHRGRPACPLLSMFKAILLGQWHSLSDPELEHSLITRIDFNLFCRFDELIIPDYS
                     TLCRYRNWLAQDDTLSELLKLINCQLTEKGLKIEKASAAVVDATIIQTAGSKQRQAIE
                     VDEEGQISGQTTPSKDSDARWIKKNGLYKLGYKQHTRTDAEGYIEKLHITPANAHECK
                     HLSPLLEGLPKGTTVYADKGYDSAENRQHLEEHQLQDGIMRKACRNRPLTETQTKRNR
                     YLSKTRYVVEQSFGTLHRKFRYARSTYFGLIKVSAQSHLKAMCLNLLKAANRLSAPAA
                     A"
BASE COUNT         1238 a         1552 c         1466 g         1157 t
ORIGIN      
        1 taaccggcta tgtgctgtcc aatcggcgtg gtacgcgtgt ctgcgtgctg gacttgggcg
       61 ggattgtgca ggaattttcc gttttggcag acggcgtgcg cgaaaacctc gtggtgtcgt
      121 tcgacgatgc ggcttcctat gcggacaatc cgtttcagat taacaagcag atagggcgcg
      181 tggccggacg catccgcggt gcggcgttcg acatcaacgg caggacttac cgcgtggagg
      241 ccaacgaagg caggaacgcg ctgcacggcg gttcgcacgg gctggccgtt acccgtttca
      301 acgcggtggc ggcagacggc cgttcggtgg tgctgcgcag ccgcctgcaa cagtcggccg
      361 acggttatcc caacgatttg gatttggata tttcctaccg cttggacgag gacaaccggc
      421 ttaccgttag ctatcgcgcc accgcgctcg gcgacacggt gttcgacccg acgctgcaca
      481 tttactggcg gctggacgcg ggcctgcacg atgcggttct gcatattccg cagggcggac
      541 atattccggc cgatgccgaa aaactgcccg tctcaacggt ttcagacgac ctcgaagtat
      601 ttgatttcag ccggcccaag ccgctggatg ccgccgttgc cgccctgcgc cgcgaaacgg
      661 gtcgggccgg ttttgacgac gcttaccgcg tgccgtccga tataggccgt cccgccgctg
      721 tgttgcaagc cggacgccgc cgtcgtatca gcatatacag cgaccgcaac ggcttggtca
      781 tctttaccgc cgccccgcag gatttcgcgc ggcacgatgc gggcgtttac gacgcgctgg
      841 cgaccgaggc gcagacgctg cccgacagcc tgaattggcc cgagttcggc aatattcgtc
      901 tgaacaaggg tgataccagg gaggcgacga ttgcttacgg catcgaatcc ctttcttagg
      961 agcttcctaa caccggttgc agacggcctt tttatagtgg attaacaaaa accggtacgg
     1021 cgttgcctcg gcttagctca aagagaacga ttctctaagg tgctgaagca ccaagtgaat
     1081 cggttccgta ctatttgtac tgtttgcggc ttcgtcgcct tgtcctgatt tttgttaatc
     1141 cactataaga tttcaccatt ccctcaaatc aatccaaaca ggagcttcat aaatgtacac
     1201 aagaattatg gaaatcagcc cttggacgct gcgttcggca aagctggaaa aagaacacaa
     1261 acggctgcaa gagagcctga ccagtttggg caacggctat atgggtatgc gcggcagctt
     1321 tgaggaaacc tactccgccg acagccactt gggcacctac atcgccggcg tgtggttccc
     1381 cgacaaaacc cgcgtcggct ggtggaaaaa cggctatccc aaatatttcg gcaaagccat
     1441 caacgcgctc aatttcagca aagtcaaaat ctttgtcgat ggtcaagagg tggacttggc
     1501 gaaaaacgat gttgccggct tctccgtcga actcgatatg cagcacggcg tgttgcgccg
     1561 ctcgttcacc gtattcggcg tgcgtttcga tgtgtgcaaa ttcctgtccg tcgcacaaaa
     1621 agagctggct ctcatccgct gggaagccgt atctatcgac ggcaaaaccc accaagtccg
     1681 catcgattcc atcatcgatg ccgacgtgaa aaacgaagat tccaactacg aagaaaaatt
     1741 ctggcaagta ttggacaaag gcgtttcaga cgaccgctcc tacattgcca cccaaaccgt
     1801 caccaatccc ttcggcgtgg aacaatttat cgtcaacgcc gagcaaactt tcgccggcag
     1861 cttcaaagcc ctcggcggca gccaaaccga ctggcaggtc tccaattctt tcgaggccga
     1921 agtcggcggc acgcccaaaa cctttgaaaa acgggttatt gttaccacca gccgcgatta
     1981 tcagggcttg gaagcagtga aagccgcagg ccgtgccttg tcggaaaaag tcgcaggcgt
     2041 tgcgtttgaa accttgctgg acgcgcacaa agcaggctgg ctgcaccgtt gggaaatcgc
     2101 cgacgtggtc atcgaaggca gcgacgaagc gcagcaaggc atccgtttca atctgttcca
     2161 actgttctcc acctactacg gcgaagatgc gcgcctgaac atcggcccca aaggctttac
     2221 cggcgaaaaa tacggcggcg cgacctattg ggataccgaa gcctatgccg taccgctcta
     2281 cctcgcactg gcggaacccg aagttacccg caacctgctg caataccgcc gcaaccaact
     2341 gccgcaggcg cagcacaacg cgcgcgaaca gggcttggcg ggcgcactct atccgatggt
     2401 aacgtttacg ggtatcgagt gccacaacga atgggaaatc accttcgagg aaatccaccg
     2461 caacggcgcg attccttacg ccatctacaa ctacaccaac tacaccggcg acgagggcta
     2521 tcttgccaaa gaaggcttgg aagtcttggt cgaagtgtcc cgcttctggg cggaccgcgt
     2581 ccacttctcc aaacgcaacg gcaaatacat gattcacggc gtaaccggcc cgaacgaata
     2641 cgaaaacaac atcaacaaca actggtacac caacaccctc gccgcatggg tattggacta
     2701 cacccgcgaa gccttggcga aatacccgcg tccggatttg aacgtgcgtg ccgccgagtt
     2761 ggaaaaatgg gcggacatca gcgcgaatat gtaccgtccg catgacgaag aactcggcgt
     2821 attcgtgcaa cacgacggct tcctcgacaa agacatccgc cccgtgtccg cgctttcgcc
     2881 cgacgatttg ccgctcaacc agaaatggtc gtgggacaaa atcctgcgtt cgccctttat
     2941 caaacaggcg gacgtattgc aaggcatcta tttcttcggc gaccgtttca atatcgacga
     3001 aaaacgccgc aatttcgact tctacgaacc gatgaccgtg cacgaaagct cgttgtcgcc
     3061 gtgtatccac tctattctcg ccgccgaact gggcaaagaa gaaaaagccg tggaaatgta
     3121 ccggcgcacc gcacgcctgg acttggacaa ctacaacaac gacaccgaag acggcctgca
     3181 cattacttct atgaccggct cgtggctcgc catcgtccaa ggtttcgccc aaatgaaaac
     3241 ttggggcggt aaactcagct tcgcaccgtt cctgccgagc gcatggacag gctacgcctt
     3301 ccatatcaac taccgaggcc gtctgattaa agtcgccgtc ggcaaagaaa acgtcgtctt
     3361 caccctgctc aaaggcgagc cgctcgattt gcaggtgtac ggcaaagaca tcacactcaa
     3421 cggcagccat accgccgcgt tggaaaaata aggagggcgc aaaatgacgt ttaccgcagt
     3481 gctcttcgat ctcgacggcg tcatcaccga caccgccgaa taccactacc gcgcgtggaa
     3541 aaaactcgcc gaagaactgg gcatcagcat cgaccgcaag tttaacgagc agctcaaagg
     3601 cgtgtcgcgc gacgattcgc tcaaacgcat cctcgcgcac ggcggcaaaa ccgtcagcga
     3661 agccgagttc gccgaactga cccgccgtaa aaacgacaac tacgtcgaga tgattcaggc
     3721 agtcaaaccc gaagacgtgt atcccggcat tttgcccctg ctggaaacat tgaaagcaaa
     3781 cggcaaaaaa atcgccctcg cgtccgccag taaaaacggc ccgttcctgc tcgaacgcat
     3841 ggggctgacc cacttcttcg acaccgtcgc cgaccctgcc gccgtcgcgc attccaaacc
     3901 cgcccccgac atcttcctcg ccgccgccga gggcgtgggc gcggacatcc gccgctgcat
     3961 cggcattgaa gacgctgccg caggtgtcgc cgccatcaaa gcctccggcg ccttacccat
     4021 cggtgtgggc aaagccgaag acttgggtag cgacatcccg ctggtgtccg gcaccgccga
     4081 gctgacctac gcctacctgc aaaacgtgtg ggcacagtcg ggcaggtaaa acgcgtcaga
     4141 taaagtgtta aggaagtaaa aggccgtctg aacagtgttt cagacggcct gagacctttg
     4201 caaaattcct gtccctcccg acagccgaaa cccaaacaca ggatttcggc tgttttcgta
     4261 ccaaatacct cctaatttta cccaaatatc cccttaatcc tgcccggata cccgataatc
     4321 aggcatccgg gctgcctttt aggcggcagc gggcgcactt aacctgttgg ccgctttcaa
     4381 caggttcaaa cacatcgctt tcaggtggct ttgcgcactc actttaatca gtccgaaata
     4441 ggttgaccgc gcatagcgga atttacggtg cagcgtaccg aagctctgtt cgaccacata
     4501 acgggtcttc gacaaatacc ggttgcgttt ggtttgcgtt tccgtcagcg gacggttgcg
     4561 gcaggctttg cgcataatgc cgtcctgcaa ctgatgttct tccagatgtt gccggttttc
     4621 cgcactgtca tagcctttgt cggcatagac ggtcgtacct ttgggcagtc cttccaacaa
     4681 cggcgacagg tgtttgcact catgggcatt ggcgggagta atgtgcagtt tctcgatata
     4741 gccttctgca tcggtacggg tatgttgttt gtaaccgagt ttgtagaggc cgtttttctt
     4801 tatccaacgg gcatcgctgt ccttactcgg tgtggtttga ccgctgattt gtccttcttc
     4861 gtcaacttct atggcctgac gctgtttgct gccggcggtc tggataatgg tggcatcaac
     4921 gacggcggcg gatgctttct ctatttttag gcctttttcg gtcagttggc agttaatcag
     4981 tttgagtaat tcggacaggg tgtcgtcttg cgccagccag ttgcggtagc ggcataaggt
     5041 actgtaatcg gggatgatca gttcgtcgaa acggcaaaac aggttgaaat cgatgcgggt
     5101 gatgaggctg tgttcgagtt cgggatcgga gaggctgtgc cattgtccga gcaggatggc
     5161 tttgaacatg gacaacaggg gacaggcggg acgaccgcgg tggtctctaa ggtaacgggt
     5221 tttttgacga ttcaggtact gttcgatcgg ctgccaatca atcacctggt ccaacttcaa
     5281 tagcgggaaa cggtcgatgt gtttggcaat catggcttgg gcggtttgct ggaagaaggt
     5341 gctcatgaga aatctcctaa atgtcttggt gggaatttag gggattttgg ggaattttgc
     5401 aaaggtctca ggt
//
LOCUS       DAXIFD010000131         5412 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.131, whole genome shotgun sequence.
ACCESSION   DAXIFD010000131 DAXIFD010000000
VERSION     DAXIFD010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5412
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.131"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..386)
                     /locus_tag="ACFOCN_001634"
     CDS             complement(<1..386)
                     /locus_tag="ACFOCN_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970747.1"
                     /translation="MVEAKIFILYGAANKGKSTTLNTLFNQICRKFSKFLVFFERHGN
                     GLDFVAVFDHEGQRIGFYSSGDNEYEVRRNLYKLYSHNCDFIFGTSRTRGGSCDAVGC
                     YAELLHGDVNIINWCEKFEPTDEDNER"
     gene            complement(386..1687)
                     /gene="nuoF"
                     /locus_tag="ACFOCN_001635"
     CDS             complement(386..1687)
                     /gene="nuoF"
                     /locus_tag="ACFOCN_001635"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HFC6970748.1"
                     /translation="MAIYQSGVIFDQVDTANPDCWTLDEYVKRGGYTALRKILSENIS
                     QTDVIDEIKTSGLRGRGGAGFPTGLKWSFMPRSFPGEKYVVCNTDEGEPGTFKDRDII
                     MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGS
                     DFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTET
                     FSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGG
                     MRGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVK
                     ALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMEDLDLLDSVGNQMAGRT
                     ICALADAAVFPVRSFTKHFRDEFVHYIEHGGPMKEHKWGGW"
     gene            complement(2077..2550)
                     /gene="nuoE"
                     /locus_tag="ACFOCN_001636"
     CDS             complement(2077..2550)
                     /gene="nuoE"
                     /locus_tag="ACFOCN_001636"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HFC6970749.1"
                     /translation="MLSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPET
                     IAFVADYIGITPAQAYEVATFYNMYDLEPVGKYKLTVCTNLPCALRGGMATGEYLKQK
                     LGIGYGETTPDGKFTLVEGECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELE"
     gene            complement(2550..3806)
                     /gene="nuoD"
                     /locus_tag="ACFOCN_001637"
     CDS             complement(2550..3806)
                     /gene="nuoD"
                     /locus_tag="ACFOCN_001637"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HFC6970750.1"
                     /translation="MANKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLL
                     HRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMF
                     AEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV
                     YRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETLLTDN
                     RIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVN
                     GDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI
                     HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDE
                     MAKGHMLADVVAIIGTQDIVFGEVDR"
     gene            complement(3796..4389)
                     /locus_tag="ACFOCN_001638"
     CDS             complement(3796..4389)
                     /locus_tag="ACFOCN_001638"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HFC6970751.1"
                     /translation="MASIQNLYETVSRVLGNQAGKVISALGEITVECLPEHYISVMTA
                     LRDHEELHFELLVDLCGVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDD
                     FPVVESVVDIYNSADWYEREAFDLYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGY
                     VEMRYDEEQKRVIYQPVTIEPREITPRIVREENYGGQ"
     gene            complement(4402..4884)
                     /locus_tag="ACFOCN_001639"
     CDS             complement(4402..4884)
                     /locus_tag="ACFOCN_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HFC6970752.1"
                     /translation="MGIEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMH
                     AGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSC
                     ANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTIARDE
                     "
     gene            complement(4875..5231)
                     /locus_tag="ACFOCN_001640"
     CDS             complement(4875..5231)
                     /locus_tag="ACFOCN_001640"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HFC6970753.1"
                     /translation="MLSAYFPVFVFILVGLAASVLFILLGTILGPKRHYAEKDAPYEC
                     GFEAFENARMKFDVRYYLVAILFILFDLEVAFMLPWAVVFKDLGAYGFWSMLVFIVVL
                     TVGFVYEWKKGALEWE"
BASE COUNT         1307 a         1370 c         1386 g         1349 t
ORIGIN      
        1 cgctcattgt cttcatctgt aggctcaaac ttttcacacc aattaattat atttacatcg
       61 ccatgcaata actctgcata acatcctact gcatcgcaac taccaccccg tgtccttgac
      121 gtgccaaaaa taaaatcaca attatgcgaa taaagtttgt ataaatttct cctaacctcg
      181 tattcattat caccagatga ataaaaacca atcctctgac cttcatgatc aaatactgca
      241 acaaaatcta agccgtttcc atgtctttca aaaaagacta gaaatttaga aaatttccga
      301 caaatctgat taaaaagcgt attgagtgtc gtactcttac ctttgttggc tgcaccgtat
      361 agaataaaaa ttttagcttc caccattacc accctcccca cttatgctct ttcatcggtc
      421 cgccgtgttc gatgtaatgc acaaactcat cacggaaatg cttggtaaag cttcggacgg
      481 ggaagacggc ggcatcggca agggcgcaga tggtgcggcc tgccatttgg ttgccgacag
      541 aatccagcaa atccaaatct tccattttac ctttgccttc tacgatgcgg tggacgatgc
      601 ggtaaagcca gccggtgcct tctcggcaag gcgtacattg gccgcaagac tcgtcgtagt
      661 agaagtagct caggcgctca agggctttca ccatgcacac gtcttcgtcc atgacgataa
      721 tcgcgccaga acccagcatc gagcctgctt tggaaatcga gtcgtagtcc atatttgtct
      781 gcatcatgat gtcggcaggc aatacgggcg cggacgaacc gccgggaatg acggctttga
      841 gttttttgcc gccgcgcata ccgcctgcca ttttcaagac ttcggcaaac ggtgtgccca
      901 atggcacttc atagttgccc ggacgctcga catggccgga aatacagaat aatttggtac
      961 cgcctgcatt cggaatacct ttatcggcaa atgcctgtcc gccgtcacgg ataatgaatg
     1021 aaacggagga gaaagtttcg gtattgttga tggtagtcgg tttgccgtac aggccgaacg
     1081 aagcagggaa tggcggttta aagcgcggct ggcctttttt gccttccagc gattcaagca
     1141 atgcggtttc ttcgccgcag atgtatgcac cgtagccgtg gtgggcgaag agttcgaatt
     1201 caaaatccga acccaaaata tttttaccca aaaagcctgc ggcacgcgcc tgctccaaag
     1261 cggcctcaaa gcgttggtag ccttcaaaaa tttcgccgtg gatatagttg taaccggctt
     1321 tcgcgcccat cgcgtaaccg gcgataatca tgccttcaat cagggcatgg gggttgaaca
     1381 taataatgtc gcggtcttta aatgtacccg gctcgccttc gtcggtgttg caaacgacgt
     1441 acttttcgcc ggggaaagaa cggggcataa agctccattt caaaccggtc gggaagcccg
     1501 caccgccacg accgcgcaag ccggaggttt tgatttcgtc aatcacatcg gtttgcgaga
     1561 tgttttcgga caggatttta cgcagggcgg tataaccgcc acgtttgacg tattcgtcca
     1621 atgtccagca atcgggattg gcggtatcca cttggtcaaa aatcacgcct gattggtaaa
     1681 tagccatttt tggtgtgcct gtttgttttc gtatcggttg cggccgctgt ttcagacgac
     1741 cttaagatgt ctttgtgtac cggcttgtaa cgtcgtctga aataaaatct agtttatcaa
     1801 atcgatattt tcagacgacc tttaatcgtt tttgttggat ctcgaccact tgcttgtctg
     1861 tcgtcattcc cgcgcaggcg agaatccatc ctcaatggta agcaatgtct tattaaattc
     1921 agaaaccgaa tcttaccggt ggattcccgc ctgcgcggga atgacggcat ttcggtattt
     1981 cagtagggcg gattcttaaa tccgacattt tgccttttta cccactctgt cggatacaag
     2041 tatccgacct acgtttaaat cgtcgtttca gacgacctac tccaactccg ccagtttctt
     2101 ctcaatcgct tcttcggtca taaagctgca catgctgtgg ttgttgacca gcataacggg
     2161 ggcatcaccg catgcgccca tgcattcgcc ttcgacaagg gtaaacttgc cgtcaggggt
     2221 agtttcgccg tagccgatac cgagtttttg tttgaggtat tcgccggtag ccataccgcc
     2281 gcgcagggcg cagggcaggt tggtacaaac ggtcagtttg tatttgccga caggctcaag
     2341 gtcgtacata ttgtagaaag tggcgacttc gtaggcttgt gcaggcgtga tgccgatata
     2401 gtcggcaaca aaagcgatgg tttcgggggc gagccagcct ttttcggttt gggcgatacg
     2461 caacgcaccc atgatggcgg aacggcgttg gtcggcggga tatttcgcca gttctgtgtc
     2521 gatttgtttt aaggactctg cggataacat tatcggtcaa cctccccgaa tacgatgtcc
     2581 tgcgtaccga tgatggcaac gacgtcggcg agcatgtggc cttttgccat ttcgtccatg
     2641 ccttgcagat gggcgaagcc gggtgcgcgg attttcaggc ggtagggttt gtttgcgccg
     2701 tctgaaatga tgtaaacgcc gaactcgcct ttcggatgtt cgacagcggt gtaggtctcg
     2761 ccctcgggaa cgtgcatacc ctcggtaaag agtttgaaat ggtgaatcag gtcttccata
     2821 cctgttttca tttcggtacg tttgggcgga gcgaatttgt ggtttgtggt aatgaccgga
     2881 cccggattga cacgcaacca ctcggaacat tgtttgatga tgcgtacgga ttgacgcatt
     2941 tcttccatac ggcagaggta gcggtcgtag cagtcgccgt tcacgccgac agggatgtcg
     3001 aaatccattt tgtcgtacac ttcgtaaggc tgtgtcttac gcacgtccca ttccacgccc
     3061 gaaccgcgca acatcacgcc ggtaaagcct ttttgcatgg cacgttcggg ggagacgacg
     3121 ccgatgccga cggtacgctg tttccaaata cggttgtcgg tcaagagggt ttcgagtgtg
     3181 tcgatgtttt tcgggaaacg ctcgcagaag gcgtcgataa agtcgagcat agtgccttca
     3241 cgggattcgt tgagctgctt caatactttg gcattgcgga atttgctgct ctcgtatttg
     3301 ggcatgaagt cgggcaggtc gcggtaaacg ccgccgggac ggaagtaggc tgcgtgcata
     3361 cgtgcgccgg acacggcttc gtacaagtcc atcagctctt cgcggtcgcg gaaggcgtaa
     3421 aggatggcgg tcatcgcgcc gatgtcgaag gcgtgcgaac cgatgcccat caagtgattg
     3481 aggatgcgcg ttacttcggc aaacatcacg cggatatatt gggcgcggat aggtacatcg
     3541 ataccggcaa gtttttctac tgccaagcaa tacgcctgct cgttgaccat catggaaaca
     3601 tagtccaagc gatccatata gggcagggct tgcagatagg ttttggtttc cgccagtttt
     3661 tcagtacctc ggtgcaggag gccgatgtgc ggatcggcac ggacgatggt ttcgccctcc
     3721 aactccaaaa tcatacgcaa tacgccgtgc gccgcagggt gttgcgggcc gaagttgatg
     3781 gtgtagtttc ttaatttatt ggccaccgta gttctcctca cggacgatac gcggcgtgat
     3841 ctcgcgcggc tcgatggtaa cgggttggta aatcacgcgt ttttgctctt cgtcgtaacg
     3901 catttccaca tagccggaaa tcgggaagtc tttgcggaac ggatgtccga caaagccgta
     3961 atcggtcagg atgcggcgca agtccgggtg gttgttgaac atgatgccgt acaaatcgaa
     4021 ggcttcgcgt tcgtaccaat ccgcgctgtt gtaaatatcg actacggatt caactacggg
     4081 gaagtcgtcg tctgaaaccc agacgcgtac gcggatgcgt tgattgtttt taacggaaag
     4141 cagctgactg acgacggcaa agcgtttgcc ctgccatgct tcgtttttgt aagtgctgta
     4201 atcgacaccg cacaaatcga ccagaagctc gaaatgcagc tcttcatgat cgcgcaatgc
     4261 ggtcatgact gaaatatagt gttcgggcag acactcgacg gtaatctcgc ccaaagctga
     4321 aatgactttg cctgcctgat tgcccaaaac gcggctgacg gtttcgtata agttttgaat
     4381 gcttgccata tcttcctcct cttactcgtc acgcgcgatg gtggaagtgc gcttgatttt
     4441 ttgttggagc tgaatcaggc cgtaaatcag ggcttccgca gtcggcggac aacccggcac
     4501 ataaacgtct accggcacga cgcggtcggc accgcgcaca acggaataag aatagtgata
     4561 atagccgccg ccgttggcac acgagcccat agacaatacc cagcgcggct cggcgagctg
     4621 gtcatacacg cggcgcaggg cgggtgccat tttgttggtc agcgtacccg ccacaatcat
     4681 caggtcggcc tgacgtgggg acggacggaa aatgatgccg aaacggtcaa ggtcataacg
     4741 cgccataccc gcgtgcatca tttccacggc gcagcaggcc aagccgaaag taaccggcca
     4801 caacgaaccg gtacgcatat agttcaacac cgtatccgcg ctggtggtga tgaaaccttt
     4861 tttcaaaacg ccttctattc ccattccagc gcaccttttt tccattcgta aacaaagcct
     4921 accgtcagaa cgacgataaa caccagcata gaccagaagc cgtacgcgcc caaatctttg
     4981 aacacgactg cccacggcaa catgaacgcg acctccaaat caaacaagat aaagaggatg
     5041 gcgacgaggt aatagcgcac gtcgaacttc atcctggcgt tttcaaaggc ttcaaaaccg
     5101 cattcgtaag gcgcgtcttt ttcggcgtag tggcgtttcg ggcctaaaat cgtgccgagc
     5161 aggataaaca gcacgctggc cgcgaggccg acgaggataa agacaaagac gggaaagtaa
     5221 gcggacaaca tggttacacc caaatccgtt aacaaaattt ctacaataat ttcgtatttt
     5281 agcgaatttc aaaaaccatt aaaaggtaaa tatcggcaaa acgcccaaaa aaacccaata
     5341 aatacaatca tgttatgata acgattctta tttgatttta taaggtcata taaattttta
     5401 caccgtaatt cg
//
LOCUS       DAXIFD010000132         5410 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.132, whole genome shotgun sequence.
ACCESSION   DAXIFD010000132 DAXIFD010000000
VERSION     DAXIFD010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5410
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.132"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..242)
                     /locus_tag="ACFOCN_001641"
     CDS             complement(<1..242)
                     /locus_tag="ACFOCN_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain protein"
                     /protein_id="HFC6970754.1"
                     /translation="MEDKQGMKKAVAGVMTDASSDGRKPATASNLPPLSNRGGTETET
                     AGRVQEVFECYEKYITDGKGNLLGVPLRRGVSDSAF"
     gene            344..654
                     /locus_tag="ACFOCN_001642"
                     /pseudo
     CDS             344..654
                     /locus_tag="ACFOCN_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684347.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(711..1769)
                     /gene="trpD"
                     /locus_tag="ACFOCN_001643"
     CDS             complement(711..1769)
                     /gene="trpD"
                     /locus_tag="ACFOCN_001643"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HFC6970755.1"
                     /translation="MITPQQAIERLISNNELFYDEMTDLMRQIMRGQVLPEQIAAILT
                     GLRIKVETVSEITAAAAVMREFATKVPLENAEGLVDIVGTGGDGAKTFNISTTSMFVA
                     AAAGAKVAKHGGRSVSSSSGAADVVEQMGANLNLTPEQVAQSIRQTGIGFMFAPNHHS
                     AMRHVAPVRRSLGFRSIFNILGPLTNPAGAPNQLLGVFHTDLCGILSRVLQQLGSKHV
                     LVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRRNLDEIKVANTQESL
                     LKMNEVLEGREGAARDIVLLNTAAALYAGNVAASLSDGISAAREAIDSGRAKSKKEEF
                     VGFQPQQRCHFLGKMELG"
     gene            complement(1834..2424)
                     /locus_tag="ACFOCN_001644"
     CDS             complement(1834..2424)
                     /locus_tag="ACFOCN_001644"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HFC6970756.1"
                     /translation="MLLFIDNYDSFTYNIVQYFTELGQEVAVRRNDDITLEEIEALNP
                     QYLVIGPGPCSPKEAGISVAAMRHFAGRLPIMGVCLGHQTIGEAFGGRIVRAKTLMHG
                     KVSPVYHSGKGMFKGLPNPVTCTRYHSLVIERGTLPECLEITAWTEDGEIMGVRHKEY
                     AVEGVQFHPEALLTEYGHDMLNNFFIEFQNFKPQKI"
     gene            2846..5122
                     /gene="znuD"
                     /locus_tag="ACFOCN_001645"
                     /gene_synonym="tdfJ"
     CDS             2846..5122
                     /gene="znuD"
                     /locus_tag="ACFOCN_001645"
                     /gene_synonym="tdfJ"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_118820519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc receptor ZnuD"
                     /protein_id="HFC6970757.1"
                     /translation="MAQTTLKPIVLSILLINTPLLAQAHETEQSVDLETVSVVGKSRP
                     RATSGLLHTSTASDKILSGDTLRQKAVNLGDALDGVPGIHASQYGGGASAPVIRGQTG
                     RRIKVLNHHGETGDMADFSPDHAIMVDTALSQQVEILRGPVTLLYSSGNVAGLVDVAD
                     GKIPEKMPENGVSGELGLRLSSGNLEKLTSGGINIGLGKNFVLHTEGLYRKSGDYAVP
                     RYRNLKRLPDSHADSQTVSIGLSWVGEKGFIGVAYSDRRDQYGLPAHSHEYDDCHADI
                     IWQKSLINKRYLQLYPHLLTEEDIDYDNPGLSCGFHDDDDAHAHTHSGRPWIDLRNKR
                     YELRAEWKQPFPGFEALRVHLNRNDYRHDEKAGDAVENFFNNQTQNARIELRHQPIGR
                     LKGSWGVQYLQQKSSALSAISEAVKQPMLLDNKVQHYSFFGVEQANWDNFTLEGGVRV
                     EKQKASIRYDKALIDRENYYNHPLPDLGAHRQTARSFALSGNWYFTPQHKLSLTASHQ
                     ERLPSTQELYAHGKHVATNTFEVGNKHLNKERSNNIELALGYEGDRWQYNLALYRNRF
                     GNYIYAQTLNDGRGPKSIEDDSEMKLVRYNQSGADFYGAEGEIYFKPTPRYRIGVSGD
                     YVRGRLKNLPSLPGREDAYGNRPFIAQDDQNAPRVPAARLGVHLKASLTDRIDANLDY
                     YRVFAQNKLARYETRTPGHHMLNLGANYRRNTRYGEWNWYVKADNLLNQSVYAHSSFL
                     SDTPQMGRSFTGGVNVKF"
     gene            5202..>5410
                     /locus_tag="ACFOCN_001646"
     CDS             5202..>5410
                     /locus_tag="ACFOCN_001646"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970758.1"
                     /translation="MAKTKNKPLCHHSHFLCFIILAFTPSFSQKQKNQKQKPIIPAQA
                     RIQFIRFQPFPINRLSIWVLDSHFRG"
BASE COUNT         1384 a         1530 c         1236 g         1260 t
ORIGIN      
        1 atgaacgccg aatcagatac accgcgacga agcggaacgc ctaaaaggtt tcctttgccg
       61 tctgttatgt acttttcata acactcgaag acttcttgaa ccctgcccgc cgtttcggtt
      121 tctgtacccc ccctgttaga taagggggga agatttgaag cggttgccgg cttcctgccg
      181 tccgatgacg cgtccgtcat cacgccggca accgcctttt tcatcccttg cttatcttcc
      241 atggtgcgaa tcctcaaaaa cgggcaaaaa aaagccctgt tacttgtaga aagtaaagga
      301 cgttaatttt tgttaatcgt cccttcttag ggacgcaata tataaggttt ataccgtcgt
      361 tgttcctaat gcgcaatcag cgacattgtt gccaattatc cgaaagaaag ttaagcctga
      421 tggcattgta tacacggata cctttcgtag ttatgatgtg cttgatatta gtgaatttag
      481 ccatttacgt aagtttaacg gcattcccaa agagcatttg gggctgcatt taaagaaatg
      541 ccaatggcat tttaaataga atctcaaatt cagattttaa gacaattagt taatgggaat
      601 ttggtctggt tatctagtac agccccaagt ttttatataa aaacagtttg gtaagttctc
      661 ttcgtgaagt gcttatgttt tgccacaaaa gttccataat catggcggca tcacccaagc
      721 tccatctttc caagaaaatg gcatctttgt tgtggttgaa aaccgacaaa ctcctctttt
      781 ttcgatttgg ccctgcctga atcgatggct tcccgtgcgg cagatatgcc gtctgaaagc
      841 gaagcagcga catttccggc atacagggcg gcggcggtgt tgagcaatac gatatcgcgc
      901 gcagcccctt ctcttccttc cagcacctca ttcattttca acaaagattc ctgagtattg
      961 gcaactttga tttcatccaa attgcggcgg gtttcgatac cgaaatcttc tgggcggatg
     1021 tcgtattcgc tgatttttcc gtctttgagc tcggcaacgc gtgttttgcc cgtcagtgta
     1081 atttcatcca aaccgccctc cccgcaaaca accaaaacgt gttttgaacc aagttgttgc
     1141 aagacccgcg acaaaatgcc acacaaatcg gtgtggaaca cgcccaaaag ctggttcggc
     1201 gcgcccgcag gattcgttaa cggacccaat atgttgaaaa tacttcggaa accgagcgaa
     1261 cggcgtacag gggcgacatg gcgcatggca ctgtggtgat tgggcgcgaa cataaacccg
     1321 atgccggtct gcctgatact ttgggcaacc tgttcgggag tcaggttgag gtttgcgccc
     1381 atctgctcca ccacgtcagc cgcaccgctg gaggaagaga ccgaccggcc tccgtgtttg
     1441 gcaaccttcg cgcctgccgc tgcggcaaca aacatcgaag tcgtcgaaat attgaaggtt
     1501 ttcgcgccat ccccgcccgt accgacgata tcgaccagcc cctctgcatt ctccagcggc
     1561 acttttgtcg caaactcacg catgacggct gcagctgcgg taatttcgga aacggtttca
     1621 accttgatac gcaatcctgt caaaatggcc gctatctgct ccggcagaac ctgtcctctc
     1681 ataatctgac gcatcaagtc ggtcatttca tcgtaaaaca actcgttatt gctgattaat
     1741 cgttcgatgg cctgttgcgg tgtaatcatt tttttgtcct ccgttcaata ttcggacgaa
     1801 aatgccgtct gaagggcttc agacggcatc acgtcagatt ttttgcggtt tgaagttttg
     1861 aaattcgata aaaaaattgt tcaacatatc atgtccgtat tcggtcagca gagcttcagg
     1921 gtggaattgt accccctcaa cggcatattc cttatggcgc acgcccataa tctcgccgtc
     1981 ttccgtccat gccgtgattt ccaaacattc gggcagcgtg ccgcgttcga taacgaggct
     2041 gtgataacgc gtacaggtaa ccggattggg caaaccctta aacataccct tgcccgaatg
     2101 gtacacgggc gacaccttgc cgtgcatcag cgttttggcg cggactatcc tgccgccgaa
     2161 cgcctcgcct atcgtctgat gcccgaggca cacgcccata atcggcagcc tgccggcaaa
     2221 atggcgcatc gccgccacgg aaatccccgc ttctttgggc gaacacggac cggggccgat
     2281 aacgagatat tgcggattca atgcctcgat ttcctccaac gtaatatcat cgttgcggcg
     2341 cacggcaact tcctgcccca attcagtgaa atactggacg atgttgtaag taaaactgtc
     2401 gtaattgtcg ataaacaaaa gcattttgtg attaacctat tgatttataa tttgtttgtt
     2461 attaactgca tttccgatac ccccatccat accctcttat atcttagcgt gcccgatgcg
     2521 ccctcgtgaa cctggcgcag agcctcgcgt tctgacaagt acgccatttt gccacctttt
     2581 cgaccgttcg ggaacgtgcc gtttttatgc actcataaat tttggttatc ccgcagccga
     2641 acataatggg caaacacagc ggaatctgcg tcaacatcaa ccgcgccccc gaaggacggc
     2701 ggatacaaat ggacaccgcc cgatgccgca accgtttcat ttgaaaaact tttgcctatg
     2761 ccctctgagt gttctcaaaa tcttatgata taaggaatgc aatgttatat aataacaaac
     2821 ttttgaaatg cgacgagaag ccaaaatggc acaaactaca ctcaaaccca ttgttttatc
     2881 aattctttta atcaacacac ccctcctcgc ccaagcgcat gaaactgagc aatcggtgga
     2941 tttggaaacg gtcagcgtcg tcggcaaaag ccgtccgcgc gccacatccg ggctgttgca
     3001 cacttcgacc gcttccgaca aaatcctctc cggcgatacc ttgcgccaaa aagccgtcaa
     3061 cttgggcgat gctttggacg gcgtgccggg cattcacgcc tcgcaatacg gcggcggcgc
     3121 gtccgctccc gttattcgcg gtcaaacagg caggcggatt aaagtgttga accatcacgg
     3181 cgaaacgggc gatatggcgg atttttcgcc cgatcacgcc attatggtag ataccgcctt
     3241 gtcgcaacag gtcgaaatcc tgcgcgggcc ggttacgctc ttgtacagct cgggcaatgt
     3301 ggcggggctg gtcgatgttg ccgatggcaa aatccccgaa aaaatgcctg aaaacggcgt
     3361 atcgggcgaa ctcggattgc gtttgagcag cggcaatctg gaaaaactca cgtccggcgg
     3421 catcaatatc ggtttgggca aaaactttgt attgcacacg gaagggctgt accgcaaatc
     3481 gggggattac gccgtaccgc gttaccgcaa tctgaaacgc ctgcccgaca gccacgccga
     3541 ttcgcaaacg gtcagcatcg ggctgtcttg ggttggcgaa aaaggtttta tcggcgtagc
     3601 gtacagcgac cgtcgcgacc aatatggtct gcctgcccac agccacgaat acgatgattg
     3661 ccacgccgac atcatctggc aaaagagctt gattaacaaa cgctatttac agctttatcc
     3721 gcacctgttg accgaagaag acatcgatta cgacaatccg ggcttgagct gcggcttcca
     3781 cgacgacgat gatgcacacg cacacaccca cagcggcaga ccgtggatag acctgcgcaa
     3841 caaacgctac gaactccgtg ccgaatggaa gcaaccgttc cccggttttg aagccctgcg
     3901 cgtacacctg aaccgcaacg actaccgcca cgacgaaaaa gcaggcgatg cagtcgaaaa
     3961 cttttttaac aaccaaacgc aaaacgcccg catcgagttg cgccaccaac ccataggtcg
     4021 tctgaaaggc agctggggcg tgcaatattt acaacaaaaa tccagtgctt tatctgccat
     4081 atccgaagcg gttaaacaac cgatgctgct tgacaacaaa gtgcaacatt acagcttttt
     4141 cggtgtagaa caggcaaact gggacaactt cacgcttgaa ggcggcgtac gcgtggaaaa
     4201 acaaaaagcc tccatccgct acgacaaagc attgattgat cgggaaaact actacaacca
     4261 tcccctgccc gacctcggcg cgcaccgcca aaccgcccgc tcattcgcac tttcgggcaa
     4321 ctggtatttc acgccacaac acaaactcag cctgaccgcc tcccatcagg aacgcctgcc
     4381 gtcaacgcaa gagctgtacg cacacggcaa acacgtcgcc accaacacct ttgaagtcgg
     4441 caacaaacac ctcaacaaag agcgttccaa caatatcgaa ctcgcgctgg gctacgaagg
     4501 cgaccgctgg caatacaatc tggcactcta ccgcaaccgc ttcggcaact acatttacgc
     4561 ccaaacctta aacgacggac gcggccccaa atccatcgaa gacgacagcg aaatgaagct
     4621 cgtgcgctac aaccaatccg gtgcggactt ctacggcgca gaaggcgaaa tctacttcaa
     4681 accgacaccg cgctaccgca tcggcgtttc cggcgactat gtacgaggcc gtctgaaaaa
     4741 cctgccgtcc ctacccggca gggaagatgc ctacggcaac cgtcctttca tcgcacagga
     4801 cgaccaaaat gcccctcgcg ttccggctgc gcgcctcggc gtccacctga aagcctcgct
     4861 gaccgaccgc atcgatgcca atttagacta ctaccgcgtg ttcgcccaaa acaaactcgc
     4921 ccgctacgaa acacgcacgc ccggacacca tatgctcaac ctcggcgcaa actaccgccg
     4981 caatacgcgc tatggcgagt ggaattggta cgtcaaagcc gacaacctgc tcaaccaatc
     5041 cgtttacgcc cacagcagct ttctctctga tacgccgcaa atgggccgca gctttaccgg
     5101 cggcgtgaac gtgaagtttt aaaatcggac aggcaaacaa aaaaggtttt cagacggcat
     5161 tctgaaaacc ttttttcttt ttaatcaatt tgttaggaaa tatggcaaag acaaagaaca
     5221 aaccactatg ccatcattcc cattttcttt gtttcatcat tcttgctttc acgccgtcat
     5281 tctcgcaaaa gcagaaaaat caaaagcaga aacccatcat tcccgcgcag gcgagaatcc
     5341 aattcattcg gtttcagccg tttccgataa atcgccttag catttgggtt ttagattccc
     5401 actttcgtgg
//
LOCUS       DAXIFD010000133         5380 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.133, whole genome shotgun sequence.
ACCESSION   DAXIFD010000133 DAXIFD010000000
VERSION     DAXIFD010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5380
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.133"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(227..643)
                     /gene="dksA"
                     /locus_tag="ACFOCN_001647"
     CDS             complement(227..643)
                     /gene="dksA"
                     /locus_tag="ACFOCN_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HFC6970759.1"
                     /translation="MAKLTEQDILNWNGPEDDYMNDEHLAFFRELLVKMQDELIENAS
                     ATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCA
                     DTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD"
     gene            complement(790..1599)
                     /gene="proC"
                     /locus_tag="ACFOCN_001648"
     CDS             complement(790..1599)
                     /gene="proC"
                     /locus_tag="ACFOCN_001648"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HFC6970760.1"
                     /translation="MNRVEIMNVYFLGGGNMAAAVAGGLVKQGGYRIHIANRGAEKRE
                     RLQKELGVETSETLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVDTL
                     SRYLGGTRRIVRVMPNTPGKIGLGVSGMFAEAEVSETDRRIADRIMKSVGLTVWLEDE
                     AQMHSITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGE
                     DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ"
     gene            complement(1630..2037)
                     /locus_tag="ACFOCN_001649"
     CDS             complement(1630..2037)
                     /locus_tag="ACFOCN_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HFC6970761.1"
                     /translation="MGMRTIKYLAMALLLMFTVAGCQLAGWYPCPSLSGWCMPRKPAA
                     IDFWDIGGESPPSLEDYEIPLSDGNRSVRANEYESAQQSYFYRKIGKFEACGLDWRTR
                     DGKPLIETFKQEGFDCLKKQGLRRNGLSECVRW"
     gene            complement(2019..2723)
                     /locus_tag="ACFOCN_001650"
     CDS             complement(2019..2723)
                     /locus_tag="ACFOCN_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFC6970762.1"
                     /translation="MTVLQERYCEVSDRIGKLVLQVGRDPHSVSLIAVGKTFPSDGIR
                     EVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTIC
                     RLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRG
                     LMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMGMSDDMPAAIACGATHVR
                     IGSAIFGKRSRLECVQ"
     gene            2843..3886
                     /gene="pilT"
                     /locus_tag="ACFOCN_001651"
     CDS             2843..3886
                     /gene="pilT"
                     /locus_tag="ACFOCN_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HFC6970763.1"
                     /translation="MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSA
                     EEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPST
                     VLSLEDLKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
                     PIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAA
                     ETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNG
                     RVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEV
                     ARRRAQNSESMSF"
     gene            4049..5275
                     /locus_tag="ACFOCN_001652"
     CDS             4049..5275
                     /locus_tag="ACFOCN_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6970764.1"
                     /translation="MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCE
                     TAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRD
                     GEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRG
                     LLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDT
                     INWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERI
                     LNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGD
                     LMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGK
                     TPELLYDRVNGLNLIS"
BASE COUNT         1346 a         1655 c         1207 g         1172 t
ORIGIN      
        1 cagcagcgaa gaaccgaact atacgcccac agggaaaaac ggtcaatgct ttcagtggga
       61 tttttttggg gaaattcgtc atgtcgctgt cggataaggt ttttttattt tcgccaaacg
      121 ctgcaccacc tccaacaatc ctttcctctc cctcctctga ctggtgcgcc tttgtgaata
      181 tactgtctga aacttagggc ttcagacggc attttgtttg ccgccatcag tcggcaaact
      241 gttttttcat cctctctcgg cgttcttggg actcaacaga taaagtggct gtcgggcgtg
      301 ccagcagccg cttcagaccg ataggctctc ccgtatcggc acagaatcca taatcccctt
      361 catcaatatt gcggatggtc gcctgtattt tactgagaag ttttcgttcc cgatcgcggg
      421 tacggagttc caatgcgtac tcttcttcct gtgtggcacg gtcggcagga tcgggggctg
      481 attcgtgttc ttggagatgc cctgtcgtag cggaagcatt ttcgatgagt tcgtcttgca
      541 tttttaccag caattcgcgg aaaaaagcca aatgctcgtc attcatataa tcgtcttccg
      601 gcccgttcca attcaaaata tcttgttctg tcagctttgc cataatgtat atcctctcgg
      661 ttcaccgaaa aaaacaaagc accacaaagt ggctttattc ctttgatttt tataaggctt
      721 attgcctagg gcgtttttga aaacgcgcat cataacacgt tttggattgg tttttttatt
      781 ttctttacat tattgatatt gccgttccat ttcctgcgaa cggcgcacac aggcacaaac
      841 gccctcgctt atggcttcgg cgacacgatg ccgcctgaaa gcttccacgg cttcgtgggt
      901 tgtcccgcct tttgacgtta catttttttg aagcttctcg aaatcttcac ccgtctgctc
      961 ggcaagggca accgctcctt taaacgttgc cagactgagc gcgcgtgctt ctgccatatc
     1021 aaacccttgt cggatggcag cattttgcaa tgcgtccagc agataaaaca cataagccgg
     1081 tccgctgccg ctgataccgg taatgctgtg catttgcgct tcatcttcca accaaacggt
     1141 caaaccgact gatttcatga ttcgatcggc aatcctgcgg tctgtttccg atacttccgc
     1201 ttcggcaaac ataccggata cgcccagccc gatttttccg ggtgtattcg gcataacccg
     1261 gacaatgcgg cgtgttcccc cgaggtaacg gctgagcgta tcaaccgaca atccagctgc
     1321 aacagaaagc accaatgcgc cgttggtgcg gatatttttg cacgcggctt ccatatcctg
     1381 cggcttgacg gcaaggatta aaacatcgtc ggaatgaagc tccggcaagg tttcagaagt
     1441 ttcgaccccc aactcttttt gcaaacgttc gcgcttttcc gcaccccggt tggcaatatg
     1501 gatgcggtaa ccgccttgtt tgaccaatcc gcccgcaacg gcagccgcca tattgccgcc
     1561 gccgagaaaa taaacattca ttatttctac cctattcaaa attaccttac taaattcatt
     1621 cccaattttt taccatcgga cacactcgga cagaccgttg cgccgcaacc cctgcttttt
     1681 caaacaatca aaaccttcct gtttgaacgt ctcaatcaaa ggtttgccgt cacgcgtacg
     1741 ccaatccaac ccgcaggctt caaacttccc tattttcctg taaaagtaag attgttgtgc
     1801 ggattcatat tcgtttgccc taacggaacg attgccgtct gaaagcggta tctcgtagtc
     1861 ctctaaagac ggcggactct cgccgccaat atcccaaaaa tcgatggcag ccggttttct
     1921 cggcatacac cagccggaca acgacggaca tggataccaa cccgccaact gacagccggc
     1981 aaccgtaaac ataagcaata acgccattgc aagatatttt attgtacgca ttccaatctg
     2041 ctccttttcc cgaaaatcgc actgccgata cggacatgtg ttgcaccgca cgcaatggcg
     2101 gcaggcatat cgtccgacat ccccatagac agcacatccg ccttaacgcc agccgtattg
     2161 aggtcggcaa gcagtttccg catcgtttga aattgcacct tcaactccgt ttcactgctg
     2221 ttggctttgg caacacacat cagtccgcgt acgacgatat tcggcaactt cgccacttcg
     2281 accgcaagca cgaccgcttc ttcgggcgcg acaccgtgtt tcgccgcctc gcccgcaatg
     2341 ttcacctcga tacacacctg caaaggcggc attgaggaag gacgttgccc gctcagccgg
     2401 acagcggttt tcagacggca tatggtatgc acccaatgcg cgcgttcggc gacaaacttg
     2461 gttttgttgg actgcacatc gccgatgacg tgccacacga tgtcggtcaa atccgccaac
     2521 tcttccgttt tgccgtacca ctcctgaata tagttctcgc cgaaatcacg ctgtccggcg
     2581 gcgtaaactt cgcggatgcc gtctgaaggg aaagtcttac cgacggcaat caggctgacg
     2641 gaatgcggat ccctgcccac ctgcagaacc aattttccga tacggtcgga cacctcacaa
     2701 taacgttctt gcaacaccgt catagattat cccctaatta aaaatgatta aacagttgaa
     2761 acccctccag tcagggcggt acaatcaagg ttgttagaac cattccaacc aatcgaaaca
     2821 ttatactaaa cagagccgca ttatgcagat taccgactta ctcgccttcg gcgccaaaaa
     2881 caaagcatcc gaccttcacc tgagttcggg catatcccct atgattcggg ttcacggcga
     2941 tatgcggcgc atcaaccttc ccgaaatgag cgcggaagag gtcggtaata tggtaacttc
     3001 ggtgatgaac gaccaccagc ggaaaatcta ccagcaaaac ttggaagtcg acttctcgtt
     3061 cgaactgccc aacgtcgccc gattccgcgt caacgccttc aacatcggcc gcggtcccgc
     3121 cgccgtattc cgcaccattc ccagcaccgt cttatcgctg gaagatttga aagccccgag
     3181 cattttccaa aaaatcgcag aatcgccgcg cggcatggtt ttggttaccg gccctaccgg
     3241 ttcgggcaaa tcgaccacgc ttgccgcaat gatcaactac atcaacgaaa cccagccggc
     3301 acacatcctg accatcgaag acccgatcga attcgtccac caaagcaaaa aatccctgat
     3361 taaccagcgc gagctgcacc agcacaccct cagcttcgcc aacgcgctgc gttccgcatt
     3421 gcgcgaagac cccgacgtta tccttgtcgg cgagatgcgc gacccagaaa ccatcggctt
     3481 ggcgctgacc gccgccgaaa ccggacactt ggttttcggc acgctgcaca cgaccggcgc
     3541 agcaaaaacc gtcgaccgta tcgtggacgt attcccggcg ggggaaaaag aaatggtgcg
     3601 ctctatgctg tccgaatcgc tgaccgccgt catctcccaa aacctgctga aaacgcacga
     3661 cggcaacggc cgtgtcgcct cgcacgaaat cctgattgcc aaccccgccg tccgcaacct
     3721 catccgcgaa aacaaaatca cgcagattaa ctccgtcctg caaaccgggc aggcgagcgg
     3781 tatgcagaca atggatcaat cgctgcaatc gctggtgcgc caagggctga tcgcaccgga
     3841 agtcgcacgc agacgcgcgc aaaacagcga aagtatgagt ttctgacaca caaccgcctt
     3901 ccggccatac cggcgggaaa acaaggcgca aacacgcggg gcgggacgca gcatcccgcc
     3961 cggctaccct tccgaacagg aagcgtccgc cttcctgttg aaacctgccg ccgcaaactg
     4021 caaggcttaa accgaaaaga agctaacgat gaataccgat aacctgcacg acatcttgga
     4081 cgaaatggtt caagtgtatt ctcaaaaaaa acaaagccga tccgaaaccc cggccgaaat
     4141 cggcgcacac ttccacccgc tgctcgaccg cctgtgcgaa accgcagaag cacaaaacgc
     4201 gtccgacatc cttatcagca aaggattccc gccctcgttg aaaatcaaca gcgcattaac
     4261 cccgcagccg caaaaggcgc tgacgggcga ggaaaccgcc gccatcgccg catcgacgat
     4321 gaacgccgaa caatcggaaa tattccggcg cgacggcgaa atcaactact ccgtccagtc
     4381 gcgcagcggc acgcgctacc gcgccaacgc ctaccacagc caaggcagcg caggtttggt
     4441 tttgcggcgc atcaaccacg tcatcccgca aatgcaggaa ttgggcctgc ccgaaaaact
     4501 caaagacctc gccgtcgcac cgcgcgggct gctgattatc gtcgggccta ccggttcggg
     4561 caaatccacc acgatggcga ctatgctcga acaccgcaac aaaaccctgc ccagccatat
     4621 cgttaccatc gaagacccga ttgagtttat ctacaaaccg cgccgctgca tctttaccca
     4681 gcgcgaaatc ggcgtcgaca ccataaactg gcagacggcg gtacaaaacg ctatgcgcca
     4741 gtcccccgac gtggtctgca tcggcgaagt ccgcagcagg gaaagtatgg aatacgcgat
     4801 gcagctcgcc caaaccggcc acctgtgcat ttttacgctc cacgccaaca ccgcgccgca
     4861 gtcgctcgaa cgcatactca acttctaccc caaagaacag cacaaccaaa tactgatcga
     4921 catcgccctc aacctgaccg gcatcatctg ccaacgcctc gccctcaaac aagacaaaac
     4981 gggcaggacg gcggttgtcg acttgctcat caacacgccc gccatccaag acttcatcct
     5041 gaagggcgac ctgatgaaca tcagtaaaat catggaaacc gccaaaaccg acggaatgca
     5101 gacgatggat caaaaccttt tcgaactgta ccgtcacggc atcatcagtt acgaagaagc
     5161 cctgcgccag tccgtttccg ccaacaacct gcgattgcac atccaactgc acaaagaagg
     5221 caaaacgccc gaactccttt acgacagggt caacggtctc aacctcattt cctgatccgc
     5281 aaaacccaat gccgtctgaa aaccgcatcc ccgttttcag acggcatgat tttatccgcc
     5341 ccattcatgt gctacacttt atagtggatt aaatttatag
//
LOCUS       DAXIFD010000134         5369 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.134, whole genome shotgun sequence.
ACCESSION   DAXIFD010000134 DAXIFD010000000
VERSION     DAXIFD010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5369
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.134"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(592..3318)
                     /locus_tag="ACFOCN_001653"
     CDS             complement(592..3318)
                     /locus_tag="ACFOCN_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HFC6970765.1"
                     /translation="MQQQHLFRLNILCLSLMTALPVYAENVQAEQAQEKQLDTIQVKA
                     KKQKTRRDNEVTGLGKLVKSSDTLSKEQVLNIRDLTRYDPGIAVVEQGRGASSGYSIR
                     GMDKNRVSLTVDGVSQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSS
                     EYGNGALAGSVAFQTKTAADIIGEGKQWGIQSKTAYSGKDHALTQSLALAGRSGGAEA
                     LLIYTKRRGREIHAHKDAGKGVQSFNRLVLDEDKKEGGSQYRYFIVEEECHNGYAACK
                     NKLKEDASVKDERKTVSTQDYTGSNRLLANPLEYGSQSWLFRPGWHLDNRHYVGAVLE
                     RTQQTFDTRDMTVPAYFTSEDYVPGSLKGLGKYSGDNKAERLFVQGEGSTLQGIGYGT
                     GVFYDERHTKNRYGVEYVYHNADKDTWADYARLSYDRQGIDLDNRLQQTHCSHDGSDK
                     NCRPDGNKPYSFYKSDRMIYEESRNLFQAVFKKAFDTAKIRHNLSINLGYDRFKSQLS
                     HSDYYLQNAVQAYDLITPKKPPFPNGSKDNPYRVSIGKTTVNTSPICRFGNNTYTDCT
                     PRNIGGNGYYAAVQDNVRLGRWADVGAGIRYDYRSTHSEDKSVSTGTHRNLSWNAGVV
                     LKPFTWMDLTYRASTGFRLPSFAEMYGWRAGESLKTLDLKPEKSFNREAGIVFKGDFG
                     NLEASYFNNAYRDLIAFGYETRTQNGQTSASGDPGYRNAQNARIAGINILGKIDWHGV
                     WGGLPDGLYSTLAYNRIKVKDADIRADRTFVTSYLFDAVQPSRYVLGLGYDHPDGIWG
                     INTMFTYSKAKSVDELLGSQALLNGNANAKKAASRRTRPWYVTDVSGYYNIKKHLTLR
                     AGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEMKF"
     gene            complement(3405..5204)
                     /locus_tag="ACFOCN_001654"
     CDS             complement(3405..5204)
                     /locus_tag="ACFOCN_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6970766.1"
                     /translation="MNNPLVNQAAMVLPVFLLSACLGGGGSFDLDSVETVQDMHSKPK
                     YEDEKSQPESQQDVSENSGAAYGFAVKLPRRNAHFNPKYKEKHKPLGSMDWKKLQRGE
                     PNSFSERDELEKKRGSSELIESKWEDGQSRVVGYTNFTYVRSGYVYLNKNNIDIKNNI
                     VLFGPDGYLYYKGKEPSKELPSEKITYKGTWDYVTDAMEKQRFEGLGSAAGGDKSGAL
                     SALEEGVLRNQAEASSGHTDFGMTSEFEVDFSDKTIKGTLYRNNRITQNNSENKQIKT
                     TRYTIQATLHGNRFKGKALAADKGATNGSHPFISDSDSLEGGFYGPKGEELAGKFLSN
                     DNKVAAVFGAKQKDKKDGENAAGPATETVIDAYRITGEEFKKEQIDSFGDVKKLLVDG
                     VELSLLPSEGNKAAFQHEIEQNGVKATVCCSNLDYMSFGKLSKENKDDMFLQGVRTPV
                     SDVAARTEANAKYRGTWYGYIANGTSWSGEASNQEGGNRAEFDVDFSTKKISGTLTAK
                     DRTSPAFTITAMIKDNGFSGVAKTGENGFALDPQNTGNSHYTHIEATVSGGFYGKNAI
                     EMGGSFSFPGNAPEGKQEKASVVFGAKRQQLVQ"
BASE COUNT         1256 a         1368 c         1185 g         1560 t
ORIGIN      
        1 tcaccgcatc aaaggttttt gggaatacgg cggtttcggt tttcggtggg aatgggcgga
       61 atggataaca ttgacggagt tgggggaata ggtggaaacg gtgggattgg tgggctgaag
      121 cccaccctac agccagccct atgtccacgc tgcacatcct acgcccgcct tgcgtttctt
      181 ataagcagca ttttacgcaa tactttgcgt ccgctgaaaa aatttcaaac ggtctttttt
      241 atcaaatgcg aaaaatataa cgtcattccc gcgcaggcgg gaatctagtc tgtcggtgcg
      301 gaaacttatc ggataaaacg gtttctttag attttacgcc ctagattccc gcctgcgcgg
      361 gaatgacggg atttgaggtt tctgtttttg attttccgcc ttcgcgggaa tgacggttta
      421 gaagttaccc gaaacctcaa aaaaaaccga aaccgaacgg tctggattcc cgcctgcgcg
      481 ggaatgacgg gtttcgagat tacggtgtat cggggatgat gggaaacggt gggaattgtg
      541 taaaaaatgc cgtctgaagc ctttcagacg gcatttgcgg cgtttggacg tttaaaactt
      601 catttccaag ctaaatgtgt agtttcggcc gggggcggca tatcggttgt aaacgccgac
      661 atttttgtgt tggttgactg cgccgccggc agtttgccgc acattttccc aagtaacata
      721 gcggtagttg aggaggttgt acacacctgc gcgcagggtc aggtgtttct tgatattgta
      781 atatccggaa acatccgtaa cataccaagg ccgcgtccgc cgtgatgctg cttttttagc
      841 attggcatta ccgttcaaca gcgcctggct gccgagcagt tcgtcaacag attttgcctt
      901 ggaataagta aacatcgtat tgatgcccca tattccgtca ggatggtcgt aacccaaacc
      961 caatacatat cgtgaaggtt ggacggcatc aaagagatat gaagttacaa acgtcctgtc
     1021 ggcgcgtata tcggcatctt tgaccttgat acggttatag gcaagcgtgg aatacaaccc
     1081 gtccggcaac ccgccccata cgccgtgcca atcgatttta cccaaaatat tgataccggc
     1141 tatccgtgca ttttgggcat ttcggtatcc ggggtcgcca gaagccgaag tttgcccgtt
     1201 ttgagttcgg gtttcataac cgaatgcaat caggtcgcga taggcattgt tgaaatagct
     1261 ggcttccaaa ttgccgaagt cccctttaaa tacaatacct gcctctctat taaaggattt
     1321 ttccggtttc agatccaacg ttttcaaaga ctccccggct ctccagccat acatttcggc
     1381 aaacgacggc agacggaagc ccgtagaagc gcgataagtc aaatccatcc aggtgaaagg
     1441 tttgaggact acgcccgcgt tccaagaaag gttgcggtga gtgccggtag agacactctt
     1501 atcttccgaa tgcgtgctgc ggtaatcgta acgtatgcct gctccgacat ccgcccacct
     1561 gcccaaacgg acattgtctt gaacggctgc ataataaccg ttgccgccga tattcctcgg
     1621 tgtgcagtct gtataggtgt tattgccgaa acggcatatc ggcgatgtat tgaccgtggt
     1681 cttgccgata gacaccctat acgggttgtc tttgcttccg ttgggaaacg gaggcttttt
     1741 cggggttatc aaatcatatg cctgaactgc gttttgaaga taataatcgc tgtgggacaa
     1801 ttgcgactta aagcggtcgt accctagatt gatactcaaa ttgtgacgga ttttggccgt
     1861 atcaaatgcc tttttaaata ctgcttggaa caggtttcgg ctttcttcat aaatcatccg
     1921 gtcggattta tagaaagaat acggtttatt gccgtcggga cggcaatttt tatccgaacc
     1981 gtcgtgagag caatgcgtct gctgcaaacg gttgtccaaa tctatacctt gccggtcata
     2041 agaaagtcgg gcgtaatcgg cccaggtatc cttatcagca ttatggtaaa catattcgac
     2101 cccgtagcgg tttttagtat ggcgttcatc ataaaacacg ccggtaccgt aaccgatacc
     2161 ctgcaatgta ctgccctctc cctgaacaaa cagcctttct gccttattat cgcccgaata
     2221 tttgccaaga cctttcagcg aaccgggtac ataatcttca ctggtaaaat aggcaggaac
     2281 agtcatatcc cgtgtatcaa aggtctgctg cgtacgttcg agaacggctc cgacataatg
     2341 gcggttgtcc aaatgccaac ccggtcggaa cagccatgat tggctgccat actcaagcgg
     2401 gttcgcaagt aagcggttgg agccggtata atcctgcgtg ctgacggttt tgcgctcatc
     2461 tttgaccgag gcatcttctt tcagcttgtt tttacaggcc gcatatccat tgtggcattc
     2521 ttcttcgaca atgaaatatc tgtactgact gccaccctcc ttcttgtcct cgtccaacac
     2581 cagccggttg aagctctgca cacccttgcc ggcatcttta tgcgcatgga tttcccgacc
     2641 ccgccgttta gtataaataa ggagggcttc cgcgccgccg ctgcgtccgg caagcgcaag
     2701 ggattgcgtc agggcatggt cttttcccga ataggcagtt ttactctgaa tgccccactg
     2761 ttttccctct ccgataatgt cggctgcggt tttggtttga aatgcgaccg aacctgccaa
     2821 tgcgccgttt ccgtattctg atgaattcga acccttgctg atttcaacgg ccttgacgtt
     2881 ttcatactcg atttcattga ttgcgccgct gctacccgcc gtcctcgtcc cacccaatgc
     2941 cgcctgcgcg gtgtaggact gtatttgcga aacgccgtct accgttaagg aaacgcggtt
     3001 tttatccatg ccgcgtattg aatagccgga acttgcgccc cgaccctgtt cgaccacggc
     3061 aatacccgga tcataacggg tcaggtctcg gatattcaaa acctgttctt tacttagcgt
     3121 atcggaagac ttgaccaact tgcccagccc ggttacttcg ttatcgcggc gggttttctg
     3181 ttttttggct tttacctgta tggtatccaa ctgtttttcc tgtgcttgtt cggcttgcac
     3241 attttctgca taaacgggca gcgcggtcat taaagacagg cataaaatat ttaatcggaa
     3301 caaatgttgc tgttgcatag tgtttcccta atcttcgctt tcagacggca tcggaaggaa
     3361 cggtgccgtc tgaagcctta ttctcgattg ttcggcagcc gtgcttattg cacaagctgt
     3421 tggcgtttcg caccgaatac caccgatgct ttttcttgtt ttccctctgg tgcatttccc
     3481 ggaaatgaga acgatccgcc catctcgatg gcgtttttgc cgtagaaacc gccggataca
     3541 gtggcttcaa tatgcgtata gtgggaattt ccggtatttt gcggatccag cgcaaagccg
     3601 ttttcaccgg ttttcgccac acctgaaaaa ccgttgtcct taatcatggc agtaatagta
     3661 aacgcaggag acgtacggtc ttttgccgtc agtgtgccac tgattttttt agtggaaaaa
     3721 tccacgtcaa actctgccct attaccacct tcctgattgg aggcttcgcc gctccagctt
     3781 gtgccgttgg caatatatcc gtaccaagta ccgcgatatt tggcgtttgc ctccgtcctt
     3841 gccgccacat cggatactgg agtgcggaca ccttgcagga acatatcgtc tttattttct
     3901 tttgacagct tcccaaaact catgtaatcc aagttggaac aacacaccgt tgccttcacg
     3961 ccgttttgct caatctcgtg ctgaaatgcc gccttattgc cctcagacgg cagcagtgaa
     4021 agctccactc cgtcaaccag cagctttttc acatctccaa aactgtctat ttgctctttc
     4081 ttaaactcct cgccggtaat acggtatgca tctatcacgg tttccgttgc aggccctgcc
     4141 gcgttttccc catccttctt atctttctgc ttcgcaccaa acaccgctgc aactttgttg
     4201 tcgttgctca agaatttacc ggcaagttcc tcgcctttcg gcccgtaaaa tccgccttcc
     4261 aaactgtcgg agtcggaaat aaagggatga cttccatttg ttgcaccttt atctgccgcc
     4321 aacgccttac ctttgaaacg gttgccgtga agagttgctt gaatggtgta acgcgtagtt
     4381 tttatttgtt tgttttcact attattttga gtaatacggt tgttacgata aagtgtgccc
     4441 tttattgttt tatcagaaaa atcaacctca aactcactag tcataccaaa atcggtatga
     4501 ccggatgatg cctctgcctg attacgcaat accccttctt ctaatgcaga caacgccccc
     4561 gatttatctc ctcctgctgc actacccaat ccttcaaacc tttgtttttc catagcatca
     4621 gtaacataat cccaagtacc tttataagtt atcttttccg atggcagctc cttggaaggt
     4681 tctttccctt tatagtaaag atatccgtca ggtccaaaaa gaactatatt attcttaata
     4741 tcaatattat ttttattaag gtaaacatat cccgaacgga cataagtgaa atttgtataa
     4801 ccaactacac gactttgccc atcttcccat tttgattcaa taagttcaga actaccccgt
     4861 tttttttcca attcatccct ctcactaaaa ctatttggtt ctcctctttg cagttttttc
     4921 caatccattg aacccaatgg tttgtgcttt tccttatatt taggattaaa atgtgcattc
     4981 cggcgaggta gttttactgc aaagccataa gccgcgccgc tgttttccga tacatcctgt
     5041 tggctttcag gctggctttt ttcatcctca tacttaggtt tggagtgcat atcttgcacg
     5101 gtttccacgc tgtccaaatc gaaactgccg ccgccaccca gacaagcact caacaaaaac
     5161 acaggcagca ccatagcagc ctgatttacc aatggattgt tcatataaac ccaattcaat
     5221 taaagaatga taaggattat tattttattt atttttaaca aatttgcaaa tactttttta
     5281 tttttttagg gaatacacca aaatcccgtc attcccgcgc agtcgtgaat ccgaacgcgt
     5341 ccgcacggaa acctatatcc cgtcattcc
//
LOCUS       DAXIFD010000135         5346 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.135, whole genome shotgun sequence.
ACCESSION   DAXIFD010000135 DAXIFD010000000
VERSION     DAXIFD010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5346
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.135"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..242
                     /locus_tag="ACFOCN_001655"
     CDS             <1..242
                     /locus_tag="ACFOCN_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970767.1"
                     /translation="SDKDNAIIILSDLILLEDGYIRYDYDPEHENGNLHPLHHYDIFY
                     QNKNTFKIGLKSAIGCKEFIELLDCTEERSFLSKL"
     gene            complement(356..541)
                     /locus_tag="ACFOCN_001656"
     CDS             complement(356..541)
                     /locus_tag="ACFOCN_001656"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970768.1"
                     /translation="MFDKQARFWIGEFDGEKECAAGNEVSAITRHRIFVFGLNVGEGT
                     VCCLGFNFVEVEVFRRH"
     gene            564..893
                     /locus_tag="ACFOCN_001657"
     CDS             564..893
                     /locus_tag="ACFOCN_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6970769.1"
                     /translation="MDVQKQYPFETVAVCVLPNHIHAIWTLPPDDADYSLLRRLIKTK
                     FSAYSPYTKNLSAGKQRQHERGIWQRRFYGHTVRDETDLQRCADYIHSNPIKQKMSRA
                     KTESCKK"
     gene            complement(1128..2018)
                     /gene="sucD"
                     /locus_tag="ACFOCN_001658"
     CDS             complement(1128..2018)
                     /gene="sucD"
                     /locus_tag="ACFOCN_001658"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HFC6970770.1"
                     /translation="MSVLINKDTKVLVQGFTGKNGTFHSEQALAYGTKVVGGVTPGKG
                     GQTHLNLPVFNTMKEAVKETGADASVIYVPAPFVLDSIVEAVDSGVGLVVVITEGVPT
                     LDMLKAKRYLETNGNGTRLVGPNCPGVITPDECKIGIMPGHIHTPGRIGIISRSGTLT
                     YEAVAQTTKLGLGQSTCIGIGGDPIPGMNQIDALKLFQEDPDTDAIIMIGEIGGTAEE
                     EAAEYIQSNVTKPVVGYIAGVTAPKGKRMGHAGAIISGGKGTAEEKFAAFEKAGIAYT
                     RSPAELGTTMLEVLKTKGLA"
     gene            complement(2029..3243)
                     /gene="sucC"
                     /locus_tag="ACFOCN_001659"
     CDS             complement(2029..3243)
                     /gene="sucC"
                     /locus_tag="ACFOCN_001659"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HFC6970771.1"
                     /translation="MWRQTRGHSTNLKEKSMNLHEYQAKELLAGYGLPVQGGILAHNG
                     EEAAAAYDKLGGKFAVVKAQVHAGGRGKAGGVKVVKSREEAKEVAESLIGTNLVTYQT
                     DANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEK
                     IFKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPL
                     AVRENGALACVDGKIGIDSNALYRLPKIAELRDKSQENERELKASEFDLNYVALEGNI
                     GCMVNGAGLAMATMDIIKLKGGQPANFLDVGGGATKDRVVEAFKLILEDKSVQGVLIN
                     IFGGIVRCDMIAEAIVAAVKEINVDVPVVVRLEGNNAELGAKILNESGLKLTSADGLN
                     DAAEKIVAAVNA"
     gene            complement(3295..3582)
                     /locus_tag="ACFOCN_001660"
     CDS             complement(3295..3582)
                     /locus_tag="ACFOCN_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970772.1"
                     /translation="MNKEIVGIFFIPAGIISMCMAVLWQMYVMMTETYTLNRFKDKEL
                     VWRVALLFISFSLAVYLLCPNSRKKGIVFFILGGGGAAMYLLARMWLPFSK"
     gene            complement(3707..5140)
                     /gene="lpdA"
                     /locus_tag="ACFOCN_001661"
     CDS             complement(3707..5140)
                     /gene="lpdA"
                     /locus_tag="ACFOCN_001661"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6970773.1"
                     /translation="MSQYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNAPA
                     LGGTCLNVGCIPSKALLQSSEHFHAAQHEFAEHGITVGDVKFDVAKMIERKDAIVTKL
                     TGGVKFLFQKNKVTSLFGTASFAGKNGDAYQIEVDNKGEKTVIEAKHVIVATGSVPRP
                     LPQVAIDNVNVLDNEGALNLTEVPAKLGVIGSGVIGLEMGSVWNRVGAEVTILEAAPT
                     FLAAADQQIAKEAFKYFTKEQGLSIELGVKIGDIKSEGKGVSVAYETAAGEAKTEVFD
                     KLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIGDVVRGPMLAHK
                     ASDEGVAVAERIAGQKPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEGVEYKKGTSGF
                     GANGRALAMGKAKGTVKVLADAKTDRILGVHMIGPVVSELVTEGVTALEFFASSEDIA
                     RIIHAHPTLSEVVHEAALAADKRALHG"
BASE COUNT         1269 a         1360 c         1262 g         1455 t
ORIGIN      
        1 attctgataa ggataatgct attattatat taagcgatct aattttattg gaggatgggt
       61 atattcgata tgattatgat cctgagcatg aaaatggtaa tttgcatcct ctacatcatt
      121 atgacatttt ttatcaaaac aaaaatactt ttaaaattgg tttaaagtca gccatcggat
      181 gcaaggaatt tattgaatta ctggattgca ccgaagaaag aagctttctt agcaaactgt
      241 agtctgcata ctcaacccac agcgtgcgtg gctgcaccac acacgcgggt tgcttgattg
      301 tcggtttgcc attttcaaat ttgctttcgt tgaagctagc gctttcagac ggcctctaat
      361 gtcgtctgaa aacctcaact tcaacaaagt taaaccctaa acaacaaacc gttccttctc
      421 caacgttcaa accaaaaaca aaaatcctat ggcgcgttat cgcagaaact tcattgccgg
      481 cggcacattc tttttcaccg tcaaactcgc cgatccaaaa tcgcgcctgc ttgtcgaaca
      541 tatcggcttc gcgtgcggct tatatggatg tgcaaaaaca atatcccttt gaaaccgtcg
      601 ccgtatgcgt gctgccgaac catattcacg ccatttggac gctgccgccc gacgatgcgg
      661 attattccct actccggcgg ctgattaaaa ccaaattctc cgcatattcc ccttatacta
      721 aaaacttatc cgccggcaaa cagcggcagc acgaacgcgg tatttggcaa cggcgttttt
      781 acggacacac cgtgcgcgac gaaacggatt tgcagcgttg cgcggactac atccattcca
      841 atcctatcaa acaaaaaatg tcgcgtgcta aaacagaatc ctgcaaaaaa taatatcagt
      901 cttttcaaat gcgatagtta tcattcccca acttcaaaca aggcgtgtgc aacctgactt
      961 acgggtttgc tcctgtttga ccgataaata ttctgcctgc ctcaaagggc aaaaataatg
     1021 tgggtatgtt gaggctgcct ctttttgaaa tgacaaacaa aatgccgtct gaaacccgat
     1081 ttccggtttc agacggcatt tgatgttcaa tcagttgtca aacctgatta tgccaaacct
     1141 tttgttttca acacttccag catggtagtg cccaactcgg cagggctgcg ggtgtaagcg
     1201 ataccggctt tttcgaaagc ggcgaatttt tcctcggcag tacctttacc gccggaaata
     1261 atcgcaccgg cgtggcccat acgtttgcct ttaggagcgg taacaccagc aatgtaacct
     1321 acaacaggtt tggttacgtt ggattggatg tattcggctg cttcttcttc cgcagtaccg
     1381 ccgatttcac cgatcatgat gatggcgtcg gtatccgggt cttcttggaa gagtttcagt
     1441 gcgtcgattt gattcatacc aggaatcggg tcgccgccga taccgataca ggttgattga
     1501 cccaagccca gtttggtggt ttgtgccacg gcttcgtaag ttaatgtacc ggaacgggaa
     1561 ataataccga tgcggcccgg agtgtggatg tggcccggca taataccgat tttgcactca
     1621 tccggagtaa tcacgcctgg gcagttaggg ccgaccaagc gggtaccgtt gccgttggtt
     1681 tccaaataac gtttggcttt gagcatgtcc agagtaggca cgccttcggt aatcacaacg
     1741 accaagccta cgcctgaatc aacggcttca acgatagaat ccaacacaaa cggagcggga
     1801 acgtaaatta cagatgcatc cgcgccggtt tctttaaccg cttctttcat ggtgttgaat
     1861 acaggcaggt tcaggtgggt ttgaccgcct ttgcccgggg taacgccgcc gacaacttta
     1921 gtgccgtaag ccagagcttg ttcggagtgg aaagtaccgt ttttaccggt gaaaccttga
     1981 accaatactt tggtgtcttt attaatcaat acgctcattc ttttctcctt aggcgtttac
     2041 ggctgcgaca attttttcgg ctgcgtcatt caggccgtct gcagaagtca gtttcagacc
     2101 tgattcgttc aggattttcg cgccgagttc ggcgttgttg ccttccaaac gaacaacgac
     2161 aggaacgtcg acgttgattt ctttaacggc tgccacgatg gcttccgcaa tcatgtcgca
     2221 acgtacgata ccgccgaaga tgttgatcaa tacgccttga acggatttgt cttccagaat
     2281 cagtttgaac gcttcaacca cgcggtcttt ggttgcgccg ccgccaacgt ccaagaagtt
     2341 ggcaggttgg ccgcctttca gtttgatgat gtccatagtg gccatcgcca aaccggcacc
     2401 gttcaccata cagccgatgt tgccttccag ggcaacatag ttcaggtcaa attcagaagc
     2461 tttcaactcg cgttcgtttt cttgagattt gtcgcgcaat tcggcgattt tcggcaggcg
     2521 gtagagcgcg ttgctgtcga tgccgatttt gccgtccacg caggcgagcg cgccgttttc
     2581 gcgaactgcc agcgggttga cttcaaacag ggcgaagtca ttttcgacaa acgctttgta
     2641 cgcaccggtc atcagtttga cgaactcgtt gatttgtttg tctttcaagc ccagttggaa
     2701 cgcaacttcg cgagcttggc aaggttgcag gccgaccagc ggatcaacgg ttactttgaa
     2761 gattttttca ggagtttcgg cagcaacttt ttcgatttcc acgccgcctt cggtagaggc
     2821 catgaatgta atgcggcggg tagaacggtc aaccactgcg cccaagtaca gctcggtttg
     2881 aaccggatac atgtcttcgc aaaccaaaac gctgttgaca ggttggccgt tggcatcagt
     2941 ttggtaagtt accaagttgg tgccaatcag gctttcagcc acttctttag cttcttcgcg
     3001 gcttttaacg acttttacgc cgcccgcttt accgcggccg ccggcgtgta cttgtgcttt
     3061 gacaacagcg aatttgccgc ccaatttgtc gtaagctgca gcggcttctt cgccgttgtg
     3121 tgccaaaata ccgccttgta cgggcaaacc gtagccagcc agcagttctt tagcctgata
     3181 ctcgtgtaaa ttcatggatt tctcctttag attagtggaa tgcccccgag tttgcctcca
     3241 aatggcaagc ccgtgcgttt cagactacct ttcggcggtc ggaaaatcgt cgtttcactt
     3301 gctgaaaggc aaccacatcc gcgccagcag atacatggct gcaccgcctc ccccgagaat
     3361 aaaaaagacg atgccttttt tacgcgaatt cgggcagagc agataaacgg caaggctgaa
     3421 actgataaac aacaatgcca cgcgccaaac caattcttta tctttgaaac ggttgagcgt
     3481 ataagtttcg gtcatcatca catacatctg ccacaatacg gccatacaca tgctgatgat
     3541 gcccgccggt ataaagaaaa taccgactat ttctttgttc ataatgaatg taaatgctgt
     3601 ttgtttgtct gacggaatta taaatcagaa aacgaagctc tcggaacatt caatttgtcg
     3661 gaggccttaa ggccgtctga aaagtttcag acggccttaa tgtctatcaa ccgtgcaaag
     3721 cgcgtttgtc ggccgccaat gcagcttcgt gaaccacttc ggacaaggtt gggtgggcat
     3781 ggataatgcg ggcgatgtct tcgctgctgg cgaagaattc gagcgcagtc acgccttcgg
     3841 taaccaattc gctgacaacc ggaccaatca tgtgtacgcc caagatgcgg tcggttttgg
     3901 catctgccaa cactttaacc gtacctttgg ctttgcccat tgccaatgcg cgaccattcg
     3961 caccaaaacc tgaagtacct tttttgtact ccacgccttc ggctttgagc tgctcttcgg
     4021 ttttacccac ccaagcgatt tcaggatcgg tgtaaatcac gaacggtacg ttgttgaagt
     4081 cgatatgcgg tttttgaccg gcaatgcgtt cggcaacggc aacgccttcg tcgctggctt
     4141 tgtgtgccaa catcgggccg cgaaccacgt cgccgattgc ccatacgtta ggcaggttgg
     4201 tacggcattc gccatctact ttgataaagc cgcgctcgtc tttttccaag cctacggctt
     4261 ccgcgttcag gcctttggtg tttggaatac ggccgatggc aacgatcagt ttgtcgaata
     4321 cttcggtttt ggcttcgcca gcagcagttt cgtaagcaac ggaaacacct ttgccttcag
     4381 acttgatgtc gccgattttc acgcccaatt cgatgctcag accttgctct ttggtgaagt
     4441 atttgaaggc ttctttggcg atttgttggt cggcggcagc caggaaggtc ggcgcggctt
     4501 caagaatggt aacttccgca cccacgcggt tccatacgga acccatttcc aaaccaatca
     4561 caccggaacc gatcacgccg agtttggcag gtacttcggt caggttcaat gcgccttcgt
     4621 tgtccaatac gttcacattg tcgatagcga cttgcggcaa cggacgcggt acggaaccgg
     4681 tcgctacgat gacgtgtttg gcttcgataa cggttttctc acctttgtta tcgacttcga
     4741 tttggtaagc atcgccattt ttgccggcaa aggaagccgt accgaacagg ctggttactt
     4801 tgtttttctg gaacaggaat ttcacgccgc cggtcagttt ggttacgatg gcatctttgc
     4861 gctcaatcat tttggccacg tcgaatttta cgtcgccgac agtgataccg tgttcggcaa
     4921 actcgtgttg cgctgcgtgg aaatgttcgc tggattgcaa cagggcttta gaagggatac
     4981 aacctacgtt caagcaagta ccgcccaatg caggggcatt gcctgctttg ttaacgcctg
     5041 catcgacaca ggcagttttg aaacccagtt gtgcggcacg gatggcggca acgtatccgc
     5101 ccgggcctgc accaatcact actacatcat attgagacat cgtgtcatcc tttgctttta
     5161 gcagtatctc aaaataaaaa cgatactttt cgtttctttt ttattttgaa tgactgcgtt
     5221 ttgatggttt taagaaaaag ccgtctgaaa gtccatatct gccgattcat tcgaatcaaa
     5281 tgtttcagac ggtctcaatc gtttgttgag cctattgtag cacgatacta cattacgcta
     5341 catcta
//
LOCUS       DAXIFD010000136         5321 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.136, whole genome shotgun sequence.
ACCESSION   DAXIFD010000136 DAXIFD010000000
VERSION     DAXIFD010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5321
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.136"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            295..1728
                     /locus_tag="ACFOCN_001662"
     CDS             295..1728
                     /locus_tag="ACFOCN_001662"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HFC6970774.1"
                     /translation="MNEYSQLIKHPDISLSPISDSIGIGNPATGEILAYVRNTGSDKL
                     KNLIQKAAAAQKLWAAKTALERADILWRWYFLVKENKEALARLMTMEQGKSLTEARGE
                     IDYAASFVRWFAEEARRIDGDVLTSVKASQKLVVLKQPVGVTAAITPWNFPSAMIARK
                     AAPALAVGCAMIVKPASLTPLSAYALASLAYEAGIPQDLLPVVSGSASEIGHEFATNP
                     IIRKISFTGSTEVGAKIFADSAADIKKLSLELGGNAPFIVFDDADLDKAVEGALASKF
                     RNSGQTCVCTNRVYAQSAIYDEFCRKLSEKAAALKLGNGLEDGVNQGPLIEEKAVEKV
                     EQHIADALAKGASCLTGGKRSALGGTFFEPTVLSGVTAQMAVAREETFGPLCPVFRFE
                     TEAEVIEAANNTEYGLAAYLFTADTARQWRVGEALEYGMVGINTGLISNEAAPFGGVK
                     RSGLGREGSKYGADEYLELKYLCMDVG"
     gene            1837..2625
                     /locus_tag="ACFOCN_001663"
     CDS             1837..2625
                     /locus_tag="ACFOCN_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimb protein"
                     /protein_id="HFC6970775.1"
                     /translation="MMENGKTVPRWRFALKSAGWHLLISLSVAGLAALLVFKVWYPYP
                     YAELTGGLSLYQLVVAVDIVCGPLLTLILASPKKKTKARMVDFSMVGIIQLAALVYGL
                     HSVSLARPVVEAFEQDRMTIVTAAEVVVEDLHKAPEGLQSLSWFGIRRIALKEPEDAD
                     EKNKTLDLSLKGIEPSMRPDQWLPYSDKEAEEIRKHLKPLKVLADARKTTVADILKQA
                     GLAEGEELYYLPFTSSRQKEWIVITDKEGNTKGYAPIDGFIITP"
     gene            2993..4549
                     /locus_tag="ACFOCN_001664"
     CDS             2993..4549
                     /locus_tag="ACFOCN_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HFC6970776.1"
                     /translation="MDFSWLAEPHTWIGFATLLVLEVVLGIDNLVFVAILANKVQPAR
                     RDRARIIGLGLAVVIRIIMLAFMAHIITLTEPLFQIGGLAVSGKDMIMLAGGIFLLYK
                     ATTELHERLEGHNRFTVADNQKKHAPFWGVVAQILILDAVFSIDSVITAVAMVDHIVV
                     AMGAVVVAMAVMISASKLLTEFVDRHPTVVMLCLGFLLMIGFSLIAEAFHFHIPKGYL
                     YAAIGFSILIELFNQISQRNSRKNDYIGSSWRKRTAENVLGMMGIRESVLADAGGESG
                     DDAHFEENEKSMIRSVLTLAERPIMGVMIPRRDIERLDISQSREEQCAQLQNTPYSRL
                     LVVGKAGVDEPLGYINKKDLLSQLLETGGLDIQTALRQPLVLPDSTTALGAIELFRQS
                     SADYALVVDEFGAVLGMVTMKDLLETIAGEFPEEFEREEEPAVQGNPDESLTVEGALE
                     YVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE
                     RVKITKLPEE"
     gene            4566..5312
                     /gene="surE"
                     /locus_tag="ACFOCN_001665"
     CDS             4566..5312
                     /gene="surE"
                     /locus_tag="ACFOCN_001665"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HFC6970777.1"
                     /translation="MNVLISNDDGYLSEGIAVLARVTAEFANVRVVAPERDRSGVSNS
                     LTLERPLQLKQAQNGFYYVNGTPTDCIHIGQSVFSDFQADFVFSGINRGANMGDDTLY
                     SGTVAAATEAYLMGIPAVAFSLNDASGRYWATAEKALWTLLAHFFKNPPQSPILWNIN
                     IPAVEPEDVRGIKIARLGRRHHGQNVIPARNPRGEQIYWIGPVGRVSDKEEGTDFGEC
                     GAGFITVTPLQIDLTAYPDMAETAAFWHAD"
BASE COUNT         1248 a         1342 c         1515 g         1216 t
ORIGIN      
        1 gtttggattt ttgccatact ctaccacacg ttgcaactgc aatctttgtt ccttatatat
       61 tatcaaaggg ctgcattact tttctttcta aattaccatt gtataaaaag tatttttctt
      121 aaacgacagg gattgcgccc gcgccatatt cagacaccgc ccggatgttg cactgcccga
      181 tcggatgctt cagacggcat cggaagggtt tgcagttttg gaatatgaag atgataatgt
      241 ccgcgagatt gacggcattt gaaagcggtt attccgcata ccggaggata cgaaatgaac
      301 gaatattccc aattaatcaa gcatcccgat atttcccttt ccccgatttc agacagcatc
      361 gggatcggca atccggcgac gggtgaaatt ttggcgtatg tccgcaacac gggttcggac
      421 aaactgaaaa acctgattca aaaggcggcg gcagcgcaaa aattatgggc ggcgaaaact
      481 gctttggaac gcgccgacat attgtggcgt tggtattttt tagttaaaga aaacaaagaa
      541 gcactggcgc gcctgatgac gatggagcag ggcaaaagcc tgaccgaggc gcgcggcgag
      601 attgattatg cggcttcgtt tgtgcgctgg tttgcggaag aggcgcggcg gattgacggc
      661 gatgtgttaa cgagtgtaaa agcgtcgcaa aaactggttg tgttgaaaca gcctgtcggc
      721 gttaccgccg cgattacgcc gtggaacttc ccatctgcga tgattgcgcg caaggccgcg
      781 cctgctttgg cggtgggttg cgcgatgatc gtcaaacccg catcgctcac gcctttgagt
      841 gcgtatgcct tggcttcgtt ggcttacgaa gcgggcatac cgcaggattt gttgcctgtt
      901 gtcagcggca gtgcttcgga aatcggccat gaatttgcta cgaacccgat tatccgcaaa
      961 atcagcttca ccggctcgac cgaagtcggc gcaaaaattt ttgccgacag cgcggcggac
     1021 attaaaaaac tcagtttgga gctgggcggc aacgcgccgt ttatcgtgtt tgacgatgcc
     1081 gatttggaca aagccgtcga aggcgcgctc gccagcaagt tccgtaacag cggtcagacc
     1141 tgcgtctgca ccaaccgcgt ttacgctcaa tccgccattt acgacgaatt ttgccgcaaa
     1201 ttgagtgaaa aagcagccgc gctcaaattg ggcaacggct tggaggatgg tgtgaaccaa
     1261 gggccgctga ttgaggaaaa agcggtggag aaagtcgagc agcacatcgc cgacgcgctt
     1321 gctaaaggtg caagctgcct gaccggcggc aaacgcagcg cgttgggcgg aacgtttttc
     1381 gaaccgactg ttttaagcgg cgtaacggcg caaatggcgg tggcacgcga agaaaccttc
     1441 gggccgttgt gtccggtatt ccgttttgaa accgaagccg aggtcatcga ggctgcgaac
     1501 aatacggaat acggtttggc agcttacctt ttcaccgccg acaccgcccg ccaatggcgc
     1561 gtcggcgaag ccttggaata cggtatggtc ggcatcaata cgggcttaat cagcaatgaa
     1621 gcggcaccgt tcggcggcgt gaaacgtagc ggtttgggac gtgaaggcag caaatacggt
     1681 gcggacgaat atctagaatt gaaatatctg tgtatggatg tcgggtgacg gatgccgtct
     1741 gaacggcagg atttcagacg gcgccgcatt ttaagcagtc tctatctgtt gtacaatgcg
     1801 ccctgttttt acggttattt ttgatttgaa caagatatga tggaaaacgg aaaaacagtc
     1861 ccgagatggc gttttgcctt gaaaagtgcg ggctggcacc tcttaatcag cctgtcggtt
     1921 gcagggctgg cggcattgct ggtttttaag gtttggtatc cttatcctta tgccgagctg
     1981 acgggagggc tgtcgcttta tcagctggtg gtggctgtcg atattgtatg tggtccgctg
     2041 ctgactttaa ttttggcaag cccgaagaaa aagacaaagg cacgcatggt cgatttttcc
     2101 atggtcggca tcatccagct ggcggctttg gtgtacggtc tgcacagcgt ttcgctggcg
     2161 cgtcctgtgg tggaagcgtt tgaacaggat cgtatgacca ttgttacggc ggcggaagtc
     2221 gtggtcgaag atttgcacaa agcccccgaa gggctgcaaa gcctgtcgtg gttcggcatc
     2281 cgccgcattg cattgaaaga acctgaggat gcggatgaga agaacaagac gctggatttg
     2341 tccctgaaag gtatcgagcc gagtatgcgt cccgaccagt ggctgccgta ttccgacaag
     2401 gaagcagaag aaatccgcaa acatctgaaa ccgctgaaag tcttggcgga tgcgagaaaa
     2461 acgacggttg cggacattct gaaacaggca ggtctcgccg aaggggagga gctgtattac
     2521 ctgccgttta ccagcagcag gcagaaagag tggatagtca ttaccgataa agagggcaac
     2581 accaaaggct acgcgccgat agacggcttc atcatcaccc cttaagcgtt gggactccgt
     2641 ccgcactcga acatccgttc ttcgcggcgg tagaatcaga ctgtatttga gaggggcgca
     2701 acccctcaat cagggcaaca cataggggaa ggctttatgt gccgtccgtg tgttgaaaca
     2761 tttcaaaata agctcatgcc gtccgaacat cctttcagac ggtatggcat tttgccattg
     2821 ccccgataag ctgttaaact atttaaatta tttcgaccga aggtacacgc acatgcaaga
     2881 ccccgagcag agcagcaagc ccgcccgccg ttttttgtgc gtaccgtctg ttcaggcagc
     2941 ttgagcgctt caggctgcct tttcgcgttt gaacttgagg aatacgaaaa tcatggattt
     3001 cagttggttg gcagaaccgc atacctggat aggttttgcc acgcttttgg tgttggaagt
     3061 tgtattgggg atagacaatc ttgtctttgt ggcgattttg gcaaacaagg tccagcccgc
     3121 acggcgcgac cgcgcacgga ttatcgggct ggggctggca gtcgtcatcc gcatcattat
     3181 gcttgctttt atggcgcaca tcatcacgct gaccgagccg ctgttccaaa tcggcggcct
     3241 cgccgtttcc ggcaaggaca tgattatgct cgcgggcggt attttcctgc tttacaaagc
     3301 caccaccgaa ctgcatgaac gcctcgaagg gcacaaccgt tttaccgttg ccgacaacca
     3361 aaaaaaacac gcgccgtttt ggggcgtggt cgcgcaaatc ctgatactgg atgccgtgtt
     3421 ttccatcgat tcggtcatta ctgcggtggc gatggtcgat catatcgtcg tggcgatggg
     3481 tgcggtcgtc gtcgcgatgg ctgtaatgat ttctgccagc aaactcttga ccgaatttgt
     3541 cgacagacac cctaccgtcg tgatgctctg ccttggtttt ttgttgatga tcggtttcag
     3601 cctgattgcc gaagccttcc atttccacat tcccaaaggc tacctctacg ccgccatcgg
     3661 cttctcgatt ttaatcgaat tgtttaacca gatttcgcag cgcaacagcc gcaaaaacga
     3721 ctacatcggc agctcgtggc gcaagcgcac cgccgaaaac gtcttgggta tgatgggtat
     3781 acgcgaaagc gtgcttgccg acgcgggcgg cgaatccggg gacgacgcgc attttgaaga
     3841 aaacgaaaaa tcgatgatac gcagcgtgct gacgcttgcc gaacgcccga ttatgggggt
     3901 gatgatccca cgccgcgaca tcgaacggct ggacatttcc caaagccgcg aagaacagtg
     3961 tgcccaactg caaaacacgc cttacagccg cctgctcgtt gtcggtaagg cgggcgtgga
     4021 cgaacctttg ggctacatca acaaaaaaga cctgctgtcc caactgctgg aaacaggcgg
     4081 tctcgacatt cagacggcat tgcgccagcc actcgtcctg cccgacagca ccaccgcgct
     4141 gggcgcaatc gaactcttcc gccaaagcag cgcggattat gctttggtgg tggacgagtt
     4201 cggcgcggta ttgggcatgg taaccatgaa agacctgctc gaaaccatcg caggcgagtt
     4261 ccccgaagaa tttgagcgcg aagaagaacc agccgttcag gggaatcccg atgaaagcct
     4321 gacggtggaa ggcgcgttgg aatatgtgga actcgcaccg caactcaacc tgccgcagca
     4381 ggaggaagat gccgatttcc atacggttgc cgggctgatt atggaagaat tgcaaaccat
     4441 ccccgatgtc ggcgattttg ccgatttcca cggctggcgg tttgaagtgg tcgaaaaaga
     4501 agggcagcgc atcgagcggg tcaaaatcac caaattgccc gaagaataag cattcaggat
     4561 agaaaatgaa cgttttgatt tccaacgacg acggctacct ctccgaaggt attgccgttt
     4621 tggcgcgcgt tacggcggaa tttgccaacg tcagggtggt tgcgcccgaa cgcgacagga
     4681 gcggggtcag caattcgctg acgctggaac gccctttgca gttgaaacag gcgcaaaacg
     4741 ggttctacta tgtcaacggc acgccgaccg actgtatcca catcgggcag tctgtatttt
     4801 cggattttca ggccgatttt gtcttttcgg gcatcaaccg gggcgcgaat atgggggacg
     4861 acacgcttta ttcggggacg gttgcggcgg caaccgaagc ctaccttatg ggcatacccg
     4921 ctgtggcgtt ttccttaaac gacgcttccg gacgctattg ggcaaccgca gaaaaggcac
     4981 tgtggacatt gttggcgcat tttttcaaaa accccccgca gtcccctatt ttgtggaaca
     5041 tcaatatccc cgccgtcgag ccggaagatg tgcggggcat taaaatcgcc cgtttgggca
     5101 ggaggcatca cggtcagaac gtcatccccg cgcgcaatcc gcgcggcgaa cagatttatt
     5161 ggataggccc ggtaggcagg gtttccgaca aagaagaggg aacggatttc ggtgaatgcg
     5221 gcgcaggttt cattaccgta acgccgctgc aaatcgacct gaccgcctat ccggacatgg
     5281 cggaaacagc ggcgttctgg catgcggact gaccgtttca t
//
LOCUS       DAXIFD010000137         5247 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.137, whole genome shotgun sequence.
ACCESSION   DAXIFD010000137 DAXIFD010000000
VERSION     DAXIFD010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5247
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.137"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..506
                     /locus_tag="ACFOCN_001666"
     CDS             <1..506
                     /locus_tag="ACFOCN_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HFC6970778.1"
                     /translation="IFSPLASLLLPENYAAVRFIVVSCMLPPLFCTLVEISGIGLNVV
                     RKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACATSFWLFFVFKTESSCRLWQP
                     LKRLPLYTHTLLCLTSSAAYTCFGTPANYPLFAGVWAVYLAGCILRHWKDLHKLFHYL
                     KKQGFPL"
     gene            503..1574
                     /locus_tag="ACFOCN_001667"
                     /pseudo
     CDS             503..1574
                     /locus_tag="ACFOCN_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258336.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
     gene            1588..2760
                     /locus_tag="ACFOCN_001668"
     CDS             1588..2760
                     /locus_tag="ACFOCN_001668"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6970779.1"
                     /translation="MNITIVAPYCSLPSEPHFNRFWYLAELLSQSHDVLLITSNFKHY
                     DKSFRRPEDAEAASQGRLKVMLLEESGYSKNVSLGRVTSHHRFVKHFEKWLENCRPGE
                     QDVVFSAYPLIATNLLLGKHKARLGYKLIVDVQDVWPESFSSVVPFLKKVPHNLLPFA
                     SRANRAYRYADALVAVSQTYLDRAKETNPNVPGEVIYIGADFPKLDAAPAKDFGDDKT
                     RFFYLGTLSYSYDVETVCKGVRKLLDDGENVELHIMGGGPDLDRLKQYACDGIKFYGY
                     IPYAEMMSVSKGCDISVNAIHSHAMQSVTNKLSDYMALQKPILNSQVNDEVAEVLTLL
                     PHADYRSGDVDGFVQADKDILKRKNDPVQSEEIVRRFKRDVAYQKIVNLIERLAHE"
     gene            2753..3370
                     /locus_tag="ACFOCN_001669"
     CDS             2753..3370
                     /locus_tag="ACFOCN_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HFC6970780.1"
                     /translation="MNKFFKRLFDIIASASGLIILSPVFLILVYLIRKNLGSPVFFIQ
                     ERPGKDGRPFKMIKFRSMRDAIDKDGNPLPDSERLTDFGKKLRATSLDELPELWNVLK
                     GEMSLVGPRPLLMGYLPLYNEFQNRRHEMKPGVTGWAQVNGRNAISWDEKFAHDVWYI
                     DNFSFWLDIKILFLTVKKVFVKEGISAEGEATMPYFTGNKTDEKK"
     gene            3357..4331
                     /locus_tag="ACFOCN_001670"
     CDS             3357..4331
                     /locus_tag="ACFOCN_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HFC6970781.1"
                     /translation="MKKNNILILSAGRRVELVQDFQTEAARFSDGISVFATDLNPRMS
                     SACHVSDGSFEVPPISADSYIDSIFNLAVRENIGLIIPTIDTELQKLADERERFEAAS
                     VHIVVSDSDFIAQCRDKRKTATLFARYGIRSPEIYDRKKLVFPCFAKPYDGSRAIGAK
                     RIDTPADLTPEVLADTKLMFCQFIDIENKFSEFTVDMYYDRQCRLKCAIPRKRLEVRS
                     GEISKGVTCKNSLYQTLLEKMSVLQGARGCITAQFFYNEETGEFYGVEINPRFGGGFP
                     LTYAAGGNYPSRLMREYLGDEEIPFSDDWENNLIMLRYDAKVLVHEND"
     gene            4318..5004
                     /locus_tag="ACFOCN_001671"
     CDS             4318..5004
                     /locus_tag="ACFOCN_001671"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6970782.1"
                     /translation="MKTINPETTVIVFDLDDTLYSEYEYKLSGIRSVIDTVAALYPDW
                     NSDNLWRNIDPDGKDWLDKLCRHCGFNESEKQVLLWQYRLHRPTLTPYAPPDFLSELT
                     APFAARALITDGRSLTQRLKLEALGLSSLFDDILISEACSSEKPDSKRFRHLQDKYAD
                     KAGCFIYIGDNISKDFIAPNTLGWITIGLLPSGQNIHRHQPESFNTEYHPDFWVNSFQ
                     DLVPIIDSNT"
     gene            complement(5067..>5247)
                     /locus_tag="ACFOCN_001672"
     CDS             complement(5067..>5247)
                     /locus_tag="ACFOCN_001672"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970783.1"
                     /translation="LIAYAVPVLGFLRGSGFAGLPATVMPSGMSHTITAPAPIQLPSF
                     PNGVENVGRKAVYAP"
BASE COUNT         1275 a         1522 c         1254 g         1196 t
ORIGIN      
        1 gcattttctc gcccctcgcc tccctcctgc tgccggaaaa ctacgctgcc gtccggttta
       61 tcgtcgtatc gtgtatgctg ccgccgctgt tttgcacgct ggtagaaatc agcggcatcg
      121 gtttgaacgt cgtccgaaaa acacgcccga tcgcgctcgc caccttgggc gcgctggcgg
      181 caaacctgct gctgctgggg cttgccgtac cgtccggcgg cgcgcgcggc gcggcggttg
      241 cctgtgccac ctcattctgg ttgttttttg ttttcaagac agaaagctcc tgtcgcctgt
      301 ggcagccgct caaacgcctg ccgctttata cgcacacatt gctctgcctg acctcctcgg
      361 cggcctacac ctgcttcggc acaccggcaa actaccccct gtttgccggc gtatgggcgg
      421 tatatctggc aggctgcatc ctgcgccact ggaaagattt gcacaaactg tttcattatt
      481 tgaaaaaaca agggtttcca ttatgaaaat catcctgacc acttctatgt cgggcttggg
      541 cggcacggaa accgccaccg tccgcctcgg gcggctgctc aaacggcgcg ggcacgacat
      601 catccttgct tcttcggacg ggccttttgt cggagaggcg caagcatcgg gcatccgttg
      661 gcagccggtt gatttttacc ggggcgggct tgccggctac ctcaaaagca cctttgccta
      721 cgcccggatg ctgcgccgcg aacaacccga catcatcgac tgccaaatgg cgcgcgttgt
      781 tccagcctgc gcccttgccg ccaaaatcgt ttcgccgaaa accaaaatca tctaccactc
      841 gcacggtttg gacgcggcaa cctaccccaa aatcgccaag ctcttcgaca agctgggcgt
      901 gtacatcatc ggcaactgta aacacgagcg cgaaaaactc atccgccacg gcttccccgc
      961 cggccggatt gcctacgcct acaacgcact cccccccccc ggaatttcat ttccggaaaa
     1021 ccaaaaaaga atgcgccgta ctcggcacac tttcccgttt ggacaccgtc cgcgccgtgc
     1081 atctgatgtt ggatattttg aagaaaatgg ttgaccgcgg tatgcctgta cgcctcaacg
     1141 ttgcaggtat cggcgaagaa atggacaacc tcaaagccca agccaaacgt ttgggcattg
     1201 aagacaaagt caccttcctc ggcggcgtcc gcgatttgac cggctacttc aaagaagtcg
     1261 atattttggt gaacacgccg cattgcgtgg gcgatcacgg cgcaggtgtc ggcaacaata
     1321 ttttggaagc cggcctttac gacacgcctg tcgtgaccta caacatggcg ggcatttccg
     1381 aaatggtcat taccggccaa accggctact gcattccttt cggcgacgac gaagcattta
     1441 tcgaagccgt cgatacactc atcaagcatc cagagttgcg cagccaaatg ggcaaagccc
     1501 tgcacaaaca tgtcgaaacc ttatgctccg acgacgaaat ctaccgcacc accatggctg
     1561 cgtacgaaat gtaaggccgt ctgaaacatg aacattacca tcgtcgcccc ttattgctcg
     1621 ctgccgtccg agccgcattt caaccgcttc tggtatcttg ccgagctgtt gtcgcagtcg
     1681 catgacgtgt tgctgattac cagcaacttc aagcactacg acaaatcttt cagacggccc
     1741 gaagatgccg aggccgcctc acaaggccgt ctgaaagtca tgctgttgga agaaagcgga
     1801 tacagcaaaa acgtgtcttt aggacgcgtg accagccatc accgcttcgt caaacatttt
     1861 gaaaaatggt tggaaaactg ccgtccgggc gaacaagacg tcgtcttttc cgcctatccg
     1921 ctgattgcca ccaacctact gttgggcaaa cacaaagcgc gtttgggtta caaactgatt
     1981 gtcgatgtgc aggacgtatg gccggagtct ttctcctcgg tcgtaccgtt tttgaaaaaa
     2041 gtaccgcaca acctgctgcc ctttgcttca cgcgccaacc gggcctaccg ctacgccgac
     2101 gcgctggttg ccgtatcgca gacttatctc gaccgcgcca aagaaaccaa tccgaacgta
     2161 cctggcgaag tcatctatat tggtgctgac tttcccaaac tcgatgccgc acctgccaaa
     2221 gattttggcg acgacaaaac ccgctttttc tacttgggca cgctcagtta cagctatgac
     2281 gtggaaaccg tgtgcaaagg cgttcggaaa cttttggacg acggcgaaaa tgtagagctg
     2341 cacatcatgg gcggcggccc cgatttggac aggctcaaac aatatgcctg cgacggcatc
     2401 aagttttacg gctacattcc ttacgccgaa atgatgtcgg tctccaaggg ctgcgacatt
     2461 tccgtcaacg ccatccatag ccacgccatg cagtcggtta ccaacaaact ctctgactat
     2521 atggctttgc aaaaaccgat tctgaacagc caggttaacg acgaagttgc cgaagtcctt
     2581 accctgctgc cgcatgcgga ctaccgctcc ggcgatgtgg acggtttcgt tcaagccgat
     2641 aaagatattt tgaagcgcaa aaacgatcct gttcagtccg aagaaatcgt ccgccgcttc
     2701 aaacgcgacg ttgcctatca aaaaatcgtc aacctgattg aaagattagc tcatgaataa
     2761 atttttcaaa cgcctgtttg acattattgc ctccgcctca gggctaatta tcctgtcgcc
     2821 tgtgtttttg attttggtgt acctcatccg caaaaactta ggctcgcccg tgttcttcat
     2881 ccaagagcgg ccgggcaagg atggcaggcc gtttaaaatg attaaattcc gctccatgcg
     2941 cgatgcaatc gataaagacg gcaacccgct gccggacagc gaacgcctga ctgatttcgg
     3001 caaaaaatta cgcgccacca gtttggacga acttcctgaa ttatggaatg tcttaaaagg
     3061 cgagatgagc ctggtcggcc ctcgtccgct tttgatgggc tacctgccgc tttacaacga
     3121 atttcaaaac cgccgccacg aaatgaaacc gggcgtgacc ggttgggcgc aagtcaatgg
     3181 ccgcaacgcc atttcatggg atgaaaaatt cgcccacgat gtttggtaca tcgacaactt
     3241 cagcttttgg ctggatatca aaattttgtt cctgacggtt aaaaaagtct tcgtcaaaga
     3301 aggcatctca gccgaaggag aagccaccat gccttatttc acgggtaata aaactgatga
     3361 aaaaaaataa tatactgatt ctgtcggcag gtcgccgtgt cgaattggtg caggacttcc
     3421 aaaccgaagc cgcacgtttt tcagacggca tcagcgtttt tgccactgac ctcaaccccc
     3481 gcatgtcttc tgcctgccat gtttcggacg gttcatttga agtgccgccg attagtgccg
     3541 attcatatat cgacagcatt ttcaatctgg cggtacgcga aaatatcggt ttaatcatcc
     3601 caaccataga caccgaactg caaaagctgg cagacgagcg cgaacgcttt gaagcggcaa
     3661 gtgtccacat cgtcgtttcc gattcggact tcatcgcaca atgccgcgac aaacggaaaa
     3721 ccgccacctt gtttgcccgc tacggcatac gctcacccga aatttacgac cgcaagaagt
     3781 tggttttccc ttgcttcgcc aagccttatg acggcagccg cgccatcggt gcaaaacgga
     3841 ttgacacacc tgccgacctg acaccggaag tcttggcaga caccaaatta atgttctgtc
     3901 agtttatcga catcgaaaat aaattttccg agtttaccgt cgatatgtat tacgaccgtc
     3961 aatgccgtct gaaatgcgcc atcccgcgaa aacgcttgga agtgcgctcc ggcgaaatca
     4021 gcaaaggcgt tacctgcaaa aacagcctct accaaacgct gctggaaaaa atgtcggtat
     4081 tgcagggcgc gcgcggctgt atcacggcgc agttcttcta caacgaagaa accggcgaat
     4141 tctacggcgt ggaaatcaac ccccgcttcg gcggtggctt cccgctgacg tatgccgcag
     4201 gcggcaatta tccgagccgg ttgatgcgcg aatacctcgg cgacgaagaa atcccgtttt
     4261 cagacgactg ggaaaacaac ctcattatgt tgcgctacga tgccaaggtc ttggttcatg
     4321 aaaacgatta atcctgaaac caccgtcatc gtcttcgact tggacgatac cctgtattcg
     4381 gaatacgaat acaagctctc cggtatccgt tcggtcatcg ataccgttgc cgcactgtat
     4441 cccgattgga attcagacaa cctatggcgc aacatcgacc ccgacggcaa agattggctg
     4501 gacaaattgt gccgccactg tggttttaat gaatcggaaa aacaggttct tttgtggcaa
     4561 taccggctgc accgcccgac gctgactccg tatgctccgc cggatttcct gtccgaactg
     4621 accgcgccct tcgccgcacg cgcgctgatt accgacggca gaagcctgac ccaacgcctg
     4681 aagctggaag ccttgggtct gtcttccctg tttgacgaca tcctcatctc tgaagcctgc
     4741 tcttcggaaa agcccgacag caaacgcttc cgccatcttc aagacaaata tgccgacaag
     4801 gcaggctgct tcatctatat cggcgacaac atttccaaag actttatcgc gccgaacact
     4861 ttgggctgga taaccatagg attgcttccc tccggacaga acatccaccg ccaccagcct
     4921 gaaagtttta acacagaata tcatcccgac ttttgggtta actcctttca agatttagtt
     4981 cctataattg attcaaatac ttaaccatta cataatcaaa catgcactca caatattaaa
     5041 aggactattt catgacaaaa tattattcat ggggcgtaaa cggctttccg ccctacgttt
     5101 tcgacaccat ttggaaacga tggaagttga atgggcgcgg gggcggttat cgtgtgcgac
     5161 atcccggacg gcatgaccgt cgcgggcaat ccggcaaagc cgctgccgcg caaaaacccc
     5221 aagaccggga cggcataagc gattaaa
//
LOCUS       DAXIFD010000138         5092 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.138, whole genome shotgun sequence.
ACCESSION   DAXIFD010000138 DAXIFD010000000
VERSION     DAXIFD010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.138"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            340..5045
                     /gene="iga"
                     /locus_tag="ACFOCN_001673"
                     /pseudo
     CDS             340..5045
                     /gene="iga"
                     /locus_tag="ACFOCN_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244904.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IgA-specific serine endopeptidase
                     autotransporter"
BASE COUNT         1721 a         1184 c         1108 g         1079 t
ORIGIN      
        1 cgggaatcta ggacgcaggg ttaagaaaac ctacatcccg tcattccctc aaaaacagaa
       61 aaccaaaatc agaaacctaa aatcccgtca ttcccgcaaa agcgggaatc caaaaacaaa
      121 aagccgcaga aatttaacgg aagaaccgaa ccccgaaaat cggcttcccg ccttcgcttg
      181 aataacagaa caaaggaagc ggaaataaaa acatcgggat tcttttttta aattggcaat
      241 aaaacaccaa aattaatgat tcacacaaca aaaaatagtc aacaccgcca aaccggcgta
      301 aaatacaaaa cattatcacc cttaaaacgg taaaacctta tgaaaaccaa acgttttaaa
      361 attaacgcca tatccttatc catctttctt gcctatgccc ttacgccata ctcagaagcg
      421 gcattggtca gagacgatgt cgattatcaa atattccgtg actttgcaga aaacaaaggc
      481 aaattttttg tcggcgcaac cgatttatca gtgaaaaaca aacaaggtca aaacatcggc
      541 aacgcattat ccaacgtacc gatgattgat tttagcgttg cagatgtcaa cagacgtaca
      601 ttaaccgtca tcgatcccca gtatgccgtc agcgtcaaac atgtaaaagg agacgaaatc
      661 tcttattacg ggcatcacaa tggcacttag atgttagcaa tgatgaaaac gaatatcgtt
      721 cagttgcaca aaatgactac gaaccaaata aaaattggca tcacggtaat caaggtcgtc
      781 ttgaagacta caacatggca cgccttaata aattcgtaac agaagtcgca cctattgcac
      841 caaccagtgc aggcggcggc gttgaaacct ataaagataa aaaccgtttt tctgagtttg
      901 tgcgagttgg agcaggtacg caatttgaat ataacagccg ctacaatatg acagagcttt
      961 cacgagctta tcgttatgcc attgcaggta cgccttatca agacgtgaat gtcacatcga
     1021 atctaaatca agaaggcttg attggcttcg gtgataattc aaaacatcat tccccagaaa
     1081 aactcaaaga agttttatct caaaacgcat tgactaacta tgctgtgtta ggcgatagcg
     1141 gttcaccatt atttgcttat gataaacaag aaaaacgctg ggtcttttta ggtgcttacg
     1201 attattgggc aggctatcaa aaaaactctt ggcaagaatg gaatatctat aaaaaagaat
     1261 ttgcagataa aatcaaacaa cgcgataacg ccggcaccat caaaggtaat ggagaacatc
     1321 attggaacat tacttttggc acaaacagca agattggttc tacagcggta aggcttgccg
     1381 gcaatgaaaa ggatgcaaac aacggacaga atgttacctt tgaagacaac ggcactttgg
     1441 tattggatca aaacatcaac caaggcgcgg gcggtctgtt tttcaaaggc gattacacag
     1501 tcaaaggtat aaataatgac atcacttggc taggtgcggg gattgatgtt accgacggca
     1561 aaaaagtcgt ttggcaagtc aaaaatccga atggcgacag attggcaaaa atcggcaaag
     1621 gcacattaga aataaacggc acaggcgtta accaagggca attaaaagtc ggcgacggta
     1681 cggttattct gaatcaacaa gccgatgccg acaaaaaagt ccaggctttc tcccaagtcg
     1741 gcattgtcag cggacgcggt acattggtat taaatagttc aaatcagatt aatcccgata
     1801 acctatattt cggtttccgt ggcggtcgtt tggatgccaa tggcaatgac ttgacttttg
     1861 aacacatccg caacgtggat gaaggcgcgc gcattgtcaa ccacaacaca agccacgcct
     1921 ccacaatcac gctaacgggt aaatctttaa ttaccaatcc gaacagcctt tcggtacata
     1981 gcatacaaaa tgactatgac gaagatgatt atagttatta ctaccgacca aggcgcccga
     2041 ttccgcaagg caaagacctt tattacaaaa actatcgtta ttacgcccta aaatccggcg
     2101 gcagcgtgaa cgcaccgatg cccgagaacg gtgtaacaga aaataacgac tgggtcttta
     2161 tgggatatac gcaagaagaa gccaagaaaa acgcgatgaa ccacaaaaac aatcagcgta
     2221 ttagcggttt tagcggtttc tttggcgaag aaaacggaaa aggacataac ggtgcattaa
     2281 accttaattt caacggcaaa agcgcgcaaa accgtttctt gttaacaggc ggcactaatt
     2341 taaacggaaa aataagcgta actcaaggca atgtcttgtt atcaggtcgt ccaacaccac
     2401 acgcaagaga ttttgtgaac aaatcttcag cccgaaaaga cgcacatttc tccaaaaaca
     2461 atgaagtcgt atttgaagac gactggataa accgcacatt caaagccgca gaaattgcgg
     2521 ttaatcaatc cgcatcattc tcttccggta gaaatgtatc caacattacc gccaacatca
     2581 ccgcgacaga caacgccaaa gtaaatttgg gttacaaaaa cggcgatgag gtttgcgtgc
     2641 gctcggacta taccggttat gttacctgca acacaggcaa cttatccgat aaggctttaa
     2701 acagctttgg agcgacacag attaacggca atgtgaatct gaaccagaat gcggcattgg
     2761 tcttgggcaa ggctgcatta tgggggcaaa ttcaagggca aggaaacagc cgtgtcagcc
     2821 taaaccaaca tagcaaatgg catttgactg gcgacagcca agtacacaat ctgtcattgg
     2881 cggatagcca tattcatttg aacaatgcct ccgatgcgca aagtgcaaat caataccaca
     2941 cgctcaaaat caatcattta tccggtaacg ggcattttca ttatctgacg cacttggcgg
     3001 aaaatcttgg ggataaagtg cttgtgaagg aatccgcatc cggtcattat cagctccatg
     3061 ttcaagataa aacaggcgaa cccaatcagg aagggctgaa tctctttgat gcatcatccg
     3121 tacaagaccg ctcccgcctt tctgtttcct tggcgaataa ccatgtagat ttaggcgcat
     3181 tgcgttatac aatcaaaaca gaaaacggta ttacccgatt gtacaatcct tatgccgaga
     3241 accgccgccg agtcaaaccg gtcccgtctc ctgccacaaa cacggcttct caagcacaaa
     3301 cggacagtgc acaaattgcc aagcctcaaa atatcgtcgt cgcaccgcct agcccgcagg
     3361 caaatcaagc cgaagaagca aaacgccaac aagcaaaagc ggagcaagtg aagcgtcagc
     3421 aagcagaagc agagcgtaaa tcggcagagt tagcaaaaca aaaagcagaa gccgaacgcg
     3481 aagcaagaga gctggcgacc cgccaaaaag cagaacaaga acgcagcagc gccgaacttg
     3541 cacgtcgaca tgaaaaagaa cgcgaagcgg cagagttgtc ggcaaaacaa aaagtcgaag
     3601 ccgaacgtga ggctcaagca ttggcggtac gccgaaaagc agaagccgaa gaggcaaaac
     3661 gccaagctgc agagcttgca cgccaacaag aagaagcacg aaaagctgca gagttggctg
     3721 ctaagcaaaa agcggaaact gaacgcaaag cagcagaaat tgccgagcaa aaagcggaag
     3781 ccgaacgtga agccgccgaa cttgccaagc aaaaggcgga agaagaaggt cgccaagcag
     3841 cacaatctca acccaaacgt cgtaaccgca gggctatacc accggaactg tcatctgatg
     3901 caacaacccg agctttgcct aggatagcga gaaattcaaa tcctgatgcc agcgattatg
     3961 aagaaatccc cttggatgcg ttggaagatg aagatgtatc cgaatcggtt gacacatcag
     4021 acaaacagcc tcaagacaat acggaacttc atgaaaaagt tgagacagtg agtttgcaac
     4081 caagagccgc gcagccgcga gctcaagccg ccgcgcagcc gcaagcccaa gccgccgcgc
     4141 agccgcaagc ccaagccgtc gcgcaagccg atgcagtcag caccaatacc aactcggctt
     4201 tatctgacgc aatggcaagc acgcaatcta tcttgttgga tacaggtgct tcattaacac
     4261 ggcacattgc acaaaaatca cgtgctgatg ccgaaaaaaa cagcgtttgg atgtcgaaca
     4321 tcggttatgg ccgtgattat gcttccgcac aatatcgccg gtttagttcg aaacgcacgc
     4381 aaacacaaat cggcattgac cgcagcttgt ccgaaaatat gcagataggc ggcgtattga
     4441 cttactctga cagtcagcat acttttgatc aggcgagcgg caaaaatact tttgtgcaag
     4501 ccaaccttta tggtaagtat tatttaaatg atgcttggta tgtggccggc gatattggtg
     4561 caggcagctt gagaagccgg ttacaaacac agcaaaaagc aaactttaac cgaacaagta
     4621 tccaaaccgg ccttactttg ggcaatacgc tgaaaatcaa tcaattcgag attgtcccca
     4681 gtgcgggaat ccgttacagc cgcctgtcat ctgcagatta caagttgggt aacgacagtg
     4741 ttaaagtaag ttctatgtca gtgaaaacac tgacggccgg actggatttt gcttatcggt
     4801 ttaaagtcgg caaccttacc gtaaaaccct tgttatctgc agcttacttt gccaattatg
     4861 gcaaaggcgg cgtgaatgtg ggcggtaatt ccttcgccta taaagcagat aatcaacaga
     4921 aatattcagc aggtgccgcg ttactgtacc gtaatgttac attaaacgta aatggcagta
     4981 ttacaaaagg aaaacaattg gaaaaacaaa aatccggaca aattaaaata cagattcgtt
     5041 tctaaaatac taaattcata gcaaaataaa atgccgtctg aactcaggct tc
//
LOCUS       DAXIFD010000139         5089 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.139, whole genome shotgun sequence.
ACCESSION   DAXIFD010000139 DAXIFD010000000
VERSION     DAXIFD010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5089
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.139"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..241)
                     /locus_tag="ACFOCN_001674"
                     /pseudo
     CDS             complement(1..241)
                     /locus_tag="ACFOCN_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor"
     gene            complement(326..892)
                     /locus_tag="ACFOCN_001675"
     CDS             complement(326..892)
                     /locus_tag="ACFOCN_001675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970784.1"
                     /translation="MQNGGGKIYQTADNVEGIMLLKVVPERTVSADAKTRDPMWDNAA
                     LQTSEGVNFIARFLGFFSDGEYRYVDVLQPNHSDIIRYSGKDFPINQIFNHIHPARYA
                     VTFENNVDSKLRRHWVAGATIRIIDRQTDEVIAKKTIYVFEKGLDGTGGARMPWKFAI
                     LCNKERLTSSEPLSDFVLSVLKPYILRP"
     gene            complement(829..1182)
                     /locus_tag="ACFOCN_001676"
     CDS             complement(829..1182)
                     /locus_tag="ACFOCN_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970785.1"
                     /translation="MFTTNDLRHFLEGLAILFSIGYWGTMLLLLWFLVRFAYKKPKRN
                     PGKILSGSLTAAAILMLFVWIIPKQFGPIKEEIQAQEEWDRKYKEAEAVFNEQCKTAG
                     ERFTRRRTMWKGLCC"
     gene            1418..2845
                     /locus_tag="ACFOCN_001677"
     CDS             1418..2845
                     /locus_tag="ACFOCN_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HFC6970786.1"
                     /translation="MFFSALKSFLSRYITVWRNVWAVRDQLEPPKRTAEEQAFLPAHL
                     ELTDTPVSAAPKWAARFIMAFALLALLWSWFGKIDIVAAASGKTVSGGRSKTIQPLET
                     AVVKAVHVRDGQHVKQGETLAELEAVGTDSDVVQSEQALQAAQLSKLRYEAVLAALES
                     RTVPHIDMAQARSLGLSDADVQSAQVLAQHQYQAWAAQDAQLQSALRGHQAELQSAKA
                     QEQKLVSVGAIEQQKTADYRRLRADNFISEHAFLEQQSKSVSNWNDLESTRGQMRQIQ
                     AAIAQAEQSRVLNTQNLKRDTLDALRQANEQIDQYRGQTDKAKQRQQLMTIQSPADGT
                     VQELATYTVGGVVQAAQKMMVVAPDDDKMDVEVLVLNKDIGFVEQGQDAVVKIESFPY
                     TRYGYLTGKVKSVSHDAVSHEQLGLVYTAVVSLDKHTLNIDGKAVNLTAGMNVTAEIK
                     TGKRRVLDYLLSPLQTKLDESFRER"
     gene            2914..4317
                     /locus_tag="ACFOCN_001678"
     CDS             2914..4317
                     /locus_tag="ACFOCN_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HFC6970787.1"
                     /translation="MTLLNLMIMQDYGISVCLTLTPYLQHELFSAMKSYFSKYILPVS
                     LFTLPLSLSPSVSAFTLPEAWRAAQQHSADFQASHYQRDAVRARQQQAKAAFLPHVSA
                     NASYQRQPPSISSTRETQGWSVQVGQTLFDAAKFAQYRQSRFDTQAAEQRFDAAREEL
                     LLKVAESYFNVLLSRDTVAAHAAEKEAYAQQVRQAQALFNKGAATALDIHEAKAGYDN
                     ALAQEIAVLAEKQTYENQLNDYTDLDSKQIEAIDTANLLARYLPKLERYSLDEWQRIA
                     LSNNHEYRMQQLALQSSGQALRAAQNSRYPTVSAHVGYQNNLYTSSAQNNDYHYRGKG
                     MSVGVQLNLPLYTGGELSGKIHEAEAQYGAAEAQLTATERHIKLAVRQAYTESGAARY
                     QIMAQERVLESSRLKLKSTETGQQYGIRNRLEVIRARQEVAQAEQKLAQARYKFMLAY
                     LRLVKESGLGLETVFAE"
     gene            complement(4453..5089)
                     /locus_tag="ACFOCN_001679"
                     /pseudo
     CDS             complement(4453..5089)
                     /locus_tag="ACFOCN_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_153708080.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT         1282 a         1250 c         1320 g         1237 t
ORIGIN      
        1 atgaacgccg aatcagatac accgcgccga agaggaacgc ctaacaggtt tcctttaccg
       61 tccgttatgt acgtttcgta acattcgaag acttcctgaa ccctgcctgc cgtttcggtt
      121 tctgtccccc cctgttagat aaggggggaa gatttgaagc ggttgccggc ttcctgccgt
      181 ccgctggcgc gtccgtcatc acgccggcaa ccgcctttgt catcccttgc ttatcttcca
      241 tggtgcgaat cctcaaaaac gggcaaaaaa aagccctgtt acttgtagaa agtaaaggac
      301 gttaattttt gttaatcgtc ccttcttagg gacgcaatat ataaggtttt aaaacgctaa
      361 gaacaaaatc cgataacggc tctgaagaag taagtctttc tttattgcac aagatagcaa
      421 acttccacgg cattctcgcc ccacccgtgc cgtccaagcc tttttcaaag acatagatgg
      481 ttttcttggc aatcacttcg tcagtttggc ggtcgataat ccgtatggtc gcacctgcca
      541 cccagtgcct gcgcagcttg gaatcgacat tgttttcgaa cgttaccgca taacgggcgg
      601 ggtgtatatg attaaatatt tgatttatcg gaaaatcttt acctgaatac cgaataatat
      661 cggaatggtt gggttgcagg acatccacat agcggtattc cccatcgcta aaaaatccta
      721 ggaaacgagc aataaaattt acgccttcgc tggtctgtaa agccgcattg tcccacatcg
      781 ggtctctggt ttttgcatct gccgaaacgg tacgctcagg tactaccttc aacagcataa
      841 tcccttccac attgtccgcc gtctggtaaa tctttccccc gccgttttgc attgttcgtt
      901 aaacacggct tcggcttctt tgtattttct gtcccactct tcttgtgcct gtatttcttc
      961 tttgatcggg ccgaattgtt tgggaataat ccaaacaaac agcatcagga tagcggcggc
     1021 ggtcaggctg cctgaaagga ttttgccggg gttccgtttg ggctttttat aggcaaagcg
     1081 gacgagaaac caaagcaaca gcagcatggt gccccaatag ccgattgaga ataggatggc
     1141 caaaccttct aggaaatggc gtaaatcgtt tgtggtaaac atgggttgtt cctgtggtta
     1201 aatgtgcagg ctgctttttg ccgaaccttg ccgcatctca aaagcagcct gcgcttcagc
     1261 gttgcgttac gcagtaaaat aatgaatatt tgtaacgact tgggtatttt ttgtcaatat
     1321 tcccgccttt cccttaacag ctgccgcgct ttccgttaaa attcctttac atatttatat
     1381 tgtttcctgt ttctatattg ccaaggttat acccgttatg tttttctccg ccctgaaatc
     1441 ctttctttct cgatacatta ctgtatggcg caatgtttgg gcggtgcgcg accagttgga
     1501 accgcccaaa cgcacggcgg aagaacaggc gtttttgccc gcgcatttgg aactgaccga
     1561 tacgccggtc tctgccgctc cgaaatgggc ggcgcgtttt attatggcgt ttgcgctttt
     1621 ggctttgttg tggtcctggt tcggcaaaat cgatattgtg gcggcggctt cgggcaaaac
     1681 ggtgtcgggc gggcgcagca aaaccatcca gccgctggaa acggcggtgg ttaaggcggt
     1741 acatgtgcgc gacgggcagc atgtgaaaca gggagaaacg ctggcggaac tggaggctgt
     1801 gggaacagac agcgatgtgg tgcagtcgga gcaggctttg caggctgccc aattgtccaa
     1861 actgcgttat gaagcggtat tggcggcatt ggaaagccgt accgtgccgc atatcgatat
     1921 ggcgcaagca cggtctttag gtctctccga tgccgatgtg caatcggcgc aggtgttggc
     1981 gcagcaccag tatcaggcat gggcggcgca ggatgcgcaa ttgcagtcgg ctttgcgcgg
     2041 ccatcaggcg gaattgcagt cggccaaggc gcaggagcag aagctggttt cggtgggggc
     2101 gatcgagcag cagaaaacag cagactaccg ccgtttgcgg gccgacaatt ttatttcgga
     2161 acatgcgttt ttggagcagc agagcaaatc ggtcagcaat tggaacgatt tggaaagtac
     2221 gcgcggtcag atgaggcaga ttcaggcggc cattgcacag gcggagcaga gtcgggtgct
     2281 gaatacgcag aacctgaaac gcgatacgct ggatgcgctg cgccaggcaa acgaacagat
     2341 tgaccaatac cgcggccaaa cggataaggc aaagcagcgg cagcagctga tgacaataca
     2401 gtcgcctgcg gacggcacgg tgcaggaatt ggccacctat acggtgggcg gtgtggtgca
     2461 ggctgcccaa aaaatgatgg tggttgcgcc cgatgacgac aaaatggacg tggaagtttt
     2521 ggtattgaac aaagacatcg gttttgtgga acagggacag gatgcggtgg tgaagattga
     2581 gagttttccc tatacgcgct acggttatct gacgggcaag gtgaaaagtg tcagccatga
     2641 tgcggtaagc cacgaacagt tgggcttggt ttatacggcg gtggtgtcgc tggacaaaca
     2701 taccttgaat attgacggca aagcagtgaa tctgacggcg ggcatgaatg tcacggcgga
     2761 gattaaaacg ggtaaacggc gggtgctgga ttatctgtta agcccgctgc aaaccaaatt
     2821 ggacgaaagc tttagggagc gataggcgga tccgtactgg gcatttgtta tccgccggtt
     2881 cggacatgca gactgcctga aaccattgcc cggatgacat tgctcaatct aatgataatg
     2941 caagattacg gtatttccgt ttgcctgaca ctgacgccct atttgcaaca tgaactattt
     3001 tcggctatga aatcctattt ttccaaatat atcctacccg tttcactttt taccttgcca
     3061 ctatcccttt ccccatccgt ttcggctttt acgctgcctg aagcatggcg ggcggcgcag
     3121 caacattcgg ctgattttca agcgtcccat taccagcgtg atgcagtgcg cgcacggcaa
     3181 caacaagcca aggccgcatt ccttccccat gtatccgcca atgccagcta ccagcgccag
     3241 ccgccatcga tttcttccac ccgcgaaaca cagggatgga gcgtgcaggt gggacaaacc
     3301 ttatttgacg ctgccaaatt tgcacaatac cgccaaagca ggttcgatac gcaggctgca
     3361 gaacagcgtt tcgatgcggc acgcgaagaa ttgctgttga aagttgccga aagttatttc
     3421 aacgttttac tcagccgaga caccgttgcc gcccatgcgg cggaaaaaga ggcttatgcc
     3481 cagcaggtaa ggcaggcgca ggctttattc aataaaggtg ctgccaccgc gctggatatt
     3541 cacgaagcca aagccggtta cgacaatgcc ctggcccaag aaatcgccgt attggctgag
     3601 aaacaaacct atgaaaacca gttgaacgac tacaccgacc tggatagcaa acaaatcgag
     3661 gccatagata ccgccaacct gttggcacgc tatctgccca agctggaacg ttacagtctg
     3721 gatgaatggc agcgcattgc cttatccaac aatcatgaat accggatgca gcagcttgcc
     3781 ctgcaaagca gcggacaggc gcttcgggca gcacagaaca gccgctatcc caccgtttct
     3841 gcccatgtcg gctatcagaa taacctctac acttcatctg cgcagaataa tgactaccac
     3901 tatcggggca aagggatgag cgtcggcgta cagttgaatt tgccgcttta taccggcgga
     3961 gaattgtcgg gcaaaatcca tgaagccgaa gcgcaatacg gggccgccga agcacagctg
     4021 accgcaaccg agcggcacat caaactcgcc gtacgccagg cttataccga aagcggtgcg
     4081 gcgcgttacc aaatcatggc gcaagaacgg gttttggaaa gcagccgttt gaaactgaaa
     4141 tcgaccgaaa ccggccaaca atacggcatc cgcaaccggc tggaagtaat acgggcgcgg
     4201 caggaagtcg cccaagcaga acagaaactg gctcaagcac ggtataaatt catgctggct
     4261 tatttgcgct tggtgaaaga gagcgggtta gggttggaaa cggtatttgc ggaataaagc
     4321 aggctgaaac ggttatgaaa ttcccaaagc agcctgcacc ccgtttcgaa agtgcaggct
     4381 gctttgggat tgatccgata ctttcacatt ctcattgcct ttaaataaag cacagttaaa
     4441 aacacattta aattaagtgc gaattaattc aaatgtatat tcaattaaaa tcaaaatagg
     4501 acagtagtgc atcgtcaaat cgggcgtaat cagacaaaac ggttcgcaga tactgcttaa
     4561 tattcgccca cactttctca atcgggttga gctcaggtga ataaggtgca agaggcaata
     4621 ccttatgtcc caatttttcc gccatttccc gtaagacacc catacggtga aatcgcgcat
     4681 tatctaaaat aatcaccgat ttttgagtca atgcgggcag taggcattgc tgaaaccacg
     4741 cttcaaaaaa gactccggtc atcgtatttt gataaaccat cggagcaatc agccggttgc
     4801 cgacttgtgc ggacaccaaa gataagcgtt ggtatctttt tccacttatc tgcgctttca
     4861 ctatttgccc tttcaggctg cgggcatagg gacggaacag gtagcggtca aatcctgttt
     4921 catccaaata aacacgttgg tagtcggaaa attcggccgg ctgtgtcaaa taatgcgtta
     4981 ctttggccgg gtcttgttct ttgtaagtgg tggtcttttt ttgcgcgtta tccccatctg
     5041 tttgagtgca tagcaaacgg tggctgccgt acaatcaaaa tgtttggcg
//
LOCUS       DAXIFD010000140         4996 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.140, whole genome shotgun sequence.
ACCESSION   DAXIFD010000140 DAXIFD010000000
VERSION     DAXIFD010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4996
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.140"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(393..827)
                     /locus_tag="ACFOCN_001680"
     CDS             complement(393..827)
                     /locus_tag="ACFOCN_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HFC6970788.1"
                     /translation="MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSI
                     PLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQN
                     ENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ"
     gene            complement(830..1492)
                     /gene="exbB"
                     /locus_tag="ACFOCN_001681"
     CDS             complement(830..1492)
                     /gene="exbB"
                     /locus_tag="ACFOCN_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HFC6970789.1"
                     /translation="MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARK
                     GNAAVKRHMRDTLSLNDAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLN
                     EYLVIQIRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMS
                     IAAVAGPIGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQK
                     DS"
     gene            complement(1558..2400)
                     /locus_tag="ACFOCN_001682"
     CDS             complement(1558..2400)
                     /locus_tag="ACFOCN_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HFC6970790.1"
                     /translation="MDKERILTPAVVFSVALLHLAMVALLWQAHKLPVIESGNVIEFV
                     DLGDFGGGDGAPEGAGAPAAPEPQPEPEPPKPVEPPKPVLKPVVTKKADADIQQPKEE
                     PKPEEKPKPEEKPKPEPKPEAKPVPKPAEKPVEKPSEKPAEHPSNASAKADSEQGNGE
                     DKGTGTKGDGTGRGEGSGKGSGGVKGEHGEGAGSSKGNPLRANGSIPRPAYPTLSMEN
                     DEQGTVVLSVLVSPGGHVESVKIVKSSGFSRLDNAARKAAQNGHFQANAWTEFKVPVK
                     FELN"
     gene            2655..3293
                     /locus_tag="ACFOCN_001683"
     CDS             2655..3293
                     /locus_tag="ACFOCN_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HFC6970791.1"
                     /translation="MFQNFDLGVFLLAVLPVLLAITVREVARGYTARYWGDNTAEQYG
                     RLTLNPLPHIDLVGTIIVPLLTLMFTPFLFGWARPIPIDSRNFRNPRLAWRCVAASGP
                     LSNLAMAVLWGVVLVLTPYVGGAYQMPLAQMANYGILINAILFALNIIPILPWDGGIF
                     IDTFLSAKYSQAFRKIEPYGTWIILLLMLTGVLGAFIAPIVRLVIAFVQMFV"
     gene            complement(3745..4545)
                     /locus_tag="ACFOCN_001684"
     CDS             complement(3745..4545)
                     /locus_tag="ACFOCN_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HFC6970792.1"
                     /translation="MKKTIFNITKMDCPSEEQLIRMRLKDVSDIYELQFDIAGRCLTV
                     YHDNQDTTILQVLEPLNFDSHIISTEVIVDKIVFNKPDEHLEKRLLYQVLMINFVFFI
                     IECSVGIFANSMGLIADSLDMLADSFVYILALSAIGMTMAYKKRVAFLAGITQIILAL
                     FGVIEVIRRFIGAEQLPNYQLMIGTAFLALIANWLCLYLLSKNQNKEIHIKASMIFTS
                     NDIIINIGVIAAGALTLLTHSSYPDLIIGMIVFVIVLFGARNILKLAK"
     gene            complement(4681..>4996)
                     /locus_tag="ACFOCN_001685"
     CDS             complement(4681..>4996)
                     /locus_tag="ACFOCN_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970793.1"
                     /translation="NGFLLRSKVLSIVKNKQKFLSDMFPLEMPFFFVEYKIPILARFL
                     NRGMKWLYLPSFFCLVAICFSIYILNEEGGWMPYFACYWFGLCYPVSTYYVFLSRDYK
                     HI"
BASE COUNT         1289 a         1266 c         1069 g         1372 t
ORIGIN      
        1 tgggtatagc ggattaacaa aaaccagtac ggcgttgcct cgccttaact caaagagaac
       61 gattctctaa ggtgctgaag caccaagtga atcggttccg tactatttgt actgtctacg
      121 gcttcgttgc cttgtcctga tttttgttaa tccactataa aaattagaaa tgcacatttt
      181 cattattctc gcgcaggcag gactccagac ttacccattt cagtaatgtt tgaaaataaa
      241 agaaaaatca gatgtttgta ttcccgcctg cgcagaaatg gagacggtgc tctgtcgtct
      301 catttttgtt ttaatcaact atatatagct gattaaacat aagaaatgcc gtctgaaaga
      361 ctttcagacg gcattcgttc aagcgtcgaa ctttattgcg ccttggtttc ggttacaaaa
      421 ccgattttgg tgattcctgc ctgacgggcg gcttctaaag ctttgtttac ataatcgtat
      481 tccaccgcct tgtctgccgc aatcgccaca atcacgtttt cattctgctc cttggcggct
      541 ttcagacggc tttccacttc cccgatttcc actttgcttg cagaatcccc gccgacataa
      601 tagccgccgt tcgcatcaat cgtcaggcgc agggggtctt taggctgttt gtcctgcttg
      661 tttgtctgct cggacgcggt cggcagttcc aaagggatgg aatgcgtcag caccggcata
      721 gtaatcataa acacaatcag caacaccagc atcacgtcca ccaacggcgt aacgttgatg
      781 tcggacatcg gagaatcgtc gccggaattc atcgaaccaa atgccataat cagctatcct
      841 tttgattaag caggcggacg tgcaaatcgt gcgccatcgc atccaaatcc tgggtcagta
      901 tttttgtgcc gcgattgagg aagttgtatg ccaacaccgc cggaatcgcc acgaacaaac
      961 ccgccgccgt cgccaccagt gcctcgccaa tcgggccggc aaccgccgca atactcatct
     1021 gcccgctttg cccgatattg atcagggcgt ggtaaatccc ccaaaccgtg ccgaacagcc
     1081 cgataaacgg cgcggtcgcg ccgatggagg caagcgcggt catcccgtaa tcaaaccggc
     1141 gcataatctg cgccatactg ttgcggattt gaatgaccaa atactcgttc aacggcaaag
     1201 cctgcgccag ttcggacgct tcgtttcggc ggtagttgcg gtaagactgc aatgcctctt
     1261 gcgccagttt ggacaaaggc gcatcgacgg cgcgcacttt ttcgaccgcg tcgttcagcg
     1321 acaaagtatc gcgcatatgc cgtttgacgg cggcattccc tttgcgcgcc cgatacagct
     1381 tgatgcagcg caagacaacc aaacaccacg ttacgatact catcaacagc atcaacacaa
     1441 acacaccgat caggacggga tcgcccgatt caaatactaa tttcaaattc ataatgattc
     1501 caacactgaa aaaaccaatc aaacatccaa gctgccgcaa accgctgcgg caaccgccta
     1561 attcaattca aacttgacgg ggactttaaa ctccgtccag gcattggctt gaaaatgccc
     1621 gttttgcgcc gccttgcgtg ccgcattgtc caaccgagaa aaaccactgc ttttcacgat
     1681 tttaacggac tcgacatgac cgcccggaga aaccaaaacg ctcaaaacaa ccgtaccctg
     1741 ctcgtcattc tccatagaaa gcgtgggata agccgggcgc ggaatgctgc cgttggcgcg
     1801 taaaggattg cctttgctgc tgccggctcc ttccccgtgt tcgcctttga caccgccgct
     1861 acctttaccg ctgccttctc cgcgccccgt tccgtctcct ttggtaccgg ttcccttatc
     1921 ttccccatta ccctgctcgc tgtctgcttt ggcagaagca ttgctgggat gttcggcagg
     1981 tttttcagac ggcttctcga ccggtttttc cgccggtttc gggacaggct tcgcttccgg
     2041 cttaggctct ggtttcggtt tttcttcggg tttcggcttt tcttcaggtt tcggctcttc
     2101 cttaggctgc tgaatatccg catccgcctt tttcgtaacc accggcttca aaaccggctt
     2161 gggcggctcg acaggtttgg gcggctcagg ctcaggttgc ggctcaggcg cagcaggcgc
     2221 acctgcgcct tcgggtgcac cgtcccctcc gccaaaatca cccaaatcga caaattcaat
     2281 aacattgcct gactctatca cgggcagctt gtgcgcctgc caaagcaatg ccaccattgc
     2341 caaatgcagc agtgcgacgg aaaacacgac tgcgggggtt aaaattcgtt ctttatccat
     2401 aattcgggca taataatagc aacaattcct atttgcaacc tatttttaca atttttggtc
     2461 atatgaatgt ctgttccgtt cacaggcaaa ccgtgtttaa acgctgtatt acagcaaatc
     2521 atcagataac gggccggcag aaaaaatgat tccgtctgat ttcttattcc aataaaatca
     2581 ggttagatga tatattgccg cttctgtctg tcagccgttt cgggctgcac accacatctg
     2641 ttcaaaggaa aaccatgttt caaaattttg atttgggcgt gtttctgctt gccgtcctgc
     2701 ccgtgctgct cgccattacc gtcagggagg tggcgcgcgg ctatacggcg cgctactggg
     2761 gagacaacac tgccgaacaa tacggcaggc tgacactgaa ccccctgccc catatcgatt
     2821 tggtcggcac aatcatcgta ccgctgctta ctttgatgtt cacgcccttc ctgttcggct
     2881 gggcgcgtcc gattcctatc gattcgcgca acttccgcaa cccgcgcctt gcctggcgtt
     2941 gcgttgccgc gtccggcccg ctgtcgaatc tggcgatggc tgttctgtgg ggcgtggttt
     3001 tggtgctgac tccgtatgtc ggcggggcgt atcagatgcc gttggctcaa atggcaaact
     3061 acggtattct gatcaatgcg attctgttcg cgctcaacat catccccatc ctgccttggg
     3121 acggcggcat tttcatcgac accttcctgt cggcgaaata ttcgcaagcg ttccgcaaaa
     3181 tcgaacctta tgggacgtgg attatcctgc tgcttatgct gaccggggtt ttgggtgcgt
     3241 ttattgcacc gattgtgcgg ctggtgattg cgtttgtgca gatgttcgtc tgactggctt
     3301 tcagacggca taaacgctcc agaaaacgcg gcaggacata ttgccctgcc gcgttttcct
     3361 gtagtgtaat cttatttttt tcatcattat tagaaccaag ttgcatgata atacctttca
     3421 ttaactgaaa cactgattaa gaaactccag tctgtctaat gatgaggttt tcacatcgcc
     3481 aaaacttgcc aatcaaatgc tggatttatt gccgtctgag atttggtcaa atccaaaggc
     3541 gacattctta gaccctgtgt gtaaatcagg ggtatttttg cgtgaaatcg tcaaacgctt
     3601 ggatgaaggc ttgaccaatc aaataccaga taaacaaact cgcattaacc acattttaaa
     3661 aaatcaagtt tttggaagta ctgccacgta tgtaggtagc tttgaccgat atttgcataa
     3721 aaactccttt gctggtgaaa ggaattattt tgccaatttt aaaatatttc tggcaccaaa
     3781 tagtacaatg acaaagacaa tcatgccaat gattaaatca ggatagctag aatgagtcaa
     3841 taacgtcaat gctcccgccg ctatcacacc gatattgatg ataatgtcat tggatgtaaa
     3901 aatcatgctg gctttgatat ggatttcttt attttgattt ttgctcagta gatataagca
     3961 cagccagttt gcaatcaatg ccaaaaatgc cgtgccaatc atcagttgat aattgggcag
     4021 ctgctcagca ccgataaaac gcctaatcac ttctatcacc ccaaataacg ccaatattat
     4081 ctgcgttatc cccgccaaaa atgccacacg ttttttatac gccatcgtca taccaatggc
     4141 tgatagcgcc aatatataga caaagctgtc cgccagcata tctagactat cagcaatcag
     4201 ccccatagaa ttagcaaaaa taccaaccga acactctatg ataaaaaaca caaagttaat
     4261 catgagcact tgatataata atcttttttc taagtgctca tcaggcttgt taaacactat
     4321 cttatcaaca atcacttcgg tggaaatgat atgactatca aaattaagcg gttcaagtac
     4381 ttgtaaaatc gttgtatctt gattatcgtg atagacggtt aagcaccgcc cagcaatatc
     4441 aaactgtaat tcataaatat cagacacatc ttttaaacgc atgcgaatga gctgttcttc
     4501 ggacgggcag tccattttgg taatgttaaa aatggtcttt ttcatctatt tagttccttg
     4561 ttttgatcag gttggctcaa ataaatctgt gtttatattg ctgcttggta atttttggat
     4621 ggtttgagta aattgattag gttaaaattt acctttggaa gtaccgccac gcataatagt
     4681 ttagatatgt ttataatctc tggataaaaa aacgtaataa gtgcttactg gataacaaag
     4741 tccaaaccaa tagcaggcaa aataaggcat ccacccccct tcttcattaa ggatatatat
     4801 tgagaaacaa atcgcaacta aacagaaaaa acttgggaga taaagccatt tcattcccct
     4861 attcaagaat ctagccaaga taggtatttt gtattctaca aaaaagaaag gcatttccaa
     4921 gggaaacatg tcagataaaa acttttgttt attttttact atagatagaa ccttgcttct
     4981 caagagaaag ccatta
//
LOCUS       DAXIFD010000141         4903 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.141, whole genome shotgun sequence.
ACCESSION   DAXIFD010000141 DAXIFD010000000
VERSION     DAXIFD010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4903
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.141"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..533
                     /gene="mafB"
                     /locus_tag="ACFOCN_001686"
     CDS             <1..533
                     /gene="mafB"
                     /locus_tag="ACFOCN_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6970794.1"
                     /translation="DQWMQENPNAAETVEALVNVLPFAKVKNLTKAAKPGKAAVSGDF
                     SDSYKHNTASRLSQSVDGEMFQTRNVDFKAKSIGTKIHDGAQGKHISGHRNYIEGKST
                     LNQNINPQELLNGIHSGAYPVISKGARGNPVVDFGYPIGSDGKSGLSTNFGTIHSGKN
                     GVHIVPANPKTIKKVQ"
     gene            536..853
                     /locus_tag="ACFOCN_001687"
     CDS             536..853
                     /locus_tag="ACFOCN_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970795.1"
                     /translation="MNILPSWLRVGMNIAMLGMIHSDIRLITVDYEERRRFLKIKNYL
                     SREAITEDHEDMEYLITELWSMCGEYFDEADFECIYSNHSSMELNQINGAVFRRKELI
                     SQA"
     gene            954..1694
                     /locus_tag="ACFOCN_001688"
                     /pseudo
     CDS             954..1694
                     /locus_tag="ACFOCN_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798991.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HINT domain-containing protein"
     gene            1697..2020
                     /locus_tag="ACFOCN_001689"
     CDS             1697..2020
                     /locus_tag="ACFOCN_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HFC6970796.1"
                     /translation="MIVDEKSTSDVLKQYQELGFDLTKSMIIEFFIEGSQKNLQSIES
                     QIISYRQDFQISIEQNEFGEMWTCYCSVNIIPSLENILAIETTLFDIAQKNDCNYEGF
                     GSYGN"
     gene            2253..2525
                     /locus_tag="ACFOCN_001690"
     CDS             2253..2525
                     /locus_tag="ACFOCN_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970797.1"
                     /translation="MMSVKELFKVILDENKDFPIRTIHRTPMGILPKPVALSIVQYEN
                     DPGFYLFYLDETGQEQTDTYHDTLDSAFEQAEFEFGISKEEWMQSP"
     gene            2507..2659
                     /locus_tag="ACFOCN_001691"
     CDS             2507..2659
                     /locus_tag="ACFOCN_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970798.1"
                     /translation="MDAKSLDGKIKMPLYFSDGISVNKKVGIGAQNSLRLAGIGMKSL
                     RKNDYS"
     gene            2646..3191
                     /locus_tag="ACFOCN_001692"
     CDS             2646..3191
                     /locus_tag="ACFOCN_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004463655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HFC6970799.1"
                     /translation="MIIVEHLEHYLGEIESGIKCLDRRYHLSVSVFPSQPYKGVTTFS
                     TLGLNRYDLNYKSRFELIFTCSEEWNKENIAAFLSGVAEYLIDNRQPILRGEIIQLPR
                     VIIEGSKMDALYVSAPFYFDDDFQVCYGEHYNIVFPLLVPLYKQEAELVEKKGWNAFE
                     QFLLDNEVGNLSDMNRKPFTW"
     gene            3327..4034
                     /locus_tag="ACFOCN_001693"
     CDS             3327..4034
                     /locus_tag="ACFOCN_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
                     /protein_id="HFC6970800.1"
                     /translation="MVKTADGYKAIARIRTGDRVFAKDEASGKTGYKPVTARYGNPYQ
                     ETVYIEISDGIGNNQTLISNKIHPFYSQGKWIQAGRLKKGDTLLSESGAKQTVQNITF
                     KQQPLKAYNLTVADWHTYFVKGSQAETEGVWVHNDCPYDKGNQRYKDASYHGKNDNSV
                     KSRAPTNGQAALDNSVQVKSTSPRRVGVDKANNEIVVLDKTQTFNNGFAEYHGHVRSW
                     QDLHTDQKNALKKAGLD"
     gene            4060..4389
                     /locus_tag="ACFOCN_001694"
     CDS             4060..4389
                     /locus_tag="ACFOCN_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970801.1"
                     /translation="MTDKSKTEKLISSDDKQSVIDGILDMVFNSKAYEVPWISEKLME
                     LSKNKDLDIAGLSLTCFGHLARLHSNIGDYDKVISLLHSKQDDPELQGRAEDALEDIS
                     LFLSENH"
BASE COUNT         1644 a          926 c         1033 g         1300 t
ORIGIN      
        1 ttgaccagtg gatgcaggaa aaccccaatg ccgccgaaac cgtcgaagcc ctggtcaacg
       61 tcctgccgtt tgccaaagtc aaaaacctga caaaggcggc aaaaccgggg aaggctgcgg
      121 ttagtgggga tttctcagac tcctacaagc ataacactgc ttcaagatta tctcagtctg
      181 tagatggaga aatgtttcaa acccgcaatg ttgattttaa agcaaaatct attgggacta
      241 aaattcatga tggagctcaa gggaaacata tttcaggaca tagaaactac attgaaggta
      301 agagtacttt aaatcaaaac attaatcctc aagaattgtt gaacggaata cattcaggtg
      361 cttatccagt tatttctaaa ggagcaagag gaaatcctgt tgttgatttt gggtatccta
      421 taggcagcga tgggaaatca ggattaagta ccaattttgg tacgattcat tcaggtaaaa
      481 atggagttca cattgttccg gctaacccta aaaccattaa aaaggtgcaa tagttatgaa
      541 tatattacca agctggctgc gagtcggtat gaatatagca atgctgggca tgatacactc
      601 agatatcagg ttaattaccg tagattacga ggaaagaaga aggtttttaa aaatcaaaaa
      661 ttatttatca agagaagcca tcacagaaga ccatgaagat atggaatatt tgattacaga
      721 gttatggtct atgtgtggag aatattttga tgaagctgac tttgaatgta tttattctaa
      781 tcattcttct atggagttaa accaaataaa tggtgcagta ttcaggagaa aggaattaat
      841 ttcgcaagcg taggttaaaa aaccaacaat cacaatgtct tctgaaaccg tgtttaattt
      901 tcagacggca tttccttcat ttgaaatagg atattgagaa ctgagttctt caaaaatcct
      961 acacctgctc cttccacggc agcaccttgg tcaaaacggc agacggctac aaagccattg
     1021 cccatattca agccggcgac cgcgtcttcg ccaaggacga ggcaagcgga aaaacgggat
     1081 acaaacccgt taccgcccga tacggcaatc cgtatcggga aaccgtttac attgaaattt
     1141 cagacggcat cggcaacaac caaaccctga tttccaataa aatccacccg ttttacagtc
     1201 aaggaaaatg gatacaggca ggtcgtctga aaaaaggcga caccctgctt tccgaaagcg
     1261 gtgcaaaaca gacggttcaa aacattaccc tcaaacagca gccgctcaaa gcctacaacc
     1321 tgaccgttgc cgactggcat acttacttcg tcaagggtga taaggcggaa acggaagggg
     1381 tttgggttca taatgagtgt ccgtatggag aaaaatatag gacagaagtt ggttcttata
     1441 ctaatactca tgaaagtggt cgaacttatt ctggaaaggg cacaagacaa cgttcccaaa
     1501 tctctggagc aagagaagct agggttaata atgaccctca tatagctaca gattttactc
     1561 ctgccaaaaa taatcgagag gcattcaaag atgaatctag aagaattgac gctcacggtg
     1621 gttccaaaag taccaataat tacaatcgaa ttgaaagccc ggggaaaaaa tatcgaaaac
     1681 aagatggaga ttaaaaatga ttgttgacga aaaatctact tcagatgtac tgaaacaata
     1741 tcaagaacta gggtttgatt tgacaaaatc gatgataata gagtttttta tagagggttc
     1801 tcaaaagaat ctgcaatcaa tagaaagtca aatcatttct tatcggcaag attttcaaat
     1861 cagtattgag caaaatgaat tcggagaaat gtggacttgc tattgttccg tcaatattat
     1921 cccttctctt gaaaacattt tagctattga aactacgtta tttgatattg cacaaaaaaa
     1981 tgattgtaat tatgaaggtt ttggttcgta tgggaactaa caagaagtgt aggttgggtt
     2041 gaaaaacaca acaatcaaaa ggtcgtctga aaccatgttt aattttcaga tggcttttcc
     2101 ttcatttaaa acaggatatt gagatctaag ttctttaaaa atcctacacc tgctccttcc
     2161 acggcagcac cttggtcaaa acggcagacg gctacaaagc caatggacgt gtaatagaaa
     2221 atagtgcggt aacaattatt cgggattgaa gaatgatgag tgtaaaagaa ttattcaaag
     2281 tcatcttaga tgaaaataaa gattttccta ttagaacgat tcatcgtacc ccgatgggga
     2341 tacttcccaa acctgttgct ttaagtattg ttcaatatga aaatgacccg ggattttatt
     2401 tgttttattt ggatgagacc ggtcaggaac aaacggatac ttatcatgac acattagatt
     2461 cggcatttga acaggctgaa tttgaatttg gaatcagcaa agaggaatgg atgcaaagtc
     2521 cttagacggc aaaatcaaga tgccgcttta tttttcagac ggcatttccg tcaataaaaa
     2581 agtcggtatt ggagcccaaa acagcctacg tcttgccggg atagggatga aatctttaag
     2641 aaaaaatgat tatagttgaa catttagaac attatttggg tgaaatcgaa agcggtataa
     2701 aatgcttgga tcgacgttat catctcagcg tttccgtctt cccatcacaa ccatataaag
     2761 gggtaactac tttttctact ttaggcttga atcgatatga cttgaactat aagagtaggt
     2821 ttgaattaat ttttacctgt tctgaagaat ggaataaaga aaatattgca gcttttctat
     2881 caggagtggc tgaatatttg attgacaata gacaacctat tttaagaggt gaaattattc
     2941 aattacccag ggtaattatc gaaggtagca aaatggatgc actgtatgtt tccgccccat
     3001 tttatttcga cgatgatttt caggtctgtt atggcgaaca ctacaatatc gttttccctt
     3061 tgcttgtccc gttgtataaa caggaagcag aattggtgga aaaaaagggt tggaatgctt
     3121 ttgagcagtt cttgctggat aatgaagttg gcaacctttc ggatatgaat cggaaaccgt
     3181 ttacttggta aggattttct taaatttaat caaagtgccg tctgaaaccg tgtttaattt
     3241 tcaggcgacc ttccccttat tttaaacagg atattgggaa ctaagttctt caaaaatcct
     3301 acacctgctc cttccacggc agcaccttgg tcaaaacggc agacggctac aaagccattg
     3361 cccgtatccg aaccggcgac cgcgtcttcg ccaaggacga ggcaagcgga aaaacgggat
     3421 acaaacccgt taccgcccga tacggcaatc cgtatcaaga aaccgtttac attgaaattt
     3481 cagacggcat cggcaacaac caaaccctga tttccaataa aatccacccg ttttacagtc
     3541 aaggaaaatg gatacaggca ggtcgtctga aaaaaggcga caccctgctt tccgaaagcg
     3601 gcgcaaaaca gacggttcaa aacattacct tcaaacagca gccgctcaaa gcctacaatc
     3661 tgaccgtcgc cgattggcat acctacttcg tcaagggcag tcaggcggaa acggaagggg
     3721 tttgggttca taatgattgt ccgtatgata aaggcaacca acgatataaa gacgcttctt
     3781 atcatggcaa aaatgataat tctgtgaaaa gtagagcacc aacaaacgga caagcagctc
     3841 ttgataattc cgttcaagtt aaatcaactt ctcctcgaag agttggggtt gataaagcca
     3901 ataatgaaat cgttgtatta gacaaaactc aaacttttaa taacggtttt gcggaatatc
     3961 acgggcatgt cagaagttgg caagatttgc ataccgatca gaaaaatgct ttaaaaaaag
     4021 caggattgga ttagttaatt caaaaggaaa aattaaaaaa tgactgataa aagtaaaaca
     4081 gaaaagttga tttcttctga tgataaacaa agtgttatag atggcattct tgatatggta
     4141 tttaattcca aagcatatga agtaccgtgg atttctgaga aattgatgga attatcgaaa
     4201 aataaagact tggatattgc cggattatcg ctaacctgtt tcggacatct cgccaggcta
     4261 cattcaaata tcggtgatta cgataaagtt atttctttac tacattcaaa gcaagatgat
     4321 ccagagcttc aaggtagggc tgaagatgcg ttagaagata tttctttatt tttatctgaa
     4381 aatcattagg aaccgtaggt cgggttgaaa acccaacaat caaaatgccg tctgaaaccg
     4441 tgtttaattt tcagacggca tttccttcgt ttgaaatagg atattgagaa ctgagttctt
     4501 caaaaatcct acacttgctc cttccacggc agcaccttgg tcaaaacggc agacggctga
     4561 aaagcaaaca ccgtccgtcg tgttgccgtt tgcggatgag tacgggtcaa ccccaatgcc
     4621 gccgaaaccg tcgaagccgc cttcaacatt gccgccgcca aagccgcaaa gttggcaaaa
     4681 acggtaaaac cggggagata aaagccgatg gcaggaaagt aaatgtgagg atagacagta
     4741 cggaggcaga cctgctttat ctggcagggc aataagaaaa caaaaattag atatggaaaa
     4801 cgattgtgaa gattaaacca ttacaatttt ctaacaatag tcgcagattt tacgtagaca
     4861 aaatttgtgt taccgaacaa gatgtgaaca ttttggcatc cga
//
LOCUS       DAXIFD010000142         4838 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.142, whole genome shotgun sequence.
ACCESSION   DAXIFD010000142 DAXIFD010000000
VERSION     DAXIFD010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4838
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.142"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            97..903
                     /locus_tag="ACFOCN_001695"
     CDS             97..903
                     /locus_tag="ACFOCN_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HFC6970802.1"
                     /translation="MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGE
                     FPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQ
                     PTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEI
                     VPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDST
                     DDKGEVDIIPLRQGFWKANVEHKADFPDQSVCQKQANYSTLTFQIGHSHH"
     gene            complement(961..2226)
                     /locus_tag="ACFOCN_001696"
     CDS             complement(961..2226)
                     /locus_tag="ACFOCN_001696"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HFC6970803.1"
                     /translation="MSEALAKETLNPFEIARKQVKTACDRLKTDPAVYEILKSPTRVL
                     EVNFPVKLDDGTVKTFTGYRSQHNNAVGPYKGGVRFHPGVNLDEVKALSIWMTIKCCV
                     AGIPYGGGKGGVTLNPRDYSEAELERIARAYSEAISPLIGEKIDIPAPDVNTNGKIMS
                     WMVDAYENVVKHSAPGVFTGKPVEFGGSLARTEATGYGVNLAAVQALEKLGKDVKGAT
                     YAIQGFGNVGYHTGYYAHQSGAKVVAVSTVDVAIYNENGLDMEAIIKEFQTKGFITNE
                     AGYGKEITNAELLALEVDVLAPCALENQLTSENAGKVRATIVVEGANGPTTPEADVIL
                     RQNGVLVVPDILANCGGVVVSYFEWVQNLQGYYWEFDEVQEKETVVLRRAFRDIWNLA
                     QEYDVDLRTASYMMSIRRVEKAMKLRGWY"
     gene            2633..3343
                     /locus_tag="ACFOCN_001697"
     CDS             2633..3343
                     /locus_tag="ACFOCN_001697"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HFC6970804.1"
                     /translation="MNAAIEHVQAVAFDLDGTLCDSVPDLAAAAEAMLEQLGMKPLPA
                     KVVESYVGDGIGKLVHRVLTNDRDREADSELWEKGFVSYMKYYRDHLSVFTRPYPKTE
                     AGLALLKSLGIPLAVVTNKNEILAVELLKQLGLADYFSLILGGDSLPEKKPSPLPLRH
                     AAEVLGIDVANMVMVGDSRNDIIAAKAAGCLSVGVTFGYGDMTLLSQDDATRPDWIIG
                     SLPEIYENLQPQKNKDEE"
     gene            3416..3877
                     /gene="recX"
                     /locus_tag="ACFOCN_001698"
     CDS             3416..3877
                     /gene="recX"
                     /locus_tag="ACFOCN_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HFC6970805.1"
                     /translation="MKPQKSLRARAMDILSRQEVSRIGLKRKLAPHAESEEELENVLN
                     EFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQQGIDEETSRNLLPDRSSEKQAA
                     IDVLRKKFKHPAADLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDGC"
     gene            3951..4112
                     /locus_tag="ACFOCN_001699"
     CDS             3951..4112
                     /locus_tag="ACFOCN_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970806.1"
                     /translation="MSEQPEKNHNPLLEDERKNPVYRMGQAVAGFMLVVWVAVLALVF
                     FLVFRFWLS"
     gene            4265..4747
                     /locus_tag="ACFOCN_001700"
     CDS             4265..4747
                     /locus_tag="ACFOCN_001700"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6970807.1"
                     /translation="MTQQRQLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQVAYS
                     CASRYSGNYCVTLSVDKVLFKEPIHIGDLVTFYAAVNYTGRTSMEIGIRVEAQNIRTG
                     EIRHTNSCYFTMVAVKDGKPVPVPPLEILTDRQRCRYEKAKKRRDISLQASEDMSCGC
                     "
BASE COUNT         1273 a         1417 c         1101 g         1047 t
ORIGIN      
        1 aaagacagtt ttcagacagc aaatccgtct tcacacgata cctattttgt tataacataa
       61 caaaatcttt gacccacacg agacaaaggc tgcaccatga agaaaacatt gacactgctc
      121 gccgtttccg ccctatttgc cacatccgcc cacgcccacc gcgtctgggt cgaaaccgcc
      181 cacacgcacg gcggcgaata ccttaaagcc gacttgggct acggcgaatt tcccgaactc
      241 gaacccatcg ccaaagaccg cctgcacatc ttcagcaaac cgatgcagct ggttaccgaa
      301 aaaggcaagg aaaacatgat tcaacgcggc acatacaact accagtaccg aagcaaccgt
      361 cccgttaagg acggcagtta cctcgtcatc gccgaatatc agcctacttt ctggtcaaaa
      421 aacaaagcag gctggaaaca ggcgggcatc aaagaaatgc ctgacgcaag ctattgcgaa
      481 caaacccgaa tgttcggcaa aaacatcgtc aacgtcggac acgaaagcgc ggacaccgcc
      541 atcatcacca aaccggtcgg acaaaacttg gaaatcgtcc cgctggacaa tcccgccaac
      601 attcacgtag gcgaacgctt caaagtccgc gttctgttcc gtggcgaacc gctgcccaat
      661 gccaccgtta ccgccacctt tgacggcttc gacaccagcg accgcagcaa aacgcacaaa
      721 accgaagcac aggctttctc cgacagcaca gacgacaaag gcgaagtgga catcatcccc
      781 ttgcgccaag gcttctggaa agccaatgtc gaacacaaag ccgacttccc cgatcaaagc
      841 gtgtgccaaa aacaggcgaa ctactcgact ttaaccttcc aaatcggcca ttcgcaccat
      901 taatcccgcc cgcacaaaaa tgccgtctga aggcttcaga cggcattttt tgttcaaaca
      961 tcaataccaa ccgcgcagtt tcatcgcttt ttcaacacgg cggatactca tcatgtaaga
     1021 cgcggttcgc aaatcgacat catactcttg cgccaagttc catatatcgc ggaacgcacg
     1081 gcgcaggacg acggtttctt tttcctgaac ttcgtcaaac tcccaataat agccttgcag
     1141 attttgtacc cattcaaaat aagataccac cacgccgccg cagttcgcca aaatatcggg
     1201 cacgaccaat acgccgtttt gacgcaggat aacgtcggct tcgggcgtag tcgggccgtt
     1261 cgcgccttcg accacgattg tcgcgcggac tttaccggca ttttcagaag tcagttggtt
     1321 ttccagtgcg caaggggcaa gtacgtccac ttccagagcc aaaagttcgg cgttggtaat
     1381 ttccttgccg tagccggctt cattggtgat gaaacctttg gtttggaatt ctttgatgat
     1441 tgcttccata tccaagccgt tttcgttgta aatggcaacg tcaacagtag aaaccgcaac
     1501 aactttcgcg ccggattgat gcgcgtaata acctgtgtgg taaccgacat taccgaagcc
     1561 ttggatggcg taagtggcac ccttcacgtc tttgcccagt ttttccaagg cttggacggc
     1621 ggcgaggttc acgccgtaac cggtagcctc ggtacgcgcc aaagagccgc cgaactcaac
     1681 cggtttaccg gtaaatacgc ccggtgcaga atgtttcacc acgttttcat aggcatcaac
     1741 catccaagac atgattttgc cgttggtgtt cacatcaggt gcgggaatat cgattttctc
     1801 gccgatcagc ggagaaatgg cttcggaata agcgcgggcg atgcgttcca gttccgcctc
     1861 ggaataatcg cgcggattca aggtaacgcc gcctttgccg ccgccgtaag gaatacccgc
     1921 aacgcagcat ttgatggtca tccaaatcga cagggctttg acttcgtcca gattcactcc
     1981 gggatggaag cgcacgccgc ctttataggg gccgacggcg ttgttgtgtt gcgaacggta
     2041 gcccgtgaag gttttgaccg tgccgtcgtc gagtttgacg gggaaattga cttccaacac
     2101 gcgggtcgga ctcttcagga tttcataaac ggccggatcg gttttcagcc ggtcgcaggc
     2161 ggttttgacc tgtttgcgcg cgatttcaaa cggattgagg gtttcttttg caagggcttc
     2221 agacattttg cttccttttc acaaaaagat tttcaggggc gtgcatttcg ctcattacta
     2281 taaccaattt cccgacaaaa tgtaatagcg tgtagtcggc ataagcccga tttgattaat
     2341 ctatatatga ttttattttt caagccgcac ggaatcagcc cggactccgc ctgaaaaagc
     2401 agcgcgcgcg tccgaaaaat aaatgtcaaa ttaaataaag atataggcat ccttttattt
     2461 tttaaaaatt taattggaac atcgctggga tttcaaaccc ttgcccgatt ccgccccgaa
     2521 atccgaaaac accgcctgca aaacctgttg cgattgttaa caatctatac attagaagcc
     2581 ctgtgcaaac gatgttaaaa taaacccttt caacccgaca ggaaatcaga ttatgaatgc
     2641 agccatcgaa cacgtccaag ccgtcgcctt cgatttggac ggcacactgt gcgattccgt
     2701 ccccgacctt gccgccgccg cagaagcgat gttggagcaa ctcggtatga aaccgctgcc
     2761 tgcaaaagtg gtcgaaagct atgtgggcga cggcatcggc aaactggttc accgcgtcct
     2821 caccaacgac cgcgaccgcg aagccgattc cgaactgtgg gaaaaaggtt tcgtatccta
     2881 tatgaaatac taccgcgacc atttgagcgt cttcacccgc ccctatccca aaaccgaagc
     2941 cgggctggca ttgctcaaat ctttaggcat cccgctcgcc gtcgttacca acaaaaacga
     3001 aatccttgcc gtcgaactgt tgaaacagct cggacttgcc gactacttca gcctgatact
     3061 cggcggcgac agcctgcccg agaaaaaacc cagccccctg ccgctgcggc atgccgccga
     3121 agttttgggt atcgatgttg caaacatggt tatggtcggc gactcgcgca acgacatcat
     3181 cgccgccaaa gccgccggct gcctgagcgt cggcgttacc ttcggttacg gcgatatgac
     3241 gctgctctcg caagacgatg cgacccgccc cgactggatt atcggctcgc tgcccgaaat
     3301 ttacgaaaac ctgcaaccgc agaaaaataa agacgaagaa taaaacaatc tgttcagacg
     3361 gcatcggaat ccgtttccca tgccgtctga atctttccgt gccgaaaccg ccgccatgaa
     3421 accgcaaaaa tccctacgcg cccgcgcgat ggacatcctc tcgcgccaag aagtcagccg
     3481 catcggtctg aaacgcaaac ttgcaccgca cgccgaaagc gaagaagagt tggaaaacgt
     3541 gttaaacgaa tttgccgaac gcaactggca gtcggatttg cgctatgccg aagcctatat
     3601 ccgcagcaaa agccgcaaac acggttcatt gaggctgaaa caggctttgg cgcaacaggg
     3661 catagatgaa gaaaccagcc gcaacctgct tcccgaccgc tcaagcgaaa aacaggccgc
     3721 catagacgtg ttgcgtaaaa aattcaaaca ccccgccgcc gaccttaaag aaaaacaaaa
     3781 acaggcgcgt ttcctcgcct atcgcggatt cgatgccgat accgttcaga cggcattgaa
     3841 acacgcttgg gacgaaaatt gggaagacgg ctgctgacct tccttcttga atctttttgc
     3901 acggcaacat aaccttacgc ccgtttccaa cttttccgat tgagaacaaa atgtccgaac
     3961 aacccgaaaa aaatcataac cccctccttg aggacgaacg caagaacccc gtgtaccgca
     4021 tggggcaggc agttgccgga ttcatgctcg tcgtttgggt cgccgtattg gcactcgtgt
     4081 ttttcctggt cttccgtttt tggctttcct aaacaaaatg ccgtctgaag gcttcagacg
     4141 gcatcggcgg tccatttcgg cagactatcc catcatagct ttttttagct tgaattccac
     4201 ttccccattc cctaaaattt ccccgcaccc atttcaaaac accctttctt aaaacaggta
     4261 caccatgaca caacaacgcc aactgccttc ccacgaactc attatgtccg aactgatgat
     4321 gccggacacc gccaatttca gcggcaacgt acacggcggc gaactcctgc tcctgctcga
     4381 ccaagtcgcc tattcctgcg ccagccgtta cagcggcaat tattgcgtta ccctgtcggt
     4441 tgacaaagtc ctgtttaaag aacccatcca catcggcgat ttggttacct tttacgccgc
     4501 tgtcaactac acgggacgca cctcgatgga aatcggcatc cgtgtcgaag cacaaaacat
     4561 ccgcaccggc gaaatccgcc acaccaacag ctgctacttc acgatggttg cggtcaaaga
     4621 cggcaaaccc gtccctgtcc ctccgctgga aatcctgacc gaccgccaac gctgccgcta
     4681 cgaaaaagcc aaaaaacgca gagacatcag cctgcaagcc tctgaagaca tgtcctgcgg
     4741 ctgctgacgg cggactatgc cgtctgaaag acaggcacat cgcgccatcc gtttccattg
     4801 caaacggatg aaatcaagca aatatagtgg attaaatt
//
LOCUS       DAXIFD010000143         4823 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.143, whole genome shotgun sequence.
ACCESSION   DAXIFD010000143 DAXIFD010000000
VERSION     DAXIFD010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4823
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.143"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(98..1231)
                     /gene="nrdB"
                     /locus_tag="ACFOCN_001701"
     CDS             complement(98..1231)
                     /gene="nrdB"
                     /locus_tag="ACFOCN_001701"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class Ia ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HFC6970808.1"
                     /translation="MSYSTFPKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQ
                     LSFFWRPEEIDVSRDRIDYANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDD
                     LIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFA
                     FAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQL
                     FKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPI
                     PWINAWLSSDNVQVAPQEVEISSYLIGQIDSEVNTDDLGDFEL"
     gene            complement(1445..2425)
                     /locus_tag="ACFOCN_001702"
     CDS             complement(1445..2425)
                     /locus_tag="ACFOCN_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HFC6970809.1"
                     /translation="MTAARAGLVRFNYLKVKQAVQSKQIKGFKLWKSYDEQLEILRSR
                     GLQIDDEKKALGYLRTIGYYRLSGYFYSFRQFAPESSKSRLDEFITDTRFEDVKSLYM
                     FDKKLRQLALDALERIEVALRVNIAHTLGRHDPLAYKDSKYSATGFDHAEWLDRYNRL
                     VEREKKTGFVKHHLEHYADLPVWVACEVWDFGTMSMLYKGMLNKDKDSIAKLYRLKDG
                     KHLQTHLHAFNFIRNVSAHHSRLWNRDITFKASLKGLSDAEWKSLPINKPFVYFCLMK
                     RMLDVICPRTEWGNRLLALLDEFPDVANEAVSLRDMGLENNPRDWRLWQG"
     gene            complement(2391..4670)
                     /gene="nrdA"
                     /locus_tag="ACFOCN_001703"
     CDS             complement(2391..4670)
                     /gene="nrdA"
                     /locus_tag="ACFOCN_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1a ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HFC6970810.1"
                     /translation="MNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVE
                     LKSHIQFYNGIRTDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPP
                     HLYDHVKKLTDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQ
                     NRVTRQIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVR
                     TPTRQFSSCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEAR
                     HTGCIPFFKMFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQ
                     LDYGVQINRLLYTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK
                     RIIPAADLFSTLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKP
                     LDNINDPNGEIALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTS
                     TMGRRSLGIGVINYAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGA
                     CTLFNQTVYSQGKLPIDTYKKDLDAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPS
                     ETSSQIANATNGIEPPRGLVTVKASKDGILKQVVPEFETLKDAYETLWQLPGNEGYLK
                     LVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYHNTRDGA
                     DDTQADIQDDGCAGGACKI"
BASE COUNT         1190 a         1171 c         1137 g         1325 t
ORIGIN      
        1 gaacaataac cgatcctacc cgctgttttt cccatcatac aacatacaaa tgccgtctga
       61 aacatccggc ttcagacggc attttgtcaa aaaacgttta caactcaaaa tcgcccaaat
      121 catccgtatt cacttcagaa tcgatctgac cgatcaaata agaggatatt tccacttcct
      181 gcggcgcgac ctgtacgttg tcggacgaca gccacgcatt aatccacgga atcgggtttt
      241 gatttgcgcc ttcaaatccg gccggcaacc ccaccgcctg catacgcaga ttggtaatat
      301 attcgacgta ttgggataag atttctttgt tcaaaccgat catcgaaccg tccttaaaca
      361 aatatgccgc ccattctttt tcctgttccg ccgctttttt gaagagttgg aaacattcgt
      421 cctgcaactc ggcggcaatt tctgccattt cagaatcatc aacacccgaa cgcatcagat
      481 taagcatatg ctgcgtgccg gtcaggtgca gggcttcgtc gcgggcaatc agtttgatga
      541 ttttggcgtt gccttccatc aactcgcgct cggcaaaagc aaacgagcag gcgaatgaaa
      601 cgtagaaacg gatggcttcc aacacgttga cgcacatcag gcagagatag agttttttct
      661 tcaacccgcg caaagacaca gtaatgggtt ttccgccgac attatgcatc ccttcgccca
      721 acaggttgta atactgggtg tattcgatta agtcatcgta atagcaggca atgtcttcgg
      781 cgcgggcggt aatgtattcg ttttcgacaa tatcatcaaa cacgaccgac ggatcattca
      841 caatattgcg gatgatgtgg gtatagctgc gcgagtgtat ggtttcgctg aagctccacg
      901 tttcaatcca cgtttccagc tcgggaatcg aaaccaaagg cagcaaggca acattcggac
      961 tgcgcccttg gatggaatcg agcagtgttt ggtatttcag attgctgatg aaaatatgtt
     1021 tttcgtgttc aggcaggttg gcgtagtcga tacggtcgcg cgacacgtcg atttcttccg
     1081 gccgccaaaa aaacgacaat tgtttttcaa tcagtttttc aaatacctcg tatttctgct
     1141 ggtcataacg ggcgacattc acaggctgac cgaaaaacat cggctcattc agcgcgtcgt
     1201 ttttggtttt gggaaaggtg ctgtatgaca tgactaggtg ttcgcaggac atggttttct
     1261 caggtttatt taaatttagg aatttggatt tcagacagcc ttatatgttt taagtaaggt
     1321 catctgaatg tatctgtaca ttgaattctt gccttaaata tcgctgttag ttataatctt
     1381 ccccaacaac tcccccaact ttgccaacct acgcggttgg agcaacaagg ttgggggctt
     1441 tcttttatcc ctgccacaat ctccagtctc gcggattatt ttccaaaccc atatcgcgca
     1501 aacttacagc ttcattcgcg acatcgggaa actcatccag taaagcaaga agacggtttc
     1561 cccattcggt tcgcggacaa ataacatcca acatccgttt catcaggcaa aaatacacaa
     1621 acggtttatt gataggcaat gatttccatt ctgcatcaga caaacctttc aagctggctt
     1681 taaaagtaat atccctattc cataatcgac tgtgatgtgc cgaaacgttg cggataaagt
     1741 taaatgcgtg cagatgtgtt tgcagatgct taccgtcttt caaacgatac aatttggcaa
     1801 tagagtcttt atctttattc aacatccctt tatacagcat agacatcgtg ccgaaatccc
     1861 atacttcgca ggctacccag acaggtaagt cggcataatg ttccaaatga tgtttaacaa
     1921 aaccggtttt cttttcgcgc tcgaccagcc tgttatacct atccagccat tccgcatggt
     1981 cgaaacctgt ggcagaatat ttgctatctt tgtaagccaa tgggtcatgc cgtcctaatg
     2041 tatgggcaat atttacccga agcgctactt caattctttc cagtgcatct aatgccaatt
     2101 gccgcaattt cttatcgaac atataaaggc ttttgacatc ttcaaaacga gtatctgtaa
     2161 taaactcatc caacctgctc ttagaacttt caggagcaaa ttgtcggaaa gagtaaaaat
     2221 aaccgcttaa tcggtaataa ccgatggtgc gtaaatatcc taatgccttt ttctcatcat
     2281 caatctgcaa tcctctactt cttagaatct ccaactgctc atcgtaagat ttccaaagct
     2341 tgaagccttt tatctgcttg ctttgcacag cctgtttcac tttcaaatag ttaaatctta
     2401 caagccccgc ccgcgcagcc gtcatcctga atatcggctt gcgtatcgtc cgcgccgtcg
     2461 cgggtgttgt ggtagtacag ggttttgacg ccgtatttgt aagcggtcaa taagtctttg
     2521 agcatttgtt tcatggaaac tttgctgcct tcgaatttgt tcgggtcgta ggcggtattg
     2581 gcggaaatcg attgatcgac gaatttttgc attacgccga caagtttcaa gtagccttcg
     2641 ttgccgggaa gctgccacag ggtttcgtag gcgtctttca gggtttcaaa ttccggtacg
     2701 acttgtttca aaataccgtc ttttgatgct ttgaccgtta ccaatccgcg cggcggctcg
     2761 ataccgttgg tggcgttggc gatttgcgaa ctggtttcag acggcatgag tgcggttaga
     2821 gtagagttac gcaggccgta tttgacgatt tcggcacgca ggctttccca gtcgtaatgc
     2881 aaaggctcgc cgcagacggc atccaaatct tttttgtagg tgtcgatggg cagtttgcct
     2941 tgcgaataaa cggtttggtt aaagagcgta cacgcaccgt attctttggc aaggtttgcc
     3001 gatgctttga gcaggtaata ctgtatggct tcaaaggtac ggtgggtcag accgagcgcg
     3061 gagccgtcgc tgtagcggac accgtttttc gccagataat aagcatagtt aatcacgccg
     3121 atgccgagcg aacggcggcc catagtagag gtacgcgcgg cttctaccgg atatccctga
     3181 taatctaaaa gtgcatcgag cgcacgaacg gtcaagtcgg caagcccttc caattcgtcc
     3241 aagctgttta atgcgcccaa gttaaaggca gacagtgtac acagggcgat ttcgccgttc
     3301 ggatcgttga tattgtccag cggtttggtc ggcagggcga tttccataca caagttggac
     3361 tgatgaacag gcgcgacgcg cggatcgaac gggctgtgcg tattgcagtg atcgacgttt
     3421 tgaatgtaga tgcgcccggt tccggcacgc tcctgcatca gcgtggaaaa caggtcggca
     3481 gccggaatga tgcgcttgcg gatatcaggg tcttgctcgt atttcgtata gagccgctca
     3541 aattcgtctt ggtcggcaaa aaacgcttcg tacaatcccg gaacctcgtt gggcgaaaac
     3601 agcgtaatgt tgccgccctt aatcaggcgg gtgtacagca ggcggttgat ttgcacgccg
     3661 taatcaagct gacggatacg gttgtcttcc acaccgcggt tgtttttcaa caccagcagg
     3721 ctttcggctt cgatatgcca caaggggtag aacaaggttg ccgcgccgcc gcgcacgccg
     3781 ccttgcgaac aggatttgac cgccgcctga aacattttaa agaagggaat gcagccggta
     3841 tgccgcgctt cgccgccccg gatttcgctg tccaaaccgc ggatacgtcc ggcattgatg
     3901 ccgatgcccg cacgctggga aacgtatttc acaatcgcgc tggtagtggc attgatggaa
     3961 tccaaactat cgtcgcattc aatcagcaca cagcttgaga actggcgcgt aggcgtacgc
     4021 acgccgctca taatcggagt cggcagcgat actttaaatg tagaaacggc atcgtaaaac
     4081 cgtttgacgt aacccaagcg cgcctctttc gggtatttgc tgaaaaggca catcgccacc
     4141 aaaacatata aaaactgcgg cgtttcgtaa atttggcggg taacgcggtt ctgtaccaga
     4201 tatttgcctt cgagctgttt gacagcggca taggaaaagg acatatcgcg ttcgtggtcg
     4261 atataggcgt tcagttcgtc aaattcttcg cggctgtaat cctcaaggat atgcctgtcg
     4321 tattttccgg catcggtaag ttttttaacg tggtcgtaaa ggtgcggcgg ctcgtactcg
     4381 ccgtaggcta ttttacgaag atggaaaatc gccaaacgcg cggcaaggta ttggtagtcc
     4441 ggggtatctt ccgaaattaa atcggcagcg gctttgatga tggtttcgtg gatgtcgtcg
     4501 gtgcggatgc cgttgtagaa ctggatgtgc gatttcaact cgacctgaga tacggaaaca
     4561 ttttccaatc cgtccgccgc ccaagtgacg acacggtgaa tcttatccaa atcaatggct
     4621 tctaatcttc cgtctcgttt ggttactttc aaatcagtcg gtgtattcat cgcttcctct
     4681 tccactcttg atattcaaga cacagtcttt tcaaataaat taaggcagac aatatagtgg
     4741 atttttggca ttttctccag tcttgacaac ggttgtattt ttcagtttca ggcaatgcgc
     4801 gataaaaccc gcctgtcgta ttt
//
LOCUS       DAXIFD010000144         4821 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.144, whole genome shotgun sequence.
ACCESSION   DAXIFD010000144 DAXIFD010000000
VERSION     DAXIFD010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4821
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.144"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            82..1047
                     /locus_tag="ACFOCN_001704"
     CDS             82..1047
                     /locus_tag="ACFOCN_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6970811.1"
                     /translation="MLRLTALTLCTVLALGACSPKDSDSAPQAKEQAVSAAQSESASV
                     TVKTARGDVQIPQNPERIAVYDLGMLDTLSKLGVKTGLSVDKNRLPYLEEYFKTTKPA
                     GTLFEPDYETLNAYKPQLIIIGSRAAKAFDKLNEIAPTIEMTADTANLKESAKERIDA
                     LAQIFGKQAEADKLKAEIDASFEAAKTAAQGKGKGLVILVNGGKMSAFGPSSRLGGWL
                     HKDIGVPAVDEAIKEGSHGQPISFEYLKEKNPDWLFVLDRSAAIGEEGQAAKDVLNNP
                     LVAETTAWKKRQVVYLVPETYLAAGGAQELLNASKQVADAFNAAK"
     gene            1211..2179
                     /locus_tag="ACFOCN_001705"
     CDS             1211..2179
                     /locus_tag="ACFOCN_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6970812.1"
                     /translation="MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQ
                     VMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFVEPSMAGAGQSAALGLLLMSLLL
                     PAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
                     ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLG
                     LNRTAVLWSGLIIVALITSLVIVTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLG
                     ASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAHAV"
     gene            2169..3143
                     /locus_tag="ACFOCN_001706"
     CDS             2169..3143
                     /locus_tag="ACFOCN_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HFC6970813.1"
                     /translation="MPSEKNIGFMAGSSRPLWVAFALLLVSCILFMTLNVKGDWDFVL
                     HLRLTKLAALLMVAYAVGVSTQLFQTLTNNPILTPSILGFDSLYVFLQTLLVFTFGGV
                     GYASLPLTGKFGFELAVMMGGSLLLFYTLIRQGGRDLPRMILIGVIFGILFRSLSSLL
                     SRMIDPEEFTAAQANMFAGFNTVHSELLGIGALILLVSAAVVWRERYRLDVHLLGRDQ
                     AVNLGISYTRNTLWILLWIAALVATATAVVGPVSFFGLLAASLANHFSPSVRHSVRLP
                     MTVCIGGILLVGGQTVFEHFLGMKAVLSVVVEFAGGLVFLYLVLRHKK"
     gene            3188..3814
                     /locus_tag="ACFOCN_001707"
     CDS             3188..3814
                     /locus_tag="ACFOCN_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdE family protein"
                     /protein_id="HFC6970814.1"
                     /translation="MTQERLPEFFDRAPTLTVQDPLAAFLGAAENGILTYRYADAVRL
                     CGHSCPTVAGAYLMVIKGLKALYGEELPERGGIEAAMQGARDEGTVGVTASVVQLLTG
                     AAPETGFGGIGMQGRFARRNLLSFGVGEINGTLTLRRKDNGKTVAVGLNAALQPFAPE
                     MRDIMPKAVSGSASAEELERFGQLWQARVKAFLTESADDPQFVIVREV"
     gene            3897..4655
                     /locus_tag="ACFOCN_001708"
     CDS             3897..4655
                     /locus_tag="ACFOCN_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6970815.1"
                     /translation="MITIRNVSYRIGTRPILDNVSLDIPEGGITALVGPNGAGKSTLF
                     SFMARLRPLESGSIAYRGKNLADTPTAELAKTLSILTQENSIMSRITVRDLLMFGRYP
                     YHQGRPTAECRRIVNGAIEEFHLQDLSDRYLTELSGGQRQRAMIAMVFCQSTDYVLLD
                     EPLNNLDMYHARSLMQILRRLTDEHKRTTVVVLHDINQAAAYADHVVAMKNGQVAMQG
                     KPNDIFTAANIKTLFDMDVDVLDYEGKKLVIHHI"
BASE COUNT         1027 a         1417 c         1287 g         1090 t
ORIGIN      
        1 ttatcattta tcctttctag agccgttccg gtttgtccga ccggcggctt tgccccaata
       61 tccccatttt ggagacaccc tatgttgcgt ttgaccgcat tgaccctctg caccgtcctc
      121 gccttgggcg cgtgttcgcc gaaagattcc gactctgccc cacaagccaa agaacaggcg
      181 gtttccgccg cacaatccga aagcgcgtcc gttaccgtca aaaccgcgcg cggcgatgtt
      241 caaataccgc aaaaccccga acgtatcgcc gtttacgatt tgggtatgct cgacaccttg
      301 agcaaactgg gcgtgaaaac cggtttgtcc gtcgataaaa accgcctgcc gtatttagag
      361 gaatatttca aaacgaccaa acccgccgga actttgttcg agccggacta cgaaacgctc
      421 aatgcctaca agccgcagct catcatcatc ggcagccgcg ccgccaaggc gtttgacaaa
      481 ttgaacgaaa tcgcgccgac catcgaaatg accgctgata ccgccaacct caaagaaagt
      541 gccaaagagc gtatcgacgc gctggcgcaa atcttcggca aacaggcgga agccgacaag
      601 ctgaaggcgg aaatcgacgc gtcttttgaa gccgcgaaaa ctgccgcgca aggcaaaggc
      661 aaaggtttgg tgattttggt caacggcggc aagatgtccg ccttcggccc gtcttcacga
      721 ctgggcggct ggctgcacaa agacatcggc gttcccgctg ttgacgaagc catcaaagaa
      781 ggcagccacg gtcagcctat cagctttgaa tacctgaaag agaaaaatcc cgactggctg
      841 tttgtccttg accgcagcgc ggccatcggc gaagagggtc aggcggcgaa agacgtgttg
      901 aataatccgc tggttgccga aacaaccgcc tggaaaaaaa gacaagtcgt ttacctcgtt
      961 cctgaaactt atttggcggc cggcggcgcg caagagctgc tgaatgcaag caaacaggtt
     1021 gcggatgctt ttaacgccgc gaaataatga aacggcggca ttcgatgccg tctgaaacac
     1081 ggatgcaaac cgcttcctgt gtttcagacg gcattgcccg atacggaggc ttcaaacaag
     1141 gctttccgct ccgacggttc ggactgcctt gtttgaatct tctacgcctt aacgcttttc
     1201 ccttctgttt atgactgcca aacctttttc cctcaacctg accaacctcc tgctgctggc
     1261 ggtattgttt gccgtcagcc tgtcggtggg cgttgccgat ttccgctggt cggatgtgtt
     1321 ttcgctatcc gacagccagc aggtcatgtt catcagccgc ctgccgcgca cgtttgcgat
     1381 tgtgctgacg ggcgcgtcta tggcggtggc gggcatgatt atgcagattc tgatgcgtaa
     1441 ccgttttgtc gagccttcta tggcgggtgc gggtcagagt gcggctttgg gtttgcttct
     1501 gatgtccctg ctgctgcctg ccgcgccgct gccggtcaaa atgtcggttg ccgccgttgc
     1561 cgcgctaatc gggatgctgg tgtttatgct gctgatccgc cgcctgccgc cgacggcgca
     1621 actgatggtg ccgctggtgg ggattatttt cggcggcgtg gttgaggcgg tggcgacgtt
     1681 tatcgcgtat gaaaacgaaa tgctgcaaat gctcggcgtg tggcagcagg gcgatttttc
     1741 gagcgtgctg ctggggcggt acgagctgct ttggattacg ggcggtttgg cggtgtttgc
     1801 ctatctgatt gccgaccggc tgacgatttt ggggctgggc gagacggtca gcgtgaattt
     1861 gggtttgaac cggacggcgg tgttgtggtc ggggctgatt attgtagcac tgattacatc
     1921 gctggtcatt gtaacggtcg gcaatattcc gtttatcggg ctggtcgtgc cgaacatcat
     1981 cagccgcctg ataggcgaca ggctgcgcca aagcctgcct gcggtggcct tgttgggcgc
     2041 gtctttggtt ttattgtgcg acattatcgg acgcgtgatt gtgtttccgt ttgaaattcc
     2101 ggtctctacg gtttttggtg tgttgggtac ggctttgttt ttgtggcttt tgttaaggaa
     2161 acctgctcat gccgtctgaa aaaaatatcg gttttatggc aggaagcagc cgtccgttgt
     2221 gggttgcctt tgcgctgttg ctggtttcct gcatcctgtt tatgacgctc aacgtcaaag
     2281 gcgattggga ctttgtactg cacctgcgtc tgaccaaact tgccgcgctg ctgatggtcg
     2341 cctatgcggt cggcgtgtcc acgcaactct tccaaacgct gaccaacaat ccgattctga
     2401 ccccttcaat tttgggtttc gattcgctgt atgtgttttt gcagaccttg ctggtgttta
     2461 cgttcggcgg cgtgggctat gcttccctgc cgttgacggg caaattcggc tttgaacttg
     2521 ccgttatgat gggcggctcg ctgctgctgt tttacacgct catccgtcag ggcggacgcg
     2581 atttgccgcg tatgatttta atcggcgtga ttttcgggat tttgttccgc agcctgtcgt
     2641 cgctgctttc gcgcatgatc gaccccgaag aatttacggc ggcgcaggcg aatatgtttg
     2701 ccggattcaa taccgtccac agcgagcttt tgggcatagg cgcgctgatt ctgctcgtca
     2761 gcgcggcggt cgtttggcgc gaacgctacc gcttggacgt acaccttttg gggcgcgacc
     2821 aagccgtcaa tttgggcatc agctacacgc gcaacacctt gtggatactg ctttggattg
     2881 ccgcattggt ggcgacggcg accgccgtgg tcggcccggt aagctttttc gggcttctcg
     2941 ccgcctcgct tgccaaccac ttttccccgt ccgtgcgcca ttccgtccgc ctgccgatga
     3001 cggtttgtat cggcggtatc ctcttggtcg gcggacagac cgtattcgaa cacttcttgg
     3061 gcatgaaggc ggtattaagc gtggtggtcg aatttgcggg cggactcgtt ttcctctatc
     3121 tcgttttaag acacaaaaaa tgacggatgc catctgaacg gcagcccgcc ccgaaaggac
     3181 aaaccatatg acgcaagaac gtttacccga atttttcgac cgcgccccga cgctgaccgt
     3241 acaagacccg cttgccgcat tcctcggcgc ggccgaaaac ggcatcctca cttaccgcta
     3301 cgccgatgcc gtgcgcctgt gcggacattc ctgcccgacc gtcgcgggcg cgtacctgat
     3361 ggttatcaaa ggtctgaaag ccctttacgg agaagagctg cccgaacgcg gcggcatcga
     3421 agccgccatg cagggagcgc gcgacgaagg cacggtcggc gtaaccgcgt ccgtcgtcca
     3481 acttctcacc ggcgcagccc ccgaaaccgg cttcggaggc atcggaatgc agggacgctt
     3541 cgcccgccgc aacctcttat cctttggtgt aggcgaaatc aacggcacac tgaccctgcg
     3601 ccgcaaagac aacggcaaaa ccgtcgccgt cggcctcaac gccgccctgc aacccttcgc
     3661 acccgaaatg cgcgacatca tgcccaaagc cgtcagcggc agcgcaagcg cagaagaact
     3721 cgaacgcttc ggacaactct ggcaggcacg cgttaaagca tttttaaccg aatcggcgga
     3781 cgacccgcag ttcgtcatcg tccgcgaagt gtgagcgttc agacggcatt ccgaatttca
     3841 aatgccgtct gaaccccgcc aaacaacaac aaacctacgc ccgacaagca tccgccatga
     3901 ttaccatccg caacgtcagc taccgcatcg gcacacgccc catcctcgac aacgtcagcc
     3961 tcgacatccc cgaaggcggc attaccgccc tcgtcggccc caacggtgcg ggcaaatcca
     4021 ccctgttttc ctttatggcg cggctgcgac cgcttgaaag cggcagcatc gcctaccgag
     4081 gcaaaaatct tgccgatacc cccaccgccg aactcgccaa aaccctgtcc atcctcaccc
     4141 aagaaaacag catcatgagc cgcatcaccg tgcgcgacct gctgatgttc ggccgttacc
     4201 cctaccatca aggcagaccg actgccgaat gccgccgtat cgttaacggt gcaatcgaag
     4261 aattccacct gcaagacctc tccgaccgct acctgaccga gctttccggc ggccaacgcc
     4321 aacgcgccat gattgcgatg gtgttctgcc aaagcaccga ctacgtcctt ttggacgaac
     4381 cgctgaacaa cctcgatatg tatcacgccc gctcgctcat gcaaatcctg cgccggctga
     4441 ccgacgaaca caagcgcacc accgtcgtcg tattgcacga catcaaccag gcagcagcct
     4501 acgccgacca cgtcgtcgcc atgaaaaacg gccaagtcgc catgcagggc aaacccaacg
     4561 atattttcac cgccgcaaac atcaaaaccc tattcgatat ggacgtcgac gtcctcgatt
     4621 acgaaggcaa aaaattggtt atccaccata tctaaatccg acaaaaaggc cgtctgaaca
     4681 ttcagacggc aacccatatc ctgacaaaat taagacacga caccggcaga attgacatca
     4741 gcataatatg cacatattaa cagatattaa tgccgaacta cctaactgca agaattaaat
     4801 aaataaataa ataaataaat a
//
LOCUS       DAXIFD010000145         4766 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.145, whole genome shotgun sequence.
ACCESSION   DAXIFD010000145 DAXIFD010000000
VERSION     DAXIFD010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4766
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.145"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..283
                     /locus_tag="ACFOCN_001709"
     CDS             <1..283
                     /locus_tag="ACFOCN_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970816.1"
                     /translation="EAKKQLKLKESWDKDAIMFCDNFGNSLTVWPDDIECELDLRFDY
                     TKFIQKTIDWAIKYNCLLVIEKTGNVVSPNINNLMYEIKAYLESKPWPI"
     gene            508..654
                     /locus_tag="ACFOCN_001710"
     CDS             508..654
                     /locus_tag="ACFOCN_001710"
                     /inference="COORDINATES: protein motif:HMM:NF012755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970817.1"
                     /translation="MWYEANIGLINTMSRSNQAGTRLLYSNYGLLYITTDHYISATRF
                     VAWK"
     gene            666..953
                     /locus_tag="ACFOCN_001711"
     CDS             666..953
                     /locus_tag="ACFOCN_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HFC6970818.1"
                     /translation="MQLEIIGSKIYTEQDFHNQISKIFSIQDYYGNNLDALWDLLSTN
                     VERPITLVWKDAMFSKNQLENIFIEIVNVLERVKKQDEDYGFEEKFNYILE"
     gene            1467..2705
                     /locus_tag="ACFOCN_001712"
     CDS             1467..2705
                     /locus_tag="ACFOCN_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EndoU domain-containing protein"
                     /protein_id="HFC6970819.1"
                     /translation="MIASLTGAAVGGTPVDAQTGGAVGQNAVENNLYLTSEALKKDKQ
                     TARKIYSVIKEQVKHECSSTGRITECRQNIGRIIEFTQDKRFDSRFKDLKKESLYYLN
                     KHPDLVASYLKAEYEKLDREDKSILHRYISPGAEIVSGSLGVVLSGVAGGGSCAETFG
                     LGCAAALVGVTSSYDHVITGTKNFGKKASEQRPTIAVQALKQLGLSEQAAEYVQFSID
                     LFSVGKSGGGIPKAKPVFDAKPRWEVDRKLNKLTTREQVEKNVQETRRRSQSSQFKAH
                     AQREWENKTGLDFNHFIGGDINKKGTVTGGHSLTRGDVRVIQQTSAPDKHGVYQATVE
                     IKKPDGSWEVKTKKGGKVMTKHTMFPKDWDEARIRAEVTSAWESRIMLKDNKWQGTSK
                     SGIKIEGFTEPNRTAYPIYE"
     gene            2736..3155
                     /locus_tag="ACFOCN_001713"
     CDS             2736..3155
                     /locus_tag="ACFOCN_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970820.1"
                     /translation="MKRIKCFCDKFPSGDTFRMCIILDDYDNRVDYYVGIYDYITSTL
                     MSDIYYRSTIDEHFKIIELIENNPNEIYDDGGGQQFCLEFHHDKVIFYHNEFDEEDGY
                     PVLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
     gene            3245..3316
                     /locus_tag="ACFOCN_001714"
                     /pseudo
     CDS             3245..3316
                     /locus_tag="ACFOCN_001714"
                     /inference="COORDINATES: protein motif:HMM:NF026862.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin type 17 domain-containing
                     protein"
     gene            3313..3555
                     /gene="imm31"
                     /locus_tag="ACFOCN_001715"
     CDS             3313..3555
                     /gene="imm31"
                     /locus_tag="ACFOCN_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Imm31 family immunity protein"
                     /protein_id="HFC6970821.1"
                     /translation="MTNLKLDFYSEVIIKDSCPNDLLENGETIKGKKGVVLGISEEDG
                     IIYGYTILLFDIKYCIYIDKKYIIPTGKKFSRDDFY"
     gene            3633..3878
                     /locus_tag="ACFOCN_001716"
     CDS             3633..3878
                     /locus_tag="ACFOCN_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6970822.1"
                     /translation="MKDSTGQMRLATKDLAEAIKRGEVRSSAFTTKQLKAIEKGESKI
                     PDYTWHHHQDTGRMQLINEDLHHDTGHIGWRAMSKGK"
     gene            3881..4270
                     /locus_tag="ACFOCN_001717"
     CDS             3881..4270
                     /locus_tag="ACFOCN_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970823.1"
                     /translation="MWKIIKEDSDDLGFAIKCLFSQSIDLNEFKLWIEQVIRDMPIED
                     IPFYIFDLADFDGGIADIDNIVGFVSSYSLSKSKKNALTGIAFLRGIDVYDPPISKEK
                     ALKALKKHPEIYQKFQHFFPFVELPPL"
     gene            4380..4760
                     /locus_tag="ACFOCN_001718"
     CDS             4380..4760
                     /locus_tag="ACFOCN_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970824.1"
                     /translation="MTKEQGQDLSFATYCLLSAAINLQEFKLWLEKVVLDMPIDNIPF
                     YIFDLIDLKEGVGDIYNILDFVPNSDLSKDQDDALTGIAFLRGIDVYDPPVSKEKALK
                     ALKKHPEIYQRFQHFFPFVELPPL"
BASE COUNT         1626 a          766 c         1050 g         1324 t
ORIGIN      
        1 tgaagcaaaa aaacagctta aattgaaaga atcttgggat aaagacgcaa tcatgttttg
       61 tgataatttt ggtaatagtc ttaccgtttg gccagatgat atagagtgcg aacttgattt
      121 aagatttgat tatactaaat ttattcagaa aaccattgat tgggcaataa aatataattg
      181 tctacttgta atagaaaaaa caggaaatgt agtttcccct aatataaata atctgatgta
      241 tgaaataaaa gcatatttgg aaagcaagcc gtggcccata tgaaacctaa actcaacaag
      301 taggatgtgt gcggaacgca cgtatgcggt tctcaaggtt tgagctaaga ggccgtctga
      361 aaacagaaaa actgtttcag acgacctttc ttttaaccag ttgccacagc aaccggacaa
      421 aagcagccta cctccacatc catataggca atacagggga gatattttgt aaattctacg
      481 aatattttac ctgctaaaca gggtaggata tggtatgaag cgaacattgg cttaataaac
      541 actatgtcaa gatcgaatca ggctggtact agattgttgt attccaatta tggattgcta
      601 tatataacaa ctgatcatta tatctctgca acacggtttg tagcttggaa ataggagtat
      661 aacttatgca attagagatt atcggtagta aaatttatac ggaacaagat tttcataatc
      721 aaatttcaaa aatattttct atacaagatt attatgggaa caatcttgat gctttatggg
      781 atttattaag cacaaatgta gaacgaccga ttactttggt atggaaagat gctatgttct
      841 caaaaaatca attagaaaat atatttattg aaatcgtaaa tgttctagaa agagttaaga
      901 aacaagatga ggattatgga ttcgaagaaa aatttaatta tattttagag taagtaaacc
      961 ctaattacat tacgtacaca ggcttaaaac tccccagagc caattaagca agccgtaacc
     1021 catataaaac ttaaactcaa caagtagcat gtgtgcggaa cgtacgcatg cggttcttaa
     1081 agtttgagct aagaggccgt ctaaaaacag aaaaaccgtt tcagacggtc tttgtttaac
     1141 gccaccgatc cagcgggtta caaagcgcag tcaatgccgc tgcgccttat gcctccgaag
     1201 caataggcag aacatttgga cacggtgaaa acaaaaacga aaccgcccaa gccgtcggac
     1261 atttcctttt aggagcagct attgcccgcg tcaacggtgg taattttgct gccggcggct
     1321 cggcagcagt tgcagctgaa aaggcggcgg aacatcttgc ccaacagtat aacgacggta
     1381 aaaccgcaat cgatccgcaa acaggcgagt tcaatgccaa cctgctgccg gaacatatca
     1441 aagaggaaat caaatcaaag agcggggtga ttgcatcgct gacgggcgcg gccgtgggcg
     1501 gcacgccggt agatgcgcaa accggaggtg cggtcggaca gaatgcggtg gaaaacaacc
     1561 tctatctgac atcggaagcc ttaaagaagg acaagcagac agctcgtaaa atttattccg
     1621 tcataaaaga gcaagtcaag catgaatgca gttccacagg aagaattacc gaatgtcgtc
     1681 aaaatatagg acgcattatc gaatttaccc aagacaaacg ctttgacagt aggtttaagg
     1741 acttaaaaaa agaatcctta tattacctaa ataaacatcc tgatttagta gcctcttatt
     1801 tgaaggctga atacgaaaag ctggataggg aagacaaaag tatcctgcac cgctacatct
     1861 cacccggggc tgaaatcgtt tcgggcagtt tgggggttgt tctttcagga gtagccggag
     1921 gcggatcttg tgccgagact ttcggcttag gctgtgccgc cgctttggtt ggtgtaacgt
     1981 cttcctacga tcatgtcatt actgggacga aaaacttcgg aaaaaaagcc agcgagcaac
     2041 gaccgacgat tgcggttcag gccttgaagc agttggggct gtcggagcag gctgcggaat
     2101 atgttcagtt ctctatagat ttgttcagtg tgggtaaatc ggggggcggt atacctaagg
     2161 ctaagcctgt gtttgatgcg aaaccgagat gggaggttga taggaagctt aataaattga
     2221 caactcgtga gcaggtggag aaaaatgttc aggaaacgag aagaaggagt cagagtagtc
     2281 agtttaaagc ccatgcgcaa cgagaatggg aaaataaaac agggttagat tttaatcatt
     2341 ttataggtgg tgatatcaat aagaaaggca cagtaacagg agggcatagt ctaacccgtg
     2401 gtgatgtacg ggtgatacaa caaacctcgg cacctgataa acatggggtt tatcaagcga
     2461 cagtggaaat taaaaagcct gatggaagtt gggaggtgaa aacgaaaaaa ggtgggaaag
     2521 tgatgaccaa gcacaccatg ttcccaaaag attgggatga ggctagaatt agggctgaag
     2581 ttacttcggc ttgggaaagt agaataatgc ttaaggataa taaatggcag ggtacaagta
     2641 aatcgggtat taaaatagaa ggatttaccg aacctaatag aacagcatat cccatttatg
     2701 aatagtaata tttatgaaaa attaggagat taatgatgaa aagaattaag tgcttttgtg
     2761 ataaatttcc atcaggagat acatttagaa tgtgtatcat tctggatgac tatgataata
     2821 gggttgatta ttatgtagga atatatgatt acattacgtc taccttaatg agcgatattt
     2881 actatcgatc cacgattgat gagcatttca agattataga attaatagaa aataatccaa
     2941 atgaaattta tgatgatggc ggtggtcaac aattttgcct agaatttcat catgataagg
     3001 tcatttttta ccacaatgaa tttgatgaag aagatggtta tccagtatta agctgttcgc
     3061 tgcatacttt taaaactgct ttaattgctt ggaatgcttt tttgcaattg cctaaaagta
     3121 ttcattcggt ggtggagact gtgattgagg aataagcata attagcttaa tgaatagaat
     3181 cagcgatata gattggactg caaatccacg cttatacgct gtgccatgat taacaggaag
     3241 agagcaactt ggatgggcta gtagggatgg taagcattta aatatatcaa ttgatggaaa
     3301 gattacacac aaatgactaa tttaaaatta gatttctact ctgaagttat tataaaagat
     3361 tcttgcccta atgatttgtt agaaaatggt gagactatta aaggaaaaaa aggagtggta
     3421 ttaggtataa gcgaagaaga tggtataatc tatggctata ctattttact ttttgatata
     3481 aaatattgta tatatataga taagaaatat attataccga ctggaaaaaa attctctcgc
     3541 gatgattttt attagctaat ttaagtaatt taagcaagtt ttttagatac tgaaactggt
     3601 aattatgttt atgtaagcat aaggagttca gattgaagga ttctacaggg caaatgaggc
     3661 tggcaaccaa ggatttggcg gaagccatta aacgaggaga agtacgtagt tctgctttta
     3721 caacaaagca actaaaggca atcgaaaaag gagaatctaa aataccggat tacacttggc
     3781 atcatcatca agacactgga aggatgcaat tgattaatga agacttgcat catgataccg
     3841 gccatatcgg ttggagagcg atgagtaaag gaaagtaact atgtggaaaa tcataaaaga
     3901 ggatagtgat gatttaggat ttgcaattaa atgcttattc tctcaatcta ttgatttaaa
     3961 tgaattcaag ttatggattg aacaagtaat acgcgatatg cccatcgagg acatcccttt
     4021 ttatattttt gacttggcgg attttgatgg gggaattgcc gatattgaca atattgtagg
     4081 ttttgtttcg agttacagcc tatcaaaatc gaaaaaaaat gccttgacag gcattgcctt
     4141 cttaaggggg atagatgtct atgatccgcc tatttcaaaa gaaaaagcat taaaagcctt
     4201 aaagaaacat cctgaaattt atcagaagtt tcagcatttc tttccgtttg tagaactgcc
     4261 cccgctttaa acagtcaaaa tgccgtctga aatgatattc ggctttcaga cggcattttt
     4321 gacacaaagc aggtaaccaa aagagcgttt gacggcaaag gaagataatt atgtgaaaaa
     4381 ttacgaaaga gcaaggtcaa gatttaagtt ttgcaacata ttgcttatta tcggcagcaa
     4441 ttaatttgca agaatttaaa ttatggttgg agaaggttgt cttagatatg cctattgata
     4501 atataccttt ttatattttt gatttaattg atcttaaaga aggagtagga gatatttata
     4561 atattttgga ttttgttccg aattcagact tatctaaaga ccaagatgac gcattaacag
     4621 gcattgcctt cttaaggggg atagatgtct atgaccctcc cgtttcaaaa gaaaaagcat
     4681 taaaagcctt aaagaaacat cctgaaattt atcagaggtt tcagcatttc tttccgtttg
     4741 tagaactgcc cccgctttaa acagtc
//
LOCUS       DAXIFD010000146         4732 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.146, whole genome shotgun sequence.
ACCESSION   DAXIFD010000146 DAXIFD010000000
VERSION     DAXIFD010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.146"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            297..995
                     /locus_tag="ACFOCN_001719"
     CDS             297..995
                     /locus_tag="ACFOCN_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6970825.1"
                     /translation="MKSKHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGL
                     VEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH
                     VVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
                     FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTID
                     LLADKVREEQKAAQ"
     gene            complement(1052..2056)
                     /gene="amgK"
                     /locus_tag="ACFOCN_001720"
     CDS             complement(1052..2056)
                     /gene="amgK"
                     /locus_tag="ACFOCN_001720"
                     /EC_number="2.7.1.221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate/N-acetylglucosamine kinase
                     AmgK"
                     /protein_id="HFC6970826.1"
                     /translation="MQRQTELKNWLQTIYPERDFDLSFAAADADFRRYFRATFSDGSS
                     VVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDLGNTTFLTAMLQE
                     QGEAAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELT
                     FKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYD
                     LVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVA
                     GIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
                     "
     gene            2126..4534
                     /locus_tag="ACFOCN_001721"
     CDS             2126..4534
                     /locus_tag="ACFOCN_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HFC6970827.1"
                     /translation="MARLFSLKPLVLALGFCFGTHCAAADAVAAEETDNPTAGGSVRS
                     VSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQ
                     VQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQ
                     QTGEAHNVRMETEHGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASV
                     EADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVP
                     YYFNLAPNLDATFAPSVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQ
                     AKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGG
                     SLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSR
                     QDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDS
                     GATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYY
                     GNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRS
                     DWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKI
                     YLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEMLAGAEYKSSCGC
                     WGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGR
                     NKRP"
BASE COUNT         1144 a         1442 c         1245 g          901 t
ORIGIN      
        1 ttgaaagggg tgtaaccctt ccgaaccagg gcaacgcata gggcggtgct ttatgtgccg
       61 tcctgtgtgt tggaacatca ttagttcccc aacagccgta tccgtctggg gcgacggcgc
      121 gtattgtacg acagaaaccg cttcagacgg catcgggttt gatgccgtcc gaagcggttt
      181 ccccaaacga aaacgtcctt ttccggaggc aaactgtatc aacacgcgga aatgcaataa
      241 aatagccgga ttccgattga tttccaacat ctgtttccaa catcacggag agccgtatga
      301 aatccaaaca cctcgccctc ggcgttgccg ccctgttcgc acttgccgcg tgcgacagca
      361 aagtccaaac cagcgtcccc gccgacagcg cgcctgccgc ttcggcagcc gccgccccgg
      421 cagggctggt cgaagggcaa aactatactg tccttgccaa cccgattccc caacagcagg
      481 caggcaaagt cgaagtcctt gagtttttcg gctatttctg tccgcactgc gcccacctcg
      541 aacctgtttt aagcaaacac gccaagtctt ttaaagacga tatgtacctg cgtaccgaac
      601 acgtcgtctg gcagaaagaa atgctgacgc tcgcacgcct cgccgccgcc gtcgatatgg
      661 ctgccgccga cagcaaagat gtggcgaaca gccatatttt cgatgcgatg gtcaaccaaa
      721 aaatcaagct gcaagagccg gaagtcctca aaaaatggct gggcgaacaa accgcctttg
      781 acggcaaaaa agtccttgcc gcttacgaat ctcccgaaag ccaggcgcgc gccgacaaaa
      841 tgcaggagct gaccgaaacc tttcaaatcg acggtacgcc cacggttatc gtcggcggca
      901 aatataaagt cgaatttgcc gactgggagt ccggtatgaa caccatcgac cttttggcgg
      961 acaaagtacg cgaagaacaa aaagccgcgc agtaagcccg tttgaaaaat gccgtctgaa
     1021 acttggtttt cagacggcat tttgattggg tttaaaacgt aaagcccgtt tccagttctt
     1081 catcgccgac cagttcgacc aagagcgcgt agagcggggc gagttcggca taacggcgcg
     1141 atacgcggcg caggtaattg aggaaacgcg ggatttcggg acggtatttg tctttgccgt
     1201 cacggtagta caggcgtgcg aagatgcctg caaccttcaa gtgccgctgc acgcccatcc
     1261 attcgaacca gcggtaaaac tcgtcaaacg cttcggggac gggcaagccg gcagcccgcg
     1321 ccttttccca gtagcggata accaagtcca agacaaattc ttcttcccat tcgataaagg
     1381 catcgcgcaa cagcgacacc aaatcgtagg aaatcgggcc gtaaagcgcg tcttggaagt
     1441 ctaaaacgcc cggtctgccg cgcgtcagca tcaggttgcg gacgataaag tcgcggtgca
     1501 catagacttt gggctgcgcc aacaggggcg gcagcagcgt atcgacggtt tgctgccaaa
     1561 gttggcgttg tttgaatgtt aattcgcgcc ccaattcttt tgcgacaaac cattccggga
     1621 acaggttgat ttcgcgcagc atcgtttcac ggtcatattc gggcaaaacc ccttcacggc
     1681 ttgccttctg caattcgacc agctcgccga ttgcctccaa aagcagggct ttgtgcgccg
     1741 cttcgccctg ctcctgaagc atcgcggtca aaaacgtcgt attgcccaag tcgttcaata
     1801 ccacaaaccc caaatccgtg tccgcgtgca atacctgcgg tacattgacc atgtcaaaca
     1861 gtttctgcac tttcaaataa ggtgcgacac tcatcttgtc gggcggtgca tccatgcaga
     1921 cgacactgct gccgtctgaa aacgttgcac ggaaatagcg gcggaaatca gcatccgccg
     1981 ccgcgaagga cagatcgaag tcccgttcgg gatagatggt ctgaagccaa tttttcagtt
     2041 cggtttgccg ttgcataaca gtactaaagc atttcaggtt acaataaacg ctattctaac
     2101 tggcaaaccg acttgagggg cgattttggc tcgtttattt tcactcaaac cactggtgct
     2161 ggcattgggc ttctgtttcg gcacgcattg cgccgccgcc gatgccgttg cggcggagga
     2221 aacggacaat ccgaccgccg gaggaagcgt tcggagcgtg tccgaaccca tacagcctac
     2281 cagcctgagc ctcggttcga cctgcctgtt ttgcagtaac gaaagcggca gccccgagag
     2341 aaccgaagcc gccgtccgag gcagcggcga agcatccatc cccgaagact atacgcgcat
     2401 tgttgccgac aaggtggaag gacagtcgca ggtgcaggtg cgtgccgaag gcaacgtcgt
     2461 cgtcgaacgc aaccggacga ccctcaatac cgattgggcg gattacgacc agtcgggcga
     2521 caccgttacc gcaggcgacc ggttcgccct ccaacaggac ggtacgctga ttcggggcga
     2581 aaccctgacc tacaatctcg agcagcagac cggggaagcg cacaacgtcc gtatggaaac
     2641 cgaacacggc ggacggcggc tgcaaagcgt cagccgcacc gccgaaatgt tgggcgaagg
     2701 gcattacaaa ctgacggaaa cccaattcaa cacctgttcc gccggcgatg ccggctggta
     2761 tgtcaaggcc gcttccgtcg aagccgatcg ggaaaaaggc ataggcgttg ccaaacacgc
     2821 cgccttcgtg ttcggcggcg ttcccatttt ctacacccct tgggcggact tcccgcttga
     2881 cggcaaccgc aaaagcggcc tgcttgttcc ctcactgtcc gccggttcgg acggcgtttc
     2941 cctttccgtt ccctattatt tcaaccttgc ccccaatctc gatgccacgt tcgcgcccag
     3001 cgtgatcggc gaacgcggcg cggtctttga cgggcaggta cgctacctgc ggccggatta
     3061 tgccggccag tccgacctga cctggctgcc gcacgacaag aaaagcggca ggaataaccg
     3121 ctatcaggcg aaatggcagc atcggcacga catttccgac acgcttcagg cgggtgtcga
     3181 tttcaaccaa gtctccgaca gcggctacta ccgcgacttt tacggcaaca aagaaatcgc
     3241 cggcaacgtc aacctcaacc gccgtgtatg gctggattat ggcggcaggg cggcgggcgg
     3301 cagcctgaat gccggccttt cggttctgaa ataccagacg ctggcaaacc aaagcggcta
     3361 taaagacaaa ccgtatgccc tgatgccgcg cctttccgcc gattggcgca aaaacaccgg
     3421 cagggcgcaa atcggcgtgt ccgcacaatt tacccgcttc agccacgaca gccgccaaga
     3481 cggcagccgc ctcgtcgtct atcccgacat caaatgggat ttcagcaaca gctggggtta
     3541 cgtccgtccc aaactcggac tgcacgccac ctattacagc ctcaaccgct tcggcagcca
     3601 agaagcccga cgcgtcagcc gcactctgcc cattgtcaac atcgacagcg gcgcaacttt
     3661 tgagcggaat acgcggatgt tcggcggcgg agtcctgcaa accctcgagc cgcgcctgtt
     3721 ctacaactat attcctgcca aatcccaaaa cgacctgccc aatttcgatt cgtcggaaag
     3781 cagcttcggc tacgggcagc tctttcgcga aaacctctat tacggcaacg acaggattaa
     3841 caccgcaaac agcctttccg ccgccgtgca aagccgtatt ttggacggcg cgacggggga
     3901 agagcgtttc cgcgccggca tcggtcagaa attctatttc aaggatgatg cggtgatgct
     3961 tgacggcagc gtcggcaaaa aaccgcgcaa ccgttccgac tgggtggcat ttgcctccgg
     4021 cagcatcggc agccgcttca tcctcgacag cagcatccac tacaaccaaa acgacaaacg
     4081 cgccgagaac tacgccgtcg gtgcaagcta ccgtcccgca cagggcaaag tgctgaacgc
     4141 ccgctacaaa tacgggcgca acgaaaaaat ctacctgaag tccgacggtt cctattttta
     4201 cgacaaactc agccagctcg acctgtccgc acaatggccg ctgacgcgca acctgtcggc
     4261 cgtcgtccgt tacaactacg gttttgaagc caaaaaaccg atagaaatgc tggcgggtgc
     4321 ggaatacaaa agcagttgcg gctgctgggg cgcgggcgtg tacgcccaac gctacgttac
     4381 cggcgaaaac acctacaaaa acgctgtctt tttctcactt cagttgaaag acctcagcag
     4441 tgtcggcaga aaccccgcag acaggatgga tgtcgccgtt cccggctata tccccgccca
     4501 ctctctttcc gccggacgca acaaacggcc ctgaccgtcg gaaacccggc aggagcaccg
     4561 ttcccgcaca agacggcatt ccaccgacaa ccccaaaccc gccatcaaag gcaggattca
     4621 aacgataagg aaagaatgat gaaaatcaaa gccctgatga ttgccgccgc attgctggca
     4681 gcagccgatg tccacgccgc accgcaaaag gcaaaaaccg catccgccaa ag
//
LOCUS       DAXIFD010000147         4650 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.147, whole genome shotgun sequence.
ACCESSION   DAXIFD010000147 DAXIFD010000000
VERSION     DAXIFD010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4650
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.147"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            110..1051
                     /gene="miaA"
                     /locus_tag="ACFOCN_001722"
     CDS             110..1051
                     /gene="miaA"
                     /locus_tag="ACFOCN_001722"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HFC6970828.1"
                     /translation="MPTPKAFALLGPTACGKTALALKIAETLPVEIISLDSALVYRDM
                     DIGTAKPSHAERSFVPHHLIDIITPVQTYSAARFVEDCTRLIGEITARGKYPLIVGGT
                     MMYFRALTQGLNDLPEADACLRADLDEQKQMYGLDFLYRTLQKVDPETACRLKPNDSQ
                     RIGRALEVYYLTGKPMSTHLGSPTSHTLPFDLHTAALIPENRARLHENIALRFHLMLE
                     QGFIGEVENLRRLYPSLTADSPAIRCVGYRQAWEYLDGKTDFPAFVEKGIAATRQLAK
                     RQLTWLRKTPLDCVTDPFSDGNSCTRLIEAAKRFFGA"
     gene            1055..1774
                     /gene="tadA"
                     /locus_tag="ACFOCN_001723"
     CDS             1055..1774
                     /gene="tadA"
                     /locus_tag="ACFOCN_001723"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HFC6970829.1"
                     /translation="MLTTPPLAPKTVAALHRLGIRTLEELRQNGAVQTFLLLKASGLT
                     LTKSTLWQLQSLLDGTPPQEMAQHDKTRLLAELKNHPPVAAFPPQGEMAHFMGLALEQ
                     AKLSALMGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQAGSEMQNYRLD
                     GCDIYITLEPCAMCASALIQARIRRVIYGAAEPKTGAAGSIVNLFADKRLNTHTAIRG
                     GILQEECRAVLSRFFQNKRKG"
     gene            1779..2267
                     /locus_tag="ACFOCN_001724"
     CDS             1779..2267
                     /locus_tag="ACFOCN_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HFC6970830.1"
                     /translation="MTALLVILALALIAAGTAGIVYPALPGLALMFAGTWLLAYSGGY
                     QIYGAGVLWTVGLISLAGILADYVAGIWGTKYTGAGKLAVRGALVGSIIGMFFSLPGL
                     ILGPFIGAAAGELIDRRNMLQAGKAGLGTLLGLVVGTAFKIGCAVSILFILLVKYIAY
                     LF"
     gene            2333..3085
                     /gene="rlmB"
                     /locus_tag="ACFOCN_001725"
     CDS             2333..3085
                     /gene="rlmB"
                     /locus_tag="ACFOCN_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HFC6970831.1"
                     /translation="MANQRPIYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEK
                     AANENIRVYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILD
                     GITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLAR
                     TLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP
                     MFGTVESMNVSVSAGMVLSETRRQRVLKNEKA"
     gene            complement(3147..4538)
                     /locus_tag="ACFOCN_001726"
     CDS             complement(3147..4538)
                     /locus_tag="ACFOCN_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleobase:cation symporter-2 family protein"
                     /protein_id="HFC6970832.1"
                     /translation="MSGQLGKGADAPDLVYGLEDRPPFGNALLSAVTHLLAIFVPMIT
                     PALIVGGALELPVEMTAYLVSMAMVASGVGTYLQVNRFGPVGSGMLSIQSVNFSFVTV
                     MIALGAGMKEGGLTKDAMISTLLGVSFVGAFLVCFSAWLLPYLKKVITPTVSGVVVML
                     IGLSLVHVGITDFGGGFGAKADGTFGSMENLGLASLVLLIVLIFNCMKNPLLRMSGIA
                     VGLIAGYIVALFLGKVDFSALQNLPLVTLPVPFKYGFAFDWHAFIVAGAIFLLSVFEA
                     VGDLTATAMVSDQPIEGEEYTKRLRGGVLADGLVSVIATALGSLPLTTFAQNNGVIQM
                     TGVASRHVGKYIAVILVLLGLFPVVGRAFTTIPSPVLGGAMVLMFGLIAIAGVRILVS
                     HGIRRREAVIAATSVGLGLGVAFEPEVFKNLPVLFQNSISAGGITAVLLNLVLPEDKT
                     EAAVKFDTDHLEH"
BASE COUNT         1162 a         1490 c         1126 g          872 t
ORIGIN      
        1 aaggcatacg gtaaacacgc ccccttgccg tcggcgtgct tccgcaaacc aaaatataac
       61 gtcggcacgc tttccgctat aatccgtatt tttccaaacc tgaaacgtta tgccgacccc
      121 gaaagccttt gccctgctcg ggccgaccgc ctgcggcaaa accgcgctcg ccctcaaaat
      181 tgccgaaacc ttgcctgtcg aaatcatcag cctcgattcc gcgctggttt accgcgatat
      241 ggacatcggc acggcgaaac cgtctcatgc cgagcgttcc tttgtaccgc accaccttat
      301 cgacatcatt acgcctgttc agacatacag tgccgcccgt tttgtcgaag actgcacgcg
      361 tctgattggc gaaatcacgg cgcgtgggaa atatccgctg attgtcggcg gcacgatgat
      421 gtatttccgc gccctgaccc aaggtttgaa cgatttgccc gaagccgacg cctgcctgcg
      481 tgccgacttg gacgaacaaa aacaaatgta cggcttggat ttcctctacc gcaccctgca
      541 aaaagtcgac cctgaaacag catgccgtct gaaaccgaac gacagccagc gtatcggacg
      601 cgctttggaa gtttattatt taaccggcaa accgatgagt acgcatctcg gcagcccaac
      661 ctcccatacg ctccccttcg atttgcatac cgccgccctg attcccgaaa accgcgcccg
      721 cctgcatgaa aacatcgccc tgcgtttcca cctgatgctt gaacagggct ttatcggcga
      781 agtagaaaac ctgcgccgcc tctatcccag cctgaccgcc gactcccctg ccatacgctg
      841 cgtcggctac cgtcaggcat gggaatatct ggacggaaaa accgatttcc cggcatttgt
      901 cgagaaaggc attgccgcca cgcgccaact tgccaaacgc caactgactt ggttgcgcaa
      961 aacaccttta gactgcgtta ccgacccgtt ttcagacggc aattcatgca cacgcctgat
     1021 tgaggcggca aaacggtttt tcggcgcata aactatgctg accacgccgc cgctcgcccc
     1081 caaaaccgtc gccgccctac acaggctcgg tatccgtacg ctcgaagaac tgcggcaaaa
     1141 cggcgcggtt caaaccttct tgttattgaa ggcatcaggt ttgaccctca cgaaaagcac
     1201 gctgtggcag cttcagtcgc tgctggacgg cacgccgccg caagaaatgg cgcaacacga
     1261 taaaacccgc ctgcttgccg agttgaaaaa ccatccgccc gtcgccgcct ttcccccgca
     1321 aggcgaaatg gcgcatttca tgggtttggc attggaacag gcgaaactgt ccgcattaat
     1381 gggcgaaata cccgtcgggg cagtcatcgt ttcagacggc aaaatcatcg catcggcaca
     1441 caacacctgc attgccgact gcaatgtcag ccggcacgcc gaaatcaacg ccttggcaca
     1501 ggcaggcagc gaaatgcaaa actaccgcct tgacggatgc gacatctaca tcaccctcga
     1561 accctgcgcc atgtgcgcgt ccgcactgat acaggcacga atcaggcgcg tgatctacgg
     1621 tgcggcagaa cccaaaaccg gcgcggcagg aagcatcgtc aacctgtttg ccgacaaacg
     1681 cctcaatacg cacaccgcca tacggggcgg aatcctgcaa gaagaatgcc gcgccgtatt
     1741 aagccgtttt ttccaaaaca aaagaaaagg ttgaacctat gaccgccttg ctcgtcatcc
     1801 tcgccctcgc cctgatagcc gccggtacgg cgggcatcgt ttaccccgcc ctgcccggat
     1861 tggcattgat gtttgccgga acctggctgc tcgcctactc cggcggctac caaatctacg
     1921 gcgcgggcgt tttgtggacg gtcggactca tcagccttgc cggcatactg gcggactatg
     1981 tggcaggcat atgggggaca aaatataccg gagcgggcaa gctcgccgtt cgcggcgcat
     2041 tggtcggcag tatcatcggt atgtttttct cccttcccgg actaatactc ggtcccttta
     2101 tcggcgcggc ggcaggcgaa ctgatcgatc ggcgcaatat gcttcaggca ggtaaagcgg
     2161 gcttgggtac gctgttgggg cttgtcgtcg gcacggcgtt caaaatcggc tgcgccgtat
     2221 ccatcttgtt tatcctgttg gtgaaataca tcgcctacct gttttaaccc cttcagacgg
     2281 cataccggca aattgctaca atgccgtctg aacccttttc acaaagcacc atatggcaaa
     2341 ccaaagacct atctacggct tccatgccgt caacgcccga ttgtggcaaa accccaaatc
     2401 catcgtcgaa ctctatgtcc aagaaggcaa aaacgatgta cgcacgcgcg aagtgttgga
     2461 aaaggcggca aacgaaaaca tccgcgtata ttttgccgat gccgaccgcc tcaacgccat
     2521 cagcaaaggt gcgcgccatc agggcgtggt cggatttatc gatgcctcca aaaaccacgt
     2581 ccacctcgaa gacgtattgg aaaacttaag cgaaccgccg ctgctgctga tactcgacgg
     2641 catcaccgat ccgcacaacc tcggcgcgtg cctgcgtacc gccgacgcaa tgggcgtaca
     2701 tgccgtcatc gcaccgaaag acaaaagcgc ggggctgaac gccaccgtca gcaaagtcgc
     2761 cagcggcgcg gcggaaaccg tcccctacat caccgtaacc aacctcgccc gcaccctgcg
     2821 cgagctgaaa gaatacggca tttggatcat cggcaccgat atgggcggca acgccgacct
     2881 ttaccattgc gatctgcccg acagcgcggc atgggtgatg ggcaacgaag gcgacggtat
     2941 gcgccgcctg acacgcgaac attgcgacat gctggtgtcc atacccatgt tcggcacggt
     3001 cgaaagcatg aacgtctccg tgtctgccgg aatggtatta agcgaaaccc gccggcagcg
     3061 cgtattaaaa aacgaaaaag cgtaagcctc aaaaacaatg ccgtctgaaa cagggattct
     3121 gtttcagacg gcattcgttt tcaaaatcag tgttccaagt ggtcggtatc aaacttgacc
     3181 gccgcctcgg ttttatcttc gggcaagacc aaattcagca agactgccgt aatgccgccg
     3241 gcggaaatag agttttggaa caagacaggc aggtttttaa acacttccgg ctcaaacgcg
     3301 acacccaagc ccaaaccgac cgacgttgcc gcaattaccg cttcgcgcct gcggatgccg
     3361 tggctgacca aaatccgcac gcccgcaatc gcaatcaagc cgaacatcaa aaccatcgcg
     3421 ccgcccaaca ccggactcgg aatcgtcgta aacgcgcgtc cgacaacggg gaacagaccc
     3481 aacagcacca aaatcacggc aatatatttg cccacatggc gcgaagccac gccggtcatc
     3541 tgaatcacgc cgttgttttg cgcaaacgtc gtcagcggca gcgaacccaa agccgtcgca
     3601 atcaccgaca ccaagccgtc agccaacacg ccgccgcgca ggcgtttggt gtattcctcg
     3661 ccttcaatcg gctgatcgga caccattgcc gtcgccgtca aatcgccgac cgcctcaaac
     3721 acgctcaaca ggaaaatcgc gcccgccaca ataaatgcgt gccagtcgaa agcaaaaccg
     3781 tatttaaacg gtacgggcag cgtaaccagc ggcaggtttt gcagcgcgga aaaatccacc
     3841 ttgcccaaaa acagcgcgac aatgtaaccg gcaatcagac cgaccgcgat gccgctcatc
     3901 cgcaacagcg ggtttttcat gcagttgaat atcaacacaa tcagcaacac cagcgaagcc
     3961 agccccaagt tttccatcga gccgaacgtg ccgtccgcct tcgcgccgaa gccgccgccg
     4021 aaatcggtaa taccgacgtg taccaaactc aagccaatga gcatcacgac cacgccgctg
     4081 accgtcggcg taatcacttt tttcaaatac ggcaaaagcc acgccgagaa acacaccaaa
     4141 aacgcgccga caaacgatac acccaagagc gtcgaaatca tcgcatcctt agtcaaaccg
     4201 ccctccttca tccctgcgcc cagcgcaatc atcacggtaa cgaacgaaaa attcaccgac
     4261 tggatggaca gcatccccga accgaccggc ccgaagcggt tgacctgcaa ataagtgccg
     4321 acacccgacg caaccatcgc catcgacacg agatacgccg tcatctccac cggcaattcc
     4381 agcgcgccgc ccacaatcag cgcgggcgta atcatcggca caaaaatcgc caaaagatgg
     4441 gtaaccgcgc tcaagagcgc attaccgaac ggcggcctgt cttccaaacc gtacaccaaa
     4501 tcaggcgcat ccgcaccttt gcccaactga ccgctcattg tatttcctta ttttaaaggt
     4561 tgaaaaatcc aagcgcggat tgtagcgaat ctgccgcacg gcttcaattt gcatttcaga
     4621 cggcatccgt ctggtccaca cgtttaccac
//
LOCUS       DAXIFD010000148         4523 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.148, whole genome shotgun sequence.
ACCESSION   DAXIFD010000148 DAXIFD010000000
VERSION     DAXIFD010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4523
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.148"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1017..1787)
                     /gene="xth"
                     /locus_tag="ACFOCN_001727"
     CDS             complement(1017..1787)
                     /gene="xth"
                     /locus_tag="ACFOCN_001727"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6970833.1"
                     /translation="MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPA
                     AALQMMGWHCVWSGQKTYNGVAIVSRNAPEDVHIGLPALPDDPQRRVIAATVGGVRVI
                     NVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMARHGKLVLLGDFNIAPADADCYDPE
                     KWYEKIHCSTVERQWFQNLLDLGLTDSLRHIHPEGAFYTWFDYRGAMFQRKLGLRIDH
                     ILVTSEMAAVLKDVRVDLETRALERPSDHAPVAAEFDW"
     gene            complement(1847..2128)
                     /locus_tag="ACFOCN_001728"
     CDS             complement(1847..2128)
                     /locus_tag="ACFOCN_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HFC6970834.1"
                     /translation="MNTIPLHTILKLMAHPERMAILIQLLDSERNIAELAKSLSLPAT
                     AVSGHLSRLRVEGLVDFTRYHRIIEYRLISEDAATILRTIRDLENKRAV"
     gene            2185..2463
                     /locus_tag="ACFOCN_001729"
     CDS             2185..2463
                     /locus_tag="ACFOCN_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970835.1"
                     /translation="MIVIIFINLIINQIFMDDCTGLYVPFPTFFANTRKGGLSDGIKL
                     PPLPCLTLLPNGIIRIVQKMPYNRRTSCPADASVPSGKQNTCLKCCFF"
     gene            complement(2596..3477)
                     /gene="nadC"
                     /locus_tag="ACFOCN_001730"
     CDS             complement(2596..3477)
                     /gene="nadC"
                     /locus_tag="ACFOCN_001730"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HFC6970836.1"
                     /translation="MPSENTLFPLPDTLLRPMVEQALSEDLGRRGDITSAAVIAPDKT
                     AKLFLVSREDGVIAGMDLARLAFQTMDPSVRFQAEIRDGQVVRAGQTLAAVEGNARAL
                     LAAERTALNYLTHLSGISTATARAVAEVAKYGTDIVCSRKTIPLLRVLQKYAVRAGGG
                     VNHRMGLDDAVLIKDNHLAYCDSIAQAVRQAKQAVGPLTCVEIEVDTLAQLDEAIAAG
                     AERILLDNMDDETLKEAANRCHTQTAHPHTVYCEASGGIGFDRLKRVAQTGVDGIALG
                     YLTHSSRSLDIGLDFLA"
     gene            complement(3552..4490)
                     /locus_tag="ACFOCN_001731"
     CDS             complement(3552..4490)
                     /locus_tag="ACFOCN_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970837.1"
                     /translation="MDAYPEAEAPPQSIVELVPVLIAVTDGGLRVLTVAQGTLLPNGP
                     LSPLRNSLQAGVKLWVAKQTSQPMGYVEQLYTFVDTHRRNEHGMPVLYVSYLGLVREA
                     ADSILHPDAKWQDCYGYFPWEDLRTDGGQRDAVVGRLRIWANSADTEEVRQKRLKRIH
                     LCWGVEPENWSEEYVLQRYEMLYESGLIEEAAEPQANFDFALTGQPMRHDHRRVLATA
                     LSRLRAKIKYRPVIFELMPPEFTLLQLQNSVEAISGRLLHKQNFRRQIQQQNLIEPSD
                     TGVSGSKGRPAQLCRFRDDVLPDRLISDIGLPLGSR"
BASE COUNT         1040 a         1134 c         1205 g         1144 t
ORIGIN      
        1 ctgatgcaga tatagtggat taacaaaaat caggacaagg cgacgaagcc gcagacagta
       61 caaatagtac ggcaacgctg tactggttta aatttaatcc actatatttt gtaatagctg
      121 ccattatgcc tactaggata tataccttct atataatcct tatttaaata aaaaccctta
      181 taaaaatctg tgttatctgt cgggattgaa aaaaagattt tatctttctc atcaggttta
      241 tatttgctat caatatcaaa aagagaataa ggattacaat gagttcgaca tactaggtaa
      301 aaatttatat cttggatcat gaaatattcg atatttatca ggatcgaaag atgctaaaaa
      361 ttcatcaata tcggtactgg atattttgtc atcactaata aacatcgcta gagatgggcg
      421 actttgattt tccatttgtt gattagtaaa ggatataaat actaacttgc cattgtcaaa
      481 ccacatagat ttatatagtg gattaaattt aaaccagtac gtcgttgcct cgccttgccg
      541 tactatttgt actgtctgcg gcttcgtcgc cttgtcctga tttttgttaa tccactatag
      601 ttattgcctt tgggagaatc aattctgaca gcacataaca taggttcatc tttacagtcg
      661 ttatattggg tttcatcaaa ctcaactgca tagcacaata aaggcaatag gaaaaaaagg
      721 agattaattt attactatac ataaggcagc ctgattattc attctaaaat aaatccggtt
      781 tttaatattt gattctgctc cggattatat acataataaa ttttactgct ccaaaatctg
      841 atattaaccc tatggatttc ataaattttt cagaaaaata ggctgtgctt gaacaatccg
      901 ccgactccgg ctgtttgtca gggaaaaggc aattattttc ggttagtcag cagcctatcc
      961 tattgaatca cttaaagata tggatgtttg tcaacgccat atcaaaacac ggtcttttac
     1021 caatcgaatt ctgccgccac gggcgcgtgg tcgctcggac gttccagcgc gcgcgtctcc
     1081 aaatcgacac ggacatcctt caaaacggcc gccatttcgg atgtaaccaa tatatggtcg
     1141 atacgcaggc ccagtttgcg ctggaacatc gcgccgcgat agtcgaacca tgtgtaaaac
     1201 gcaccttcgg gatggatatg gcgcaaactg tcggtcaatc ccaaatccag caggttttga
     1261 aaccactgcc gttcgacggt cgaacagtgg attttttcat accatttttc agggtcgtaa
     1321 cagtccgcat cggcaggcgc gatattgaaa tcgcccaaca gcaccagttt gccgtggcgt
     1381 gccatttcat cgcggacaaa ttcggttaac gcggcaaacc attgttcttt atatttgaat
     1441 ttcgggctgt cgagggcttc gccgttgacg caatagacat tgatgacgcg cacgccgccg
     1501 acggttgccg caatcacgcg ccgttgcgga tcgtccggca gcgcgggcag cccgatatgc
     1561 acgtcttccg gcgcgttgcg gctgacgatt gccacgccgt tgtaggtttt ctgcccgctc
     1621 caaacacagt gccagcccat catctgcaag gcggcagccg gaaatttgtc ctgatcgagt
     1681 ttgagttcct gcaaaaccaa aatatcgggc ggattgtcgg caagcaggtt ttgcacctgc
     1741 ggcagccgca cattgagcga attgacgttc caagtggtga ttttcataac atttccgaaa
     1801 aatgccgtct gaaacgttca gacggcaaaa ggaaaggatt ttaacactat accgcgcgtt
     1861 tgttttccaa atcgcggatt gtccgcagaa tcgttgccgc gtcttcggaa atcaggcggt
     1921 attcgataat gcggtggtaa cgcgtaaagt ccaccagacc ttccacgcgc agtcggctca
     1981 aatggccgga aacggcggtg gccggcaggg ataaggattt tgccagttcg gcgatattgc
     2041 gttcgctgtc caacagttgg atcagtatcg ccatacgttc gggatgcgcc ataagtttga
     2101 gtatggtgtg gagcggtatt gtgttcatcg gtattcctaa aacctttgcc gcccgccaag
     2161 cggattgacg ggcgacagat atggatgatt gtgattatct ttataaatct tattataaat
     2221 caaatattta tggatgattg tacaggattg tatgttcctt ttcccacttt ttttgcaaac
     2281 acgcgtaaag gcgggctttc agacggcata aaactgccgc ccctaccctg cctcaccctg
     2341 ttgccgaacg gaatcatccg cattgttcaa aagatgcctt acaaccgccg cacgtcttgc
     2401 cctgccgatg cctccgtgcc ttcgggcaaa caaaatacct gcctgaaatg ctgttttttc
     2461 taaagcatca cgaccttcac gaaaaatgcc gtctgaagaa tctttcagac ggcatttcct
     2521 ccttgaggca ataaccggat tacggttagg cggttccttg tctgacatat cagacaactg
     2581 ccgacaccct aaaactcatg ccaagaaatc caaacctatg tccaacgagc ggctgctgtg
     2641 ggtcagatag ccgagggcga tgccgtccac gccggtttgc gccacgcgct tcaggcggtc
     2701 gaagccgatg ccgcccgatg cttcgcaata gacggtgtgg gggtgggcgg tttgcgtgtg
     2761 gcagcggttt gccgcttctt tcagggtttc gtcgtccatg ttgtccagca aaatccgttc
     2821 cgcgcccgct gcgatggctt cgtccagttg tgccaacgtg tccacttcga tttctacgca
     2881 ggtcaacggt ccgaccgcct gttttgcctg ccgaacggct tgggcgatgc tgtcgcaata
     2941 ggcgaggtgg ttgtctttga tgagtacggc atcgtccaaa cccatgcggt ggttcacgcc
     3001 gccgcccgcc ctgacggcgt atttttgcag gacgcgcagc agggggatgg ttttgcggct
     3061 gcacacgatg tctgtaccgt atttggcgac ttcggcaacg gcacgcgcgg tggcggtgga
     3121 gatgccgctc aagtgcgtga ggtagttgag cgcggtgcgt tcggcggcga gcagcgcgcg
     3181 ggcgttgcct tcgacggcgg caagcgtctg acctgcgcgg acgacttgcc cgtctcggat
     3241 ttcggcttgg aagcggacgg acggatccat cgtctgaaag gcgaggcgcg ccaagtccat
     3301 gccggcgata acaccgtctt cgcggctgac gaggaaaagt ttggcggttt tatcgggcgc
     3361 gatgacggcg gcggacgtaa tgtcgccgcg cctgcccaaa tcttcgctca aggcttgttc
     3421 caccatgggg cgcaacaggg tgtcgggcag tgggaagagg gtgttttcag acggcatggg
     3481 gtttcctttg ttgaaaaaga ttgatgttgc accgatgggc aaaacttcgt ttgatgtcgt
     3541 ctgaaaacgg gctaacggct gcccagcggc aatccgatgt ccgaaatcag cctgtcgggc
     3601 aggacgtcgt cgcggaagcg gcaaagctgc gcgggacggc ctttgctgcc cgatacgccg
     3661 gtatccgacg gctcgataag gttttgctgc tgaatctggc ggcggaagtt ttgcttgtgc
     3721 agcaatctgc cgctgatggc ttcgacgctg ttttgcagtt gcagcaacgt gaattcgggc
     3781 ggcatcagtt cgaaaatcac ggggcggtat ttgattttgg cgcgcaggcg ggacagggcg
     3841 gtcgccagta cgcggcggtg gtcgtggcgc atgggctgcc ccgtaagcgc gaagtcgaag
     3901 tttgcctgcg gctcggcggc ttcctctatc aggccgcttt catacaacat ttcatagcgt
     3961 tgcaaaacgt attcttccga ccagttttcc ggttcgacgc cccaacacaa atgaatgcgc
     4021 ttgagccgct tttggcggac ttcctccgtg tccgccgagt ttgcccaaat gcgcaggcgg
     4081 ccgacgacgg cgtcgcgctg cccgccgtcg gtgcgcaagt cttcccacgg gaaatagccg
     4141 tagcagtcct gccatttcgc atcgggatgc aggatgctgt cggctgcctc gcgcaccagc
     4201 cccaaatagc tgacgtacaa gacgggcatg ccgtgttcgt tgcggcggtg ggtatcgaca
     4261 aaggtgtaaa gctgttccac atagcccata ggctgcgaag tctgcttggc aacccacagc
     4321 ttcacgcccg cctgcaggga attgcgcaga ggggagagcg ggccgttggg caggagcgtg
     4381 ccttgggcga cggtcaacac ccgcaggccg ccgtcggtaa cggcaatcaa tacgggaacc
     4441 agctcgacga tgctttgcgg cggggcttcg gcttcggggt aggcatccat gctcggcttt
     4501 ctgcgggtgg aaaaggcttt att
//
LOCUS       DAXIFD010000149         4458 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.149, whole genome shotgun sequence.
ACCESSION   DAXIFD010000149 DAXIFD010000000
VERSION     DAXIFD010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4458
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.149"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(160..696)
                     /locus_tag="ACFOCN_001732"
     CDS             complement(160..696)
                     /locus_tag="ACFOCN_001732"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HFC6970838.1"
                     /translation="MDLREVKLGGETIYEGGFVSISKDKVRLPNGNEGQRIVIRHPGA
                     ACVLAVTDEGKVVLVRQWRYAANQATLELPAGKLDVAGEDMAACALRELAEETPYVAD
                     SVRLLYSFYTAVGFCNEKMYLFEAEGVRLGSTLANDEDEITETVLMSKEEVRQALAND
                     EIKDGKTLIGLQYWLMKD"
     gene            complement(730..1086)
                     /gene="folB"
                     /locus_tag="ACFOCN_001733"
     CDS             complement(730..1086)
                     /gene="folB"
                     /locus_tag="ACFOCN_001733"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HFC6970839.1"
                     /translation="MDKIFLHGMKADTLIGVYGWERERLQTLIVDLDIGVPEKAGSDD
                     DIANTVHYAEVCETLRRHLKEQDFLLLEALAEYIADLVLGYFGAVWVRVKIVKPGILE
                     GVREVGVEIERGKRED"
     gene            1142..1744
                     /gene="plsY"
                     /locus_tag="ACFOCN_001734"
     CDS             1142..1744
                     /gene="plsY"
                     /locus_tag="ACFOCN_001734"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HFC6970840.1"
                     /translation="MFNIPAVAVSYLIGSLSFAVIVSKYYGMDDPRTYGSGNPGATNV
                     LRSGKKKAAVLTLLGDAAKGLVAVLLARVLQEPLGLSDSAIAAVALAALVGHMWPVFF
                     GFKGGKGVATALGVLLALSPATALVCALIWLVMAFGFKVSSLAALTATIAAPLAALFF
                     MPHLSWIWATLLIALLVLFRHKSNISNLLKGKEGKIGEKR"
     gene            1832..2677
                     /locus_tag="ACFOCN_001735"
     CDS             1832..2677
                     /locus_tag="ACFOCN_001735"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008988 - rRNA
                     (adenine-N6-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HFC6970841.1"
                     /translation="MLSYRHAFHAGNHADMLKHFTLFLVLQYFNRKDKPYWYIDTHGG
                     AGVYNLEGSEAQKVGEYRQGIALLRQAKNLPTELNGFIAHIQKILPSPKLYCGSPWLA
                     QSLTRVGDKLRLFELHPTDFVHLQNNMGEAGLGKRGQVLREDGYKELISLLPPPPRRA
                     TVLIDPPYEEKQDYRRVTETLKAALKRFESGCYLIWYPCLSREESRKLPEELKKLLPD
                     NYLHAELHVHAPKADGFGMHGSGMFVINPPYLLAEQLAANLPALTRLLAQDEGARYLL
                     DSKIR"
     gene            2923..3897
                     /locus_tag="ACFOCN_001736"
     CDS             2923..3897
                     /locus_tag="ACFOCN_001736"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HFC6970842.1"
                     /translation="MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGAL
                     AGVLGMAGTGNIQGEDQKKLDVIANNIMIDTLKANPAVAGLASEEEDSFVSAGENGRY
                     LVLFDPLDGSSNIDVNISVGTIFSILEKPEGALATESFLQTGRQQLAAGYVLYGPQTQ
                     LVFTFGHGVYMFTLNAENEFVLTKEKPKVPESTKEFAINMSNRRHWLPPVQQYIDELL
                     AGETGTRGKNYNMRWVASMVAEIHRILMRGGVFMYPQDKRDPSKPGKLRLMYEANPMA
                     LILEQAGASASNARQDILGIRPESLHQRVAVIMGSSEEVDYLNRLHSK"
     gene            complement(4056..4274)
                     /locus_tag="ACFOCN_001737"
     CDS             complement(4056..4274)
                     /locus_tag="ACFOCN_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HFC6970843.1"
                     /translation="MFPEYRDLISKLKQENSRFARLFDEHNELDDKITGLVNNPVTSG
                     AETIDELKKAKLKLKDELYAILQKAAGK"
     gene            complement(4250..>4458)
                     /locus_tag="ACFOCN_001738"
     CDS             complement(4250..>4458)
                     /locus_tag="ACFOCN_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970844.1"
                     /translation="GKAENLCVKRDIVNVFINRTAVLKENFAVSDKTLDKNIIFVIIN
                     VKIQFDFLTVNQERKAICSQNTVI"
BASE COUNT         1104 a         1350 c          968 g         1036 t
ORIGIN      
        1 gatcatgttc gtttgggtaa ttatcatacc cttttccctc ttattactaa agcacgaatg
       61 actttaaagg acgcgcccag agacaagccg aaaaggcata tcccatccgc caaacaaaat
      121 gcccgccgac ttactccggc gggcagctcc aacaccctgt caatccttca tcagccagta
      181 ttgcaaaccg attaatgtct tgccgtcttt aatttcatcg tttgccaatg cctgacggac
      241 ttcctccttc gacatcaata cggtttccgt aatctcgtct tcgtcattgg caagcgtact
      301 gcccaagcgt acgccttccg cctcgaacag atacattttt tcgttgcaaa aaccgaccgc
      361 cgtataaaaa ctgtacaaca ggcgtacact gtcggcaaca taaggcgttt cctccgccaa
      421 ttctcgcagc gcacacgctg ccatatcctc gcccgccaca tccagcttgc ccgcaggaag
      481 ttccaatgtc gcctgatttg ccgcataccg ccactgccgt accaaaacca ctttcccctc
      541 gtccgtaacc gccaacacgc atgccgcacc gggatgacgg atgacgatac gctgcccttc
      601 gttaccgttg ggcaacctga ccttatcctt gctgatgctg acgaaaccgc cctcgtaaat
      661 ggtttcgccg cctaatttta cttccctcaa atccacttca tatctccttt ccgtttccta
      721 ttctgccgtt caatcttcac gcttgccgcg ctcgatttcc acgccaacct cgcgcacgcc
      781 ttccaaaata cccggcttga cgattttcac gcgcacccac accgcgccga aatatcccaa
      841 aaccaaatcg gcaatatatt ccgccaacgc ttccaaaagc aggaaatcct gttctttcag
      901 atgtcggcgc agcgtttcgc atacctcggc ataatgcacc gtattggcaa tatcgtcgtc
      961 cgaacccgct ttctcgggaa cgccgatgtc caaatcgaca atcagggtct gcaaccgttc
     1021 gcgttcccag ccgtacacgc cgataagcgt atctgccttc atgccgtgca aaaagatttt
     1081 atccataatc cgccccgttt tttgctaaaa taaccgcacc attctaagta aagtaccgca
     1141 aatgttcaac ataccggctg ttgctgtttc ctatctgatc ggctcacttt ctttcgccgt
     1201 catcgtgtcc aagtattacg gcatggacga cccgcgcacc tacggatcgg gcaatccggg
     1261 ggcaaccaat gttttacgca gcggcaaaaa aaaggcggcc gtgctgacgc tcttgggcga
     1321 tgccgccaaa ggtttggttg ccgttttgct tgcacgcgtg cttcaagaac cgctcggttt
     1381 atccgacagc gcaatcgctg ccgtcgcact cgccgcgctg gtcgggcata tgtggccggt
     1441 gtttttcgga tttaagggcg gcaaaggcgt ggcaacggca ttgggcgtgc ttttggcact
     1501 ctctcccgca actgccttgg tctgcgcgtt gatttggctt gttatggcat tcggcttcaa
     1561 ggtgtcctcc cttgccgcat taaccgccac aatcgccgcc ccccttgctg cgctgttttt
     1621 tatgccccac ctttcttgga tttgggcgac gctccttatc gccctgctgg tgttgttccg
     1681 ccacaaaagc aatatcagca acctgcttaa aggcaaagaa ggcaaaatcg gcgaaaaacg
     1741 ctgattcggc atttgttttc cattacgtca tgccgtctga aaccatattt ccgcgttcag
     1801 acggcatttc cgcacaaacg gctttcatac catgctcagt tacagacacg cattccacgc
     1861 cggcaaccac gccgatatgc tcaaacactt caccttgttt ttagtgctgc aatatttcaa
     1921 ccgcaaagac aagccctact ggtacatcga cacgcacggc ggcgcgggtg tgtacaatct
     1981 cgaaggcagc gaggcacaaa aagtcggcga ataccggcaa ggcatcgccc tacttcgaca
     2041 agcaaaaaac ctgccaaccg agttaaacgg ctttatcgcg cacatacaaa aaatcctgcc
     2101 ctcgcccaaa ctttactgcg gttctccgtg gctggcgcaa tcgctgaccc gtgtcggcga
     2161 caaattgcgc ctgtttgagc tgcaccccac cgactttgtc catctgcaaa acaatatggg
     2221 cgaagcagga ttgggcaaac gcggacaagt gttgcgcgaa gacggttaca aagagctgat
     2281 ttccctgctg ccgcccccgc cgcgccgcgc caccgtcctc atcgacccgc cctatgagga
     2341 aaaacaggac taccggcgtg taacggaaac gctgaaagcc gctttaaaac ggtttgagtc
     2401 cggctgttat ctcatttggt atccctgcct cagccgcgaa gaaagccgca agctgcccga
     2461 agaattgaaa aaactcctgc ccgacaacta ccttcacgcc gaacttcacg tccacgcgcc
     2521 gaaagccgac ggtttcggta tgcacggcag cggaatgttc gtcatcaatc cgccctatct
     2581 gttggcggaa caattggcgg caaacctccc cgccctgacg cggctgctgg cgcaagacga
     2641 aggcgcgcgc taccttttgg acagcaaaat ccgctgaccc cgatgccgtc tgaaaccctt
     2701 cagacaacat ctcccgtcaa ataaacaaaa ccggacgata taccggcagt cggcactttt
     2761 aagaataaat atcccctcat ccgcctgccg cgttccgact tgccccatgc cgttttttta
     2821 cactacaatc ccctagacta tcctgcaaaa cgcaccaaag gaatacgcca caataacctg
     2881 ccgcctttca gacggcacaa acctttccga aacgagcaaa ctatggacac actgacccga
     2941 ttcctccccg aacacctgca acaaaaccag ctgcccgaag cactcggcgg cgttttactg
     3001 tccgttgttt ccgcctgcac cgaaatcaac gccaaagtcc gcctcggcgc actggccggc
     3061 gtattgggta tggcgggcac gggcaatatt cagggcgaag accaaaaaaa actggatgtt
     3121 atcgccaaca acatcatgat tgacacactc aaagccaacc ctgccgttgc cggtttggca
     3181 agcgaggaag aagactcttt cgtaagtgcc ggtgaaaacg gacgctatct cgtcctattc
     3241 gaccctttag acggatcgtc caatattgat gtcaacattt ccgtcggtac aattttctcc
     3301 atccttgaaa aacccgaagg cgcattggca accgaatcat tccttcaaac gggcagacag
     3361 cagcttgccg ctggttacgt tctttacggg cctcaaaccc agctcgtatt cacattcgga
     3421 cacggcgtat atatgttcac gctcaatgcc gaaaacgaat ttgtgctgac aaaagaaaaa
     3481 ccgaaagtac ccgaaagtac caaagaattt gccatcaata tgtccaaccg ccgccactgg
     3541 ctgccccccg tccaacaata catcgacgag ctcttggcgg gcgaaaccgg cacgcgcggc
     3601 aaaaactaca atatgcgctg ggtagccagc atggttgccg aaatccaccg catactgatg
     3661 cgcgggggcg tgttcatgta tccgcaagac aaacgcgacc cgtccaaacc cggcaaactg
     3721 cgcctgatgt atgaagccaa tcctatggcc ctgatactcg aacaagccgg cgcatcggca
     3781 agcaacgccc gtcaggacat actcggcatc cgtcccgaaa gcctgcacca gcgcgtcgcc
     3841 gtcattatgg gcagcagcga agaagtggat tacctcaacc gcctgcattc aaaataaaag
     3901 gcagcctgac cgataaagaa aggcggcagc gcgcatccga cgctgccgcc gatatttcgt
     3961 ttatagcctt aaaaagatag aaaaccacct ttccgaacgg caaaaatgcc gtctgaaaag
     4021 ttttcagacg gcattttaaa aattaaagcc cgaatttatt tgcccgctgc tttttgcagg
     4081 atggcgtaca actcgtcttt cagtttcaat ttggcttttt tcagctcatc gatggtttcc
     4141 gcaccgctgg taaccggatt gttgaccaga ccggtaattt tatcgtccag ctcgttgtgt
     4201 tcgtcgaaca gacgggcgaa gcgggaattt tcctgtttca atttggaaat caaatcacgg
     4261 tattctggga acatatcgct ttcctctctt ggtttacggt taaaaagtca aactgaatct
     4321 ttacattaat tataacaaag ataatatttt tatccagtgt tttatcggat acggcaaaat
     4381 tttcttttaa caccgccgtc cggttgataa aaacgttgac aatatcacgc tttacgcata
     4441 aattttcagc ctttccta
//
LOCUS       DAXIFD010000150         4431 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.150, whole genome shotgun sequence.
ACCESSION   DAXIFD010000150 DAXIFD010000000
VERSION     DAXIFD010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.150"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(51..770)
                     /gene="pyrH"
                     /locus_tag="ACFOCN_001739"
     CDS             complement(51..770)
                     /gene="pyrH"
                     /locus_tag="ACFOCN_001739"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HFC6970845.1"
                     /translation="MTQQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVK
                     MGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARV
                     QSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVML
                     KATNVDGVYTADPKKDSSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGI
                     AKEGSLKRVVTGENEGTLVHC"
     gene            complement(987..1841)
                     /gene="tsf"
                     /locus_tag="ACFOCN_001740"
     CDS             complement(987..1841)
                     /gene="tsf"
                     /locus_tag="ACFOCN_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HFC6970846.1"
                     /translation="MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIK
                     SGAKAGKLAGRTAAEGVLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAE
                     KKPASVEELSELVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVE
                     YKGSEDVARKIGMHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMV
                     EGRIRKFLAEITLNGQAFVMNPDQTVAQFAKENGTEVVSFVRYKVGDGIEKAVVDYAA
                     EVAAAAKV"
     gene            complement(1970..2698)
                     /gene="rpsB"
                     /locus_tag="ACFOCN_001741"
     CDS             complement(1970..2698)
                     /gene="rpsB"
                     /locus_tag="ACFOCN_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HFC6970847.1"
                     /translation="MSQITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLE
                     KTLPMFQDAQEAVRRLVANKGTVLFVGTKRQARDIIREEATRAGMPFVDHRWLGGMLT
                     NYKTVKQSIKRLEEKTAALENAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDA
                     IFVIDTGYQKGTLVEAEKLGIPVIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIA
                     DAVLEGKNQALQETVAAAQEAAAE"
     gene            complement(2899..3108)
                     /locus_tag="ACFOCN_001742"
     CDS             complement(2899..3108)
                     /locus_tag="ACFOCN_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970848.1"
                     /translation="MWHIVAIGYLFVAVMFSAAQPSIARTLIYLVFWAVLPTVFTVFV
                     VTIRRRNRLMKQQEQAEFEQQRAQR"
     gene            3186..3767
                     /locus_tag="ACFOCN_001743"
     CDS             3186..3767
                     /locus_tag="ACFOCN_001743"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFC6970849.1"
                     /translation="MRNEEKHALRRELRGRRSQMGWDVRAAATVKINRLLKRYIKHGR
                     KIGVYWPMGKELRLDGFVRAAQKRGAKLYLPYIEPRSRRMWFTPYPESGMERERIRGR
                     ARLNVPQFAGRKIRVHGLSVLLVPLVGIDREGYRLGQAGGYYDATLAAMKYRLQAKTV
                     GVGFACQLVDRLSVEAHDLPLDGFVSEAGILCF"
     gene            3828..4418
                     /locus_tag="ACFOCN_001744"
     CDS             3828..4418
                     /locus_tag="ACFOCN_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HFC6970850.1"
                     /translation="MSERIILPVLSLGGVRLEPLDVHHEMGLREAVCDGEVWKLGVTS
                     APHPDRVADYIGTALATRLAFAVVDEEAGRVVGTTAYYHFEPQIPRLDIGFTWYAASA
                     RRTRINTCCKIMLLDYAFDVLACRCVGWRTDILNLASQRAIERLGAEKDGVLRMHMLR
                     KDGSVRDTVVYSMLREDWCKNREILTGRLAGYGVQV"
BASE COUNT          951 a         1026 c         1285 g         1169 t
ORIGIN      
        1 atggctgtct gaagcccata tgcgactata tctgccgaca ctatggtcaa tcagcagtga
       61 accagcgtac cttcgttttc accggttact acacgtttga gcgagccttc tttagcaatg
      121 ccgaatacga caatattgag cttgcgttcg cggcagaggg cgaaagcggt ggcatccatc
      181 actttgaggt ttttcaacaa ggcttcgtca aaagtaatgg tttcgtagcg cgtggcggat
      241 gagtcttttt tggggtctgc ggtgtacacg ccgtcaacgt tggtggcttt gagcatcacg
      301 tcgcagttca tttccgcacc gcgcaatgcg gcggcagtgt cggtcgtgaa gaacgggtta
      361 ccggtaccgg cggcaaaaat cacgactttg ccttcttcca aatattggat ggctttgggg
      421 cgggcgtagg tttcagcgat ttgctgcata gacagtgcgg attgtacgcg cgctttgatg
      481 cctaaagttt caaatgcgtc tttgagtgcc aacgcgttca tcacggtcgc catcatgccc
      541 atgtagtcgg cggtggcgcg atccatgctg cctgcttggg cggatacgcc ccggaaaata
      601 ttgccgccgc cgacaacaat accgacttgc acgcccattt taacgacttc ggcaatttcg
      661 ccgacagttt gaacgatggt atcgtgattg atgccgaacg gatcggaacc catcagggat
      721 tcgccggaga gtttcagtaa tacgcgtttg tatttgattt gctgtgtcat ggataccttg
      781 ctttcttgaa tgtcgtcggt cggagttggg tcgtctgaat ttcaaacggt cggaatatta
      841 atgatagggt gtgtcggttt attattgttt tgttttaaga cggtctgaat attcggtcgt
      901 cttaaaatag gtaccgcaaa cggttttctc aaaaaaaagc accctgattc gtttggaatc
      961 caggtgcttt ctttttcata agtgccttac actttggcgg ctgcggctac ttcggctgcg
     1021 tagtcgacaa cggctttctc gataccgtcg cctactttgt agcggacgaa gctgaccact
     1081 tcagtgccgt tttctttggc gaattgggca acagtttgat cggggttcat cacgaatgct
     1141 tggccgttca gagtgatttc agccaagaat ttgcgaatac ggccttcaac cattttagcg
     1201 gcgatgtcgg caggtttgcc ggaagcgatg gcttgttcgg tgtagatgtg gcgttctttt
     1261 tcaacggttt cggcatctac ttcggcttcg cttacgcatt gtggtttagc ggcaacaatg
     1321 tgcataccga ttttgcgtgc tacgtcttca gagcctttgt actcaaccaa tacgccttcg
     1381 gtcgccaatg cgccgtggat gtaggcaacc agttggttgg cagtgtcgat cacttggaag
     1441 cgacggacag acatgttctc gcccaatttg gcgatgatgg ctttgcgttc tgcttcaacc
     1501 agttcgctca gttcttcaac agaagccggt tttttctcgg cggcagtttt cgcaacgaag
     1561 ttggcaaatt ctacgaagcc cgcgtcttta gcaacgaagt cggtttcgca gtttacttcg
     1621 accaatgcgc cgacattgcc gttgatcgcg taagccaata cgccttcggc agcagtacgg
     1681 ccagccagtt taccggcttt cgcaccagat ttaatacgca ggatttcttc ggctttgtcg
     1741 aagttgcctt cggcttcaac caaggctttt ttgcattcca tcatgcccag gccggtagca
     1801 gcgcgcaggt cggcaaccat ttttgcagta atttctgcca ttttgaatct cctagatttt
     1861 tgggaaatac ggaaaggatt ttccgcattc gggaatcgtg tgccgcgaac ggacgttcag
     1921 acggcatatt tgagaaaagg ggcataacgc ccctcttcgg tttgccggat tactcggcag
     1981 cggcttcttg ggcagcggct acggtttctt gcagcgcttg gtttttgcct tccaaaactg
     2041 cgtcagcgat gccgcggcag tacaggcgga tggctttggc ggagtcgtcg ttgccgggga
     2101 tgacgtattt cacgccgtca gggctgttgt tggtatcgac tacggcgata acggggatgc
     2161 ccagtttttc agcctcgacc agagtacctt tttggtagcc ggtatcgata acgaaaatcg
     2221 cgtcgggcag gcctttcatg tttttgatac cgcccaaaga acgttccagt ttttcaacat
     2281 cgcgttgcat ttccagaatt tcttttttgc tgaaaccgct ttcggcagca ttttccaagg
     2341 ctgcggtttt ttcttccagg cgtttgatgg attgcttaac ggttttgtag ttggtcagca
     2401 taccgcccaa ccaacggtga tcgacgaaag gcatgccggc gcgggtcgct tcttcgcgga
     2461 tgatgtcgcg ggcttggcgt ttggtaccta cgaacaatac tgtacctttg ttggcaacca
     2521 gacgacgtac ggcttcttgc gcgtcttgga acatcggcag ggttttttcc aggttgacga
     2581 tatggatttt gttgcgcgca ccgaaaatgt attgagccat tttcgggttc cagaaacggg
     2641 tttggtggcc gaagtggaca ccggcttcaa tcatctgacg catagtaatt tgagacattt
     2701 tgatttcctt gaaagggtta agggcacaca ttcaatcgca tagaacttga tagaccgcgc
     2761 ctattgtcaa gcacccttcg gcgaaagtgg gcataagttt taaaaaataa aagagtgttt
     2821 ccgaaatgga aaactgacgg attatagcgg ataagaggtc gtctgaaaag ggattcaggg
     2881 ttttgtgccg ctgtcttttt accgttgtgc acgctgctgt tcgaattctg cctgttcctg
     2941 ttgcttcatc aggcggttgc ggcggcggat ggtcacgaca aagaccgtga acacggtggg
     3001 cagcaccgcc caaaaaacca aataaatcaa ggtgcgcgca atactcggct gcgcggcgga
     3061 aaacatcacg gcaacaaaaa gatagccgat ggcgacaatg tgccacattg tgtgcgtcct
     3121 gtttgaatgt taacaaaatc gttataatcg caacattcta ccgcaatcct gaaaggccgt
     3181 ctgaaatgag gaacgaggaa aaacacgccc tgcgccgcga attacgcggg cggcgttcgc
     3241 aaatggggtg ggacgtgcgg gcggcggcaa cggtaaaaat taaccgcctg ctcaaacgtt
     3301 atatcaagca cggtcggaaa atcggcgtgt attggccgat gggcaaggaa ttgcgtttgg
     3361 acggctttgt ccgcgcggcg caaaaacgcg gcgcaaaact ttatctgcct tatatcgaac
     3421 cgcgttcgcg gcggatgtgg tttacgccgt atcctgaaag cggaatggaa cgggagcgca
     3481 tacggggcag ggcgaggttg aacgtgccgc agtttgcagg gcgcaaaatc cgcgtgcacg
     3541 gtttgtcggt attgctcgtt ccgcttgtcg gcatagaccg cgaaggctac cgtttggggc
     3601 aggcaggcgg ctattacgat gcgacgcttg cagcgatgaa ataccgtttg caggcaaaaa
     3661 ccgtgggcgt gggctttgcc tgccagttgg tggacagact gtcggtcgag gcgcacgacc
     3721 tgccgctgga cggttttgtg tcggaggcgg ggatattgtg tttttagccg ttcagacggc
     3781 attttgaacg gaaatgccgt ctgaaggcgg aatattggga gaaaaggatg tcggaaagga
     3841 taatactgcc ggtcttgtcg ttgggcggcg ttcgtctcga accgttggat gtgcatcatg
     3901 aaatgggttt gcgcgaggcg gtttgcgatg gggaagtttg gaagctggga gtaacgtccg
     3961 cgccccatcc ggatagggtg gcagactata tcgggacagc attggcaacg cgtttggcgt
     4021 ttgcggttgt cgatgaagag gcgggcaggg tggtcgggac aacggcgtat tatcattttg
     4081 aaccgcagat tccgcgtttg gatatcggat tcacatggta tgcggcatcg gcacggcgga
     4141 cacggataaa cacctgttgc aaaatcatgc tgttggatta cgcatttgat gttttggctt
     4201 gccgttgcgt gggatggcgc acggatattc tgaaccttgc ctcgcaacgt gccatcgaac
     4261 ggctgggtgc ggaaaaagac ggcgtgctgc gtatgcatat gctccgtaaa gacggcagtg
     4321 tgcgcgatac ggtcgtgtac agtatgctga gggaagattg gtgcaaaaac agggaaatcc
     4381 tgaccggcag gttggcaggg tatggcgtgc aggtgtgagg cagtattttc a
//
LOCUS       DAXIFD010000151         4354 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.151, whole genome shotgun sequence.
ACCESSION   DAXIFD010000151 DAXIFD010000000
VERSION     DAXIFD010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.151"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            214..696
                     /locus_tag="ACFOCN_001745"
     CDS             214..696
                     /locus_tag="ACFOCN_001745"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6970851.1"
                     /translation="MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLV
                     EEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGD
                     VVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
                     "
     gene            783..1595
                     /gene="hpnC"
                     /locus_tag="ACFOCN_001746"
     CDS             783..1595
                     /gene="hpnC"
                     /locus_tag="ACFOCN_001746"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HFC6970852.1"
                     /translation="MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMP
                     SEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDV
                     VKTRYAHFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
                     VDWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARE
                     LKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKRALWK"
     gene            complement(1666..2136)
                     /locus_tag="ACFOCN_001747"
     CDS             complement(1666..2136)
                     /locus_tag="ACFOCN_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HFC6970853.1"
                     /translation="MYDVNTHDVRRFFARVWQQRLNPLQLSALEQKALRIIEAHPEYH
                     RYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGW
                     LEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAEDQARLNPHKIA"
     gene            2227..4068
                     /locus_tag="ACFOCN_001748"
     CDS             2227..4068
                     /locus_tag="ACFOCN_001748"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HFC6970854.1"
                     /translation="MQTNYLSETDSIMKKLICLFAVFLMLCGRAFALDANDLLPPEKA
                     FVPELAVADDGVNVRFRIADGYYMYQAKIVGKTNPADLLGQPSFSKGEEKEDEFFGRQ
                     TVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEVGVCYPPVDTEFDISGNGTYHPQTDE
                     PASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTA
                     CMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQ
                     QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSA
                     LIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPKAGD
                     WMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKA
                     VAFALGGILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKA
                     AMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANKP
                     EHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR"
BASE COUNT          923 a          986 c         1315 g         1130 t
ORIGIN      
        1 ttgtatgatt tattaaggcg gattgggaaa gtcggcagac aggtcggaat ggttttaaga
       61 atgttgtaaa aaagttacac cgcaataaaa taacaaaaat ttacattgaa atatgtgctg
      121 tacagtttat gaacaggtta acggtaatcg gccggcgcgg cggttgtgtt agaatgcgcc
      181 tgtaatcaat ctgctgttcc tgaaaggaca aatatggcta tcgtgaaaaa ttccgtggtt
      241 tcgctgcatt atgagatgta tgatgccaac aatcagcttt tggacaaaac cgaagaaccg
      301 attgcgtatc tgcacggcgg ttacgacggc attttccctt tggtggaaga ggcgttgcac
      361 ggtaaggatg ccggcgatac ggtcgatgtg gcgctgtcgc ccgacgatgc gttcggcgag
      421 caggatccgg agttggtccg tattgaagat gcgggcgtgt tccctgttga agtcgaagtc
      481 ggcatgatgt ttgaagccga cgatcctgaa accggcgatg ttgtcgtcta tcgtgtaacc
      541 gatgttgccg acggcaaggc ggtggtggac ggcaaccatc ctttggcagg catgaaaatc
      601 cgctttaagg ctacggttga aagcgtgcgc gatgcatccg atgaggaaat cgcacacggt
      661 catgtccacg gcccgcacgg tcatcaccac cactgattgc cggcagcttg gaggtatctg
      721 atgccgtctg aaaagggttt gttccgtttc agacggcatt ttgtttgatg gatggagaag
      781 gtatgtcggt tgggcattat gagaattttc ccgtcggttc gctgattttg ccgcgcaggt
      841 tgaggaagcc ggttcacgcg gtgtacgcgt ttgcacggac ggcggacgat atggcggacg
      901 agggcagtat gccgtctgaa gccaggttgg cggggttgga gggtttgcag cgcgagttgg
      961 acgtgttggc atcgggcggc cggtcggcgc atcctttgat tgcacgattg gatgccgagg
     1021 cggttgtgcc gttcggtttg gatttgcagc cgttttatga tttgctttct gcattttctc
     1081 aggatgtggt taaaacgcgg tacgcgcatt tcggcgagct ggccgattat tgtcggcgtt
     1141 ccgccaaccc tgtcggacgc attatgctgg ctttgtacgg gaaaacggat gcggtgtgcg
     1201 tggcgcaaag cgacggtatc tgtacggctt tgcaactggt gaatttttgg caggatgtgg
     1261 ctgtggattg gcaaaagggc agggtttata tcccgcagga cgatttgttg aaattcggtg
     1321 tttccgaagg acagattgcg gagggtaggg cggatgcggc gtttcagcgg ctgatggcgt
     1381 atgagtgccg gcgcgcattc cgtatgctga aggcgggttc gcctttggcg cgcgaattga
     1441 aagggcgtat cggtttggaa ctccgtatga ttgtgttggg ggcgcagttg attttgcaga
     1501 aactggacgc gtgccgatac gatgtgtttg cacaacgtcc ggttttggat aagaaggatt
     1561 ggttgattat gttgaaacgc gcgttgtgga aatgatgggg gaaatgaatg ccgtctgaaa
     1621 ggggttgttc cgcttcagac ggcattttgc aggcggttgg tatggtcagg cgattttatg
     1681 cgggttcaac ctggcttgat cttctgcacc caagccgatg agtttgcgca gtcgggtcat
     1741 gtagaaattg acatccaaac cggtgccgta gcgttgcgcc gtccacagtg tttccgccag
     1801 tgcctccatc atttcgtgtt cggcttccag ccagccgcgt ttggcgcaca gggtgtcgtg
     1861 gattgcgcgt atgccgtgcg gctggtctat gcccgcctgt tcttggacgg acaaatgcag
     1921 cgacatatgc aggaaggggt tgctttcgcc gttttcgggc agccagtcgg tgtccagatg
     1981 gtcttcgatg cgttcgagat aacggtggta ttcgggatgg gcttcgataa tgcggagggc
     2041 tttctgttcc agtgcgctca gttgcagcgg attgagccgc tgctgccaca cgcgggcgaa
     2101 aaagcggcgg acatcgtggg tattgacatc gtacatggcg ggttcggtaa gatgtttatg
     2161 gaaataggtt cggataatgg cgggttttac ataaattaaa tcccaccgtc aaccttacca
     2221 tttataatgc agacaaatta tttgtctgaa acggattcga ttatgaaaaa actgatttgc
     2281 ctgttcgccg tatttttgat gttgtgcgga cgagctttcg cgctggatgc gaacgatctg
     2341 ctgccgccgg aaaaggcatt cgtgccggag cttgccgttg ccgacgacgg tgtgaacgtc
     2401 cgtttcagga ttgccgacgg atactatatg tatcaggcga aaatcgtcgg caagaccaat
     2461 ccggcggatt tgttgggaca gccttctttc agcaagggcg aagagaagga agacgagttt
     2521 ttcggcaggc agacggttta ccatcacgaa gcgcaggttg cctttcctta tgcaaaggct
     2581 gtcggcgaac cgtataaatt ggttttgacc tatcagggct gtgccgaagt cggcgtgtgc
     2641 tatccgcccg tggataccga gtttgatatt tccggcaacg gcacttacca tccgcaaacc
     2701 gacgaaccgg catccgccaa agaccgcttt ttgcagcctt cctctcaaaa cggcagcggg
     2761 gcgctgccgc ccccgaaggg ggatgagggc ggcgacagcc gtttcaagct gtcttgggat
     2821 acgctcaacg ccaatctttt ggcgtttttt ctcgccggtt tgggtctgag ttttaccgcc
     2881 tgtatgtatc ccctgttgcc gattgtttcc agtattgtgg tcggcgacaa aaaggcgggc
     2941 aaggcgcggg cgtttgtgct gtccgtcgtt tatgttcagg gtttggctct gacttatacg
     3001 ctggtcggca ttgttgccgg actgacgggc gcgctgctga ccgtatggtt gcagcaggct
     3061 tgggtcgtgt tggcggcatc ggctttgatg gtcgtcttgg cactgtctat gttcgggctg
     3121 ttcaacatcc agcttcccaa cgccgtgcag tcgtattttc agaatcaaag cagcaggctt
     3181 tcaggcggta aaatcgtttc cgtctttatt atgggcatat tgtccgcgct gattgtcggg
     3241 ccgtgcgtcg ccccgccgct ggcatttgct ttgggctaca tcggtcagac gggcgatgcg
     3301 gttttaggcg gtttggcact ttacactttg gcgttgggca ccggcgttcc gctgattgcc
     3361 atcggcacgt tcggcgggca tatcctgcct aaggcaggcg attggatgaa tgccgtcaaa
     3421 tacgctttcg gctttatcct gcttgccgtc gccgtttacc tcgccacgcc gcacttgccc
     3481 tattatctcg tcgtcgcgct gtacacgctg ctgatgctgg ttcctgcctg tatgctgctg
     3541 gtcaacggac gcaggcagaa acgccgtccg aaagctgtgg cattcgcatt gggcggcata
     3601 ttgctgatag gcggcgcgtg gttcggctgg cagggcgcaa acggcaaaac gaccgcgctg
     3661 caccatttcc tgaccctcaa tccgccggcc gaagcaggca aatcttcgga acacggaaaa
     3721 atgtttgccg atactgccgc gctgaaggca gcgatggata cggcgttgaa agaacatccc
     3781 gacaaacccg tcgttttgga tttttatgcc gactggtgca tttcctgcaa agaaatggcg
     3841 gcttacacgc tcaatcagcc ggaagtgcat caggcagtcg atatggaacg ctttttccaa
     3901 atcgacgtaa ccgccaacaa gcccgaacat caggcgttgt tgaaagaata cggtctgttc
     3961 gggccgccgg gcgtgtttgt cgtccgctcc gacggcagcc gcagcgagcc gctgctgggt
     4021 tttgtcaaag cagacaagtt tatcgagtgg tatgaacaaa accgctgatt ccgatgtttc
     4081 aaatgccgtc tgaagttctc agacggcatt tttgtcagaa aggaaaacgg caatatccac
     4141 tatacacacg gaagcagtct aaagatgtga aaaccgtgtg tataagttag tttgcgtatt
     4201 gaaattaaaa gataaaaata cgatgattaa aaaataggca taagaaaaga taaacacagc
     4261 cggtgtttgc cggtgtgtgt atcttttgtg gaaaaacatc ttaatgtcat gtattttatg
     4321 gaaaataata acatgattaa aaaatagtca atca
//
LOCUS       DAXIFD010000152         4265 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.152, whole genome shotgun sequence.
ACCESSION   DAXIFD010000152 DAXIFD010000000
VERSION     DAXIFD010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4265
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.152"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(138..1184)
                     /gene="recA"
                     /locus_tag="ACFOCN_001749"
     CDS             complement(138..1184)
                     /gene="recA"
                     /locus_tag="ACFOCN_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HFC6970855.1"
                     /translation="MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGS
                     LGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPV
                     YARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
                     DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFY
                     SSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELID
                     IGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIRALNGIEMHIT
                     EGTQDETDGERPEE"
     gene            1438..2202
                     /gene="aroD"
                     /locus_tag="ACFOCN_001750"
     CDS             1438..2202
                     /gene="aroD"
                     /locus_tag="ACFOCN_001750"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HFC6970856.1"
                     /translation="MCSCLVVKNTVIGSGRTKIAVPLVARDAAELSAVLEQIKNMPFD
                     IAEFRADFLECAGSIGEILHHTQTVRDALPDKPLLFTFRRHGEGGSFPCSDDYYFKLL
                     DALIESRLPDIIDIELFSGETAVRRAVANAQKNGIAALLCNHEFHRTPPQEEIVCRLK
                     QMEDCGADICKIAVMPQSAEDVLTLLSATLKAKELAAKPIVTMSMGQTGAVSRLAGQV
                     FGSSITFGSGTQNSAPGQIGVSALRATLDCLENGAD"
     gene            2222..4237
                     /gene="rep"
                     /locus_tag="ACFOCN_001751"
     CDS             2222..4237
                     /gene="rep"
                     /locus_tag="ACFOCN_001751"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HFC6970857.1"
                     /translation="MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNV
                     GYLPHTVAAITFTNKAAAEMQERVAKMLHKSQTRGLTICTFHSLGMKILREEANHIGY
                     KKNFSILDSTDSAKIIGELLGGTGKEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQ
                     QTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTN
                     TCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYR
                     STARILKIANKVIENNPKLFTKKLWSKLGEGEPVKVVACQNEQHEADWVVSQIVKQKL
                     IGGDKTQYADFAVLYRGKHQARIFEEALRGARIPYRLSGGQSFFDKAEIKDVLSYVRL
                     LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNR
                     QHLQAFMDMFGSYRAKAETGEAGEFINSLLEEIDYENHLMQNEEGKAGEIKWRNVSDL
                     VSWFARKGGEDGKNIIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLV
                     GCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSRF
                     IDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDSMKKGNPSD"
BASE COUNT         1011 a         1163 c         1160 g          931 t
ORIGIN      
        1 tgtactgtct gcggcttcgt cgccttgtcc tgatttttgt taatccacta taccaaaact
       61 caaatcaagc cgttcggagg ctgctcaaaa aaaacggtac ttcgcaacag aagtaccgtt
      121 tatcgggatt tcaggtttta ttcttcgggg cgttcgccgt cggtttcgtc ctgcgtccct
      181 tcggtgatgt gcatttctat gccgttgagg gcgcggattt ttgcgtcgat ttcgtcggca
      241 atttcgggat tttccttcag ccagacgcgg acgttgtctt tgccctgacc gattttcgcg
      301 ccgttgtagc tgtaccacgc gccggatttg ttgatgatgt cgtttttcac gccgatgtcg
      361 atcaattcgc cttcccaact gatgccttct ccgtagagga tgtcaaactc tgcctgacgg
      421 aacggcggcg cgactttgtt tttgatgact ttgacgcggg tttcgttgcc caatacttct
      481 tcaccttttt tgatggatcc ggtgcggcgg atgtcgaggc ggacggaaga atagaatttc
      541 agcgcgttgc cgccggtcgt ggtctcgggg ctgccgaaca ttacgccgat cttcatccgg
      601 atttggttga tgaacacaac cagcgtgttg gtttttttga tgtgtccggt cagtttgcgc
      661 aaagcctggc tcatcaggcg cgcctgcagt ccgacatggc tgtcccccat atcgccttcg
      721 atttcggctt tggggacgag tgcggctacg gaatcgacga ctaccatatc tatgccgccc
      781 gaacggacga gtgtgtcgca gatttccaaa gcctgttcgc cggtatcggg ctgggacagg
      841 taaagctctt cgacttttac gccgagtttg cgggcgtaaa cgggatcgaa ggcgtgttcg
      901 gcatcgacaa aggcgcacac gccgccgttt ttctggcatt gggcgacggc ttcgaggcag
      961 agggtggttt tgccggagga ttctgggccg aagatttcga cgatgcgccc gcgcggcaga
     1021 ccgccgactc cgagggcgag gtctaatccg agcgatccgg tggaaatgac ttcgaggttt
     1081 tcttcctgct ggctgccgtc cattttcatg atggcgcctt tgccgaaact tttttcgatt
     1141 tgcgccagtg cggcggcaag tgctttgctt ttgtcgtctg acattggggt tactccggaa
     1201 caaatgcggt atgtgggatg cggcgcaaca cgggctgcgg cgcgggatgt gtatcgtttt
     1261 cccgatgtgc gggctatcgg taatgctgct tcacgaggtt gccattatcg catatttcct
     1321 tgcttgccga tatgcgccag gacgcggcgg cttgtgccgg aatggaatct ggatgccgtc
     1381 taaaaggcgg ccggctttgt tataatggcg gctgtttttt ctgtgtgtgc ctgttttatg
     1441 tgttcctgcc ttgttgtcaa aaataccgtt atcggaagcg gacgcaccaa aatcgccgtg
     1501 ccgcttgtcg cccgcgatgc cgccgaactt tccgccgtac ttgagcaaat caaaaatatg
     1561 cccttcgata ttgcggagtt ccgcgccgac tttttggaat gcgcgggcag tatcggcgaa
     1621 atattgcacc acacgcagac cgtccgcgac gcgctgcccg acaagccgct gctgtttacg
     1681 ttcagacggc atggcgaagg cggctcgttc ccgtgttcgg acgattatta ttttaaactg
     1741 ctcgacgcgc tgatcgaaag tcgcctgccc gacattatcg atatcgagct gttttccggc
     1801 gaaaccgccg tccggcgcgc tgtggcgaat gctcaaaaaa acggcatcgc cgccctgctc
     1861 tgcaatcatg agtttcaccg cacgccgccg caagaagaaa tcgtatgccg tctgaaacag
     1921 atggaggact gcggcgcgga catctgcaaa attgcggtga tgccgcaaag cgcggaagat
     1981 gtgctgactt tgctttccgc cacgctcaaa gcgaaagagc ttgccgccaa accgattgtt
     2041 acgatgtcga tggggcagac gggggcggtc agccggcttg ccggacaggt gttcggctca
     2101 agcatcacgt tcggttcggg aacgcaaaac tccgcgccgg ggcaaatcgg cgtatccgcc
     2161 ctccgtgcga cactcgactg cctcgaaaac ggcgcagact gatttcagac agcatcaaaa
     2221 catgatgaaa ctcaatcccc aacagctcga agccgtccgc tacctcggcg gcccactgct
     2281 cgtccttgcc ggtgcaggca gcggcaaaac cggcgtgatt actcaaaaaa tcaagtattt
     2341 gattgtcaat gtcggctatc tgccgcatac cgttgccgcg attaccttta ccaataaagc
     2401 cgccgcggaa atgcaggagc gcgtcgccaa aatgctgcac aaatcgcaaa cgcgcgggct
     2461 gacgatttgc acgttccact ctttgggcat gaagattctg cgcgaagagg cgaaccatat
     2521 cggttacaaa aaaaacttct ccattctcga ttctaccgac agcgcgaaaa tcatcggcga
     2581 actcttaggc ggtacgggca aagaagccgt attcaaggcg cagcaccaga tttccttgtg
     2641 gaaaaacgat ttaaaaacgc ctgaagatgt cgttcagacg gcatcgaaca tttgggaaca
     2701 acaaaccgca cgcgtgtatg cgagctatca ggaaacctta caaagctatc aggcagtgga
     2761 cttcgacgac ttgatccgcc tgcctgccgt gctgttgcag caaaacagcg aagtgcgcaa
     2821 caaatggcag cggcggctgc gttatctgct ggttgacgaa tgccaagata cgaatacctg
     2881 ccaatttacg ttgatgaaac ttctgaccgg cgcagaaggt atgtttaccg ccgtcggcga
     2941 cgacgaccag tccatctacg catggcgcgg cgcgaacatg gaaaacctgc gcaaaatgca
     3001 ggaaaactat ccgcagatga aggtcatcaa actggagcaa aactaccgct ccaccgcgcg
     3061 gattctcaaa atcgccaaca aagtcatcga gaacaacccc aagctgttca ccaaaaaact
     3121 ttggtcgaaa ttgggcgaag gcgagcccgt caaagtcgtt gcctgccaaa acgagcagca
     3181 cgaagccgac tgggtcgtca gccaaatcgt caaacaaaaa ctcatcggcg gcgacaaaac
     3241 ccaatatgcc gatttcgccg tgttgtaccg cggaaagcat caggcgagga ttttcgagga
     3301 agcattgcgc ggcgcgcgca tcccctaccg tctctccggc ggacaaagct ttttcgacaa
     3361 agccgaaatc aaagacgtgt tgtcttatgt gcggctgctt gccaacccca atgacgatcc
     3421 cgcctttctg cgtgccgtta ccacgcccaa acgcggcatc ggcgatgtca cgctgggcaa
     3481 gctcaacact tacgcgcacg aacacgaatg cagcctgtat gaagccgcac aaaacgaaga
     3541 agcccttgcc acgctgaaca ataccaaccg ccaacacctg caagccttta tggatatgtt
     3601 cggcagctac cgcgccaaag cggaaaccgg cgaagcaggc gagttcatca acagcctgct
     3661 cgaagaaatc gactatgaaa accatttgat gcaaaacgaa gaaggcaagg ccggcgaaat
     3721 caaatggcgc aatgtcagcg atttggtatc atggtttgcg cgaaaaggcg gggaagacgg
     3781 caaaaacatc atcgaactcg cccaaaccgt cgccttgatg acgcttttgg aaggaaaaga
     3841 cgaagaagaa accgatgccg tctcgctatc cacgctacac gccgccaaag gtttggagta
     3901 tccgtatgtt ttccttgtcg gttgcgaaga aggcgttttg ccgcacaacg acagtatcga
     3961 agagggcaac gtcgaagaag aacgccgcct gatgtacgtc ggcatcaccc gcgccaaacg
     4021 ccaactcacg ctgacccact gcgtcaaacg caaaaaacaa ggcacatggc agttccccga
     4081 acccagccga ttcatagacg aaatgccgca ggaagatttg aaaatcctgg ggcgcaaagg
     4141 cggcgagccg attgtcagca aggaagaagg cagacgcaac cttgccgata taatcggaag
     4201 gctcgacagc atgaaaaaag gcaatccgtc ggattaaacc aagataggga aacgaagccg
     4261 gagac
//
LOCUS       DAXIFD010000153         4252 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.153, whole genome shotgun sequence.
ACCESSION   DAXIFD010000153 DAXIFD010000000
VERSION     DAXIFD010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4252
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.153"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..296)
                     /locus_tag="ACFOCN_001752"
     CDS             complement(<1..296)
                     /locus_tag="ACFOCN_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970858.1"
                     /translation="MSSNYFFSAIDESLITSNNSLSMFLNNLKNYSLDQKNHIFVIQA
                     PLANNKYIYTYKDVVIVLIAKKKIAFINFGDTDSFETFREDFIEDLNAISDKYE"
     gene            complement(311..3157)
                     /gene="uvrA"
                     /locus_tag="ACFOCN_001753"
     CDS             complement(311..3157)
                     /gene="uvrA"
                     /locus_tag="ACFOCN_001753"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HFC6970859.1"
                     /translation="MCNHHPQHSHDNDTIRIRGARTHNLKNVDLDIPRHKLVVVTGLS
                     GSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTS
                     HNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHKLPLSSQTVSQMVDAVLKLPEDTRVM
                     ILAPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRV
                     KVKADIKQRLAESFETALRHGNERALAMEMESGEEHWFSARFACPVCSYSLPELEPRL
                     FSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLATGAIDGWDKRNQFYFQMIQSLA
                     RHYGFDVQAAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLER
                     RYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVSGEPLHEVSAWPLTKTHQ
                     FFETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLAS
                     QIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAIREADFV
                     VDMGPGAGEHGGNVLIADTPENVAQCENSVTGQYLSGKKSIAVPSERTPVNPDRMLVL
                     KGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYD
                     DIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGIPLSRERGYNVGRFS
                     FNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLD
                     MTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRD
                     TGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIKTADYIVDLGP
                     EGGDGGGRIIASGSPEEVAKVKGSYTGKYLKVVL"
     gene            3312..4109
                     /locus_tag="ACFOCN_001754"
     CDS             3312..4109
                     /locus_tag="ACFOCN_001754"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFC6970860.1"
                     /translation="MNRLYPHPIIAREGWPIIGGGLALSLLVSMCCGWWSLPFWVFTV
                     FALQFFRDPAREIPQNPEAVLSPVDGRIVVVERARDPYRDVDALKISIFMNVFNVHSQ
                     KSPADCTVTKVVYNKGKFVNADLDKASTENERNAVLATTASGREITFVQVAGLVARRI
                     LCYTQAGAKLSRGERYGFIRFGSRVDMYLPVDAQAQVAIGDKVTGVSTVLARLPLTAP
                     QIESEPESEPALQTAPVETAANPSAEQRQIEAAAAKIQAAVQDVLKD"
BASE COUNT          905 a         1007 c         1232 g         1108 t
ORIGIN      
        1 tattcatatt tatcagagat agcatttaaa tcttcaataa aatcctctct aaatgtttca
       61 aaagaatctg tatctccaaa attaatgaag gctatttttt tctttgcaat taatacaata
      121 actacatctt tatatgtata tatatatttg ttatttgcaa gaggagcttg aatcacaaat
      181 atatgatttt tctgatctaa tgaataattc ttcaaattat taagaaacat tgataatgaa
      241 ttattcgatg taattaaact ttcatcaata gcactaaaaa aataatttga actcatttta
      301 aatctcctaa ttacaaaacc actttcaaat acttcccagt ataactcccc ttaaccttcg
      361 ccacttcctc agggctacct gaagcaataa tccttccccc accgtcgccg ccttccggcc
      421 ccaaatccac aatataatca gccgttttta taacgtcaag attatgctcg ataatcacaa
      481 ttgagttgcc tttgcctttc agacggccta tcacttccag cagcagggcg atgtcggcga
      541 agtgtaggcc ggtggtgggt tcgtcgagga tgtagagcgt tctgccggtg tcgcgtttgg
      601 agagttccaa ggcgagtttg acgcgctggg cttcgccgcc ggagagggtg gtggcggact
      661 gaccgaggcg gatgtagcct aggcctacgt ccatcagggt ttgcagtttg cgcgatacgg
      721 tggggacggc atcgaaaaat tcgcgggctt cttcgacggt catgtcgagg acttggctga
      781 tgtttttgcc tttgtattgg atttcgaggg tttcgcggtt gtagcgtttg ccgtggcaga
      841 cttcgcaggg gacgtacacg tcgggcagga agtgcatttc gactttaatc acgccgtcgc
      901 cttggcaggc ttcgcagcgg ccgcctttga cgttgaagga aaagcggccg acgttgtagc
      961 cgcgttcgcg cgagaggggg atgccggcga agagttcgcg gatgggggtg aacaggccgg
     1021 tgtaggtggc ggggttggag cgcggggtgc ggccgatggg ggattggtcg acgttgatga
     1081 ctttgtcgag gtgttcgagg ccgcggatgt cgtcgtatgg ggcgggttct tcttgggcgc
     1141 ggttgagttc gcgggcggta attttggcga gggtgtcgtt aatcagggtg gatttgccgc
     1201 tgccggatac gccggtgatg caggtaatca aaccgagcgg cagctcaagg gtaacgtttt
     1261 tgagattgtt gccgcgtgcg cctttgagga cgagcatccg gtcgggattg acgggcgtgc
     1321 gttcagacgg cacggcaatg gattttttgc cgctgaggta ttgtccggta acggagtttt
     1381 cgcattgggc gacgttttcg ggcgtgtcgg caatcagtac gttgccgccg tgttcgcctg
     1441 cgccggggcc catatcgacc acgaaatcgg cttcgcggat ggcgtcttcg tcgtgttcga
     1501 ccacaatcac gctgttgccc aaatcgcgca gtcgtttgag ggtggccagc aggcggtcat
     1561 tgtcacgctg gtgcaggccg atggagggtt cgtccagtac atacatcacg ccggtcaggc
     1621 cgctgccgat ttggctggcg aggcggatgc gctgggcttc gccgccggag agggtttcgg
     1681 cggagcggct taaattcagg taatccagcc cgacgttaat caggaagccg aggcgttcgg
     1741 tgatttcttt gaggattttt tcggcgattt gttttttgtt gccgtctaaa tccagtgttt
     1801 caaagaattg gtgggttttg gtgagcggcc aggcggaaac ttcgtgcagc ggttcgccgc
     1861 tgacgtaaac gtagcgggct tctttgcgca aacgtgcacc accgcagctc gggcaggcgc
     1921 ggtggttctg gtattcgcgc aatttttcgc gcacggtttc gctgtcggtt tcgcggtagc
     1981 ggcgttcgag attgggaatg atgccttcga aggcgtggct gcggttgaag gtggtgccgc
     2041 gttcggatag gtaggtgaaa tcaatgactt ccttgcccga gccgtgcagc acgacttttt
     2101 tgactttttc aggcagcgtt tcccaagcag cctgcacatc gaaaccgtaa tgccgcgcca
     2161 gcgactgaat catttggaaa tagaactggt tgcgcttatc ccagccgtca atcgcgcccg
     2221 ttgccagcga caattcggga tgcgcgacca ctttttcggg atcgaagaag ttggtgttgc
     2281 ccaagccgtc gcaagttggg caggagccca tcgggttgtt gaacgaaaac aggcgcggct
     2341 ctaattcggg caggctgtat gaacatacgg gacaggcgaa acgcgcggaa aaccaatgtt
     2401 cttcgccgct ttccatttcc atcgccagcg cgcgctcgtt gccgtggcgc agtgcggttt
     2461 caaaactttc cgccagccgc tgcttgatgt ccgccttcac tttcacgcgg tcgatgacca
     2521 cgtcgatatt gtgcttgatg tttttctcca gcttcggcac ttcgtcaagc tgataaactt
     2581 cgccgtccac gcgcacacgg gcaaagcctt gcgcctgcaa gtcggcaaag aagtcgacaa
     2641 actcgccctt acgctctcgt accgccggcg ccagaatcat cacgcgcgtg tcttccggca
     2701 gttttaagac ggcatcaacc atttgagata cggtttggct ggatagcggc agcttgtgtt
     2761 cggggcagta gggtgtgccg acgcgtgcgt acaaaaggcg cagatagtcg tggatttccg
     2821 taaccgtgcc gacggtggaa cgcggattgt ggctggtgga tttctgctcg atggaaatcg
     2881 cgggcgacag gccttcgatc aaatcgacat cgggtttgtc catcatctgc aaaaactgcc
     2941 gcgcataggc ggacaggctc tcgacataac gccgctgtcc ttcggcatac agcgtgtcga
     3001 acgccagcga tgatttgccg ctgcctgaca atcctgttac caccaccagc ttgtggcgcg
     3061 gaatgtctaa atcgacgttt ttcaaattat gcgtgcgcgc gccgcgtatg cggatggtgt
     3121 cgttgtcgtg cgaatgttgg ggatgatggt tgcacataat ggatgccgcc tgaaaaataa
     3181 aggaaaaccg atattgtagc actttatcaa ataacgtctt aagcaggatt cagacggcat
     3241 ttgtcggcgg agtacggcag attccgctat aatgtcggca attttaaccc gcttgaacaa
     3301 aaggatgaca aatgaaccgt ctttaccccc acccgattat cgcccgtgag ggctggccga
     3361 ttattggcgg cggtttggct ttgagcctgc tggtgtcgat gtgttgcggc tggtggtctt
     3421 tgccgttttg ggtgtttacc gtatttgccc tgcagttttt ccgcgaccct gcgcgtgaga
     3481 ttccgcaaaa tcctgaagca gtgttgagtc cggttgacgg ccgtatcgtg gtggtcgagc
     3541 gcgcacgcga tccgtatcgt gatgtcgatg ctttgaaaat cagtattttt atgaacgtgt
     3601 tcaacgtgca ttcgcaaaaa tcgcctgccg attgtacggt aacgaaagtg gtctataaca
     3661 aaggcaaatt cgtgaatgcg gatttggaca aagccagcac ggaaaacgaa cgtaatgcgg
     3721 tgttggcgac tacggcttcc ggtcgtgaaa ttacttttgt tcaagtggcc ggtttggtgg
     3781 cgcgccgtat tttgtgctac acccaagcag gtgcgaaact gtcccgcggc gaacgttatg
     3841 gctttatccg cttcggttcg cgcgtggata tgtatctgcc tgtcgatgcg caggcgcaag
     3901 tggcgattgg cgataaagta actggcgtta gcactgtatt ggcgcgtttg ccgctgactg
     3961 cgccgcaaat cgaatccgag cctgagtctg agcctgcttt acaaactgct ccggttgaaa
     4021 cagcggcaaa cccatctgcc gaacaacggc aaatcgaggc agcggcggct aagattcagg
     4081 cggctgtgca agatgtgttg aaagattaat tttgcgaact gaaatagaaa atatcagtac
     4141 catcattcac acgaatgagg aagtttggtt ttttgaattt ttgctaatgt tcacaccgtt
     4201 atgttcacga aaatgggaat ctggaaattt aacgttacgg tgatttatca ga
//
LOCUS       DAXIFD010000154         4200 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.154, whole genome shotgun sequence.
ACCESSION   DAXIFD010000154 DAXIFD010000000
VERSION     DAXIFD010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.154"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..219
                     /locus_tag="ACFOCN_001755"
     CDS             <1..219
                     /locus_tag="ACFOCN_001755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970861.1"
                     /translation="DSPVLKNTWQGVKKGVHSATQNYRRSGAMPSERIFRSVLRLVGV
                     SSETVKRKFAGVELSYAGKAAGESLYCL"
     gene            336..1130
                     /locus_tag="ACFOCN_001756"
     CDS             336..1130
                     /locus_tag="ACFOCN_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFC6970862.1"
                     /translation="MNTILAFDIETVPDVQGIRTLYELPSSLPDDEVVLFAQQKRRAQ
                     TGGDFMQHHLHQIVAISCCMRWGQDKVHVGTIGEMDDGEEVVIAKFFELIEKHTPQLV
                     SWNGGGFDLPVLHYRSLIYGINAARYWDMGDGDFGDSRDFKWNNYISRYHQRHCDLMD
                     LLALYQPRANVPLDDMAKLCGFPGKLGMDGSKVWDAFHAGRLKEIRNYCETDAVNTYL
                     MYLRFCLVSGRFDADEYEMEIKRIRNYLSTQTEDKPHWSEFAQAWK"
     gene            1342..3945
                     /gene="pepN"
                     /locus_tag="ACFOCN_001757"
     CDS             1342..3945
                     /gene="pepN"
                     /locus_tag="ACFOCN_001757"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HFC6970863.1"
                     /translation="MSKTVRYLKDYQTPAYRILETDLHFDIAEPQTVVKSRLTVEPQR
                     VGEPLVLDGSTKLLSVKINGVAADYVLEGETLTIADVPSERFTVEVETEILPAENKSL
                     MGLYASGGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDG
                     GECSDGRHWVKWEDPFAKPSYLFALVAGDLAVTEDCFTTMGGRNVKIEFYTAEADKPK
                     VGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADS
                     RTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRA
                     VRRIENIRLLRQHQFPEDAGPTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLG
                     EEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGINLDQFALWYSQAGTPVLEAESRL
                     KNNIFELTIKQTVPPTPDMADKQPMMIPVKIGLLNRNGEAAAFDYQGKRATEAVLLLT
                     EAEQIFLLEGVTEAVFPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTL
                     YRRAVAANLAALSDGIELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGA
                     ENIDPLRYHQAREALLDTLAVRFLPKWHELNRQAAKQENQSYEYSPEAAGWRTLRNVC
                     RAFVLRADPAHIETVAEKYGEMAQNMTHEWGILSAVNGNESDTRNRLLAQFADKFSDD
                     ALVMDKYFALIGSSRRSDTLQQVQTALQHPKFSLENPNKARSLIGSFSRNVPHFHAED
                     GSGYRFIADKVIEIDRFNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSK
                     DVGEIVGKILD"
BASE COUNT         1033 a         1132 c         1138 g          897 t
ORIGIN      
        1 gattcccctg ttttaaaaaa tacttggcaa ggtgtgaaaa aaggcgtaca ttccgctaca
       61 cagaattaca gacgcagcgg agcaatgccg tctgaaagga ttttccggtc agtcttgcga
      121 ttggtcgggg tttcatcgga aacggtgaaa cgaaagtttg ccggcgtaga gttgagctac
      181 gcgggcaaag ccgcaggcga aagcctgtat tgtttgtgaa gcgtaaatct ctgatttgag
      241 gtattggggc aatcctgtgg ggggttgcct ctttttttat ccgcctttta atgacacaat
      301 aggcgcaagt ctgtttttga atgcaaggta ctgccatgaa tacgattttg gctttcgata
      361 ttgaaaccgt acccgatgtg cagggtatcc gaacattgta cgagctgccg tcctcgctgc
      421 ccgacgatga agtggtgctg tttgcccagc aaaaacgccg tgctcagacg ggtggggatt
      481 ttatgcagca tcatcttcat cagattgtgg cgatttcgtg ctgcatgcgt tgggggcagg
      541 ataaagtcca tgtcggcacc atcggcgaga tggacgatgg cgaagaagtc gtgattgcca
      601 aatttttcga gttgattgaa aaacatacgc cgcaactggt cagttggaac ggcggcggtt
      661 tcgacctgcc ggttctgcat taccgctccc tgatatacgg cattaacgcc gcgcgctatt
      721 gggatatggg cgacggcgat ttcggcgaca gccgcgattt caagtggaac aactacatca
      781 gccgttatca ccaacgccac tgcgatttga tggatttgct cgcgctttac cagccgaggg
      841 caaacgtgcc gctggacgat atggcgaaac tgtgcggttt tccgggcaag ctgggtatgg
      901 acggcagcaa ggtgtgggat gcgttccacg cgggcaggct gaaagaaatc cgcaattatt
      961 gcgaaaccga tgccgtgaat acgtatttga tgtatctgcg tttttgtctg gtcagcggca
     1021 gattcgacgc ggacgaatac gaaatggaaa tcaagcggat cagaaactat ctttccaccc
     1081 aaacagaaga taaaccgcat tggtcagaat ttgcccaagc gtggaaatag aaaacctgct
     1141 gtccgaaggc ggtacgcttg tgccgccgtt tcggtttcag acggcatatg gtggattaaa
     1201 ttcaaaccgg tacagcccgt actatctgta ctgtctgtgg cttcgtcgcc ttgtcctgat
     1261 ttttgttaat ccgctttaaa agctgtatcc gtgctgtctg aagccttttc cagtcaaacc
     1321 aaacaatatt gaaagaaaaa aatgagcaaa accgtccgtt atctgaaaga ttaccaaacg
     1381 cctgcctacc gcatccttga aaccgacctg cattttgata ttgccgaacc gcaaactgtc
     1441 gtgaaatccc gtttgacggt cgagccgcag agggtggggg agccgctggt gttggacggt
     1501 tcgacgaaac tcttgtccgt caaaatcaac ggcgtggcgg cggattatgt gttggaaggc
     1561 gagactctga cgattgcaga cgtgccgtcc gaacgcttca ccgtcgaagt ggaaaccgag
     1621 atcctgccgg cggaaaacaa atcgctgatg gggctgtatg cttccggtgg caatctgttt
     1681 acccaatgcg agccggaggg cttccgcaaa atcacgttct acatcgaccg tccggatgtg
     1741 atgtccaaat tcacgaccac catcgttgcg gacaaaaaac gctatcccgt tttgctctcc
     1801 aacggcaaca aaatcgacgg cggcgagtgt tcagacggcc gccattgggt gaaatgggaa
     1861 gacccgtttg ccaaaccgag ctatctgttt gctttggtcg cgggcgattt ggcggtcacg
     1921 gaagactgtt tcaccacgat gggcggcaga aacgtcaaaa tcgagtttta cactgccgag
     1981 gcggacaagc ctaaggtcgg ctttgccgtg gaatccttga aaaacgcgat gaagtgggac
     2041 gaaacgcgct tcggtttgga atacgacttg gatattttca tggtcgtcgc cgtgggcgat
     2101 ttcaatatgg gtgcgatgga aaacaagggg ctgaacattt ttaataccaa gttcgtcctt
     2161 gccgacagcc gtaccgccac cgataccgat tttgaaggca tcgaatccgt ggtcggacac
     2221 gagtatttcc acaactggac aggcaaccgc gttacctgcc gcgattggtt ccagctttcg
     2281 ctgaaagaag ggttgaccgt gttccgcgac caagaatttt ccggcgaccg cgccagccgc
     2341 gccgtgcgcc gcatcgagaa catccgcctg ctgcgccagc accagttccc cgaagacgca
     2401 ggcccgaccg cccatccggt gcgccccgcc agctatgagg agatgaacaa tttctacacc
     2461 atgaccgttt atgaaaaagg cgcggaagtg gtgcggatgt atcacacctt gctcggcgaa
     2521 gagggcttcc aaaaaggcat gaagctctat ttccaacgac acgacgggca ggccgtgacc
     2581 tgcgacgatt tccgcgcggc gatggcggac gcgaacggca tcaatctcga ccagttcgcc
     2641 ttgtggtaca gccaggcggg cacgcccgtt ttggaagcgg aaagccgtct gaaaaacaat
     2701 attttcgagt tgaccattaa acaaaccgtg ccgcccacgc ccgatatggc ggacaagcag
     2761 ccgatgatga ttcccgtcaa aatcgggctg ctgaaccgca acggcgaagc ggcggcattc
     2821 gattatcagg gcaaacgcgc gaccgaagcc gtattgctgc tgaccgaagc cgaacagatc
     2881 ttcctgctcg aaggcgtaac cgaagccgtc tttccctcgc tgctgcgcgg gttcagcgcg
     2941 ccggtgcatc tgaactatcc gtacagcgac gacgacctgc tgcttctgct cgcccatgac
     3001 agcgacgcct tcacgcgctg ggaagccgca caaacgctct accgccgtgc cgtcgccgcc
     3061 aaccttgccg cactttcaga cggtattgaa ctgccgaaac acgaaaaact gcttgccgcc
     3121 gtcgaaaaag tcatttcaga cgacctctta gacaacgcct tcaaagccct gcttttgggc
     3181 gtgccgtctg aagccgagct gtgggacggc gcggaaaaca tcgacccgct gcgctaccat
     3241 caggcgcgcg aagccttgtt ggacacgctt gccgtccgct tcctgccgaa atggcacgaa
     3301 ttgaaccgtc aggcggcgaa gcaggaaaac caaagctacg agtacagccc cgaagctgcc
     3361 ggctggcgca cgctgcgcaa cgtctgccgc gccttcgtcc tgcgcgccga ccccgcgcac
     3421 atcgaaaccg ttgccgaaaa atacggcgaa atggcgcaaa acatgaccca cgaatggggc
     3481 atcctgtccg ccgtcaacgg caacgaaagc gatacgcgca accgcctgct ggcgcagttt
     3541 gccgacaagt tttcagacga cgcgctggtg atggacaaat atttcgccct tatcggctca
     3601 agccgccgca gcgacaccct gcaacaggtt caaaccgcct tgcagcatcc gaaattcagc
     3661 ctcgaaaacc ccaacaaagc ccgttcgctc atcggcagct tcagccgcaa cgtcccgcat
     3721 ttccacgcag aagacggcag cggctaccgc ttcatcgccg acaaagtcat cgaaatcgac
     3781 cgcttcaacc cgcaggtcgc cgcccgtttg gtgcaggcgt tcaacctctg caacaagctc
     3841 gagccgcacc gcaaaaactt ggtgaaacaa gcattgcagc gcattcgggc gcaggaagga
     3901 ttgtcgaaag acgtgggcga aatcgtcggc aaaattttgg attgaggccg tcaaacagaa
     3961 aaacaatgcc gtctgatata gttacacaca cgttttatca tcacttcccc atcgttttat
     4021 tacgcaatgg caaaacggcc gcaaagtcat attaattata gtggattaac aaaaatcagg
     4081 acaaggcgac gaagccgcag acagtacaga tagtacggta aggcgaggca acgctgtact
     4141 ggtttttgtg aatccactat attgctagaa gtgcaccgat taaggttaat taaaatacga
//
LOCUS       DAXIFD010000155         4191 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.155, whole genome shotgun sequence.
ACCESSION   DAXIFD010000155 DAXIFD010000000
VERSION     DAXIFD010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.155"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..314)
                     /locus_tag="ACFOCN_001758"
     CDS             complement(<1..314)
                     /locus_tag="ACFOCN_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium:proton antiporter"
                     /protein_id="HFC6970864.1"
                     /translation="MDWMGSLFLPGGALLFLSVVSTTLPARLGMPLLLVSPAGVLDGA
                     AEALAIAAFLMLVARPPAVFGGLWKFNYSLREKAYSRIEMQSDTVLQAGIWRGTSCPT
                     ARS"
     gene            510..1236
                     /locus_tag="ACFOCN_001759"
                     /pseudo
     CDS             510..1236
                     /locus_tag="ACFOCN_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 family protein"
     gene            1305..2843
                     /gene="lnt"
                     /locus_tag="ACFOCN_001760"
     CDS             1305..2843
                     /gene="lnt"
                     /locus_tag="ACFOCN_001760"
                     /EC_number="2.3.1.269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFC6970865.1"
                     /translation="MVSKLDKYWQHPALYWPLLILFAAATPFTFAPYYHFWLMPLIFG
                     AFVRLIELRPRFAVSSAYLFGLTAYTTQFYWIHTALHDVSGLPDLYAVPLTFLLPAYL
                     ALYPALCFWLWKKFTLPRGIKIGLVLPILWTLTEFARERFLTGFGWGAIGYSQITPDS
                     PLAGFAPLGGIHMVTLATAFLGVWLVLASDNTARSGKRLLPIILIAALLAAGYTARQT
                     DFTRPDGSRSTVALLQGNIDQTLKWREDQVIPTIQKYYEQVGKTTADIVILPETAIPV
                     MRQNLPENILAKFAEQAQNNGSALAVGISQYTSDGNGYENAVINLTGYQENNQDGIPY
                     YAKNHLVPFGEYKPLPFLTTPLYKMMNMPLSDFRKGGGKQSALLMKNQKIAFNICYED
                     GFGDELIAAAKDATLLANASNMAWYGKSNAMYQHLQQSQARAMELGRYMVRATNTGAT
                     AIISPKGNIIAQAQPDTETVLEGHIKGYVGETPYMKTGSSWWLMGILTLAALILFIFR
                     NKEH"
     gene            3107..3970
                     /gene="rpoH"
                     /locus_tag="ACFOCN_001761"
     CDS             3107..3970
                     /gene="rpoH"
                     /locus_tag="ACFOCN_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HFC6970866.1"
                     /translation="MNNAFALPAIQSGNGSLEQYIHTVNSIPMLSQEEETRLAERRIK
                     GDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLF
                     SFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIADD
                     LGVKLSEVLEMEQRMTGHDIAIMADNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYAL
                     QTEGLQNALAQLDDRSRRIVESRWLQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKL
                     RGFLTEEAEAV"
BASE COUNT         1020 a         1294 c          967 g          910 t
ORIGIN      
        1 gaccttgccg tcgggcagga tgtaccacgc caaatccccg cctgaagcac ggtgtcggac
       61 tgcatttcga ttcggctata cgccttttca cgcaggctgt aattgaattt ccacaaaccg
      121 ccgaacactg ccggcggacg cgcgaccagc atcaggaacg ccgcaatcgc caaggcttcc
      181 gccgccccgt ccaacacgcc ggcgggagaa accagcagca aaggcattcc caaacgtgcg
      241 ggtaaagtgg tcgaaaccac gctcagaaac aacagtgcgc cacccggcag gaacagactg
      301 cccatccaat ccacgctaac gattctccct taaaattcat taaattaaaa tcgaaagact
      361 gtaacacggc attttctttt cacgaaactt tacttcacgt ccgccacagc gttcagacgg
      421 cattttcctg tttcatgccg cctgaaaccg cccaaatccg cgttctccta tataatgtcg
      481 gactttgcgc cgcatttcag gattctttaa tggcatttgc ctcactattt accctgccgg
      541 acgacatcac cgccgttttg gacgatgttg ccctgatgac caaagccgcc gcaaagaaaa
      601 ccgccggcgt ggtcggcgac gatttggcac ccaatgccaa ccgtgttacg ggcgtatcgg
      661 cagaacgcga gttgccgatt gtttggtcga tggcgaaagg ttctttttcc aacaagccgg
      721 ttttggtgcc tgcggccctg ctgctttccg ccttcctgcc gcaactcatt acgccgcttt
      781 tgacggcagg cggcatttat ctgtgctttg aaggcgtaga aaagctgctg cacaagtttc
      841 tgcaccgaca tgacgcgcat gctcgtaatg gcggcaatcg gcatcggcat gactgttttg
      901 gtgtacggaa tcgttgccgt catcgtcaaa ctcgacgact taggcatgct gctgatgcgc
      961 cgcccacaaa ccttttcgcg cagtttgggg caaatgctga ctgcctttat gccttgcttt
     1021 atgcgcggtt tgagcgtggt cggcacgctt gccatgtttc ttatcggcgg cgtactggtc
     1081 gcccacaacc tcggccttct gcacgatttc ctgcacgcgc aacactggga cgctggctgg
     1141 gcggagtact tcgccaacct cgttgtcggg ctgctttccg gttcgattgc ctgcgccccc
     1201 gccttgccgc tgatgaatcg tttcggcagg cattgatttc tttttcaaat accgatgccg
     1261 tttgaaagat gttcagacgg tatcttccga acagacagat gaatatggtt tccaaactgg
     1321 acaaatactg gcagcacccc gccctctact ggcctttgct catccttttt gccgccgcca
     1381 ccccctttac cttcgcaccc tactaccact tttggctgat gcccttgatt ttcggtgcct
     1441 tcgtccgcct catcgaactg cgtccgcgtt ttgctgtctc ttccgcctac ctgttcggcc
     1501 tgaccgcata cacgacacag ttctactgga tacacaccgc cctgcacgac gtttccggcc
     1561 tgcccgacct ctatgccgta ccgctgacct tcctactccc cgcctacctt gccctttatc
     1621 cggcactgtg tttctggctg tggaaaaaat ttaccctgcc tcggggcata aaaatcggtt
     1681 tggtactgcc catcctgtgg acactgaccg agtttgcccg cgaacgtttc ctgaccggat
     1741 tcggctgggg cgcaatcggc tactcccaaa tcaccccgga cagcccgctc gccggctttg
     1801 ccccattggg cggcatccac atggttacac tggcaaccgc ctttctcggt gtctggctgg
     1861 ttttggcgag tgataacacc gcacgttcgg gcaaacgcct gcttccaatt atcctgattg
     1921 ccgccctgct tgccgcaggc tacaccgccc gacaaaccga cttcacccgc cccgacggca
     1981 gccgcagcac cgtcgccctg cttcaaggca acatcgacca aaccctcaaa tggcgtgaag
     2041 accaagtcat cccgaccata cagaaatatt acgaacaggt cggcaaaacc actgccgaca
     2101 tcgtcatcct gcccgaaacc gccatccccg ttatgcgcca aaacctgccg gaaaacatac
     2161 tggcaaaatt tgccgaacag gcgcaaaaca acggcagcgc gctcgccgtc ggcatcagcc
     2221 aatacacttc ggacggcaac ggttacgaaa acgccgtcat caacctgacc ggttatcagg
     2281 aaaacaatca ggacggcatc ccctactacg ccaaaaacca cctcgtcccc ttcggcgaat
     2341 acaaaccgct gcccttcctg accacgccgc tttacaaaat gatgaatatg cccctttccg
     2401 acttccgcaa aggcggcggt aagcaatccg ccctgctgat gaaaaaccaa aaaatcgcct
     2461 tcaacatctg ttacgaagac ggattcggcg acgaactgat tgccgccgcc aaagatgcca
     2521 cactgcttgc caatgccagc aatatggcgt ggtacggaaa atccaacgcc atgtaccagc
     2581 acctccaaca atcgcaggcg cgggctatgg aactcggacg ctatatggtc cgtgccacca
     2641 acaccggcgc aaccgccatc atctccccca aaggcaacat catcgcccaa gcccaacccg
     2701 atacggaaac cgtattggaa ggacacatca aaggctatgt cggcgaaacg ccctatatga
     2761 aaaccggcag ttcatggtgg ttgatgggca tattgaccct agccgcactg attcttttca
     2821 tcttccgaaa caaagaacac tgatacctgc acagcccgtc cggacgggct gtcttttttc
     2881 aaaacggcta tttacataca attacgtatg taatataatt ctgaaatcga attgagccat
     2941 caggtttaca aaatcaatca aacctgcctt acaaaatttt cctgtctttc aaaccttagc
     3001 gcatatctcc tgccaaacat acaaaataca agccaagcag tgatatactg catcccaaca
     3061 cagcaaaccg ccgatacgca gtttcagccg aaaggaaatg ccccaaatga ataacgcttt
     3121 cgcattaccc gccatccaaa gcggcaacgg cagcctcgaa caatacatcc acaccgtcaa
     3181 cagcatcccg atgctgtccc aggaagaaga aacccgcctc gccgaacgcc ggataaaggg
     3241 cgacctcaac gccgccaaac aactcatcct gtcccacctg cgcgtcgtcg tttccatcgc
     3301 gcgcggctat gacggctacg ggctgaatca ggcagacctg attcaggaag gcaatatcgg
     3361 actgatgaag gcggtcaaac gctacgagcc cggtagaggc gcgcgtctgt tttcatttgc
     3421 cgtacactgg attaaagccg aaatccacga gtttattttg agaaactggc gtttggttcg
     3481 cgttgccacc accaaaccgc aacgcaagct gtttttcaat ttacgcagta tgcgtaaaaa
     3541 cctcaacgcc ctgtctccca aagaggcaca agacatcgcc gacgatttgg gtgtcaaact
     3601 ttccgaagtt ctggaaatgg aacagcgcat gacgggacac gacatcgcca tcatggcaga
     3661 caacagcgac gacgaggaca gtttcgcccc catcgactgg cttgccgacc acgattccga
     3721 accgagccgg caactatcga aacaggcgca ttacgccctg caaacagaag gtttacaaaa
     3781 cgctttggcg caactggatg acaggagccg ccgtattgtg gaaagccgct ggcttcaaga
     3841 cgacggcggg ctgacgctgc accagcttgc tgcagaatac ggcgtctctg ccgagcgcat
     3901 ccgccagatt gaagcaaaag ccatgcagaa actgcgtggt ttcctgaccg aagaagccga
     3961 agcggtttga aatatacgca ataaaatacc cgacaaattg ttttgtcggg tattttattt
     4021 ggtaaacatc aatgcggttt gtgcgtcgtg ctgtacacga ttttatccgt ccacgccgtt
     4081 gcaattgccg aaatcaaaaa gcagacatgc accagacact gccgcatcag ctgcttttcc
     4141 gacagattgg cggaattgat atagtggatt aacaaaaatc aggacaaggc g
//
LOCUS       DAXIFD010000156         4184 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.156, whole genome shotgun sequence.
ACCESSION   DAXIFD010000156 DAXIFD010000000
VERSION     DAXIFD010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.156"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..324
                     /locus_tag="ACFOCN_001762"
     CDS             <1..324
                     /locus_tag="ACFOCN_001762"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970867.1"
                     /translation="RKQIGGRPGKPAPNASGKYAYRWKTQPHPPPGVSDGTAAAGNVR
                     RLRHRRTQNRMPAPATIRQIPLFFPNRLQVSPIRRVMPPPPFKGNARVNGFAVGKAAG
                     YRYVS"
     gene            431..955
                     /gene="nspA"
                     /locus_tag="ACFOCN_001763"
     CDS             431..955
                     /gene="nspA"
                     /locus_tag="ACFOCN_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein NspA"
                     /protein_id="HFC6970868.1"
                     /translation="MKKALATLIALALPAAALAEGASGFYVQADAAHAKASSSLGSAK
                     GFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLG
                     ARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKN
                     VRSGELSVGVRVKF"
     gene            1091..1480
                     /locus_tag="ACFOCN_001764"
     CDS             1091..1480
                     /locus_tag="ACFOCN_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6970869.1"
                     /translation="MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVV
                     GNGDFRAEARQVFQNLQAVAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPF
                     PARAAVGVASLPKGVQVEAEAVLVLNA"
     gene            1558..2388
                     /locus_tag="ACFOCN_001765"
     CDS             1558..2388
                     /locus_tag="ACFOCN_001765"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008803 -
                     bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HFC6970870.1"
                     /translation="MAHYAIGDIQGCFDELTALLGKIGFNHGTDTLWLTGDIVNRGPK
                     SLETLQFCIRHENSVQIVLGNHDLHLLAVGCGEGAPKRSDTIEPILKHPDGKKMLDWL
                     RAQPLLIREGSRVMVHAGILPQWRITKAESLAREAEAELRGKKYVKFFSKMYGNKPAA
                     WDEGLKGYARLRFIVNAFTRMRALTFKNELDFDYKSTVKKMPPYLRPWFKAPDRQNLD
                     RTIIFGHWSSLGYTNADNVISLDTGALWGGQLTAVNLETEEITQVQAAGGIDWKSFAK
                     "
     gene            2403..3860
                     /locus_tag="ACFOCN_001766"
     CDS             2403..3860
                     /locus_tag="ACFOCN_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HFC6970871.1"
                     /translation="MHKILPIAHVLSRLGMLFSFILLIPAALSYAFSDGAYTAFATTA
                     TVTLSGSCIVRLATLRFRRELRPRDGFTLVLMLWLAFAAMAAMPMYLYFPNMGFTDAF
                     FESMSGLTTTGATVIPHVDGLAPSVNFWRHMLNWLGGMGIIVLAVAILPMLGVGGTQL
                     FKAEIPGIDKESKMSPRISQVAKKLWFGYTLITILAAACLHFAGMGWFDAVCHAMATL
                     SLGGFSTHDASIAYYNSPLIEAVIIVFTIVGGINFANHFAALNSRSLKTYWKDEECRT
                     MLLLLSGSILAAALYLWHTGYYAGFTESLRYTAFNFVSIGLANGLANTDFAQWPLLIS
                     LWMFFLANILANSGSTGGGIKTIRALVLFKFSLREMMVLLHPKAVRTVKISGKAIPDR
                     LALTVMSFIFIYFMTVVLFSFLLMASGMEFTTAFTAVIACITNAGPGLGEVGPAGNYA
                     GLDVMQKWICVTAMLLGRLEIFTVFILFTPAYWKK"
     gene            complement(3901..>4184)
                     /locus_tag="ACFOCN_001767"
     CDS             complement(3901..>4184)
                     /locus_tag="ACFOCN_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970872.1"
                     /translation="VRDTPIDTIPLYIFDLIDFDKGIGEIYDVIGVVNYGYISNDQKN
                     ALTGIAFLRGIDVYDPPISKEKALKALEKYPEIYQRFQHFFPFVELPLL"
BASE COUNT          971 a         1379 c          960 g          874 t
ORIGIN      
        1 cgcaaacaaa tcggcggccg cccgggaaaa cccgccccga acgcgtccgg aaaatatgct
       61 tatcgatgga aaacgcagcc gcatcccccg ccgggcgttt cagacggcac agccgccgcc
      121 ggaaatgtcc gacgcttaag gcacagacgc acacaaaacc gtatgcctgc acctgcaaca
      181 atccgacaga taccgctgtt ttttccaaac cgtttgcaag tttcacccat ccgccgcgtg
      241 atgccgccgc caccatttaa aggcaacgcg cgggttaacg gctttgccgt cggcaaagca
      301 gccggatacc gctacgtatc ttgaagtatt gaaaatatta cgatgcaaaa agaaaattta
      361 agtataatac agcaggattc tttaacggat tcttaacaat ttttctaact gaccataaag
      421 gaaccaaaat atgaaaaaag cacttgccac actgattgcc ctcgctctcc cggccgccgc
      481 actggcggaa ggcgcatccg gcttttacgt ccaagccgat gccgcacacg caaaagcctc
      541 aagctcttta ggttctgcca aaggcttcag cccgcgcatc tccgcaggct accgcatcaa
      601 cgacctccgc ttcgccgtcg attacacgcg ctacaaaaac tataaagccc catccaccga
      661 tttcaaactt tacagcatcg gcgcgtccgc catttacgac ttcgacaccc aatcgcccgt
      721 caaaccgtat ctcggcgcgc gcttgagcct caaccgcgcc tccgtcgact tgggcggcag
      781 cgacagcttc agccaaacct ccatcggcct cggcgtattg acgggcgtaa gctatgccgt
      841 taccccgaat gtcgatttgg atgccggcta ccgctacaac tacatcggca aagtcaacac
      901 tgtcaaaaac gtccgttccg gcgaactgtc cgtcggcgtg cgcgtcaaat tctgatatgc
      961 gccttattct gcaaaccgcc gagccttcgg cggttttgtt ttctgccacc gcaactacac
     1021 aagccggcgg ttttgtacga taatcccgaa tgctgcggct tctgccgccc tattttttga
     1081 ggaatccgaa atgtccaaaa ccatcatcca caccgacaaa gcccccgccg ccatcggcgc
     1141 gtacagccaa gccgtccgag caggcgacac cgtttacatg agcggtcaaa tccccctcga
     1201 tcccgccacg atgaccgtcg tcggcaacgg cgatttccgc gccgaagcgc gccaagtgtt
     1261 ccaaaacctg caagccgtcg ccgaagcggc aggcggcacg ctggccgaca tcgtcaaact
     1321 caacgcctac ctgaccgact tgggcaattt tgccgtcttc aacgaagtca tggcggaatt
     1381 tatcgccgag cccttccccg cccgcgccgc cgtcggcgtt gcctcgctgc ccaaaggcgt
     1441 gcaggtcgaa gccgaagccg tcctcgtttt gaacgcataa ttccacgttc ggactgcatg
     1501 atatttcaaa accatgccgt ccgaaccgca acactttccc acttcacaac atctgcaatg
     1561 gcacattacg caatcggcga catacaaggc tgtttcgacg aactgaccgc gctgctcggc
     1621 aaaatcggtt tcaaccacgg cacggacacc ctctggctga cgggcgacat cgtcaaccgc
     1681 ggcccgaaat ccctcgaaac gctgcaattc tgcatccggc acgaaaacag cgtgcaaatc
     1741 gtcctcggca accacgacct gcacctgctc gctgtcggct gcggcgaagg tgcgcccaaa
     1801 cgcagcgaca caatcgaacc catactcaaa caccccgacg gaaaaaaaat gctcgactgg
     1861 ctgcgtgcgc aaccgctgtt gatacgcgag ggcagccgcg tgatggtaca cgccggcatc
     1921 ctgccgcaat ggcgcataac caaagccgaa tcgctcgcta gagaagccga agccgaactg
     1981 cgcggcaaaa aatacgtcaa attcttctcc aaaatgtacg gcaacaaacc ggccgcgtgg
     2041 gacgaaggtt tgaaaggcta tgcccgcctg cgcttcatcg tcaacgcctt cacgcggatg
     2101 cgcgccctga cctttaaaaa cgaactggat ttcgactaca aatccacagt gaaaaaaatg
     2161 ccgccttacc tgcgcccgtg gttcaaagcc cccgaccggc aaaacctcga ccgcaccatc
     2221 atcttcggac actggtcctc gctgggctac acgaatgccg acaacgtcat ctcgctggac
     2281 accggcgcgc tgtggggcgg acagctgacc gccgtcaacc tcgaaacgga agaaattacc
     2341 caagtccaag ccgccggcgg catagactgg aaaagcttcg caaaataacg gaccgcccca
     2401 ctatgcacaa aatcctgccc atcgcccacg tcctctcccg actgggtatg ctgttttcct
     2461 ttatcctgct gatacccgcc gccctctcct acgccttttc ggacggcgcg tacaccgcct
     2521 tcgccaccac cgcgaccgtt accctttccg gctcgtgcat cgtccggctc gccaccctcc
     2581 ggttcaggcg cgaactgcgc ccgcgcgacg gctttaccct cgtcctgatg ttgtggctgg
     2641 cgtttgccgc tatggctgcg atgccgatgt acctgtattt cccgaatatg ggctttaccg
     2701 acgcattttt tgaatcgatg tcgggactga ccaccaccgg cgcgaccgtc atcccccacg
     2761 tcgacgggct cgccccctcc gtcaactttt ggcggcatat gctcaactgg ctgggcggga
     2821 tgggcatcat cgtccttgcc gtcgccatcc tgcctatgct cggcgtaggc ggcacgcagt
     2881 tattcaaagc cgaaatcccc ggcattgaca aagaaagcaa aatgtcgccg cgcatttccc
     2941 aagtggcgaa aaaactttgg ttcggctaca ccctgatcac catcctcgcg gcagcctgcc
     3001 tgcattttgc cgggatgggc tggttcgatg ccgtctgtca cgcgatggcg accctctcgc
     3061 tgggcgggtt ttccacccac gatgccagca tagcttatta caactccccc ctcatcgaag
     3121 cggtcatcat cgttttcacc attgtcggcg gcatcaattt tgccaaccat ttcgccgccc
     3181 tcaacagccg cagcctcaaa acctattgga aagacgaaga atgccggacg atgctgctgc
     3241 tgctctccgg cagcatcctt gccgccgccc tgtacctgtg gcacaccggc tattacgccg
     3301 gttttaccga atccctgcgc tacaccgcct tcaacttcgt ctccatcgga ctggcaaacg
     3361 ggctggccaa caccgacttc gcacaatggc cgctcctgat ttccctgtgg atgtttttcc
     3421 tcgccaacat cctcgccaac tccggctcga ccggcggcgg catcaaaacc atacgcgccc
     3481 tcgtcctgtt caaattcagc ctgcgcgaaa tgatggtgct gctgcacccc aaagccgtcc
     3541 gcaccgtcaa aatcagcggc aaggccatac ccgaccgcct cgcgctgacc gttatgtcct
     3601 tcatcttcat ctactttatg accgtcgtcc tcttcagctt cctgctgatg gcgagcggta
     3661 tggaatttac caccgccttc accgccgtca tcgcctgcat caccaacgcc ggccccggcc
     3721 tgggcgaagt cgggcccgcc ggcaattacg ccggtttgga cgtgatgcag aaatggatct
     3781 gcgttaccgc catgctcttg ggcaggctgg aaatcttcac cgtcttcatc ctcttcaccc
     3841 ccgcctactg gaagaaataa aaaatgccgt ctgaaaactt ttcagacggc atcttgtcct
     3901 ttaaagaagc ggaagctcta caaaaggaaa gaaatgctga aacctctgat aaatttcagg
     3961 atatttctct aaggctttta atgctttttc ttttgaaata ggcggatcat agacatctat
     4021 cccccttaag aaggcaatgc ccgttaatgc atttttttga tcatttgaaa tgtaaccata
     4081 attaacgact ccaattacat cataaatttc ccctataccc ttatcaaaat caatcaaatc
     4141 aaaaatatac aatggaattg tatcaatagg agtatctctg acaa
//
LOCUS       DAXIFD010000157         4130 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.157, whole genome shotgun sequence.
ACCESSION   DAXIFD010000157 DAXIFD010000000
VERSION     DAXIFD010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.157"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            43..675
                     /locus_tag="ACFOCN_001768"
     CDS             43..675
                     /locus_tag="ACFOCN_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HFC6970873.1"
                     /translation="MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHA
                     DYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPY
                     QDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVG
                     KAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA"
     gene            747..2117
                     /gene="purB"
                     /locus_tag="ACFOCN_001769"
     CDS             747..2117
                     /gene="purB"
                     /locus_tag="ACFOCN_001769"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFC6970874.1"
                     /translation="MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLK
                     ALAAEPKIVEVPPFSAGTLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKR
                     FAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTAMAHDL
                     AAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKILQAQEFLGKINGAVGNYNAHMA
                     AYPDVDWETHCHNFVEIGLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVW
                     GYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLAEKLPVSRWQ
                     RDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTV
                     MRRYGVANPYEKLKDLTRGKGGITPEVLKVFIGSLEIPAEAKAKLLELTPALYVGKAE
                     ALAKRI"
     gene            2198..4066
                     /locus_tag="ACFOCN_001770"
     CDS             2198..4066
                     /locus_tag="ACFOCN_001770"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HFC6970875.1"
                     /translation="MQAVRYRPEIDGLRAVAVLSVIIFHLNNRWLPGGFLGVDIFFVI
                     SGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQM
                     RKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKK
                     TKSLRVLRNISIILFLILTATSFLPSRFYTDILNQPNTYYLSTLRFPELLAGSLLAVY
                     GQTQNGRRQTASGKRQLLSLLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRS
                     MQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALT
                     AGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPG
                     APLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDTTLAD
                     NPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFQARFRETVKRIAA
                     VKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLVKDIPNV
                     HWVDAQKYLPKNTVEIHGRYLYGDQDHLTYFGSYYMGREFHKHERLLKSSRGGALQ"
BASE COUNT          935 a         1113 c         1075 g         1007 t
ORIGIN      
        1 tttttgacgg tgtacaatcg ctgtttttga acggaggatg gaatggagaa tacaaaccgt
       61 gtgccggagc aggcacgtta tgatgccgaa cgcaggcagg cagacgaagc attggcgggc
      121 gtgtttccgg cagtcagtat cttcggcagc gcgcgcacgc cgcagaatca tgcggattat
      181 gcgttcgcct gccgtctggc gcggcggctg tcggattcgg gcattgccgt catttcgggc
      241 ggcgggccgg ggattatgga ggcggcaaac aagggcgcgt ttgcagggaa gtcggtttcg
      301 gtggggctga acatcgtttt gccgcacgag cagaaaccga atccgtatca ggacatcgcc
      361 ttgcggtttt cccgttttgc cgaacgcaag gcggtgtttt tccgctattc ccaagcatat
      421 gtcgtgatgc cgggcggctt cgggacgctg gacgaattgt ttgaaatcct gaccttggtg
      481 cagacgggca aagtgccgcc gcgtccgatt gttttggtcg gaaaggcgtt ttggtcgggc
      541 ttggcggagt ggataaacgc gcagcttttg gcgcgcgggc tgatttccga aggggcggtc
      601 tctttgtttg ccatatcgga cgatgaagac gaaatcgttg cgtatctgtc ggaacacggg
      661 cttcagacgg catagcgtcc tgagagtgat gtataattgc aaacaattta acaatttttg
      721 atgtctttcc cgaacaggat gccgaaatga tcaaccccat cgcctcgctt tcccctttag
      781 acggccgtta tgcccaatcc gttgaagcat tgcgcccgat tttttcagag tacggcctga
      841 tgaaggcgcg cgtcaaagtc gaattaaact ggctcaaagc cctggccgcc gagccgaaga
      901 ttgtcgaagt gccgcccttc agtgccggaa cgcttgccga aatcgacacg gtgattgaaa
      961 acttttcatt ggaagacgcg gccgccgtca aagccatcga agccacgacc aatcatgatg
     1021 tcaaagccat tgaatattgg ctgaaaaaac gttttgccga agtgccggaa gtcgccgccg
     1081 tgagtgagtt catccacttc gcctgcacca gcgaagacat caacaacctg tcccacgctt
     1141 taatgctgca agaagcgcgt gaggctgttt tgctgccgaa gctggccgaa atcatcgaaa
     1201 aactgaccgc tatggcgcac gaccttgccg ccgtcccgat gatgagccgc acccacggcc
     1261 agcccgccac gcccacaaca ctgggcaaag aaaccgccaa cgtcgtgtac cgcctgcaac
     1321 gccagttcaa aatccttcag gcgcaagaat tcctcggcaa aatcaacggt gcggtcggca
     1381 actacaatgc ccatatggcc gcttatcccg atgtggattg ggaaacccac tgccacaact
     1441 tcgttgaaat cggcctcggt ttgaccttca acccctatac catccaaatc gagccgcacg
     1501 actatatggc tgaattcttc caaaccctca gccgcatcaa cacgattctc atcgacttta
     1561 accgcgacgt ttggggttat atttcattgg gttacttcaa acaaaaagtc aaagcgggcg
     1621 aagtcggctc ttccacgatg ccgcacaaag tcaaccccat cgattttgaa aactccgaag
     1681 gcaacctcgg tatggcaaac gccgtattgg gttttttggc ggaaaaactg cccgtctcac
     1741 gctggcagcg cgatttgacc gacagcaccg tcttacgcaa tatgggcgtg ggcgtgggct
     1801 atgccgtgtt gggctttgcc gcccacctgc gcggtctgaa caagctcgaa cccaaccctg
     1861 ccgcgcttgc cgccgatttg gatgccactt gggagctgct cgccgagccg attcaaaccg
     1921 tgatgcgtcg ttacggcgtg gccaatcctt acgaaaagct caaagacctg acgcgcggca
     1981 aaggcggcat tacgcccgaa gtgctgaaag tcttcatcgg atcgttggaa attccggcag
     2041 aagccaaagc aaaattgctt gagctgactc ctgcactgta tgtgggcaag gctgaagcgt
     2101 tggcgaaacg gatttgagcg tttactgaaa ccgatgccgt ctgaacgcgc gttcagacgg
     2161 catttttaag ataacgggac atacgggggc gatatttatg caagctgtcc gatacaggcc
     2221 tgaaattgac ggattgcggg ccgttgccgt gctatccgtc attattttcc acctgaataa
     2281 ccgctggctg cccggagggt ttttgggggt ggacattttc tttgtcatct cgggattcct
     2341 cattaccggc atcattcttt ctgaaataca gaacggttct ttttctttcc gggattttta
     2401 tacccgcagg attaagcgga tttatcctgc ttttatcgcg gccgtgtcgc tggcttcggt
     2461 gattgcctct caaatcttcc tttacgaaga tttcaaccaa atgcggaaaa ccgtggagct
     2521 ttctgcggtt ttcttgtcca atatttatct ggggtttcag caggggtatt tcgatttgag
     2581 tgccgacgag aaccccgtac tgcatatctg gtctttggcg gtagaggaac agtattacct
     2641 cctgtatcct cttttgctga tattttgctg caaaaaaacc aaatcgctac gggtgctgcg
     2701 taacatcagc atcatcctat ttctgatttt gactgccaca tcgtttttgc caagcaggtt
     2761 ttataccgac atcctcaacc aacccaatac ttattacctt tcgacactga ggtttcccga
     2821 gctgttggca ggttcgctgc tggcggttta cgggcaaacg caaaacggca gacggcaaac
     2881 agcaagcgga aaacggcagt tgctttcatt actctgcttc ggcgcattgc ttgcctgcct
     2941 gttcgtgatt gacaaacaca atccgtttat cccgggaatg accctgctcc ttccctgcct
     3001 gctgacggca ctgcttatcc ggagtatgca atacgggaca cttccgaccc gcatcctgtc
     3061 ggcaagcccc atcgtatttg tcggcaaaat ctcttattcc ctatacctgt accattggat
     3121 ttttattgcc ttcgcccatt acattacagg cgacaaacag ctcggactgc ctgccgtatc
     3181 ggcggttgcc gcattgacgg ccggattttc cctgttgagc tattatttga ttgaacagcc
     3241 gcttagaaaa cggaagatga ccttcaaaaa ggcatttttc tgcctctatc tcgccccgtc
     3301 cctgatactt gtcggttaca acctgtacgc aagggggata ttgaaacagg aacacctccg
     3361 cccgttgccc ggcgcgcccc ttgctgcgga aaatcatttt ccggaaaccg tcctgaccct
     3421 cggcgactcg cacgccggac acctgcgggg ttttctggat tatgtcggca gccgggaagg
     3481 gtggaaagcc aaaatcctgt ccctcgattc ggagtgtttg gtttgggtgg atacgacact
     3541 ggcagacaac ccgttatgtc gaaaataccg ggatgaagtt gaaaaagccg aagccgtttt
     3601 cattgcccaa ttctatgatt tgaggatggg cggccagccc gtgccgagat ttgaagcgca
     3661 atccttccta atacccgggt tccaagcccg attcagggaa accgtcaaaa ggatagccgc
     3721 cgtcaaaccc gtctatgttt ttgcaaacaa cacatcaatc agccgttcgc ccctgaggga
     3781 ggaaaaattg aaaagatttg ccgcaaacca atatctccgc cccattcagg ctatgggcga
     3841 catcggcaag agcaatcagg cggtctttga tttggttaaa gatatcccca atgtgcattg
     3901 ggtggacgca cagaaatacc tgcctaaaaa cacggtcgaa atacacggac gctatcttta
     3961 cggcgaccaa gaccacctga cctatttcgg ttcttattat atggggcggg aatttcacaa
     4021 acacgaacgc ctgcttaaat cttcccgcgg cggcgcattg cagtagcctg ccttcttgtc
     4081 ggatattgcc tttggcagcc tatgccgctg tttgcccttc ggggcggcgg
//
LOCUS       DAXIFD010000158         4098 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.158, whole genome shotgun sequence.
ACCESSION   DAXIFD010000158 DAXIFD010000000
VERSION     DAXIFD010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.158"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(202..1098)
                     /gene="argB"
                     /locus_tag="ACFOCN_001771"
     CDS             complement(202..1098)
                     /gene="argB"
                     /locus_tag="ACFOCN_001771"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HFC6970876.1"
                     /translation="MESENIISAADKARILAEALPYIRRFSGSVAVIKYGGNAMTEPA
                     LKEGFARDVVLLKLVGIHPVIVHGGGPQINAMLEKVGKKGEFVQGMRVTDKEAMDIVE
                     MVLGGHVNKEIVSMINTYGGHAVGVSGRDDHFIKAKKLLIDTPEQNGVDIGQVGTVES
                     IDTGLVKGLIERGYIPVVAPVGVGEKGEAFNINADLVAGKLAEELNAEKLLMMTNIAG
                     VMDKMGNLLTKLTPKRIDELIADGTLYGGMLPKIASAVEAAVNGVKATHIIDGRLPNA
                     LLLEIFTDAGIGSMILGGGEDA"
     gene            1268..2398
                     /locus_tag="ACFOCN_001772"
     CDS             1268..2398
                     /locus_tag="ACFOCN_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14-type cytosolic carboxypeptidase"
                     /protein_id="HFC6970877.1"
                     /translation="MIKISTRFDAGSVVVKDLTDPSNIRLALRPDNASDFAQWFYFRL
                     QGAAYQNCIMHFDNAAEAAYPKGWEGYQACASYDRRNWFRVPTSYENGVLTVNHTPLS
                     NSVYYAYFEPYSEEQHLNLLGDAQGSGLCRIDDLGSTVQGRDINLLTIGNQVESDLKI
                     WITARQHPGETMAEWFVEGLLGRLLDHQDATARTLLDRATFYIVPNMNPDGSALGNLR
                     TNAAGVNLNREWENPTVEKSPEVFFVRERMLETGVDLFLDIHGDEGLPFVFVAGTEGV
                     PNYNPRISALETQFKTALLNASPDFQDEYGYEKDAPGQANVTLATNWVGNRFNCLAYT
                     LEMPFKDNANLPDDDFGWNGQRSLRLGEAVLSAILNVAGDLR"
     gene            2471..3322
                     /gene="lgt"
                     /locus_tag="ACFOCN_001773"
     CDS             2471..3322
                     /gene="lgt"
                     /locus_tag="ACFOCN_001773"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HFC6970878.1"
                     /translation="MITHPQFDPVLISIGPLAVRWYALSYILGFILFTFLGRRRIAQG
                     LSVFTKESLDDFLTWGILGVIFGGRLGYVLFYKFSDYLAHPLDIFKVWEGGMSFHGGF
                     LGVVIAIWLFGRKHGIGFLKLMDTVAPLVPLGLASGRIGNFINGELWGRVTDINAFWA
                     MGFPQARYEDAEAAAHNPLWAEWLQQYGMLPRHPSQLYQFALEGICLFAVVWLFSKKQ
                     RPTGQVASLFLGGYGIFRFIAEFARQPDDYLGLLTLGLSMGQWLSVPMIVLGIVGFVR
                     FGMKKQH"
     gene            complement(3405..4067)
                     /locus_tag="ACFOCN_001774"
     CDS             complement(3405..4067)
                     /locus_tag="ACFOCN_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HFC6970879.1"
                     /translation="MDSQKFTEASKRRLSELLDAKSEQGNTMRCDEVQGFMTALLSGP
                     DKLTPLDWLPEVLGDESQFTAAERSEIERLVLAMAMETTAAMSDKKLPDLWLYENEDG
                     GSDFYTWCNAYLYGLDIVPTDWFEAVDDEAFEELFYPIMALGGIYDEEDNGTIRLQFT
                     EGELAELESELPYALADIYRYWQAVINKPQTVRREGEKTGRNDPCPCGSGRKYKACCG
                     KN"
BASE COUNT          904 a         1195 c          997 g         1002 t
ORIGIN      
        1 aaaatcaaag ccggagaatt tatcccaaac aaccggattt caaaaaaacc agattcccgc
       61 cttcgcggga atgacggatt ttaggtttct gttttggttt ctgttttcgc gggaataaca
      121 acttagaaat tgcccgaaac cccaaaaaca gaaaccggac aaacgggttt tccgccaaag
      181 ccggcatttt ccgactttgc ttcaggcatc ttccccgccg cctaaaatca tcgaaccgat
      241 accggcatca gtaaagattt ccaacaaaag cgcgttgggc aacctgccgt cgatgatgtg
      301 cgtggctttc acaccgttga cggcggcttc gaccgcagaa gcgattttcg gcagcatacc
      361 gccatacagc gtgccgtcgg caatcagttc atcaatccgt ttcggcgtga gtttggtcag
      421 cagattgccc attttgtcca tcacaccggc gatattcgtc atcatcaaga gtttttcagc
      481 gttcaattct tccgccaatt tgcctgctac caaatcggcg ttgatgttga acgcttcgcc
      541 tttttcacct acgccgacgg gggcgacgac gggaatgtag ccgcgttcta tcagcccttt
      601 aaccaaaccg gtatcgatgc tttccaccgt accgacctgt ccgatgtcca cgccattctg
      661 ttcgggcgta tcgatcaaaa gtttcttcgc cttaatgaaa tgatcgtcgc gtccgctcac
      721 gccgaccgcg tgtccgccat atgtgttaat catcgacacg atttctttat tgacatgccc
      781 gcccaacacc atttcgacaa tatccatcgc ctctttgtcg gtaacgcgca ttccttggac
      841 aaactcaccc tttttgccga ctttttcaag catcgcattg atctgcggcc cgccgccgtg
      901 aacgatgacg ggatgaatgc cgaccagctt cagcagcacg acatcgcggg caaacccttc
      961 tttcaaggca ggttcggtca tcgcgttgcc gccgtatttg atgacggcga ccgaaccgga
     1021 aaaccggcgg atgtaaggca gcgcttcggc aaggatacgc gccttgtcgg cggcggaaat
     1081 aatgttttca gactccataa cggctcccta ttgttgacaa tttcggctta tgttaacgcc
     1141 aaacgccgtc tgaaacaatc ttcagacggc atccggcaga ctttcgggca ggttgaagcc
     1201 ttgcgatacg ggcggtaaaa tcgcggttta tccggttcga gaaaccggcg acagcaagga
     1261 ctttcccatg attaaaatca gcacccgctt cgatgccggc tcggtcgtcg tcaaagacct
     1321 gaccgatcct tccaacatcc gcctcgccct gcgtcccgac aacgcctccg attttgcaca
     1381 atggttctac ttccggctgc aaggcgcggc atatcaaaac tgcatcatgc attttgacaa
     1441 tgcggcagaa gccgcctacc cgaaaggctg ggaaggctat caggcgtgtg cctcatacga
     1501 ccgccgcaac tggttccgcg taccgacttc ctacgaaaac ggcgtactga ccgtcaacca
     1561 taccccgctg tccaatagcg tgtactacgc ctatttcgaa ccctattccg aagaacagca
     1621 cctcaacctc ctcggcgacg cgcaaggcag cggcctgtgc cgcatcgacg acttgggcag
     1681 caccgtgcaa gggcgcgaca tcaatctgct gaccataggc aaccaggtcg aaagcgattt
     1741 gaaaatctgg attaccgccc gccagcatcc aggcgaaacc atggcggaat ggtttgtcga
     1801 ggggctgctc ggcagactgc tcgaccatca ggatgcaacc gcgcgcaccc tgctcgatcg
     1861 cgccacgttc tatatcgtcc ccaacatgaa ccccgacggt tcggcactgg gcaaccttcg
     1921 caccaacgcc gccggtgtga acctcaaccg cgaatgggaa aatccgactg tggaaaaaag
     1981 ccccgaagtg ttcttcgtgc gtgaaagaat gctggaaacc ggcgtggatt tgtttttgga
     2041 tatccacggc gacgaagggt tgccctttgt ctttgttgca ggaactgaag gcgtgccgaa
     2101 ctacaatccg cgcatttccg cgttggaaac acagttcaaa accgcccttt tgaacgccag
     2161 ccccgatttc caagatgaat acggttacga aaaagatgcg cccggtcagg caaacgtgac
     2221 cttggcaaca aactgggtcg gcaaccgttt caactgcctt gcctatacgt tggaaatgcc
     2281 gttcaaagac aatgccaacc tgcccgacga cgacttcggg tggaacggtc aacgttcgtt
     2341 gcgcttgggc gaagcggtgc tttccgccat tttgaacgtc gccggcgatt tgcgttgaca
     2401 ctccccactg aaaaatgccg tctgaaagcc cttccccttt tcagacggca tttgaaaacg
     2461 aaagcccgtt atgattaccc atccccaatt cgaccccgtc cttatcagta tcggtccgct
     2521 tgccgtccgc tggtatgccc taagctacat cctcggattt attcttttta cctttctcgg
     2581 cagaaggcgc atcgcgcaag gcttgtccgt ttttaccaaa gaatcgcttg acgacttcct
     2641 cacttggggc attttgggcg taatttttgg tgggcgtttg ggttacgtcc tgttttacaa
     2701 gttttccgac tacctcgccc atccgcttga tattttcaag gtatgggaag gcggaatgtc
     2761 gttccacggc ggctttttgg gtgtagttat tgccatatgg ttgttcggcc gcaaacacgg
     2821 catcggcttc ctcaaactga tggacacggt cgcaccgctc gttccgctgg gtctcgcttc
     2881 gggacgtatc ggcaacttca tcaacggcga actttgggga cgcgttaccg acatcaacgc
     2941 attttgggca atgggcttcc cgcaggcgcg ttacgaagat gccgaagccg ccgcgcacaa
     3001 tccgctttgg gcagaatggc tgcaacaata cggtatgctg ccgcgtcatc cctcgcagct
     3061 ttatcagttt gcacttgaag gcatctgcct gttcgccgtc gtttggctgt tctctaaaaa
     3121 acagcggccg accggacaag tcgcctcgct cttcctcggc ggctacggca tattccgctt
     3181 cattgccgaa ttcgcacgcc aacccgacga ctatctcggg ctgctgacct tggggctgtc
     3241 gatggggcaa tggttgagcg tcccgatgat tgttttgggt atcgtcggct ttgtccggtt
     3301 cggcatgaaa aaacagcact gaccgcctgt gaaaaatacc gtctgaaaca tggaaatccg
     3361 gtttcagacg gcatttttac gtttggttca tggaaacaaa cgcttcaatt cttaccgcaa
     3421 cacgccttgt attttctgcc gctgccgcac ggacagggat cgttcctgcc tgttttttcg
     3481 ccttccctgc ggacggtttg cggcttgttg atgaccgcct gccagtagcg gtagatatcc
     3541 gccaatgcat aaggcaactc ggattccagt tccgccagct cgccttctgt gaattgcaga
     3601 cggatagtgc cgttgtcctc ttcgtcgtaa ataccgccca atgccatgat gggataaaac
     3661 aactcttcaa acgcttcatc atcgacggct tcaaaccaat cggtcggcac aatatccaaa
     3721 ccgtaaagat aagcattgca ccatgtgtaa aaatcgctgc cgccgtcttc gttttcatac
     3781 agccacaaat cgggcagttt tttatccgac atcgcggcgg ttgtttccat cgccattgcc
     3841 aaaaccagcc gttcgatttc ggaacgttcg gcggcggtaa attgcgattc gtcgcccaac
     3901 acttcgggca gccagtcgag cggtgtcaat ttgtccggcc cgctcaacag cgccgtcata
     3961 aaaccttgaa cctcgtcgca acgcatcgtg ttgccttgtt cgcttttggc atccaacaat
     4021 tcgctcaacc gccgtttgga tgcttcggta aatttttggg aatccatcat tttccttttc
     4081 aaatgggttt tgcgccct
//
LOCUS       DAXIFD010000159         4074 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.159, whole genome shotgun sequence.
ACCESSION   DAXIFD010000159 DAXIFD010000000
VERSION     DAXIFD010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.159"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(227..1528)
                     /locus_tag="ACFOCN_001775"
     CDS             complement(227..1528)
                     /locus_tag="ACFOCN_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding domain-containing protein"
                     /protein_id="HFC6970880.1"
                     /translation="MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCTAVAEGLPV
                     IGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAV
                     IADESHTFADKLADNALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYRE
                     VWLDRFSKQPPAGPNLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRF
                     LEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFF
                     LQLALQHTDDGPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSA
                     DFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAASYRTDPDGT
                     FIKRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP"
     gene            complement(1518..2429)
                     /locus_tag="ACFOCN_001776"
     CDS             complement(1518..2429)
                     /locus_tag="ACFOCN_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6970881.1"
                     /translation="MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTV
                     QAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWF
                     AGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAE
                     IEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPV
                     IRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGSLVRLLPEYTVPTDRLNAVYADRA
                     FLSAKVRSFIDFLNEKIASRKGCRNAV"
     gene            2537..2935
                     /locus_tag="ACFOCN_001777"
     CDS             2537..2935
                     /locus_tag="ACFOCN_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6970882.1"
                     /translation="MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSP
                     GGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGES
                     AVLFCFVFLYIAAAGGGAWSLDRLFFKRKA"
     gene            2984..3589
                     /locus_tag="ACFOCN_001778"
     CDS             2984..3589
                     /locus_tag="ACFOCN_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6970883.1"
                     /translation="MTRQSLQQAAESRRSIYSLNKNLPVGKDEIVQIVEHAVLHTPSS
                     FNSQSARVVVLFGEEHDKVWQFVEDALCAVVPADSFEPTAQKLNLFKAGAATILFYED
                     QNVVKGLQEQFPAYAANFPVWADQANAMVQYAVWTTLAAVGVGANLQHYNPLPDAAIA
                     KAWNIPENWLLRAQMVIGGIEGAAGEKTFEPVAERLKVFGA"
     gene            3775..>4074
                     /locus_tag="ACFOCN_001779"
     CDS             3775..>4074
                     /locus_tag="ACFOCN_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6970884.1"
                     /translation="MKISFHLALLPTLIIASFPVAAADTQDNGEHYTATLPTVSVVGQ
                     SDTSVLKGYINYDEAAVTRNGQLIKETPQTIDTLNIQKNKNYGTNDLSSILEGNAG"
BASE COUNT          846 a         1014 c         1244 g          970 t
ORIGIN      
        1 atccaacggg catcgctgtc cttactcggt gtggtttggc cgttgatttg tcctttttca
       61 tcgacttcta tttttgccgg cgatgggaac ggtgtcggct tgggtggcgg tgatttgggc
      121 atacctgatg attgaaagtg aaaaaaacgg aagatattga gtcattcgga cgcaatgccg
      181 tctgaaacgg aagttcagac ggcatttgtt ttaggttccg taccgcttag ggaataccgg
      241 cgacaggata ggcgggatag ccgtgggtat cgaccgaaca ggcaaaccgc caaggcgtgt
      301 ggacggtgtc ggcggacagg tgggcgagtt cgggaatgtg ccgtttgata aaagtaccgt
      361 ccgggtcggt acggtatgag gcggcggcaa tgtcggggca ggtgtgccgt gaggcggcaa
      421 gccaccagtt gccttggttg attgccgcat cgaaatcggt cagctgccgg gcaaaccata
      481 tctcgccttc gcggcggggg aggtttaaaa cgtggcagaa aaaatccgcg ctcaagcgtc
      541 tcagggcggg gtggaggctg ccggttttgt gcaaacagcg catcgcggca tcgataatcg
      601 gaatgccggt ctggccctgc tgccaaagcg tcaggcgcag ggtgtgttcc ggattgccgt
      661 ctgaagggcc gtcatccgtg tgctgcaagg caagttgaag gaaaaaatcg cggcggatga
      721 tgttgtccgc ccacgcgttc agacggcgtt cgaggctttc ccgcgcgagc aggcgcggcg
      781 agatgcagcc ggcactcaaa tacgcgccca tcagcgaagt gtgtttgcgc gaggggaaat
      841 cctttaaaac ggagtaggaa tccgcctgtt cgagaaaccg ccgccactgc cgccaagccg
      901 ccgtttcgcc gctgttttgc ggcaggaaga tgccgtctga aagggcggca ggcggcgggg
      961 cggaaaggtt ttcggggaag ggttggcggt atgccgcgaa taggttcgga ccggcggggg
     1021 gctgcttgga aaagcggtcg agccatactt cgcggtagcg gtcgaaatcg gtgtgtgccg
     1081 tgccgccgtc gggtatcagg tcggttttgc cgaaaacggc gcggtcattg acgaaggtta
     1141 acgcgatgcc gtgtttgtcc aattcatgcc aaagggcgtt gtcggcgagt ttgtcggcaa
     1201 aagtatggga ttcgtcggcg atgacggcgc ggatattgag gcggacggcg agccggacga
     1261 gctcggcagg cgatgccgcc gtgtagagcg ggatgccgcg ccctgcaagc ccttgggcga
     1321 gttcggcggc ggattggcgg tagaacgcgg cgcggcgagg gttgtctgtt tcggcatcgt
     1381 caatccaaat accgataacg ggcaaacctt cggcaacggc ggtgcataag gcggcgttgt
     1441 cgcggatgcg gaggttttgg cggaaccaga cgagcgtgtg tgcggcgcac gtgtccgcat
     1501 aaagggggcg ggcggtttca gacggcattt cggcagcctt tcctgctggc gattttttcg
     1561 ttcagaaaat cgatgaagct gcggactttc gcgcttaaga acgccctgtc cgcataaacg
     1621 gcattcaggc ggtcggtcgg gacggtatat tcgggcagca gcctcaccag cgagccgcag
     1681 cgcaaatcgt gttccgccgc ccaaagcggc tgataaccga tgcacgcgcc cgccttaatc
     1741 atttcgcgca tcatcagcgt gttgtcggta cggatgacgg gggtcagttc aagccggtat
     1801 tttttgccgt ccgatttgcg ggtgaggtcg agtttctgct ggttggtgta ggtcggcagg
     1861 acggcgggca gccccgccac ttcttccggc gtttccggta cgccgttgcg cctcaggaaa
     1921 tcgggcgagg cgagcagggc aaattcgatt tccgccagcg ggcgcgcaat cagcgacggg
     1981 gacagggttt gggaaacgcg caacgccaaa tccacgcctt cggcaatcaa atcgacgtgg
     2041 cggttgtcca aaatcagttc taatgtcact tcgggataac gttcgcggta ttccgccagc
     2101 cagttgcata tctggctgcc ggcaaaccac agtggcatcg ttacgcgcag cagcccctgc
     2161 ggtttttccg tccccccggc ggctttttgc gcggcatcgt cgagcgtgtc gagcgcgtaa
     2221 ctgcattgcc ggtagtattc ttccccggct tcggtcaggc tgaggttgcg gctgttgcgg
     2281 tgcaggagtt tggcttggac ggtgttttcc aagtggctga cgtgtttgct tgccattgcg
     2341 gtggagatgc cgagcgcgtc ggcggcgcgg gtgaagccgc cgctttggac gacttggcgg
     2401 aaaaccttga ggctgaacag ggtgtccata ttttcttgtg tggaaaagtt gtatcaataa
     2461 aagcagtata tatttgaaaa ggggaaacat ctatactcta ccgcctgaaa tgaagacaaa
     2521 tatcaaagga gcttttatgt ccgattgctg caaccgtatc caaccggttt tgctttctgt
     2581 tttgcgtatc gtaaccgctt acctgttttt gttgcacggt acgtcgaaaa tcttcgcctt
     2641 ccccattgaa atgggcagcg gttcgcccgg cgggctgttg ctgcttgccg gtattttaga
     2701 aattgtcggc ggcattttgc tggtgttggg cctgtttgcg cgccctgccg cgtttgtttt
     2761 gtccggccag atggcggttg cctattttat ggcgcacgct tccggaaatg ctttgttccc
     2821 gattgccaac ggcggcgagt ccgcagtgct gttctgcttc gtattcctct atatcgcggc
     2881 ggcgggcggc ggagcatggt cgctggacag gctgtttttc aagcgtaaag cctgaatcag
     2941 actgcctaaa gtgtattttg ttgaatgttt ttgaggaaaa gaaatgaccc gtcaatctct
     3001 gcaacaggct gccgaaagcc gccgttccat ttattcgtta aataaaaatc tgcccgtcgg
     3061 caaagatgaa atcgtccaaa tcgtcgaaca cgccgttttg cacacacctt cttcgttcaa
     3121 ttcccaatct gcccgtgtgg tcgtgctgtt tggcgaagag catgataagg tgtggcaatt
     3181 tgtcgaagac gcgctgtgtg ccgtcgtgcc tgccgacagt tttgaaccga ccgcgcaaaa
     3241 attgaacctg tttaaggcgg gtgcggcaac tattttgttt tatgaagatc aaaatgtcgt
     3301 caaaggtttg caggagcagt tccctgctta tgccgccaac tttcccgttt gggcggacca
     3361 ggcgaacgcg atggtgcagt atgccgtttg gacgacactt gccgcggtcg gcgtaggtgc
     3421 aaacctgcaa cattacaatc ccttgcccga tgcggcgatt gccaaagcgt ggaatatccc
     3481 cgaaaactgg ttgttgcgcg cacaaatggt tatcggcggt attgaagggg cggcaggtga
     3541 aaagaccttt gaaccagttg cagaacgttt gaaagtgttc ggcgcataat ttcgcggtca
     3601 aaaaaatgcc gtctgaaccc tgttcagacg gcatttttca gtatcaggcg gcgagttttc
     3661 cgcattctga gacctttgtt tacaaatatc atgttcaata tagttaaaag aaattattct
     3721 catttcctcc gtgaggcaat ataattcggt tgttttgtta aattgagtat aaaaatgaaa
     3781 atatcatttc atttagcttt attacccacg ctgattattg cttccttccc tgttgctgcc
     3841 gccgatacgc aggacaatgg tgaacattac accgccactc tgcccaccgt ttccgtggtc
     3901 ggacagtccg acaccagcgt actcaaaggc tacatcaact acgacgaagc cgccgttacc
     3961 cgcaacggac agctcatcaa agaaacgccg caaaccatcg atacgctcaa tatccagaaa
     4021 aacaaaaatt acggtacgaa cgatttgagt tccatcctcg aaggcaatgc cggc
//
LOCUS       DAXIFD010000160         4036 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.160, whole genome shotgun sequence.
ACCESSION   DAXIFD010000160 DAXIFD010000000
VERSION     DAXIFD010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4036
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.160"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1941
                     /locus_tag="ACFOCN_001780"
     CDS             <1..1941
                     /locus_tag="ACFOCN_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HFC6970885.1"
                     /translation="AVDYVYDNSKLTNEQIDRLKKLRDKSSEYWKQETYLLKPTNGSS
                     QNSLKVPALYSKTHQFKNINNSKKISFYDKEYTEDYLVGFARGFGVEKRNGEEEKTLQ
                     QYFKDCVNTGNSNNDKCEQPSFENSGPRLIKSDIFALAPQIKNSHINSEILSVGNYIE
                     WLRPTLNKLPSWQEHLYSGLDPFHYIEVTDNSHVIGQTISLDEFRLENSLWEPRWDSD
                     VGELKTTNADIRFNTKSESLLVKEDYAGGARFRFAYDLKDKVSETPVLTFEKNITGTS
                     DIIFENPIDDLKSLDGHQIIKVNGTADKHAFRLSGKHQKGIYTLSLQQRPEGFFTKVQ
                     ERDDISIYAQQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRVIDGHSNQWVQGKTA
                     PVEGYRKGVQLGGEVFTWQNESNQLSVGLMSGQAEQRSTFRNPDTDNLTTGNVKGFGA
                     GIYATWHQLQDKQTGAYADSWVQYQRFRHRINTEDATERFTSKGITASIEAGYNALLA
                     EHFTKKGNSLRVYLQPQAQLTYLGVNGKFSDSENAHVNLLGSRQLQTRVGVQAKAQFS
                     LYKNIAIEPFAAVNALYHNKPFGVEIDGERRVINNKTAIESQLGVAVKIKSHLTLQAS
                     FNRQTSKYHQAKQGALNLQWTF"
     gene            complement(2122..3489)
                     /locus_tag="ACFOCN_001781"
     CDS             complement(2122..3489)
                     /locus_tag="ACFOCN_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HFC6970886.1"
                     /translation="MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRS
                     VESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCIT
                     VEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIG
                     LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAW
                     VGIPDIESAVRLLTETQAHFAERLCSFELIGRFAAELSSEFSKFPLPTHSEWHILLEL
                     TDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENISASQRKLGTSIKHD
                     IAVPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYEN
                     DINDAVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNP
                     GKLLP"
     gene            complement(3599..3820)
                     /locus_tag="ACFOCN_001782"
     CDS             complement(3599..3820)
                     /locus_tag="ACFOCN_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970887.1"
                     /translation="MKKSLFAAALLSLVLAACGGEKAAEAPATEAPAAEAAATEAPAA
                     EAPAAEAAATEAPAAEAPAAEAPAAEAAK"
BASE COUNT         1162 a          853 c          978 g         1043 t
ORIGIN      
        1 gctgttgatt acgtttacga caattctaaa ttaacaaatg agcaaattga tcgcttaaaa
       61 aaacttagag ataaaagcag cgaatactgg aaacaagaaa cttatcttct aaaaccgacg
      121 aatggtagct ctcagaactc tctcaaagtt cccgcactat actctaaaac acaccaattc
      181 aaaaacatca acaactcaaa aaagatttct ttttatgaca aggaatacac tgaagattac
      241 cttgttggct tcgcccgagg tttcggggtt gaaaaaagaa atggggaaga agaaaaaaca
      301 ctccagcaat attttaagga ctgtgtaaat actgggaatt ccaataatga taagtgtgaa
      361 caaccatcct tcgaaaactc tggcccaaga ttaataaaga gcgatatttt cgccttagct
      421 ccacaaataa aaaatagcca tatcaacagc gaaattttat ctgtaggtaa ttatatcgaa
      481 tggcttcgcc caacacttaa taagcttcct agttggcaag agcatctcta ttctggttta
      541 gatccattcc actatattga ggttacagac aactcacacg ttatcggaca aacaattagt
      601 ttggatgaat tccgcttaga aaattctctc tgggaacccc gttgggattc tgatgttggg
      661 gaattaaaaa caacgaatgc agacatccgt tttaatacta aaagtgaaag tttactcgta
      721 aaagaagatt atgctggcgg agctcgtttt cgttttgctt acgatctaaa agataaagtc
      781 tctgaaacac cagttttaac ttttgaaaaa aatataactg gcacttccga catcatcttc
      841 gaaaatccaa tagacgattt aaaaagtctc gacgggcatc aaattatcaa agtaaatggc
      901 acagcagata aacacgcatt ccgtctttct ggcaaacacc aaaagggaat ttatacgctt
      961 tctttacaac aacgcccaga aggctttttt accaaagtgc aagaacgcga tgatatttcg
     1021 atttatgcac aacaggctca agccgccaat accttattcg ccttgcgttt gaacgacaaa
     1081 aacagcgata tttttgaccg cactttacca cgcaaaggct tgtggttgcg tgtgattgac
     1141 ggacattcca accaatgggt gcaaggcaaa acagcacctg tagaaggcta tcgtaaaggt
     1201 gtgcaactcg gtggcgaagt attcacatgg caaaacgaaa gtaatcaact ttccgttggc
     1261 ttaatgagcg gacaagcaga acaacgcagc actttccgca atccagatac agacaatctt
     1321 acaacgggaa atgtgaaagg ctttggggcg ggcatttatg ccacttggca tcagcttcag
     1381 gacaaacaga caggtgcgta tgcggatagc tgggtacaat atcaacgctt ccgccaccgc
     1441 attaacactg aagatgctac agaacgtttt acttcaaaag gtattaccgc ctcaattgaa
     1501 gcgggttaca atgctttatt ggcagaacac ttcactaaaa agggcaacag ccttcgtgtt
     1561 tacctacaac cacaggcaca attgacttat ttgggggtaa acggaaaatt cagcgatagc
     1621 gaaaatgccc acgtgaattt acttggctcc cgccaattac aaactcgggt tggcgttcaa
     1681 gctaaagctc aattttcact ctataaaaat atcgctattg aacctttcgc cgctgtgaac
     1741 gcgctttacc acaacaaacc tttcggtgtg gaaatagacg gagagcgtcg agtgataaac
     1801 aataagacgg caattgagag ccaattaggt gtagcagtga aaatcaaatc tcacttaact
     1861 ttacaagcct cattcaaccg ccaaacaagc aaatatcatc aggctaaaca aggtgcgttg
     1921 aatttgcagt ggacgtttta agttaagttg taacaaaata aaatcggcag ggaaattcac
     1981 tgccgatttt tttattttaa aaatgcggtc atttttcgtg tcatttccac caatttttta
     2041 ccgcactcac gagctcgcgc taaaccgaca atcggatcta ttgtcccttt ctttgttgtg
     2101 tatgcaaatc agaaatgccg gttacggaag cagtttgccc ggattcataa tgttatatgg
     2161 atcaaggtgt tgtttgatgc ttttcatcag ggcgatttcg gcaggcgtgc gtactttgtc
     2221 cagccactgt tttttgatga tacctatgcc gtgttcggcg gcaatcgtgc cgttgcaggc
     2281 aagaacgttg cgataaactg cgtcgttgat gtcgttttcg taacgataga cttcattgct
     2341 gaggatttcg ggcaggaaag tattgtagtg caggctgccg tcgccaagat gtccgaagca
     2401 gacgatttgt atgcctttaa aattctgttc caaatctttg gcgcaccggc ggacaaagtc
     2461 ggcaacgcgt ccgataggaa cggcaatatc gtgtttgatg ctggtgccca gtttgcgttg
     2521 ggaggcggag atgttttcgc gcaatgccca catatggata cgttcttgtt cgctttgtgc
     2581 caatacgctg tcggtaaatc cttttttata aagaaattcg acgagccgat catcaagatt
     2641 gctgtcgggt aatgagtcgg tcaactcaag taaaatatgc cattctgaat gtgtcggcag
     2701 ggggaatttg ctgaattcgg aagacaactc ggcggcaaaa cggccgatca gctcaaaact
     2761 gcataggcgt tcggcaaagt gagcttgggt ttcggtcagc aggcggacgg cggattcgat
     2821 gtcgggtatg ccgacccatg ccgttgcctt gtccgaggga cgggcaaaaa gcttgagtgt
     2881 ggcggcagtg atgatgccca gtgtgccttc gctgccgata aacagatggc gcaggtcgta
     2941 gccggtggtg tttttatgca ggggatggag atgggaaacc agctcgccgt tggggaggac
     3001 gacttccaaa ccgataatca ggtcgcgcat cgtgccgtaa cgcaatacgt tcaaacctcc
     3061 ggcattgcag gcgatgttgc cgccgatttg acaggagcct tcgctggcga gactgagtgg
     3121 gaacagcctg tttgaggctt cggctgcctg ttggacggtt tggagtacgg aacctgcttc
     3181 gacggttatg cagttgtctg acaaattgat gctgcggatg cggttgagtt tggaaaggtt
     3241 cagcaatacg ccgttttccg atactgccgc gccgcacaaa ccggtattgc cgccttgcgg
     3301 cgtaaccgga atacggtgtt cgtaacaaaa acgcataatg gtttgcacgc tttcaacgct
     3361 gcgcggctgc aaaatgatgt ctggtgcaga cgtaaagcgg ttgcgctggt cttttaaaag
     3421 cgtcggagaa agttcggcaa tttcatctgc cggcaggagt cgggaaaatt cggtatgaag
     3481 gtcaggcatg tttgtcggaa gggtagggag aagattgagg aagggaatct gatgccgtct
     3541 gaaaaatcaa aaaagcagga tactgaacgt atcctgcttt tttgcaagcg gaaaatgctt
     3601 attttgcagc ttcggcagca ggagcttcgg cagcaggagc ttcagcggca ggtgcttcgg
     3661 tagcggcagc ttcagcagcg ggagcttcgg cggcaggtgc ttcagtagcg gcagcttcgg
     3721 cggcaggtgc ttcggtagcg ggagcttcag cggctttttc accgccgcag gctgccagga
     3781 ccaaagacaa caaagcagcg gcaaacaggg attttttcat tttagtaacc tttagaacca
     3841 atttaaatta ttgaaacaaa taggtcttta tcgaccatac tacaaaccgg gttggaaatt
     3901 catcgctgaa tttgcgtaat tatgcactat ggaataaggg attgcaatgt cgtacagatg
     3961 ggaaaaaggt ttgaatgaaa agttttctgg cgggcggatt gataaatcct gtaaaacggt
     4021 tttgctgtta aaaatt
//
LOCUS       DAXIFD010000161         4022 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.161, whole genome shotgun sequence.
ACCESSION   DAXIFD010000161 DAXIFD010000000
VERSION     DAXIFD010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4022
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.161"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(214..285)
                     /locus_tag="ACFOCN_001783"
     tRNA            complement(214..285)
                     /locus_tag="ACFOCN_001783"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(250..252),aa:Arg,seq:cct)
     gene            complement(305..751)
                     /locus_tag="ACFOCN_001784"
     CDS             complement(305..751)
                     /locus_tag="ACFOCN_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HFC6970888.1"
                     /translation="MNFSFVPLFLVTLILLGVVSNNNSITISATILLLMQQTALVQFV
                     PLVEKHGLNLGIILLTIGVLSPLVSGKAQVPPVAEFLNFKMISAVFIGIFVAWLAGRG
                     VPLMGQQPVLITGLLIGTVIGVAFMGGIPVGPLIAAGILSFVVGKG"
     gene            complement(756..1730)
                     /gene="ispB"
                     /locus_tag="ACFOCN_001785"
     CDS             complement(756..1730)
                     /gene="ispB"
                     /locus_tag="ACFOCN_001785"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HFC6970889.1"
                     /translation="MLENLPYFQRHLPEDLAKVNEVINRAVQSDVALISQIGTYIISA
                     GGKRLRPIMTILAGKAVGYDDGKLYSLAAMVEFIHTSTLLHDDVVDESDLRRGRATAN
                     NLFGNAAAVLVGDFLYTRAFQLMVDSDSMRVLEVMADATNIIAEGEVMQLMNIGNTDI
                     TEEQYIQVIQYKTAKLFEAAAQVGAILGKASPEHERALKDYGMYVGTAFQIIDDVLDY
                     SGETEETGKNVGDDLAEGKPTLPLIYLMRQGSEQVANDVRTALENADRSYFEKIHDYV
                     VRSDALAYSIGEARKAVDCAVAALDALPDSEVKDAMIQLAKESLVRVS"
     gene            1954..2262
                     /gene="rplU"
                     /locus_tag="ACFOCN_001786"
     CDS             1954..2262
                     /gene="rplU"
                     /locus_tag="ACFOCN_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HFC6970890.1"
                     /translation="MYAVVKTGGKQYKVSVGEKLKVEQIPAELDSQIELTEVLMIADG
                     ESVKVGAPFIEGAKVTAKVVAHGRGEKVRIFKMRRRKHYQKRQGHRQNFTQIEIVAIA
                     "
     gene            2287..2559
                     /gene="rpmA"
                     /locus_tag="ACFOCN_001787"
     CDS             2287..2559
                     /gene="rpmA"
                     /locus_tag="ACFOCN_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HFC6970891.1"
                     /translation="MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTK
                     FHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE"
     gene            2794..3978
                     /gene="ubiM"
                     /locus_tag="ACFOCN_001788"
     CDS             2794..3978
                     /gene="ubiM"
                     /locus_tag="ACFOCN_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-demethoxyubiquinol-8 5-hydroxylase UbiM"
                     /protein_id="HFC6970892.1"
                     /translation="MSLHSDILVVGAGPAGLSFAAELAGSGLKVTLIERSPLTVLQNP
                     PYDGREIALTHFSREIMQRLGMWDKIPENEIYPLRDAKVLNGRSDYQLHFPQPTEARG
                     EPADCLGYLISNHNIRRAAYEVVSQLDNVSILTDTVVKEVKTSDNEAQVILENGKILT
                     ARLLLAADSRFSQTRRQLGISSDMHDYSRTMFVCRMKHTLSNQHTAYECFHYGRTIAL
                     LPLEEHLTNTVITVDTDKINSVQNLSPEELAASVKEQLKGRLGDMELVSSIHHYPLVG
                     MIAKRFYGKRSALIGDAAVGMHPVTAHGFNLGLSSADILAKLILEAEQRGQDIGASSL
                     LEKYSNKHMLHAHPLYHGTNMMLKLFTNETAPAKLLRGLVLRAGNNFPPLKKLITKQL
                     TG"
BASE COUNT         1150 a         1110 c          874 g          888 t
ORIGIN      
        1 aatttaatcc actatatcat aaaacaacag atttccaagc cggaacatct tttacgaagc
       61 ctgaaaatca tttcatgatt ctaccgtcct aaaggtcggt ttttcaagca ggaagaaaaa
      121 gttttcagat ggcaaaaaag ccctccaaca ctgaaaggcc ttatatcgga aacttcccgc
      181 aacacgggaa acagacaaat gcaaatcgtc aaacctcgcc aacaggaatc gaacctgtat
      241 tttacgctta ggaggcatac gttctatccg ttgaactatg gcgagccgaa atgaaaagga
      301 gattttaacc ctttccgacg acaaaagaca agatgccggc cgcaatcagc ggcccgacag
      361 ggataccgcc cataaatgcc accccgataa ccgtcccgat taacagccct gtaattaaaa
      421 caggctgctg tcccatcaaa ggcacgccgc gtcccgccag ccaagccacg aaaataccga
      481 taaaaacggc ggatatcatt ttaaaattca aaaattcggc aacgggagga acctgcgcct
      541 ttcctgaaac caacggactc aaaaccccta tggtcaaaag aatgataccg agattcaacc
      601 catgcttctc gaccaacggg acaaactgta ccaatgccgt ctgctgcatc agcagcaata
      661 tggttgccga gatggtaatc gaattgttgt tgctgaccac ccccaacaga atcagcgtaa
      721 ccagaaacag gggaacaaaa ctgaaattca tcgcctcaag acaccctgac caaagattcc
      781 ttcgccagct gaatcatggc atccttcact tcgctgtcgg gcagggcatc caaggcggca
      841 acggcacaat cgactgcttt gcgcgcctcg cctattgaat atgccaaagc atccgaacgg
      901 acgacataat cgtggatttt ctcaaaatag ctgcgatctg cattttccaa agcagtacgc
      961 acatcgttcg caacctgttc ggaaccctga cgcatcagat aaatcaaagg caaagtcggt
     1021 tttccttccg ccaaatcgtc gccgacgttt ttgccggttt cttcggtttc gccagaatag
     1081 tccagcacat cgtcaataat ttggaatgcc gtaccgacat acataccgta gtctttcaac
     1141 gcccgttcgt gttcggggga agccttgccc aaaattgcgc cgacttgagc ggcagcttca
     1201 aacaattttg ccgttttata ttggatgact tggatatatt gttcttcggt aatgtccgta
     1261 ttgccgatgt tcatcagctg catgacttcg ccctcggcaa taatgttggt tgcatccgcc
     1321 atcacttcca aaacgcgcat actgtccgag tcaaccatca gttgaaaggc gcgcgtgtat
     1381 aaaaagtcgc caaccaacac tgccgccgca ttgccgaaca gattgtttgc cgttgcccgt
     1441 ccacggcgca aatcgctttc atcgacgaca tcgtcgtgca gcagcgtcga agtgtggata
     1501 aattcgacca tcgccgccag cgaatacagt ttcccgtcat cataaccgac cgccttaccc
     1561 gccaaaatcg tcataatcgg acgcaggcgt ttgccgcccg cgctgatgat atatgtaccg
     1621 atttgcgaaa tcagtgcgac atcggattgc accgcacggt tgatgacttc attgactttg
     1681 gcaaggtctt caggcagatg tcgctggaaa tagggcagat tttcgagcat ggcagactct
     1741 caggtttacg cttccatcaa acggcagata ccgcttgaaa gctgattcaa atagcgggca
     1801 attatatcag caaagccatc agggtacatc ttttcagacg gcatatggtt atccgaaccg
     1861 cgcaaacttt gacaaaacag gcaaataaca atacaatgcc gagttccgca caatggtgtg
     1921 cggatattaa ccataaccct tatggagttg agtatgtacg cggtcgtaaa aaccggcggc
     1981 aaacagtata aagtttccgt cggcgaaaaa ttgaaagtag aacagatacc agccgaactc
     2041 gacagccaaa tcgaactgac cgaagttttg atgattgctg acggcgaatc tgtaaaagtt
     2101 ggcgcaccct ttatcgaagg tgcaaaagta acggctaaag tagtggcaca cggtcgtggc
     2161 gaaaaagtcc gcatcttcaa aatgcgccgc cgcaaacact accaaaaacg ccaaggccac
     2221 cgccaaaatt tcacccaaat cgaaatcgtg gcaatcgcct aaccttaaaa cttaggagca
     2281 ttacaaatgg caagtaaaaa agcaggcggc agcacccgca acggtcgcga ttcagaagcc
     2341 aaacgcttgg gcgttaaagc ctacggcaac gagctgattc ccgcaggttc catcatcgta
     2401 cgccaacgcg gtaccaaatt ccacgcaggc gacaacgtag gcatgggcaa agatcacact
     2461 ttgttcgcca aagttgacgg ttatgttgaa ttcaaaacca aaggtgcgct gaaccgtaaa
     2521 actgtcagca tccgtcctta caccggttct gaagaataat ccaaccgata cctgaagccg
     2581 catcttttca cgatgcggct ttttacatac cccacacccg atttgataca cattaagctg
     2641 aaagtaaaaa tccgcataca tcctcccctg catatttctt caacagcggg ttttgatata
     2701 atcgcctatc tgttacagat agttcaaacg gcattcaaac ccttacaaat gccgtctgaa
     2761 atcatcggca tccgtctatg caaaggatat tttatgagtt tacacagcga catcctcgtc
     2821 gtcggcgcag gcccggcggg tttaagtttt gcagccgaac ttgccggcag cggtttgaaa
     2881 gttaccctga tcgaacgcag cccactgact gttctgcaaa atcctccata tgacggacgc
     2941 gaaatcgccc tgacccattt ttcccgcgaa atcatgcagc gtttgggtat gtgggacaaa
     3001 attcccgaaa acgaaatcta ccctttgcgc gatgccaaag tgctgaacgg acgttccgac
     3061 taccagctcc actttcccca accgactgaa gcgcgcggcg aacctgccga ctgtttgggc
     3121 tatctgattt ccaaccacaa tatccgccgc gccgcctatg aagtcgtatc acaactcgac
     3181 aatgtcagca ttctgaccga tacggttgtc aaagaagtca aaacatctga caacgaagca
     3241 caagtcattt tggaaaacgg caaaatcctg actgcacgcc tgcttttggc ggcagacagc
     3301 cgcttctcgc aaacccgtcg acaactcggt atctcctccg atatgcacga ttacagccga
     3361 accatgttcg tctgccgtat gaaacatacc ctttccaacc aacataccgc ttacgaatgc
     3421 ttccattacg gacgcaccat cgcactgctg ccgctggaag agcacctgac caataccgtc
     3481 attaccgtcg ataccgataa aatcaacagc gttcaaaacc tttcgcccga agaattggcg
     3541 gcaagcgtaa aagaacaact caagggtagg cttggcgaca tggaactggt cagcagcatc
     3601 caccattacc cccttgtcgg tatgattgcc aaacgtttct acggcaaacg cagcgcgctg
     3661 atcggcgatg cggcggtcgg tatgcaccct gtaacggcac acggcttcaa cttgggtctt
     3721 tccagcgcag atattctggc aaaactgata ctcgaagccg aacaacgcgg tcaggacatc
     3781 ggcgcatctt ccttgttgga aaaatacagc aacaaacata tgctgcacgc ccatccgctt
     3841 tatcacggaa ccaatatgat gctgaaactg tttaccaacg aaaccgcgcc ggcaaaactg
     3901 ctgcgcggtt tggtattgcg tgccggcaac aacttcccgc cgctgaaaaa gctgattacc
     3961 aaacaactga ccggttgaaa actgccgaaa tgccgtctga aacgtttcag acggcatttt
     4021 tg
//
LOCUS       DAXIFD010000162         3965 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.162, whole genome shotgun sequence.
ACCESSION   DAXIFD010000162 DAXIFD010000000
VERSION     DAXIFD010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.162"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..594)
                     /locus_tag="ACFOCN_001789"
                     /pseudo
     CDS             complement(1..594)
                     /locus_tag="ACFOCN_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222110.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
     gene            complement(603..1397)
                     /locus_tag="ACFOCN_001790"
     CDS             complement(603..1397)
                     /locus_tag="ACFOCN_001790"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HFC6970893.1"
                     /translation="MKAYLDLMRHVLDNGTDKSDRTGTGTRSVFGYQMRFDLGKGFPL
                     LTTKKLHLRSIIHELLWFLKGDTNIKYLKDNNVSIWDEWADENGDLGPVYGYQWRNWP
                     APDGRHIDQIANVLEQIKKNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLS
                     CQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAAL
                     QLEREPRALPVMKINPEVKDLFSFKFEDFELEGYDPHPHIKAAVSV"
     gene            1820..3154
                     /gene="gdhA"
                     /locus_tag="ACFOCN_001791"
     CDS             1820..3154
                     /gene="gdhA"
                     /locus_tag="ACFOCN_001791"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016639 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HFC6970894.1"
                     /translation="MTDLNTLFANLKQRNPNQEPFHQAVEEVFMSLDPFLAKNPKYTQ
                     QSLLERIVEPERVVMFRVTWQDDKGQVQVNRGYRVQMSSAIGPYKGGLRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMTELYRHIGADTD
                     VPAGDIGVGGREIGYLFGQYKKIRNEFSSVLTGKGLEWGGSLIRPEATGYGCVYFAQA
                     MLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFPDSGMTEAQ
                     LAALIELKEVRRERVATYAKEQGLQYFENQKPWGVAAEIALPCATQNELDEEAAKTLL
                     ANGCYVVAEGANMPSTLGAVEQFIKAGILYAPGKASNAGGVATSGLEMSQNAIRLSWT
                     REEVDQRLFGIMQSIHESCLKYGKVGDTVNYVNGANIAGFVKVADAMLAQGF"
     gene            3296..3670
                     /locus_tag="ACFOCN_001792"
     CDS             3296..3670
                     /locus_tag="ACFOCN_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970895.1"
                     /translation="MIMDQYYMELKNKLSNRPILLDNTNDFLFVLVNTVKAMIENTDK
                     SQLSELDKILDGVTSQELKLAYDFCQGKFGQAGFSYRRHPNYFYLSSLIATFPEFELS
                     KADRDYLKGIINFDNYLLYELD"
     gene            3714..>3965
                     /locus_tag="ACFOCN_001793"
     CDS             3714..>3965
                     /locus_tag="ACFOCN_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone acetyltransferase"
                     /protein_id="HFC6970896.1"
                     /translation="MIELKLVDESSFQAVLDLKISEADERARFVAPNVRSLADAWLYR
                     ENEDVFPRAIYWDKQVVGFLLLEIDKDEAEYFIWRIMIGQ"
BASE COUNT         1074 a         1032 c          939 g          920 t
ORIGIN      
        1 ccttgcgcga tgccgttcaa ggacaaaccc ataccctttt cggcaaaacg gatttcacgg
       61 tcgtcaaacg agactttgcc gaagccgacc cgtttcaggg cttccttcac gctgttttga
      121 ggaggcggcg tttccgcatc gggacgggcg gcaaaataat cggcatacag tttccacaac
      181 gcctgcactg tcggatcgaa cgcgccgtcc gtcagcgcgt gaatatcgcg gcacaggctc
      241 aacagttcca aaaaatccgc cgacggcgaa gtcagataac cgtccctgtt caggcggctg
      301 atcaggctgt cttcacggta aaggctgaac aattttttcc aaacgcgcca cttccgccaa
      361 aaccttgttg accaaatccg ccgcctgtct gtcgtccaca ccgaacaggc gcagctccgc
      421 accggaaccc agcgcgacac ctttccagaa gaacacattt tcattgcgtt tttcatcttt
      481 attgcgtttt tcatcatcgg cggcaaaagg attcggcagg aaagaaaccg ccgcgcccgc
      541 cgccgcaacg gcggcaactg tcaaaaaacg cctgcgcccg aaatgcctgc ccataccgcc
      601 tcctaaaccg acactgccgc cttgatgtgc ggatgggggt cgtaaccttc caactcgaaa
      661 tcttcaaact tgaaggaaaa caaatctttg acttcaggat tgattttcat cactggcaag
      721 gcgcgcggtt cgcgttccaa ctgcaatgcg gcctgctcga aatggttgcg gtacaaatgc
      781 gcgtcgccaa acgtatggac aaactcgccc gcctccaatc cgcacacttg cgccatcatc
      841 atggtcaaca atgcgtagct ggcaatatta aacggcacac caaggaaaat atctgcacta
      901 cgctggtaaa gctggcagga cagtttgccg tcggcaacgt aaaactgaaa cagcgcgtgg
      961 cagggcggca aggccatttc atcgaccaaa gccggattcc acgccgatac aatcaggcgg
     1021 cgcgagtcgg gattcttctt gatttgttcc agcacattgg cgatttggtc gatatgcctg
     1081 ccgtcgggcg cgggccagtt acgccactgg tagccgtaaa ccgggcctaa gtcgccgttt
     1141 tcgtccgccc actcgtccca aatggaaaca ttgttgtcct ttaggtattt gatattggta
     1201 tcgcctttga gaaaccaaag cagctcgtgg ataatcgagc gcaaatgcag ctttttggtc
     1261 gtcagcagcg gaaaaccttt gcccaagtca aaacgcatct gataaccgaa tacggagcgc
     1321 gtgcccgtac cggtgcggtc tgatttgtcc gtaccgttgt cgaggacgtg gcgcatcaag
     1381 tccaaatagg ctttcatagc agtctttcat caaattaaac ggcgcatatt gtaacatttc
     1441 cggccaacgc ccgagtccgg acaaacgcac acgccgcccc gccggacgat aaaaacgcag
     1501 atacgggcag gcaggattgt tggcaatttc agtccttttc cacagtaaaa cccggtggga
     1561 aaacaaaatt accttgattg gaatcaaaaa atctagttta attacttaga ataaaatttc
     1621 aataatattt ttatttacga aattaattta tgattattga ttgattatcg gcaacaaaca
     1681 tcaaacatcg aaaatatgga aaaaataatg tcaacaattt ttgccaaatc gggcttggca
     1741 tcagaaaaaa ataggtttat attcccacct acaaatttgt tttcccatta gtacactatc
     1801 aaccaaaagg agtatccgaa tgactgacct gaacaccctg tttgccaacc tcaaacaacg
     1861 caatcccaat caggagccgt tccatcaggc ggttgaagaa gtcttcatga gtctcgatcc
     1921 gtttttggca aaaaatccga aatacaccca gcaaagcctg ctggaacgca tcgtcgaacc
     1981 cgaacgcgtc gtcatgttcc gcgtaacctg gcaggacgat aaagggcaag tccaagtcaa
     2041 ccggggctac cgcgtgcaaa tgagttccgc catcggtcct tacaaaggcg gcctgcgctt
     2101 ccatccgacc gtcgatttgg gcgtattgaa attcctcgct tttgaacaag tgttcaaaaa
     2161 cgccttgacc accctgccta tgggcggcgg caaaggcggt tccgacttcg accccaaagg
     2221 caaatccgat gccgaagtaa tgcgcttctg ccaagccttt atgaccgaac tctaccgcca
     2281 catcggcgcg gacaccgatg ttccggccgg cgacatcggc gtaggcgggc gcgaaatcgg
     2341 ctacctgttc ggacaataca aaaaaatccg caacgagttt tcttccgtcc tgaccggcaa
     2401 aggtttggaa tggggcggca gcctcatccg tcccgaagcg accggctacg gctgcgtcta
     2461 tttcgcccaa gcgatgctgc aaacccgcaa cgatagtttt gaaggcaaac gcgtcctgat
     2521 ttccggttcc ggcaacgtgg cgcaatacgc cgccgaaaaa gccatccaac tgggcgcgaa
     2581 agtgctgacc gtttccgact ccaacggctt cgtcctcttc cccgacagcg gtatgaccga
     2641 agcgcaactc gccgccttga tcgaattgaa agaagtccgc cgcgaacgcg ttgccaccta
     2701 cgccaaagag caaggtctgc aatactttga aaaccaaaaa ccgtggggcg tcgccgccga
     2761 aatcgccctg ccctgcgcga cccagaacga attggacgaa gaagccgcca aaaccctgtt
     2821 ggcaaacggc tgctacgtcg ttgccgaagg tgcgaatatg ccgtcgactt tgggcgcggt
     2881 cgagcaattt atcaaagccg gcatcctcta cgccccggga aaagcctcca atgccggcgg
     2941 cgtagcaact tcaggtttgg aaatgagcca aaacgccatc cgcctgtctt ggactcgtga
     3001 agaagtcgac caacgcctgt tcggcatcat gcaaagcatc cacgaatcct gtctgaaata
     3061 cggcaaagtc ggcgacacag taaactacgt caatggtgcg aacattgccg gtttcgtcaa
     3121 agttgccgat gcgatgctgg cgcaaggctt ctaagcaaac gccgccgctc cgcaaacaaa
     3181 atgccgtccg aaccgcaaat gctgttcaga cggcatttca ttatccgccc gttcgaatcg
     3241 ggtgatacta tttgtatcca gaattgttgg atagtttggg agtggagagg aagaaatgat
     3301 tatggaccaa tactatatgg agttaaagaa taagttatct aacagaccaa tcctactgga
     3361 taatactaat gattttcttt ttgttttagt aaatacagtg aaagctatga tagaaaatac
     3421 tgataaaagt cagctttcag agttagataa aattttagac ggtgtcacaa gtcaagaatt
     3481 gaaacttgcc tatgattttt gtcaagggaa attcggtcaa gcaggttttt cttatcgtag
     3541 gcacccgaat tatttttatt tgtccagttt aattgcgact tttccagaat ttgagttgtc
     3601 taaagcagac cgagattacc tcaaaggaat cataaatttt gataactacc ttttatatga
     3661 gttagattag tctttaatca cctcaaaacc ctatttattc aaaaggagaa aaaatgattg
     3721 agctgaaatt agtagatgag agcagttttc aggcagtgct ggatttgaaa atatctgaag
     3781 ctgatgaacg agcacgtttt gtggctccaa atgtacgctc tttagctgac gcatggctct
     3841 accgggaaaa tgaagatgtg tttccgaggg caatctattg ggataagcaa gtggttggct
     3901 ttctcctgct ggaaatagac aaggatgaag cagaatactt tatctggcgg ataatgattg
     3961 gtcag
//
LOCUS       DAXIFD010000163         3912 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.163, whole genome shotgun sequence.
ACCESSION   DAXIFD010000163 DAXIFD010000000
VERSION     DAXIFD010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.163"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            362..2143
                     /locus_tag="ACFOCN_001794"
     CDS             362..2143
                     /locus_tag="ACFOCN_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HFC6970897.1"
                     /translation="MPYFALFDDAVSGRAKRYQNHVESRFFRPEELDALDSALQKGWQ
                     KGLHSVLFADYGFGLPLTGVESERGGNLALHWFADCADTDAENWLARHSDGLPAGIST
                     PQSSVSEADYLDHIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVSLYRRLRQPVPYAV
                     LSHLPDAQGQSAWTLCFSPELFLKIGSDGTISTEPMKGTAPILGDGQDERRAAELQAD
                     PKNRAENVMIVDLLRNDLGKIAQTGTVCVPEPFKVSRFGSVWQMTSTIQAQALPHTSF
                     ADILRAAFPCGSITGAPKKMSMQIIESLEAEARGLYTGSIGYLNPCSGGLGFEGTFNV
                     VIRTLSLTPLSDGIYQGVYGVGSGIVIDSDPAAEYRECGWKARFLNELRPDFGIFETL
                     RVENGRCALLDRHLCRLKTSAQALNLPLPDGCENQIKQYIARLPDGAFRIKALLASDG
                     ISLSRAVLNRLTDKQRVIISPAVLPAQNYLRRFKTTCRALFDQAWQTAETQGAFDSLF
                     FNSDGILLEGGRSNVFVKHRGQWLTPSLDLDILNGIMRQAVLDEPQKYLQTNQVIETH
                     ITQKTLQEAEEIRLSNALRGVFAAALA"
     gene            complement(2202..3719)
                     /locus_tag="ACFOCN_001795"
     CDS             complement(2202..3719)
                     /locus_tag="ACFOCN_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6970898.1"
                     /translation="MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALLQVQRSVSDK
                     WAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYD
                     AVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERH
                     FAEAEKLDLPAPVLENVGRFRKKAEGLTGWRFSGGISPAVNRNANNAAPQYCRQNGGS
                     QICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRA
                     YLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTY
                     RPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSSAKRLGESATVFGGWQFVRF
                     VPKRETVGGAVNNAAYRRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGIAAFSTEA
                     QRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF"
BASE COUNT          937 a         1283 c          875 g          817 t
ORIGIN      
        1 caacgaagcc gaagacagta cagatagtac ggaaccgatt cacttggtgc ttcagcacct
       61 gagagaatcg ttctctttga gctaaagcga ggcaacgctg tactggtttt tgttaatcca
      121 ctatacttgg agctggtctt gcttttcgcc taattctacg ttttcaaacg gttgcagctg
      181 gtggtctgtc ataaaggtct ccttattgta tttcaggttg gaaatcggaa tttgttttca
      241 caattttaca ccttcgcccc ccactttctc tacataaaat tacattttgc cgatatttgc
      301 cgaatcgtct gaaaatatgt gtaaaaagag cgtataatca aaacatttgc cccgaattgc
      361 catgccttat ttcgccctgt ttgacgatgc cgtaagcggc cgcgcaaaac gctatcaaaa
      421 tcatgtggaa agccgttttt tccgtcccga agaactcgat gctttggaca gcgcgctgca
      481 aaagggctgg caaaaagggc tgcattcggt gttgtttgca gactacggat tcggtttgcc
      541 gctgacgggg gtcgagtccg aacgcggcgg caaccttgcc ctgcactggt ttgccgactg
      601 cgccgacacc gatgccgaaa actggcttgc ccgacattca gacggcctcc ccgccggcat
      661 ttccacgccg caatcctccg tatccgaagc cgattacctc gaccatatcc gccaaatcca
      721 cgaagccatc cggcgcggcg acacctatca aatcaactac accacccgcc tgcacctgca
      781 agcctacggc aatcccgtca gcctctaccg ccgcctgcgc cagcccgtcc cctatgccgt
      841 tttgtcccac ctgcccgatg cacaagggca atccgcgtgg acgctgtgtt tctcgcccga
      901 actcttcctc aaaatcggtt cggacggcac catcagcacc gaaccgatga aaggcaccgc
      961 gccgattttg ggcgacggac aagacgaacg ccgcgccgcc gagttgcaag cagacccgaa
     1021 aaaccgcgcc gaaaacgtga tgattgtcga tttgctgcgt aacgacctcg gcaaaatcgc
     1081 ccaaaccggc acagtatgcg tacccgaacc gtttaaagta tcgcgtttcg gcagcgtttg
     1141 gcagatgacc agcaccatcc aagcccaagc cttgccgcac acctcgttcg ccgacatcct
     1201 ccgcgccgcc ttcccctgcg gcagcatcac cggcgcgccc aaaaaaatga gtatgcagat
     1261 tatcgaatcg ctcgaagccg aagcgcgcgg actttatacg ggcagcatcg gctatttgaa
     1321 cccgtgttcc ggcggcttgg ggtttgaagg cacgttcaac gtcgttatcc gcaccttgtc
     1381 gctcacgccg ctttcagacg gcatttatca aggcgtgtac ggtgtcggtt ccggcatcgt
     1441 catcgacagc gaccctgccg ccgaatatcg ggaatgcggc tggaaagccc gtttcctcaa
     1501 cgaattgcgc cccgacttcg gcatttttga aaccctgcgc gtggaaaacg gacgctgcgc
     1561 cctgctcgac cgccacctat gccgtctgaa aacctccgcc caagccctca acctgcccct
     1621 gcccgacggt tgcgaaaatc aaatcaaaca atacatcgca cgcttgcccg acggcgcgtt
     1681 ccgcatcaaa gccctgctcg cttcagacgg catcagcctg tcccgcgccg ttttaaaccg
     1741 tctgaccgac aaacaacgcg tcatcatttc gcccgccgtc ctgcccgcac aaaactacct
     1801 gcgccgcttc aaaaccacct gccgcgccct cttcgaccaa gcgtggcaaa ccgccgaaac
     1861 acaaggcgcg ttcgacagcc tgtttttcaa ttcagacggc atcctgctcg aaggcggcag
     1921 aagcaacgtg ttcgtcaaac atcgcggaca atggctcacg ccctccttag atttagacat
     1981 tttaaacggc ataatgcgcc aagccgtatt ggacgaaccg caaaaatatt tgcaaacaaa
     2041 tcaagtaatc gaaacacaca tcacacaaaa aacactgcaa gaagccgaag aaatccgcct
     2101 ctccaacgcc ttgcgcggcg tatttgccgc cgcccttgcc tgaacgcgca aaaatgccgt
     2161 ccgaacctgt ttccaaagtt cggacggcat tatcccacca ttcaaaaccg ccaatccgcc
     2221 gacacaaaca cctcgctgtt gcggcgtttc gcatacggca cattactttc cgtcctgccg
     2281 aaacgataat tcaacgccgg cacgatacct ttgtacgaca acttgtcgtg gctcaaagcc
     2341 agcgagacat tccattcgcg gttgcgttgc gcctctgtcg agaaagccgc aatgccctta
     2401 tagttgcggc gggcataaga cgcagaaacc cgactgttca aaccgcccaa ctgccgccac
     2461 tcctgcgccc aaccggcata aacaccgttg cgccggtagg cggcattatt gaccgcgccg
     2521 cccaccgttt cgcgtttcgg cacaaaccgc acaaactgcc agccgccgaa cacagttgcc
     2581 gattcgccca aacgttttgc cgacgaaaca taaaacccgt cctgcctgcc gttattgtat
     2641 tccgccctat cctgttcgcg gtagcgttgg cggtaatgtt ccagcgcgac cgaaaattgc
     2701 catcccgggt ttgggcggta agtatgggac aactgcacgc cgactccgtg cgccagcata
     2761 tacggcggca ggcggcggtt gtttacccgt tttgttttcg catcaaagcc gtcgctgccc
     2821 gacaactgca cctgataaaa cggcaaaatc cccgccgtct gccgtgcatt tttatactgc
     2881 caacccaaat acgctctgcc gaacccgtcg tcataagctg attttttact gaaataatag
     2941 ctcgtgccgc cgatattgga acggaacaac aaataatgat tatctgccaa cgccgtcagt
     3001 ttttccgcct cgatttcata attcaagcct gccgcccgct ccgcccggct gacactgcat
     3061 atctgactgc ctccgttttg ccggcaatac tgcggcgcgg cattattggc atttctattg
     3121 accgccgggc tgataccgcc cgaaaaacgc cagcccgtca gcccctccgc ttttttccga
     3181 aaacgcccca cattttccaa aaccggcgcc ggcaaatcca atttttccgc ctcggcaaaa
     3241 tgcctttctg ccgacttcag ccggaaatcg tcaaactccg ccgccgccaa atccagcaaa
     3301 atccgctcgt ctgccgcatt ttccccgtgc agttcccgat accgcgccac cgcctccgcc
     3361 ggccttcccg ccaatttcgc cagcaaagcc cgcgccctgc cgtacaaaac cgcgtcataa
     3421 tccggcagct tggcatacaa atccgccaac gaagcgatta aatccgcctg attgccgttg
     3481 agcgcgtcgc gcaaactatg ttccaacatt ttcgggtgcg ccaacaaaaa atccccgtca
     3541 accacgcgcg gggcatcatt ttcaactttc caatccgatt ccgcccactt atccgacacc
     3601 gaccgctgca cctgcaacaa tgccttgtca tccaaaatcg cgggcgcatc cgccccatag
     3661 gcggcagaaa cacctgccgc acaccaaaca accaaaaaac cgtatctgaa atacaacata
     3721 ccctgtcatt tacctttctg gcaaacacgc cgccgaagca cgtcaaacca tccgaaaaac
     3781 aggcagaaac ccgtgaaaac cggctttgcc gtctgaaagc gggcaggcaa aaaaccgccg
     3841 cccgattttc aaagggcgga tttcacattt atagtggatt aacaaaaatc aggacaagac
     3901 gacgaagccg ca
//
LOCUS       DAXIFD010000164         3861 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.164, whole genome shotgun sequence.
ACCESSION   DAXIFD010000164 DAXIFD010000000
VERSION     DAXIFD010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.164"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            490..1446
                     /gene="thiL"
                     /locus_tag="ACFOCN_001796"
     CDS             490..1446
                     /gene="thiL"
                     /locus_tag="ACFOCN_001796"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HFC6970899.1"
                     /translation="MKEFDFIKRYLQTGTDKDVVLGIGDDAAIVRPREGFDLCFSADM
                     LLKDRHFFADVKPEDLAWKVLAVNISDMAAMGAIPRWVLLSAALPELDEVWLERFCGS
                     FFGLAKKFGVTLIGGDTTKGDMAFNVTIIGELPKGRALRRDAAVAGDDIWVSGRVGMA
                     AAALNCRLKRCVLPDDVFAECEQKLLRPEPRVGLGLALLPFARAAQDVSDGLAQDLGH
                     ILTASGVGAEIWADSLPSLSVLKDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVLD
                     AAERCGVPVTRIGKINGGCRLKVLDADGRELELHSLGFDHFG"
     gene            1439..1924
                     /locus_tag="ACFOCN_001797"
     CDS             1439..1924
                     /locus_tag="ACFOCN_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HFC6970900.1"
                     /translation="MADFKPDFAWLLKRPLCFLAFGFGSGLAPFAPGTFGTLAALPLA
                     FVLILLGIDGLLLAFLCIVLFMWGIRICAYAERETGVSDHGGIVWDEIVAMLFVLAFV
                     PFRWTWWLAAFVLFRLFDALKPSPVGWFDKNLHGGLGIMADDMAAAVMTLIVLRIAML
                     F"
     gene            complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFOCN_001798"
     CDS             complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFOCN_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HFC6970901.1"
                     /translation="MSQQYVYSMLRVSKVVPPQKTIIKDISLSFFPGAKIGLLGLNGA
                     GKSTVLRIMAGVDKEFEGEAVPMGGIKIGYLPQEPELDPEKTVREEVESGLGEVAAAQ
                     KRLEEVYAEYANPDADFDALAEEQGRLEAIIAAGSSTGGGAEHELEIAADALRLPEWD
                     AKIDNLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLVRFPGTVVAV
                     THDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEKRLENEAKSEAARVKAMKQEL
                     EWVRQNAKGRQAKSKARLARFEEMSNYEYQKRNETQEIFIPVAERLGNEVIEFVNVSK
                     SFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKSTLFKMIAGKEQPDSGEVKIGQTVKMS
                     LIDQSREGLQNDKTVFDNIAEGRDILQVGQFEIPARQYLGRFNFKGSDQSKITGQLSG
                     GERGRLHLAKTLLGGGNVLLLDEPSNDLDVGTLRALEDALLEFAGSVMVISHDRWFLD
                     RIATHILACEGDSKWVFFDGNYQEYEADKKRRLGEEGTKPKRIKYKPVTR"
BASE COUNT          784 a          943 c         1079 g         1055 t
ORIGIN      
        1 gaggcaacgc tgtactggtt taaatttaat ccactatatc ggttgaaact ctgattttaa
       61 ggcggtagga tgtgggtttg cccatagaaa gggaatcctt tctgtatcaa gccctgaaag
      121 ggataattca tacaaattca cgcctttccc cttcattggg aaatggatgg aatcgtgcca
      181 gatgtgtgcg gcactgtatg ccggatatgg ttttatcatc agcccttttc ggttgaaacc
      241 ccgtcagttg cagcgattga gcctaatcgg tggcggaagt tgccgctttg cattcggggt
      301 ggcgtgcagt gcggtgcttt gatatgccgt ttgtgtgttg aaacagggtg gtcggtgcat
      361 acgggtacgg tatggccaaa gctaaaagtg aaatacgctg aaacactgaa tgagccgctt
      421 tattgtttgt acggcctttg ctgccttgct atgatttaaa ttggattcgc ccgccggata
      481 ttttgggata tgaaagaatt tgacttcatc aaacggtatt tgcaaacagg cacggataag
      541 gatgtcgtat tgggcatagg cgacgatgcg gcgattgtcc gcccgcgtga aggcttcgat
      601 ttgtgtttca gtgcggatat gcttttgaag gacaggcatt tttttgccga tgtcaaacct
      661 gaggacttgg cttggaaggt tttggccgtc aatatttcag atatggcggc gatgggcgcg
      721 ataccgcgtt gggtgttgtt aagtgcggct ttgcccgaat tggatgaggt atggctggaa
      781 cggttttgcg gcagcttttt cggtttggca aaaaagtttg gcgtaacgtt aatcggcggc
      841 gatacgacca agggcgatat ggcgttcaat gtaaccatta tcggcgaatt gccgaagggt
      901 agggcattgc ggcgtgatgc ggcggttgcg ggcgacgata tttgggtgtc ggggcgtgtc
      961 ggtatggcgg cggcggcttt gaactgccgt ctgaaacggt gtgtgttgcc ggatgatgtg
     1021 tttgccgaat gcgaacaaaa gctgctccgc cccgagccaa gggttgggct ggggcttgcg
     1081 ctgttgccgt ttgcccgggc ggcgcaggat gtttcagacg gcctcgcgca agatttgggg
     1141 catatcctga ccgcttccgg cgtgggggcg gaaatttggg ccgattcgct gccgtcttta
     1201 tccgtattga aagatatttt gccccgagcg caatggctgt cttatacttt ggcgggcggc
     1261 gacgattacg agctggtgtt taccgcgccg gaaagttgcc gcagccgcgt gcttgatgcg
     1321 gcagaacggt gcggcgtgcc ggtaacgcgc atcggcaaaa tcaacggagg atgccgtctg
     1381 aaggttttag atgccgacgg cagggaattg gaactacatt ctttaggatt cgatcatttt
     1441 ggctgatttt aaacctgact ttgcgtggct gttgaaacga ccgttgtgtt ttttggcttt
     1501 tggtttcggc agcgggctgg ctccgttcgc gccgggtaca tttggcactt tggcggcact
     1561 gcctttggca tttgtgctga ttttgctcgg catagacggg ctgctgctgg cttttttgtg
     1621 tatcgtgctg tttatgtggg gcatacgcat ttgcgcttat gcggaacgtg aaacgggtgt
     1681 cagcgaccat ggtgggattg tttgggacga gattgtcgcc atgctgtttg tgctggcgtt
     1741 tgtgccgttc aggtggacgt ggtggctggc ggcatttgtc ctattccgtc tgtttgacgc
     1801 gctcaaaccg tctcccgtcg gttggtttga caagaatctg cacggcggtt tgggcattat
     1861 ggcggacgat atggcggctg cggtgatgac tttgattgtc ttgaggattg caatgctgtt
     1921 ttaaacggtg ctgccttgta aaaatgccgt ctgaaagcct ttcagacggc attgtttcgg
     1981 aggttaacgc gttaccggtt tgtatttgat gcgtttcggt ttcgtgcctt cttcgccgag
     2041 tcggcgtttc ttgtcggctt cgtattcctg atagttgccg tcaaagaaca cccatttgga
     2101 gtcgccttcg caagccaaga tatgcgtagc aatacggtcg aggaaccagc ggtcgtgcga
     2161 aatcaccatc acgctgccgg caaattccag caatgcgtct tccaacgcgc gcagggttcc
     2221 cacgtcgagg tcgttggacg gttcgtccag cagcaacaca ttgccaccgc ccaacaaggt
     2281 ttttgccaag tgcaaacgtc cgcgttcgcc gccggaaagc tgccccgtga ttttgctttg
     2341 gtcgctgcct ttgaaattga agcgtcccaa atattggcgg gcggggattt caaactgccc
     2401 gacctgtaaa atatcgcgac cttcggcaat gttgtcgaac acggttttgt cgttttgcaa
     2461 accttcgcgg ctttggtcaa tcaagctcat tttcacggtt tgcccgattt tcacttcacc
     2521 agaatcgggc tgctctttgc ccgcaatcat tttaaacagt gtcgatttac ccgcgccgtt
     2581 cggaccgatg atgccgacaa tcgcgcccgc aggcactttg aagctcaaat cgtcaatcag
     2641 cactttgtcg ccgaacgatt tggaaacatt cacaaattca atcacttcgt tacccaaacg
     2701 ctcggcgacg ggaatgaaga tttcctgcgt ttcattgcgt ttttggtatt cgtagttgct
     2761 catttcttca aaacgagcca aacgcgcttt ggacttggct tggcggcctt tggcattttg
     2821 gcgcacccat tccaattcct gcttcatcgc cttcacgcgc gcggcttcgg attttgcctc
     2881 gttttccaag cgtttttctt tctgctccag ccaagacgag taattgcctt tccacggaat
     2941 accatggccg cggtcgagtt ccaaaatcca ttcggcggcg ttgtcgagga agtagcggtc
     3001 gtgtgttacc gcaacgactg taccggggaa gcgcacgaga aattgctcca gccactcgac
     3061 agattccgcg tccaagtggt tggtcggctc gtccagcaaa agcatatcgg gtttgctcaa
     3121 caagagtttg cacaaggcaa cgcggcgttt ttcaccgccg gacaaattat cgattttggc
     3181 atcccattcc ggcaggcgca gcgcgtcggc ggcgatttcc aattcgtgtt ccgcaccgcc
     3241 gcccgtggac gaacctgccg caataatcgc ttccaagcgg ccctgctctt ctgccaacgc
     3301 gtcaaaatcc gcatcaggat tggcgtactc ggcatacact tcttccaaac gtttctgcgc
     3361 ggcagccact tcgcccaaac cgctttccac ttcctcgcgc acggtttttt caggatcaag
     3421 ctcaggctct tgcggcaggt agccgatttt aatgccgccc atcggcacgg cttcgccctc
     3481 aaattcctta tccacacccg ccataatccg cagcacggtg gacttgcccg cgccgttcaa
     3541 accgagcagg ccgattttcg cgccggggaa gaaagaaagg gaaatatctt taatgatggt
     3601 tttctgcggc ggcacaacct tgcttacgcg cagcatagaa tagacgtatt gttgggacat
     3661 ggttttctcg ttttcatcaa acaaatttca gacggccatt ttaaccgata atttgattta
     3721 agccagttta tccgcgaacc ggtattgcca aaatcgggca ggattcataa aatccgccta
     3781 tccctttgaa attatacaga caaaaaaaat aataatgata ggagatcgcc gcaccggcaa
     3841 ccatttcgga ttttccaaag c
//
LOCUS       DAXIFD010000165         3855 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.165, whole genome shotgun sequence.
ACCESSION   DAXIFD010000165 DAXIFD010000000
VERSION     DAXIFD010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3855
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.165"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..419
                     /locus_tag="ACFOCN_001799"
     CDS             <1..419
                     /locus_tag="ACFOCN_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HFC6970902.1"
                     /translation="EAEWAGSLFGLHKSFGFLTLTVITLRIVWAVANRAKRPQSDSKA
                     AAAGHGILYLLMLAVPVIGMIRQYGSGRGPLKVFGVEVMQGSPEKIEWMANLGNTFHG
                     NLGWLLFAAVVGHVAMVVVHRVQGKDVLYRMTGRVR"
     gene            complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="ACFOCN_001800"
     CDS             complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="ACFOCN_001800"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HFC6970903.1"
                     /translation="MFQKHLQKASDSVVGGTLYVVATPIGNLADITLRALAVLQKADI
                     ICAEDTRVTAQLLSAYGIQGKLVSVREHNERQMADKIVGYLSDGMVVAQVSDAGTPAV
                     CDPGAKLARRVREVGFKVVPVVGASAVMAALSVAGVAGSDFYFNGFVPPKSGERRKLF
                     AKWVRAAFPVVMFETPHRIGATLADMAELFSERRLMLAREITKTFETFLSGTVGEIQT
                     ALSADGNQSRGEMVLVLYPAQDEKHEGLSESAQNIMKILTAELPTKQAAELAAKITGE
                     GKKALYNLALSWKNK"
     gene            1376..1723
                     /locus_tag="ACFOCN_001801"
     CDS             1376..1723
                     /locus_tag="ACFOCN_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HFC6970904.1"
                     /translation="MRLNHKQGEAGEDAALAFLQSQGCTLLARNWHCAYGEIDLIVKN
                     GGMILFVEVKYRKNRQFGGAAYSISPSKLLKLQRSVEYYLQQNRLTNVPCRLDAVLIE
                     GSRPPEWIQNITG"
     gene            1728..2321
                     /locus_tag="ACFOCN_001802"
     CDS             1728..2321
                     /locus_tag="ACFOCN_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HFC6970905.1"
                     /translation="MTTLQERVAAHFAESIRAKQEAGKVLVEPTVQAAELMLQCLMND
                     GKILACGNGGSAADAQHFAAEMTGRFEKERMELAAVALTTDTSALTAIGNDYGFNHVF
                     SKQVRALGRAGDILVGISTSGNSANVIEAIKAAHERDMHVIALTGRDGGKIAAILKDT
                     DVLLNVPHPRTARIQENHILLIHAICDCIDSVLLEGM"
     gene            2385..2993
                     /locus_tag="ACFOCN_001803"
     CDS             2385..2993
                     /locus_tag="ACFOCN_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HFC6970906.1"
                     /translation="MKPKPHTVRTLIAAIFSLALSGCVSAVIGSAAVGAKSAVDRRTT
                     GAQTDDNVMALRIETTARSYLRQNNQTKGYTPQISVVGYNRHLLLLGQVATEGEKQFV
                     GQIARSEQAAEGVYNYITVASLPRTAGDIAGDTWNTSKVRATLLGISPATQARVKIVT
                     YGNVTYVMGILTPEEQAQITQKVSTTVGVQKVITLYQNYVQR"
     gene            3001..3651
                     /locus_tag="ACFOCN_001804"
     CDS             3001..3651
                     /locus_tag="ACFOCN_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970907.1"
                     /translation="MPSEPPSDGIARHPKSTIKMAKKPNKPFRLTPKLLIRAVLLICI
                     TAIGALAIGIVSTFNPNGDKTLQAEPQHTDSPRETEFWLPNGVVGQDAAQPEHHHAAS
                     SEPAQPDGTDESGSGLPSPAAPKKNRVKPQPADTAQTDRQPDDAGTQAENTLKETPVL
                     PTNVPRPEPRKETPEKQAQPKETPKEKETPKENHTKPDTPKNTPPKPHKEILDNLF"
     gene            3691..>3855
                     /locus_tag="ACFOCN_001805"
     CDS             3691..>3855
                     /locus_tag="ACFOCN_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFC6970908.1"
                     /translation="MNGIIIKTPEEIEKMRELGKLVAEALDYIGQFVKPGVTTDEIDK
                     LVYDYHVNVQG"
BASE COUNT          985 a         1271 c          936 g          663 t
ORIGIN      
        1 aagaggcgga atgggcgggc agcctgttcg gcctgcacaa atctttcggc ttcctcacgc
       61 tgacggtgat tacattgcgc atcgtgtggg cagttgccaa ccgcgccaag cgtccgcaaa
      121 gcgacagcaa ggctgcggcg gcaggacacg gcattctgta tctgctcatg cttgccgttc
      181 ccgttatcgg catgatccgc caatacggca gcggccgcgg cccgttgaaa gtgttcggcg
      241 ttgaggtgat gcagggttcg ccggaaaaaa tcgagtggat ggcaaacttg ggcaacacgt
      301 tccacggcaa tttgggctgg ctgctgtttg ccgccgtcgt cggacacgtc gccatggtcg
      361 tcgtccaccg tgttcaaggc aaagacgtgc tgtaccgcat gacggggcgt gtccgttgat
      421 tccgttcgca ctatggtgcc ggtccgtccg gcatcatttg tttttccaag acagtgccag
      481 attgtacaaa gctttttttc cctcgcccgt gattttggcg gcaagctccg ccgcctgttt
      541 ggtcggcagc tcggctgtga ggattttcat gatgttttgc gcggactcgg acaagccttc
      601 gtgtttttca tcctgcgccg gataaagcac caacaccatc tcaccgcgcg attggttgcc
      661 gtcggcagac aatgccgtct gaatttcccc aaccgtgccg cttaagaacg tttcaaacgt
      721 tttcgtaatt tcgcgcgcca gcattaatcg gcgttcggag aacagttccg ccatatcggc
      781 aagcgtcgca ccgatgcggt gcggcgtttc aaacatcacg acgggaaacg ccgcccgcac
      841 ccatttggca aacagtttcc tgcgctctcc cgatttcggc ggtacaaaac cgttgaaata
      901 aaaatcggat cccgccacac cggccacact caaagccgcc atcaccgcgc ttgcgccgac
      961 aacagggaca actttaaacc cgacctcacg cacgcggcgg gcgagtttcg cgcccgggtc
     1021 gcacacggcc ggcgtacccg catcggaaac ctgtgccaca accatgccgt ctgaaagata
     1081 gccgacaatc ttgtccgcca tctgccgttc gttgtgttcg cgcacgctga caagtttgcc
     1141 ctgaatgccg tacgcgctca aaagctgcgc ggtaacgcgc gtgtcttcgg cacagatgat
     1201 gtccgccttt tgcaataccg ccaaagcgcg cagggtaatg tccgccaaat tgccgatggg
     1261 cgtggcaacc acgtataatg tccctccgac gacgctgtcg gaggctttct gcaagtgttt
     1321 ctgaaacata aaaaatgccg tctgaaaaac agacattata aaggttaaac cgattatgcg
     1381 cctaaaccac aaacagggcg aggcagggga agatgccgcg cttgccttcc tccaatccca
     1441 aggctgcaca ctgcttgccc gcaactggca ctgcgcctac ggcgaaatcg acctgattgt
     1501 caaaaacggc ggcatgattc tgtttgttga agtaaaatac cgcaaaaatc ggcaattcgg
     1561 cggtgccgca tacagcattt ccccatccaa attattgaaa ctgcaacgaa gtgtagagta
     1621 ttatctgcaa cagaacaggt tgacaaacgt accgtgccgc ctcgacgcgg tactcatcga
     1681 aggcagccgc ccgcccgagt ggatacagaa tattacaggt tgacgatatg acgacattac
     1741 aagaacgcgt tgccgcccat tttgccgaaa gcatccgtgc caagcaggaa gccggaaaag
     1801 tattggtcga gccgaccgta caggctgccg agctgatgct gcaatgcctg atgaacgacg
     1861 gcaagattct ggcgtgcggc aacggcggtt cggctgccga cgcgcagcac ttcgccgccg
     1921 aaatgaccgg acgctttgaa aaagagcgca tggaactcgc cgccgtcgcc ctgaccacag
     1981 acacctccgc gctgaccgcc atcggtaacg actacggctt caaccacgtc ttcagcaaac
     2041 aggtacgcgc cctcggacgc gccggcgaca tcctcgtcgg catttccact tccggcaatt
     2101 ccgccaacgt catcgaagcc attaaagcgg cacacgaacg cgatatgcac gtcatcgccc
     2161 tgaccggccg cgacggcggc aaaatcgccg ccatactcaa agacaccgac gttctgctca
     2221 acgtccccca tccgcgcacc gcccgcattc aggaaaacca catcctgctg atacacgcca
     2281 tatgcgactg tatcgactcc gtactgctgg aaggaatgta acccttttca gacggcatgg
     2341 cgcaaagcaa tgccgtctga aacgcccaag aaaggaagcc cccgatgaaa cccaaaccgc
     2401 acaccgtccg caccctgatt gccgccattt tcagccttgc ccttagcggc tgcgtcagcg
     2461 cagtaatcgg aagcgccgcc gtcggcgcga aatccgccgt cgaccgccga accaccggcg
     2521 cgcaaaccga cgacaacgtt atggcgttgc gtatcgaaac caccgcccgc tcctatctgc
     2581 gccaaaacaa ccaaaccaaa ggctacacgc cccaaatctc tgttgtcggc tacaaccgcc
     2641 acctgctgct gctcggacaa gtcgccaccg aaggcgagaa acagttcgtc ggtcagattg
     2701 cacgttccga acaggccgcc gaaggcgtat acaactacat taccgtcgcc tccctgccgc
     2761 gcactgccgg cgacatcgcc ggcgacactt ggaacacatc caaagtccgc gccacgctgt
     2821 tgggcatcag ccccgccaca caggcgcgcg tcaaaatcgt tacctacggc aacgtaacct
     2881 acgttatggg catcctcacc cccgaagaac aggcgcagat tacccaaaaa gtcagcacca
     2941 ccgtcggcgt acaaaaagtc atcaccctct accaaaacta cgtccaacgc tgactcggca
     3001 atgccgtctg aaccgccttc agacggcatt gcccgacacc ccaaaagcac aatcaaaatg
     3061 gcaaaaaaac cgaacaaacc cttcaggctg acccccaaac tcctgatacg cgccgtattg
     3121 ctcatctgta tcaccgccat cggcgcattg gcaataggca tcgtcagcac attcaacccg
     3181 aacggcgaca aaacccttca agccgaaccg caacacaccg acagcccccg cgaaaccgaa
     3241 ttctggctgc caaacggcgt agtcggacaa gatgccgccc aacccgaaca ccaccacgcc
     3301 gcctcatccg aacccgcaca gccggacggc acagacgaaa gcggcagcgg actgccgtcc
     3361 cctgccgcac ccaagaaaaa ccgggtcaaa ccgcaacctg ccgacacagc tcaaaccgac
     3421 aggcagccgg acgacgccgg aacacaagct gaaaacacac tcaaagaaac ccccgtactg
     3481 cccacaaacg tcccccgtcc cgaaccccga aaagaaacac ccgaaaaaca ggcgcagccc
     3541 aaagaaacac ccaaagaaaa agaaacgccc aaagaaaacc ataccaaacc ggacaccccg
     3601 aaaaacacgc cgcccaaacc ccataaagaa attctcgaca acctcttctg acccggcacg
     3661 gcaggcacac ccgcaatcca aggaagcatt atgaacggca tcatcatcaa aacccccgaa
     3721 gaaatcgaaa aaatgcgcga gctgggcaaa ctcgtcgccg aagccctcga ctacatcgga
     3781 caattcgtca aacccggcgt aaccaccgac gaaatcgaca aactcgttta cgactaccac
     3841 gtcaacgtcc aaggc
//
LOCUS       DAXIFD010000166         3801 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.166, whole genome shotgun sequence.
ACCESSION   DAXIFD010000166 DAXIFD010000000
VERSION     DAXIFD010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.166"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            354..3557
                     /gene="nalP"
                     /locus_tag="ACFOCN_001806"
     CDS             354..3557
                     /gene="nalP"
                     /locus_tag="ACFOCN_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endopeptidase autotransporter NalP"
                     /protein_id="HFC6970909.1"
                     /translation="MRTTPTFPTKTFKPAAMALAVATTLSACLGGGGGTSAPDFNAGG
                     TGIGSNSRATTAKSAAVSYAGIKNEMCKDRSMLCAGRDDVAVTDRDAKINAPPPNLHT
                     GDFTNPNDAYKNLINLKPAIEAGYTGRGVEVGIVDTGESVGSISFPELYGRKEHGYNE
                     NYKNYTAYMRKEAPEDGGGKDIKASFDDEAVIETEAKPTDIRHVKEIGHIDVVSHIIG
                     GRSVDGRPAGGIAPDATLHIMNTHDGTKNEIMSAAIRNAWVKLGERGVRIVNNSFGTT
                     SRAGTADHFQIANSEEQYRQALLAYSGGDKTDEGIRLMQQSDYGNLSYHIRNKNMLFI
                     FSASNDAQAQPNTLTLLPFYEKDAQKGIITVAGVDRSGEKFNGSNHCGITAMWCLSAP
                     YEASVRFTRTNPIQIAGTSFSAPIVTGTAALLLQKYPWMSNDNLRTTLLTTAQDIGAV
                     GVDSKFGWGLLDAGKAMNGPASFPFGDFTADTKGTSDIAYSFRNDISGTGGLIKKGGS
                     QLQLHGNNTYTGKTIIEGGSLVLYGNNKSDMRVETKGALIYNGAASGGSLNSDGIVYL
                     ADTDRSGANETVHIKGDLQLGGEGTLYTRLGKLLKVDGTAMTGGKLYMSARGKGAGYL
                     NRTGQRVPFLSAAKIGRDYSFFTNIETDGGLLASLDSVEKTAGSEGDTLSYYVRRGNA
                     ARTASAAAHSAPAGLKHAVEQGGSNLENLMVELDASESSATPETVETAAADRTDMPGI
                     RPYGATFRAAAAVQHANAADGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLDHN
                     GTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTWSE
                     NSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLM
                     QLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAG
                     LKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGL
                     GADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF"
BASE COUNT         1029 a         1030 c         1009 g          733 t
ORIGIN      
        1 atagtacgga accgattcac ttgttaaaga atcgttctct ttgagctaag gcgaggcaac
       61 gccgtactgg tttttgttca tccactataa ctagggaaat tcaaattaag ttagaattat
      121 ccctatgaga aaaagccgtc taagccggta taaacaaaat aaactcattg agctatttgt
      181 cgaaagttca aatttccatt ttaaaacaat tagtaaaatc gagtttatcc tagttgtcca
      241 agacaacccc tataataata taattcaaaa tataaaaatg ggttacatct aaacattacg
      301 gaatttttat tccctcgcct gaattctatt gtcagattca aggagacctc atcatgcgaa
      361 cgaccccaac cttccctaca aaaactttca aaccggctgc catggcgtta gctgttgcaa
      421 caacactttc tgcctgctta ggcggcggcg gcggcacttc tgcgcccgac ttcaatgcag
      481 gcggcaccgg tatcggcagc aacagcagag caacaacagc gaaatcagca gcagtatctt
      541 acgccggtat caagaacgaa atgtgcaaag acagaagcat gctctgtgcc ggtcgggatg
      601 acgttgcggt tacagacagg gatgccaaaa tcaatgcccc ccccccgaat ctgcataccg
      661 gagactttac aaacccaaat gacgcataca agaatttgat caacctcaaa cctgcaattg
      721 aagcaggcta tacaggacgc ggggtagagg taggtatcgt cgatacaggc gaatccgtcg
      781 gcagcatatc ctttcccgaa ctgtatggca gaaaagaaca cggctataac gaaaattaca
      841 aaaactatac ggcgtatatg cggaaggaag cgcctgaaga cggaggcggt aaagacatta
      901 aagcttcttt cgacgatgag gccgttatag agactgaagc aaagccgacg gatatccgcc
      961 acgtaaaaga aatcggacac atcgatgtgg tctcccatat tattggcggg cgttccgtgg
     1021 acggcagacc tgcaggcggt attgcgcccg atgcgacgct acacataatg aatacgcatg
     1081 atggaaccaa gaacgaaata atgtctgcag ccatccgcaa tgcatgggtc aagctgggcg
     1141 aacgtggcgt gcgcatcgtc aataacagtt ttggaacaac atcgagggca ggcactgccg
     1201 accatttcca aatagccaat tcggaggagc agtaccgcca agcgttgctc gcctattccg
     1261 gcggtgataa aacagacgag ggtatccgcc tgatgcaaca gagcgattac ggcaacttgt
     1321 cctaccacat ccgtaataaa aacatgcttt tcattttttc ggcaagcaat gacgcacaag
     1381 ctcagcccaa cacactgacc ctattgccat tttatgaaaa agatgctcaa aaaggcatta
     1441 tcacagtcgc aggcgtagac cgcagtggag aaaagttcaa tggctccaac cattgcggaa
     1501 ttactgccat gtggtgccta tcggcaccct atgaagcaag cgtccgtttc acccgtacaa
     1561 acccgattca aattgccgga acatcctttt ccgcacccat cgtaaccggc acggcggctc
     1621 tgctgctgca gaaatacccg tggatgagca acgacaacct gcgtaccacg ctgctgacaa
     1681 cggctcagga catcggtgca gtcggcgtgg acagcaagtt cggctgggga ctgctggatg
     1741 cgggtaaggc catgaacgga cccgcgtcct ttccgttcgg cgactttacc gccgatacga
     1801 aaggtacatc cgatattgcc tactccttcc gtaacgacat ttcaggcacg ggcggcctga
     1861 tcaaaaaagg cggcagccaa ctgcaactgc acggcaacaa cacctatacg ggcaaaacca
     1921 ttatcgaagg cggttcgctg gtgttgtacg gcaacaacaa atcggatatg cgcgtcgaaa
     1981 ccaaaggtgc gctgatttat aacggggcgg catccggcgg tagcctgaac agcgacggca
     2041 ttgtctatct ggcagatacc gaccgatccg gcgcaaacga aaccgtgcac atcaaaggcg
     2101 atctgcagct gggcggcgaa ggtacgctgt acacacgttt gggcaaactg ctgaaagtgg
     2161 acggtacggc gatgaccggc ggcaagctgt acatgtcggc acgcggcaaa ggggcaggct
     2221 atctcaaccg taccggacaa cgtgttccct tcctgagtgc cgccaaaatc gggcgggatt
     2281 attctttctt cacaaacatc gaaaccgacg gtggtctgct ggcttccctc gacagcgtcg
     2341 aaaaaacagc gggcagtgaa ggcgacacgc tgtcctatta tgtccgtcgc ggcaatgcgg
     2401 cacggactgc ttcggcagcg gcacattccg cgcccgccgg tctgaaacac gccgtagaac
     2461 agggcggcag caatctggaa aacctgatgg tcgaactgga tgcctccgaa tcatccgcaa
     2521 cacccgagac ggttgaaact gcggccgccg accgcacaga tatgccgggc atccgcccct
     2581 acggcgcaac tttccgcgca gcggcagccg tacagcatgc gaatgccgcc gacggtgtac
     2641 gcatcttcaa cagtctcgcc gctaccgtct atgccgacag taccgccgcc catgccgata
     2701 tgcagggacg ccgcctgaaa gccgtatcgg acgggttgga ccacaacggc acgggtctgc
     2761 gcgtcatcgc gcaaacccaa caggacggtg gaacgtggga acagggcggt gttgaaggca
     2821 aaatgcgcgg cagtacccaa accgtcggca ttgccgcgaa aaccggcgaa aatacgacag
     2881 cagccgccac actgggcatg ggacgcagca catggagcga aaacagtgca aatgcaaaaa
     2941 ccgacagcat tagtctgttt gcaggcatac ggcacgatgc gggcgatatc ggctatctca
     3001 aaggcctgtt ctcctacgga cgctacaaaa acagcatcag ccgcagcacc ggtgcggacg
     3061 aacatgcgga aggcagcgtc aacggcacgc tgatgcagct gggcgcactg ggcggtgtca
     3121 acgttccgtt tgccgcaacg ggagatttga cggtcgaagg cggtctgcgc tacgacctgc
     3181 tcaaacagga tgcattcgcc gaaaaaggca gtgctttggg ctggagcggc aacagcctca
     3241 ctgaaggcac actggtcgga ctcgcgggtc tgaagctgtc gcaacccttg agcgataaag
     3301 ccgtcctgtt tgcaacggcg ggcgtggaac gcgacctgaa cggacgcgac tacacggtaa
     3361 cgggcggctt taccggcgcg actgcagcaa ccggcaagac gggggcacgc aatatgccgc
     3421 acacccgcct ggttgccggt ctgggcgcgg atgtcgaatt cggcaacggc tggaacggct
     3481 tggcacgtta cagctacgcc ggttccaaac agtacggcaa ccacagcgga cgagtcggcg
     3541 taggctaccg gttctgacgg acaggaagca gacagccgca aagatcacgg tctttgcggc
     3601 tgtttcttat gaaaagaaaa ccctattcca attgcctgct tctattgttt caagacttct
     3661 tccaaagatt cggcattaat cagatgtata gcggattaac aaaaatcagg acaaggcggc
     3721 gaagccgcag acagtacaaa tagtacggaa ccgattcact cggtgcttga gcaccttaga
     3781 gaatcgtttc tttgagctaa g
//
LOCUS       DAXIFD010000167         3798 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.167, whole genome shotgun sequence.
ACCESSION   DAXIFD010000167 DAXIFD010000000
VERSION     DAXIFD010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.167"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..229)
                     /locus_tag="ACFOCN_001807"
     CDS             complement(<1..229)
                     /locus_tag="ACFOCN_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6970910.1"
                     /translation="MRKSRLSRYKQNKLIELFVAGVTARTATEPDSIVYTDCYRSYDV
                     LDVSEFSHFRINHSTHFAERQNHINGIENFWN"
     gene            490..1962
                     /gene="pyk"
                     /locus_tag="ACFOCN_001808"
     CDS             490..1962
                     /gene="pyk"
                     /locus_tag="ACFOCN_001808"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFC6970911.1"
                     /translation="MNQTSRDLTRISHNTKIVATLGPGSNNVELLEDMIRVGGLNVVR
                     FNFSHGTPEFHQENARIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETL
                     LLDAALEGEGTREAVGLDYRDLPDDVAAGDVLWLDDGLLTLTVESVEGSRIITRVENS
                     HVLKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKV
                     EEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQK
                     RMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGA
                     YPFETVSQMAIICAAAEKEQDSLNGVAEQAEYPEAVSTNLAVAGGAVSVARAVHAKAI
                     VALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNE
                     VETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK"
     gene            2270..3670
                     /locus_tag="ACFOCN_001809"
     CDS             2270..3670
                     /locus_tag="ACFOCN_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpP1/FadL family transporter"
                     /protein_id="HFC6970912.1"
                     /translation="MTPSALKKTVLLLGTAFAAASAQASGYHFGTQSVNAQSTANAAA
                     AEAADASTIFYNPAGLTKLDSSQISVNANIVLPSIHYEADSATDFTGLPVQGSKSGKI
                     TKTTVAPHIYGAYKVNDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIAVEPV
                     AAWKLNDRHSFGAGIIAQHTSAELRKYADWGIKSKAEILTAKPPKPNGVAEAAKIQAD
                     GHADVKGSDWGFGYQLAWMWDINDRARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWS
                     TMLAANGYTANEKARVKIVTPESLSVHGMYKVSDKADLFGDVTWTRHSRFDKAELVFE
                     KEKTIVNGKSDRTTITPNWRNTYKVGFGGSYQISEPLQLRAGIAFDKSPVRNADYRMN
                     SLPDGNRIWFSAGMKYHIGKNHVVDAAYTHIHINDTSYRTAKASGNDVDSKGASSARF
                     KNHADIIGLQYTYKFK"
BASE COUNT          996 a         1116 c          943 g          743 t
ORIGIN      
        1 ggttccaaaa attctcaatt ccattgatat ggttttgtcg ttcagcaaaa tgtgtgctgt
       61 gattgatacg gaaatggcta aattcgctca catctaatac atcatagcta cgataacaat
      121 ccgtataaac aatgctgtca ggctctgttg ctgttcttgc agttacacct gcgacaaata
      181 gctcaatgag tttattttgt ttataccggc ttagacgact ttttctcata gggataattc
      241 taacttaatt tgaatttccc tagttatcta ggacagtccc aaaaataaat ttagcctaag
      301 tcataaaacc gtgtaatttt gcaccaaaaa aggcggtttg caggtaaaat atcaaactat
      361 taatttaaat catattttta cagaatattc cgccgcgttc atcaaatgga catcaaaccg
      421 gttccaaatt tctgtaattt tgtaacaaaa taccgcaaaa cacccgattg agaccaaaag
      481 gactttcata tgaaccagac aagccgcgat ctgacccgca tcagccacaa caccaaaatc
      541 gtcgccaccc ttgggccggg cagcaacaac gtcgaactgt tggaagatat gatccgcgtc
      601 ggcggcctga acgtcgtccg cttcaacttc agccacggca cgcccgaatt ccatcaggaa
      661 aacgcccgca tcgtgcgcga agcggcaaaa cgcgccggac aggaaatcgc catcattgcc
      721 gacctgcaag ggccgaaaat ccgcgtgggc aaaatcgccg gcggcggcat cgaattgaac
      781 aaaggcgaaa cgctgctact ggatgccgcg cttgaaggcg aaggcacgcg cgaggcggtc
      841 ggtttggact accgcgacct gcccgatgac gttgccgcag gcgatgtctt gtggctggac
      901 gacggcctgc tgaccctgac cgtggaatcc gtcgaaggca gcaggattat cacaagggtg
      961 gaaaacagcc acgtcctgaa aagcaacaag ggcatcaaca aacgcggcgg cggtctgtcc
     1021 gcaggcgcgt tgaccgaaaa agacttccgc gacctgaaaa ccgcgattgc catcggttgc
     1081 gactacctcg ccatcagctt tgtgaaatcc gccgaagatt tgcatatcgc gcgcgccaaa
     1141 gtcgaagaag aaatgaaagg cagcacggcc gtgcgccccg gtttggtttc caaaatcgaa
     1201 cgcgtagaag cgattgaaaa cttggacgaa atcatcctcg ccggcgacgg cattatggtt
     1261 gcgcgcggcg acttggcggt cgaagtcgga cacgccgccg tccccgccct gcaaaaacgg
     1321 atgatccgcc gcgcccgcga gttgcgccgc ttcagcatta cggcgacgca aatgatggaa
     1381 tcgatgatta ccaaccccgt accgacccgc gcggaagtca gcgatgtggc aaacgcggta
     1441 ttggacggta ccgatgcggt gatgtgttcc gccgaaaccg ccgtcggcgc gtatccgttt
     1501 gaaaccgtca gccaaatggc aattatctgc gcggctgcgg aaaaagagca ggattcgctc
     1561 aacggcgttg ccgaacaggc ggagtatccc gaagcggtca gcaccaacct ggcggttgcc
     1621 ggcggcgcgg tcagcgtggc gcgcgcggtt cacgccaaag cgattgtcgc cctgaccgaa
     1681 agcggttcga ccgcctttga aatcagccgc cacaacatca ccctgccgat tttcgcgctg
     1741 accccgagcg tttccgccca acgccgtatg gcgatgtacc gcggcgtgcg cccgctgatt
     1801 ttggcaacca gtaccgacca cgacacggcg ttgaacgaag tcgaaaccat gctggtggaa
     1861 cacaacatcc tgcattccgg cgaccagtac atcatcacca gcggttcgca aatgcgcgaa
     1921 tccggttcga ccaacacact ggaagtgctg cgcgtcaaat aatccgccct gagtggaaaa
     1981 tgccgtctga agccgatgcc cgaggcttca gacggcattt tttgcggcgg cgcggcggtt
     2041 cgggcaaact gaaaaaattg tgcaaatccg gcaacatcgg ataaaattga gtacctatac
     2101 taaagcgaaa caaggcattt ccgactgcct tttttatagt ggattaaatt taaaccagta
     2161 cggcgttgcc ttgccgtact atctgtactg tctgcggctt cgtcgccttg tcctgatttt
     2221 tgttaatcca ctatatttat ccaccgtccg cctttttacg gaaaccgaaa tgaccccttc
     2281 cgcactgaaa aaaaccgtcc tactgctcgg cactgccttt gccgccgcat ccgcacaagc
     2341 ctccggctac cacttcggca cacagtcggt caacgcgcaa agcacggcaa atgccgccgc
     2401 cgcagaagcc gccgacgcat cgaccatctt ctacaaccct gccggcctga ccaaactcga
     2461 cagcagccag atttccgtca acgccaacat cgtgctgccc agcattcatt atgaggcgga
     2521 ttccgccacc gactttaccg ggcttcccgt ccaaggttcg aaaagcggca aaatcaccaa
     2581 aaccacggtc gcgccccaca tctacggcgc atacaaagtc aacgacaatc tgaccgtggg
     2641 cttgggcgtg tacgtcccct tcggctctgc caccgaatac gaaaaagatt ccgtgttgcg
     2701 ccacaacatc aacaaactcg gtctgaccag catcgccgtc gaacctgtcg ccgcatggaa
     2761 actcaacgac cgccattcct tcggcgcagg catcatcgcc caacatactt ccgccgaact
     2821 gcgcaaatat gccgactggg ggattaagag taaagcagag atattgacgg caaaaccgcc
     2881 caaacctaac ggtgtagccg aagctgcaaa aattcaggcc gacggacacg ccgatgtcaa
     2941 aggcagcgat tggggcttcg gctaccaact ggcgtggatg tgggacatca acgaccgcgc
     3001 gcgcgtgggc gtgaactacc gttccaaagt ctcgcacacg ctcaaaggcg atgccgaatg
     3061 ggcggcagac ggcgcggcgg cgaaagcaat gtggagtacg atgcttgcag caaacggcta
     3121 cacggcgaat gaaaaagccc gcgttaaaat cgttacgcct gagtctttgt ccgtacacgg
     3181 tatgtacaaa gtgtccgata aagccgacct gttcggcgac gtaacttgga cgcgccacag
     3241 ccgcttcgat aaggcggaac tggtttttga aaaagaaaaa accatcgtca acggcaaatc
     3301 cgaccgcacc accatcaccc ccaactggcg caacacctac aaagtcggct tcggcggttc
     3361 ttatcaaatc agcgaaccgc tgcaactgcg cgccggcatc gcttttgaca aatcgcccgt
     3421 ccgcaacgcc gactaccgca tgaacagcct gcccgacggc aaccgcatct ggttctccgc
     3481 cggcatgaaa taccatatcg gcaaaaacca cgtcgtcgat gccgcctaca cccacatcca
     3541 catcaacgac accagctacc gcacggcgaa ggcaagcggc aacgatgtgg acagcaaagg
     3601 cgcgtcttcc gcacgtttca aaaaccacgc cgacatcatc ggcctgcaat acacctacaa
     3661 attcaaataa acggcccgcc gtttgattgt agaaatgccg tctgaaacag atttccgttt
     3721 cagacggcat tgttttaggc gcgatttata gtggattaac aaaaatcaga acaaggcgac
     3781 gaagccgcag acagtaca
//
LOCUS       DAXIFD010000168         3792 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.168, whole genome shotgun sequence.
ACCESSION   DAXIFD010000168 DAXIFD010000000
VERSION     DAXIFD010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.168"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(370..1410)
                     /gene="queA"
                     /locus_tag="ACFOCN_001810"
     CDS             complement(370..1410)
                     /gene="queA"
                     /locus_tag="ACFOCN_001810"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HFC6970913.1"
                     /translation="MDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPLQDRVFGD
                     LPDYVEAGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKP
                     GMGLVFEGGIRAVTVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDS
                     RYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVDKIE
                     EHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTD
                     IFITPGYRFNVVDRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGD
                     AMVLGWNEGVVR"
     gene            1527..1784
                     /locus_tag="ACFOCN_001811"
     CDS             1527..1784
                     /locus_tag="ACFOCN_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase"
                     /protein_id="HFC6970914.1"
                     /translation="MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTV
                     SEHHSARFAPLPQAGCFLKNQRNNPPKHRQPLKEQKWICAN"
     gene            1766..2221
                     /gene="accB"
                     /locus_tag="ACFOCN_001812"
     CDS             1766..2221
                     /gene="accB"
                     /locus_tag="ACFOCN_001812"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HFC6970915.1"
                     /translation="MDLRKLKKLIDLVEESGIAEIEVTEGEEKVRITRTIAAAPVYAA
                     PVPAAAPAVTPAAAPVAASAPAAAPAARDLSDAQKSPMVGTFYRAPGPNAAPFVEVGQ
                     QVKVGDTLCIIEAMKLMNEIEAEKSGTVKEILVENGTPVEFGEPLFIIG"
     gene            2333..3694
                     /gene="accC"
                     /locus_tag="ACFOCN_001813"
     CDS             2333..3694
                     /gene="accC"
                     /locus_tag="ACFOCN_001813"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HFC6970916.1"
                     /translation="MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKL
                     ADESVCIGPAASAQSYLNVPAIIAAAEVSCADAVHPGYGFLAENADFAEQVEQSGFTF
                     IGPKPDTIRLMGDKVSAKHAMIEAGVPCVPGSDGALPDDGEEILKIADKVGYPVIIKA
                     SGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADE
                     HGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIGYRGAGTFE
                     FLYEDGEFFFIEMNTRVQVEHPVTELITGVDIVQEQLRIASGLPLQYKQKDIKIEGHA
                     FECRINAEDPYNFIPSPGPIESCHLPGGFGIRVDSHIYQGYRIPPYYDSLIGKICVHG
                     KTREQAMAKMRVALAELAVTGIKTNTPLHRDLFNDPGFQKGGVSIHYLEHWLEDRKAK
                     QDK"
BASE COUNT          924 a         1151 c          921 g          796 t
ORIGIN      
        1 aatttatctt ataaacaaac aaaggcagcc tgaaagattg aatggtctgc acccctaagg
       61 ttggactaac caaccgacta aggtgcagat tattttttgt tgctttttca gcttttcgtt
      121 gggttagata ttcttgccca ctgttttcag gcagccttga atacaaaaaa tggcgtatgt
      181 aatatgttta tacgaccaaa acggaatgaa ttttaacgta ttgcgcgtca tcaacaatga
      241 ctgagtttct cgcctctcgc gcctgaatct atgtcatata cagttccttt cattcaaatc
      301 aacaaaagaa tgccgtccga acgtccgttc agacggcact tgtcttcccg caatagactt
      361 ggggctgttc taacgtacca ccccttcgtt ccaccccaaa accatcgcat cgccgtagct
      421 gaagaaacgg tattcgcgtt cgaccgcata acgatacgcg gcgcggatat gacccatacc
      481 cgaaaacgcg ctgacaagca tcagcagcgt cgatttcggc aaatgaaaat tggtaaccag
      541 cctgtcgaca acattaaaac ggtagcccgg cgtgatgaaa atatcggtgt cgccctgccc
      601 cgctttcaga cgacccgtcg cacgcgcggc agattcgagg gcgcgcatgg aagtcgtgcc
      661 gactgcccag actttgttcc cccgggcttt tgccgcctca acggcggcgg cggtttcaga
      721 cggcacttca aaccattcgc tgtgcatttt atgctcttcg attttgtcca cacgcacggg
      781 ttggaatgtc cccgcaccga cgtgtagggt tacttctgcg gttactgcgc ctttgtcttt
      841 caggcggcgc aaaagttctt ccgtaaaatg cagacccgcc gtcggcgcgg cgaccgcgcc
      901 ctgatatttg gcataaacgg tttgataacg gctgtcgtca tccgcatcgg cggcgcgttc
      961 gatataaggc ggcaggggca ggtgtccgtt ctgttccaaa agttcgtaaa cggtttgacc
     1021 gccttcaaaa cgcaggcaga acagttcgcc ctcacgcccg accgtcacgg cgcggatgcc
     1081 gccttcaaac accagcccca taccgggctt gggcgatttg gacgaacgga tgtgcgccag
     1141 tgcggtatgg ttgtccaaca cgcgctcaat cagggcttcg atcctgccgc cgctgtcttt
     1201 ctgcccaaac agccgcgcct tcatgacttt ggtgttgttg aacaccaaaa cgtcgcccgc
     1261 ctcaacataa tccggcaaat cgccgaacac ccggtcttgc agcggcatat cgggcaacgc
     1321 aaccaaaagg cggctgctgc cgcgcacttc gggcggatgc tgggcaatca gcttttcggg
     1381 cagggtaaaa tcaaaatctg aaatatccat ttttacactc tcgttcgggc aagccgccat
     1441 tatacgcact ttagcccttt ttcagacggc atctttgtcc gaaaaaccaa cagattagaa
     1501 taaacactct taacccgggg catcttgtgc gcaaaatcaa acttcctgca catttccccc
     1561 aaaaaccgcc gttttttgat attttactgg acatttaccg acaacttcgg gaaaataaac
     1621 acattctcac ggtcgttttc caccacagga aaaccgtatc cgaacaccat tccgcccggt
     1681 ttgcgccgtt gccgcaagcc ggctgttttc tgaaaaacca acgcaacaac ccgccgaaac
     1741 accggcagcc tttaaaggaa cagaaatgga tttgcgcaaa ttaaaaaaac tgattgattt
     1801 ggttgaagaa tcgggtatcg ccgaaatcga agtaaccgaa ggcgaggaaa aagtccgcat
     1861 cacccgaacc atcgccgccg cacccgttta cgccgcgccc gtacctgccg ccgcgccggc
     1921 cgtaacgcct gccgccgcac ccgttgcggc atccgcgcct gccgccgcac ctgccgcccg
     1981 cgatttgtcc gacgcgcaaa aatcacctat ggtcggcacg ttctaccgcg cacccggccc
     2041 gaatgccgcg ccttttgtcg aagtcggcca acaggttaaa gtcggcgaca cgctgtgcat
     2101 catcgaagcg atgaagctga tgaacgaaat cgaagccgaa aaatccggca cggtcaaaga
     2161 aattttggtc gaaaacggta cgcccgtcga attcggcgaa ccgctcttca tcatcggata
     2221 atcctgtttt cagacggcat aaacttccga tgccgtctga aatgctttcc cccttcagcg
     2281 ttcccgcacc cttttttacg gacgggttgc cggaaccgca ggaaaggtca tcatgctgaa
     2341 aaaagtttta atcgccaacc gaggcgaaat cgcattacgc gtactccgtg cctgccgcga
     2401 aatgggcatt gccaccgtcg ccgtgcattc cgaggccgac aaagacagcc tgcacgtcaa
     2461 actcgccgac gaatccgtgt gcatcggccc tgccgcttcc gcgcaaagct acctcaacgt
     2521 ccccgccatt atcgccgccg ccgaagtaag ctgcgcggac gctgtccacc cgggctacgg
     2581 tttccttgcc gaaaacgccg atttcgccga acaggtcgag cagtccggct ttacctttat
     2641 cggcccgaaa cccgacacca tccgcctgat gggcgacaaa gtatccgcca aacacgccat
     2701 gatcgaagcg ggcgtgcctt gtgttcccgg ctctgacggc gcattgcccg acgacggcga
     2761 agaaatcctc aaaatcgccg ataaagtcgg ttatcctgtc attatcaaag cctctggcgg
     2821 cggcggcggt cgcggtatgc gcgtggtcga gaaaaaagaa gacctcctcc aatctgtcga
     2881 aatgaccaag gcagaagcag gcgcggcatt cggcaacccg atggtttaca tggaacgcta
     2941 tttgcaacgt ccgcgccacg tcgaaatcca agtgattgcc gacgaacacg gcaacgccgt
     3001 ctaccttgcc gaacgcgact gttcgctaca acgccgccac caaaaagtca tcgaggaagc
     3061 accggctccg ttcatcactg aaaaagaacg cgccaaaatc ggcaacgcct gtgccgacgc
     3121 ctgcaaacgc atcggctatc gtggcgcagg tacgtttgaa ttcctgtacg aagacggcga
     3181 atttttcttt atcgagatga atacgcgcgt tcaggttgag catccggtta ccgagctcat
     3241 caccggcgtg gacattgtgc aggagcaact ccgcatcgca tccggcctgc cgctgcaata
     3301 caagcagaaa gacatcaaaa tcgaaggcca cgcgtttgag tgccgtatca acgccgaaga
     3361 cccatacaac ttcatcccca gcccgggccc gattgaaagc tgccacctgc ccggcggctt
     3421 cggtatccgc gtcgacagcc acatttacca aggctaccgc atcccgcctt actacgacag
     3481 cctgatcggc aaaatctgcg tacacggcaa aacgcgtgaa caggcaatgg cgaaaatgcg
     3541 cgtcgcactc gccgagctgg cggtaaccgg catcaaaacc aatacgccgc ttcaccgcga
     3601 cttgttcaac gacccaggtt tccaaaaagg cggcgtcagc atccactatt tggaacactg
     3661 gctggaagat cgcaaagcca aacaggacaa ataagccgcc gccgatatgc cgtctgaaac
     3721 agtttgtccg ttttcagacg gcatttccct tgccccgcgc cgtctgaaac cgatttcgat
     3781 atagtggatt aa
//
LOCUS       DAXIFD010000169         3766 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.169, whole genome shotgun sequence.
ACCESSION   DAXIFD010000169 DAXIFD010000000
VERSION     DAXIFD010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3766
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.169"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            40..463
                     /locus_tag="ACFOCN_001814"
                     /pseudo
     CDS             40..463
                     /locus_tag="ACFOCN_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221878.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            569..1132
                     /gene="pgsA"
                     /locus_tag="ACFOCN_001815"
     CDS             569..1132
                     /gene="pgsA"
                     /locus_tag="ACFOCN_001815"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HFC6970917.1"
                     /translation="MPWNLPIFLTWLRVLLIPVMTALFYLPFPWFAEETINLTAAVIF
                     AVAALTDWFDGFLARLWKQTSDFGAFLDPVADKLMVAVSLLLLVKLDRTYVLFAMIII
                     GREITISALREWMAQMGKRNSVAVATVGKFKTAAQMLAIFLLLLNIPDFYGFNLVVIG
                     NVLMFIASLLTVWSMLYYLKMAWKEIA"
     gene            1212..1287
                     /locus_tag="ACFOCN_001816"
     tRNA            1212..1287
                     /locus_tag="ACFOCN_001816"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1245..1247,aa:Gly,seq:gcc)
     gene            1313..1386
                     /locus_tag="ACFOCN_001817"
     tRNA            1313..1386
                     /locus_tag="ACFOCN_001817"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1345..1347,aa:Cys,seq:gca)
     gene            1489..1578
                     /locus_tag="ACFOCN_001818"
     tRNA            1489..1578
                     /locus_tag="ACFOCN_001818"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1523..1525,aa:Leu,seq:taa)
     gene            1682..2734
                     /gene="sohB"
                     /locus_tag="ACFOCN_001819"
     CDS             1682..2734
                     /gene="sohB"
                     /locus_tag="ACFOCN_001819"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HFC6970918.1"
                     /translation="MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVL
                     TDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSSETQK
                     SRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
                     RRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVPNIHRLLKK
                     HDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEV
                     ATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEAS
                     VEKLFAKLVNRRADVM"
     gene            complement(2785..3648)
                     /locus_tag="ACFOCN_001820"
     CDS             complement(2785..3648)
                     /locus_tag="ACFOCN_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
                     /protein_id="HFC6970919.1"
                     /translation="MENVETHSQNHRKRLIGTFFLVGLENLLMLVYPVFGGWAINAVI
                     AGQAWQALLYALVVLLMWLVGAARRIADTRTFTRIYTEIAVPVVLEQRQRQVPHSAVT
                     ARVALSREFVSFFEEHLPIAATSVVSIFGACIMLLVLEFWVGVSAVGILALFLWLLPR
                     FAAISENLYFRLKNSLERDNHFIRKGDERQLDRHYGLLARLRVLISNREAFGYLCVGT
                     AMGILFGFAFVMMTLKGYSSAGHVYSVGTYLWMFAMSLDDVPRLVEQYSNLKDIGQRI
                     EWSKRNIKAGT"
     gene            complement(3661..>3766)
                     /locus_tag="ACFOCN_001821"
     CDS             complement(3661..>3766)
                     /locus_tag="ACFOCN_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HFC6970920.1"
                     /translation="KVFATFGDKRTTRLFADLDALAEVMEKTISENKK"
BASE COUNT          953 a          893 c          982 g          938 t
ORIGIN      
        1 tatcgctggg tatggtttgc cgccataagc tgtctgctgt tgtccgccgt ttttattgca
       61 ccttacctga cggcatttca cgaacaagaa aaaacattcg aatatgcgga attgaccgtt
      121 accgccccca accgcagcgg acgggcaatc aaactggatg cagacgggca gcattaccgg
      181 ctttcctgct atgggttcga cagtttgtgc acaggcggca atatcggcag aaccatcagg
      241 gcggagcagg ttagagccgt tttaagcgaa accgtcggca aaggtttttt aaacggcgtt
      301 ctgttggaat accgcaacag tggcagtgtc tataagcaat aaagattttg cccgcacgga
      361 agaccgcctt gtcgaagtgt tggcacaacc tgccgttttc tgcctgaaac tgggtatttt
      421 gcttttattg cccgccattt tcctgcgttt gaaaagaatg tgaaaacaga ttggcggggc
      481 gggggaatgc ccatgcagca attttacgtt ttgggttatg aggataaccg ttataatcac
      541 aactttacag tctgcacaga gaaaaccgat gccttggaat ctccctatct tcctcacatg
      601 gttgagggtc ttgctcattc ctgtcatgac agcccttttt tacctgcctt ttccgtggtt
      661 cgcggaggaa acgattaatc tcaccgccgc cgtcattttt gccgttgccg ccttaaccga
      721 ctggtttgac ggatttttgg caagactgtg gaaacagact tccgatttcg gcgccttcct
      781 cgatcccgtc gccgacaagc tgatggttgc cgtatcgcta cttttactgg tcaaactcga
      841 ccggacctat gttttgtttg ccatgatcat tatcggcagg gaaattacca tttccgcatt
      901 gcgcgaatgg atggcgcaaa tgggcaaaag gaacagcgtt gccgtcgcca ccgtcggtaa
      961 gttcaaaacc gccgcgcaaa tgctggcaat tttcctgctg ctgctgaata ttcccgattt
     1021 ttacggattt aatcttgttg ttatcggcaa tgtattgatg tttatcgcat ctttgctgac
     1081 agtctggtcg atgctgtatt atctgaaaat ggcgtggaaa gaaatcgcct gaaaaaaaca
     1141 taaaaatagc ttgacggcaa aaacagaatc cataataatt gcgtctcttc gatgttggag
     1201 aatgaaatcg ggcgggaata gctcagttgg tagagcgcaa ccttgccaag gttgaggtcg
     1261 cgagttcgag actcgtttcc cgctccaagt tttttagata agccagtttt agggcgagat
     1321 agcaaagtgg ttatgcagcg gattgcaaat ccgtctacgc cggttcgatt ccgactctcg
     1381 cctccattat cgtactacgg cggggtggca gagtgtttat gctatgagga gtgcaatctt
     1441 catataggcc ggttaaaatc cgcgcccccg cctccacctt tcacaaatgc ccgggtggtg
     1501 aaataggtag acacaacgga cttaaaatcc gtcgggacta aacatcccgt gccggttcga
     1561 ttccggctcc gggcaccaag ctgaaaatga caatgccgct ccaagcggtt atttttttat
     1621 ctgtcggacg gtgatggaca atattgacat gttcatgcct gaacaagagg aaatccaatc
     1681 aatgtggaaa gaaattttac tgaattacgg tattttcctg ctcgaactgc ttaccgtgtt
     1741 cggcgcaatt gcgctgattg tgttggctat cgtacagagt aagaaacagt cggaaagcgg
     1801 cagtgtcgta ctgacggatt tttcggaaaa ttataaaaaa cagcggcaat cgtttgaagc
     1861 attcttttta agcggggaag aggcaaaaca tcaggaaaaa gaggaaaaga aaaaggaaaa
     1921 ggcggaagcc aaagcagaga aaaagcgttt gaaggagggt ggggagaaat cttccgaaac
     1981 gcaaaaatcc cgcctttttg tgttggattt tgacggcgat ttgtatgcac acgccgtaga
     2041 atccttgcgt catgagatta cggcggtgct tttgattgcc aagcctgaag atgaggttct
     2101 gcttagattg gaaagtccgg gcggcgtggt tcacggttac ggtttggcgg cttcgcagct
     2161 taggcgtttg cgcgaacgca atattccgct gaccgtcgcc gtcgataagg tggcggcgag
     2221 cggtggttat atgatggcgt gtgtggcgga taaaattgtt tccgctccgt ttgcgattgt
     2281 cggttcggtg ggtgttgtag cggaagtacc gaatatccac cgcctgttga aaaaacatga
     2341 tattgatgtg gatgtgatga cggcgggcga atttaagcgc acggttactt ttatgggtga
     2401 aaatacggaa aagggcaaac agaaattccg acaggaactg gaggaaacgc atcagttgtt
     2461 caagcagttt gtcagcgaga accgccctca attggatatt gaggaagtgg caacgggcga
     2521 gcattggttc ggtcggcagg cgttggcgtt gaacttgatt gacgagattt cgaccagtga
     2581 tgatttgttg ttgaaagcgt ttgaaaacaa acaggttatc gaagtgaaat atcaggagaa
     2641 gcaaagcctg atccagcgca ttggtttgca ggcggaagct tctgttgaaa agttgtttgc
     2701 caaacttgtc aaccggcggg cggatgtgat gtagtttgcc gaacggatgg aaatgccgtc
     2761 tgaagcgtgt tcagacggca tttttcaagt tccggctttg atgttccgtt tcgaccactc
     2821 tatccgttgt ccgatgtctt tcaaattgga atattgttcg accaatcgcg gcacgtcgtc
     2881 caaactcatg gcaaacatcc acagataagt gccgaccgaa tagacatgcc ccgcgctgct
     2941 gtagcctttg agcgtcatca tcacaaaagc aaagccgaac aaaataccca tcgccgtgcc
     3001 gacgcagaga tagccgaagg cttcgcggtt ggaaatcagc acacgcaggc gcgcaagcag
     3061 tccgtaatgg cggtccagct gccgctcgtc gccttttcgg ataaagtggt tgtcgcgttc
     3121 caagctgttc ttcaggcgga aatacaggtt ttcgctgatg gcggcaaaac gtggcaaaag
     3181 ccataaaaac aacgcaagta tgcccaccgc cgacacgccg acccaaaatt ccagcaccag
     3241 cagcatgatg cacgcgccga atatggatac gacggatgtc gcggcaatcg gcaggtgttc
     3301 ttcaaaaaag ctgacaaact cacgcgacag ggcaacccgc gcagttaccg ccgaatgcgg
     3361 gacttgccgc tgccgctgtt ccaacacaac cggcacggcg atttcggtat aaatccgcgt
     3421 aaacgtgcgc gtatcggcaa tccgccgcgc cgcaccgacc agccacatca aaagcacaac
     3481 caaagcgtac agcaacgcct gccacgcctg ccccgcaatc acggcattaa tcgcccagcc
     3541 gccaaacacc ggatacacca gcatcaaaag gttttccagt ccgaccagaa aaaatgtgcc
     3601 aatcaatcgc ttgcggtggt tttggctatg tgtttcaaca ttttccacat atttgccccc
     3661 ctatttttta ttttccgaga ttgttttttc catcacttca gccagtgcat ccaaatcggc
     3721 aaacagccgg gttgtgcgct tgtcgccgaa tgtggcaaat actttg
//
LOCUS       DAXIFD010000170         3681 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.170, whole genome shotgun sequence.
ACCESSION   DAXIFD010000170 DAXIFD010000000
VERSION     DAXIFD010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.170"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            201..1043
                     /locus_tag="ACFOCN_001822"
     CDS             201..1043
                     /locus_tag="ACFOCN_001822"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HFC6970921.1"
                     /translation="MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGK
                     GVRLFHDDKPSANSPVADLVRAYQIKSENVIAHIRKASQGQTSLANTHPFMREMWGGY
                     WLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAG
                     LTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTP
                     SDRVAVIATLPLTRDESWSQLAVDELVMFREGNIVRHDRPENPVYMSAEEGLEIARAA
                     GVSV"
     gene            1072..1536
                     /locus_tag="ACFOCN_001823"
     CDS             1072..1536
                     /locus_tag="ACFOCN_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HFC6970922.1"
                     /translation="MKCPFCAHPDTRVADSRLMEERNAVRRRRHCPSCGKRFGTLETA
                     ELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTKHRLYTSGQRD
                     IPSAALADMVLKELLEHNTEAAVRFAALHKRFDNPADFASWLAQAVKTDRKA"
     gene            1569..2678
                     /gene="ribD"
                     /locus_tag="ACFOCN_001824"
     CDS             1569..2678
                     /gene="ribD"
                     /locus_tag="ACFOCN_001824"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HFC6970923.1"
                     /translation="MFSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQG
                     FHVKAGEPHAEVHALRQAGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAA
                     MRDPNPLVAGKGLALLEAAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSL
                     DGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQP
                     ARIVLDSRLRLPLDSHLLTDGQSPTYIATLERDEDKLRPYREHAHIRILMPSETAGGK
                     IDLNHLMRLLADEGFGEIMVEAGSELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLP
                     ENRAALSAPPLWTPVSSEILGHDIKTVFRKNDNAF"
     gene            2873..>3681
                     /locus_tag="ACFOCN_001825"
     CDS             2873..>3681
                     /locus_tag="ACFOCN_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HFC6970924.1"
                     /translation="MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQT
                     AAGLTVSVLCLGLDQAYVREYYAAADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSE
                     ILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVPKLAILLLLPLT
                     VGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRHAPFSPAVLHRGLRYGIP
                     IALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTV"
BASE COUNT          755 a         1239 c          944 g          743 t
ORIGIN      
        1 gggttttggt ttttttcgat aaattcttga ggcattgaaa ttccagattc ccgcctgcgc
       61 gggaatgacg gaatcttaag tttccgtctt tgttttctgt tttcgtggga ataatgggga
      121 acaagccgta tttcagacgg cattttcagt tcggggtata atccgaatac ttgcgaccat
      181 ctgaatcatt tggacaaact atgtgtcaac tgctgggcat gaactgcaat acgccgaccg
      241 atattatgtt ttcctttgaa ggcttccgcc ggcgcggcgg cattaccgac catcatgccg
      301 acggtttcgg catcggcttt ttcgaaggca aaggcgtgcg cctgttccac gacgacaagc
      361 cgagcgcaaa ttcccccgtc gccgacctcg tgcgtgccta ccaaatcaaa tcggaaaacg
      421 tcatcgcaca tatccgcaaa gcatcgcaag gacaaacctc gctggcgaac acccatccct
      481 ttatgcgcga aatgtggggc ggctactggc tgtttgccca caacggacat ttgattgatt
      541 ttttccccga acagggcgaa tttttccacc ccgtcggcac aaccgattcc gaacgcgcgt
      601 tctgccacat cctcaaccgc ctgcgcaccc gctttgccgc ccgtcccgac gacgacacgc
      661 tgtttgacgc gattgcgggg ctgacgcacg aaatccgcaa gttcgggctg tttaacttta
      721 tgctttcaga cggcattgcc ctgtttgccc acgccagcac actgctgcac tacatcgtcc
      781 gccaagcccc gttcggcaag gcgcgcctgc tcgacgacga cgtgatggtc gattttgccg
      841 aagtaaccac gccctccgac cgcgtcgccg ttatcgccac cctgccactg acccgcgacg
      901 aatcatggtc ccaacttgcc gtggacgaac tggtcatgtt ccgcgaaggc aacatcgtcc
      961 gacacgaccg tcccgaaaac cccgtctata tgagtgccga agaaggtctg gaaatcgccc
     1021 gcgccgccgg cgtatcggtt tgacgttcag acggcatcag gaagaaacgc tatgaaatgc
     1081 ccgttttgcg cccaccccga cacccgcgtc gccgattcgc gcctgatgga agaacgcaac
     1141 gccgtgcgcc gccgccgcca ctgccccagc tgcggcaaac gcttcggcac gctcgaaacc
     1201 gccgaactca aaatgcccgc cgtcatcggt ccggacaaaa aacgttcgcc ctttaatgca
     1261 caacgcctcc gcaacgacct gaccgccgcc gcccgaaaat ccgccctgac acccgaacag
     1321 atcgacgaaa ccgtccgcct gacgaaacac aggctctaca cttcgggtca gcgcgacatc
     1381 ccctctgccg cacttgccga catggtgcta aaagagctgc ttgagcacaa cacggaagcc
     1441 gccgtccgtt tcgccgccct gcacaaacgc ttcgacaatc cggcagactt tgcctcgtgg
     1501 ctggcgcaag ccgtcaaaac agaccgcaaa gcctgattct ccccaaccca tactgatacg
     1561 gtatccctat gttttcggac acagatatat ccatgatgga aaccgccctc cgacttgccg
     1621 ctttgggacg tttttccact tcgcccaatc cgcgcgtcgg ctgcgttatc gcacacggca
     1681 gccaaattgt cgggcaaggc ttccacgtca aagcgggcga accgcacgcc gaagtccacg
     1741 ccctgcgtca ggcgggcgaa atggcacaag gcgcgaccgc ctttgttacc ctcgaaccgt
     1801 gcagccatta cggacgcaca ccgccctgcg ccgaagctct gctccgttcc ggtgtaacac
     1861 gcgtcgtcgc cgccatgcgc gaccccaacc cgctggttgc aggcaaaggg cttgccctgc
     1921 tcgaagcagc aggcatcaag acggaatgcg gtttactcga acatcaggca agggaactca
     1981 accgaggctt cctgtcgcgc atcgaacgcc gccgcccctt cgtccgcctc aaatgcgccg
     2041 tttcgctgga cggcaaaacc gccctttcag acggcagcag cttttggatt accggcgaag
     2101 acgcgcgtgc cgacgtacag gttttgcgtg ccgaaagctg cgcggtgctg accggcatcg
     2161 gcacggtgtt ggcggacaat ccccggctca acgtccgcgc ttttccaact ttgcgccaac
     2221 ccgcacgcat cgtgttagac agccgcctgc gcctgccctt ggacagccac cttctgaccg
     2281 acggacaatc tccaacctac atcgccacct tggaacgcga tgaagataaa ctccgcccct
     2341 atcgggaaca cgcacacatc cgcatcctga tgccgtctga aacggcaggc ggcaaaatcg
     2401 acctgaacca cctgatgcgc ctccttgccg acgaaggttt cggagaaatc atggtcgaag
     2461 caggctccga actcacatcc gcatttctgg cagaagatct ggcggacgaa atcgtgctgt
     2521 accgttcgcc caaaatcctc ggcagcggca aagacctgct ttccctgccc gaaaaccgcg
     2581 ccgccctttc cgcaccgccc ttgtggacac ccgtttcaag cgaaatcctc ggacacgaca
     2641 tcaaaaccgt gttccggaaa aacgataacg ccttttaaag ggtttgcgcc gtttcactat
     2701 ataataacgc cgataaaaaa cggccccgtt cagaccgccg cccgcccgga aaagcgcaac
     2761 ccggactgcc gcaccccgcc ggcagccgca acggactgaa agccgtcaaa ttccgatcaa
     2821 gaaaggcttc agacggcaca ggcagcatcc cgccgccgcc cggacatcaa aaatggacac
     2881 aaaagaaatc ctcggctacg cggcaggctc gatcggcagc gcggttttag ccgtcatcat
     2941 cctgccgctg ctgtcgtggt atttccccgc cgacgacatc gggcgcatcg tgctgatgca
     3001 gacggcggcg ggactgacgg tgtcggtatt gtgcctcggg ctggatcagg catacgtccg
     3061 cgaatactat gccgccgccg acaaagacac cttgttcaaa accctgttcc tgccgccgct
     3121 gctgtctgcc gccgcgatag ccgccctgct gctttcccgc ccgtccctgc cgtctgaaat
     3181 cctgttttcg ctcgacgatg ccgccgccgg catcgggctg gtgctgtttg aactgagctt
     3241 cctgcccatc cgctttctct tactggtttt gcgtatggaa gggcgcgccc ttgccttttc
     3301 gtccgcgcaa ctcgtgccca agctcgccat cctgctgctg ctgccgctga cggtcgggct
     3361 gctgcacttt ccggcgaaca ccgccgtcct gaccgccgtt tacgcgctgg caaaccttgc
     3421 cgccgccgcc tttttgctgt ttcaaaaccg atgccgtctg aaggccgtcc ggcacgcacc
     3481 gttttcgccc gccgtcctgc accgggggct gcgctacggc ataccgatcg cactgagcag
     3541 catcgcctat tgggggctgg catccgccga ccgtttgttc ctgaaaaaat atgccggtct
     3601 ggaacagctc ggcgtttatt cgatgggtat ttcgttcggc ggggcggcat tattgttcca
     3661 aagcatcttt tcaacggtct g
//
LOCUS       DAXIFD010000171         3645 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.171, whole genome shotgun sequence.
ACCESSION   DAXIFD010000171 DAXIFD010000000
VERSION     DAXIFD010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.171"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..938
                     /locus_tag="ACFOCN_001826"
     CDS             <1..938
                     /locus_tag="ACFOCN_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Slam-dependent surface lipoprotein"
                     /protein_id="HFC6970925.1"
                     /translation="IPTATPLPTGEVKLSDDNSKIENINTAGTGSTSGISIQQREVEK
                     EPFPGYKTKETSFIFQTPGGAQYALSSYADPITVSYSSPDFKIPDRHAGQRLADGSRI
                     FICCSESGATSYAEITKQDYMKFGAWIGPNGEIDLFAGGFPVGKTPKPAYSWSDDTPE
                     TQGKGKITYQVWGIRVKDGQFVTSSYTPPKGSSFTGYTNTPVLSFITANFNSNKLAGK
                     ILGNSDYGPDVEIKEATINGLTFSGTATSGGQTGNLDGKFFGKFDSSYSSDTSIGGKI
                     TFDGDRSLDTVFGGVSYEKQLEDTTNQDTEHLKKQ"
     gene            966..3398
                     /gene="hupB"
                     /locus_tag="ACFOCN_001827"
     CDS             966..3398
                     /gene="hupB"
                     /locus_tag="ACFOCN_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemoglobin-haptoglobin-utilization protein HupB"
                     /protein_id="HFC6970926.1"
                     /translation="MPIPFKPVLAAAAIAQAFPAFAADPAPQSAQTLNEITVTGTHKT
                     QKLGEEKIRRKTLDKLLVNDEHDLVRYDPGISVVEGGRAGSNGFTIRGVDKDRVAINV
                     DGLAQAESRSSEAFQELFGAYGNFNANRNTSEPENFSEVTITKGADSLKSGSGALGGA
                     VNYQTKSASDYVSEDKPYHLGIKGGSVGKNSQRFSSITASGRLFGLDALLVYTRRFGK
                     ETKNRSTEGDVKIKNAGYIYNPTDVSGPSKWLDYVATGVARSQPDPQEWVNKSTLFKL
                     GYNFNDRNRIGWIFEDSRTDRFTNELSNLWTGTTTSPATGDYRHRQDVSYRRRSGVEY
                     KNELEHGLWDSLKLRYDKQRIDMNTWTWDIPKNYDTNGINGEVYHSFRHIRQNTAQWT
                     ADFEKQLDFSKAVWAAQYGLGGGRGDNANSDYSYFAKLYAPKILASNQAKITMLIENR
                     SKYKFAYWNNAFHLGGNDRFRLNAGIRYDKNSSSAKDDPKYTTAIRGQIPHLGSERAH
                     AGFSYGTGFDWRFTKHLHLLAKYSTGFRAPTSDETWLLFPHPDFYLKANPELKAEKAK
                     NWELGLAGSGKAGSFKLSGFKTKYRDFIELTYMGVSSDNPNSPNYAPISDGTALVSSP
                     VWQNQNRSSAWVKGLEFNGTWNLDSIGLPQGTHAGVNVSYIKGKAKQTNGQETPINAL
                     SPWSAVYNLGYDAPSKRWGINAYLTHTAAKKPSDTVHSSDDLNNPWPYAKHSKAYTLF
                     DLSAYLNIGKQVTLRAAAYNITNKQYYTWESLRSIREFGTVNRVDNKTHAGIQRFTSP
                     GRSYNFTIEAKF"
BASE COUNT          994 a         1137 c          841 g          673 t
ORIGIN      
        1 ccatccccac cgccaccccg ctgcccaccg gcgaggtaaa gttatcagac gacaatagca
       61 aaatcgaaaa catcaacacc gccggcacag gaagcacatc cggtatttcc attcagcagc
      121 gggaagtaga aaaagaacct ttccccggct acaaaaccaa agaaacatca ttcatcttcc
      181 aaacacccgg cggcgcgcaa tacgcccttt catcctacgc cgaccccata accgtcagct
      241 actcctcccc cgatttcaaa attcccgacc gccacgcagg gcagcggctt gccgacggca
      301 gccgcatctt tatctgttgc agcgaatccg gggctacttc gtatgcggaa atcaccaaac
      361 aagattatat gaaattcggg gcgtggatag gtcccaacgg cgaaatcgac ctcttcgccg
      421 gcggcttccc cgtcggcaaa acgccgaaac cggcatactc ctggagcgac gacacgcccg
      481 aaacccaagg caaaggcaaa atcacttatc aggtttgggg catccgcgtc aaagacgggc
      541 aatttgttac ctcctcttat acgccgccca aaggcagctc ttttaccggc tacaccaaca
      601 cccccgtcct ttcctttatc accgccaatt tcaacagcaa caaactggca ggcaaaatcc
      661 tcggcaacag cgattacggg ccggatgtgg aaattaaaga agcaacgatt aacggtctga
      721 ccttttccgg cactgccaca tccggcgggc aaaccggcaa cttggacggc aagttttttg
      781 gcaagttcga cagtagttac agcagcgaca ccagtatagg cggcaaaatc acctttgacg
      841 gcgaccgctc cctcgatacc gtattcggcg gtgtgagtta tgagaaacaa cttgaagaca
      901 caaccaatca agataccgaa catctcaaaa aacaataacc catacgcttt taaaaaggtt
      961 ttcttatgcc cattcccttc aaacccgtat tggctgccgc cgccatcgcc caagcgtttc
     1021 ccgcctttgc agcagacccc gcgccgcagt ccgcccaaac tctgaacgaa atcaccgtta
     1081 ccggcacgca caaaacccaa aaactcggcg aagaaaaaat ccgccgcaaa accttagaca
     1141 agctcttggt caacgacgaa cacgacctgg tgcgctacga ccccggcatt tccgtcgtcg
     1201 aaggcggcag ggcgggttct aacggcttta ccatacgcgg cgtggacaaa gaccgcgtcg
     1261 ccatcaacgt tgacgggctg gcgcaggcgg aaagccgctc ttccgaagcc ttccaagaat
     1321 tgttcggcgc gtacggcaac ttcaacgcca accgcaacac ttccgagccg gaaaactttt
     1381 ccgaagttac catcaccaaa ggcgcggact cgctcaaatc cggcagcggc gcattgggcg
     1441 gcgcagtcaa ttaccaaacc aaatccgcaa gcgattatgt ttccgaagac aagccctacc
     1501 atttggggat aaagggcggc agcgtcggca aaaacagcca aagattcagc agcatcaccg
     1561 cctccggcag gctctttggt ttggatgcct tattggttta tacccgccgc ttcggcaaag
     1621 aaaccaaaaa ccgctcgacc gagggcgatg tcaaaattaa aaacgccgga tatatctata
     1681 acccgaccga tgtatccgga cccagcaaat ggctggatta cgtagccaca ggggttgcac
     1741 gctcccaacc cgacccgcaa gagtgggtaa acaaaagcac cttgttcaag ctgggctaca
     1801 atttcaacga ccgcaaccgc atcggctgga tttttgaaga ctcccgcacc gaccgtttta
     1861 ccaacgaact gtctaatttg tggacgggta cgaccacatc tcccgcaacg ggcgactacc
     1921 gccaccgcca agacgtgagc taccgccgcc gctccggcgt cgaatacaaa aacgaattgg
     1981 aacacggcct gtgggacagc ctcaagctgc gctacgacaa gcagcgcatc gatatgaaca
     2041 cttggacttg ggacatcccg aaaaattacg atacaaacgg catcaacggc gaggtttacc
     2101 attcgttccg gcatatccgc caaaacaccg cgcaatggac tgccgatttt gaaaaacaac
     2161 tcgacttttc caaagccgtt tgggcggcgc aatacggctt gggcggcggc agaggggaca
     2221 atgccaactc ggattacagt tatttcgcaa aactgtacgc ccccaaaatc ctcgcttcca
     2281 accaagccaa aatcacgatg ctgatcgaaa accggtcgaa atataaattt gcctattgga
     2341 acaatgcgtt tcacttgggc ggcaacgacc gcttccgcct gaatgcgggc atacgctacg
     2401 acaaaaacag cagcagcgcg aaagacgatc cgaaatacac caccgccatc cgagggcaga
     2461 ttccccattt gggttcggaa cgcgcgcacg ccggcttcag ctacggcacg gggttcgact
     2521 ggcggtttac caagcatctg cacttgttgg caaaatacag caccggcttc cgcgcaccga
     2581 cttcggacga aacctggctg ctgttcccac accccgattt ctacctgaaa gccaaccccg
     2641 aactgaaagc ggaaaaagcc aaaaactggg aattgggtct ggcgggcagc ggcaaggcgg
     2701 gcagcttcaa gctctcgggc ttcaaaacca aataccgcga ctttatcgaa ctgacctaca
     2761 tgggcgtgtc ctcagacaac cccaacagcc ctaattatgc gccgatttcc gacggtaccg
     2821 cattggtcag ctcacccgtt tggcaaaacc aaaaccgctc ctccgcatgg gtgaaaggtt
     2881 tggaatttaa cggcacatgg aaccttgaca gcatcggttt gccgcaaggc acgcacgcag
     2941 gtgtcaatgt cagctacatc aaaggtaaag ccaaacagac caacggacaa gaaaccccga
     3001 ttaacgccct ttccccgtgg tctgccgttt acaatctggg ctacgatgct ccctccaaac
     3061 gctggggcat caatgcgtac ctgacacaca ccgcagctaa aaaaccgtcg gacaccgtcc
     3121 acagcagtga tgatttgaac aacccgtggc cttatgccaa acacagcaag gcctatacgc
     3181 tgttcgacct ttccgcctac ctcaacatcg gcaaacaggt aacgctccgc gctgccgcgt
     3241 acaacattac caacaagcag tactacactt gggaatcttt acgcagcatc cgcgagttcg
     3301 gcacggtcaa ccgcgttgac aacaaaaccc acgccggcat ccaacgcttt acctcgccgg
     3361 gcaggagcta caatttcacc atcgaagcga agttctaagc tcctgatgtg ccaatgccgt
     3421 ctgaaacccg atgatttggg tttcagacgg cattttttac ggtcgcaccg ccgccccctt
     3481 tcaggcttgt accaagccca atcccgcaac tctccgtcat tcccacggaa gtgggaatct
     3541 agaaacgcaa agctgcaaga atttatcgga aatgactgaa actcaacgaa cctggattcc
     3601 cgcctgcgcg ggaatgacga agccatccgc acggaaacct gcacc
//
LOCUS       DAXIFD010000172         3639 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.172, whole genome shotgun sequence.
ACCESSION   DAXIFD010000172 DAXIFD010000000
VERSION     DAXIFD010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.172"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..561
                     /gene="map"
                     /locus_tag="ACFOCN_001828"
     CDS             <1..561
                     /gene="map"
                     /locus_tag="ACFOCN_001828"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFC6970927.1"
                     /translation="TSVNHVICHGIPDDKPLKEGDIINIDLTIKKDGFHGDSSRMFTV
                     GKVSPIAQRLIDVTHASMMAGIEAVKPGATLGDVGYACQQVAENAGYSVVQEFCGHGI
                     GRGFHEAPQVLHYGKKGQGSVLKPGMIFTVEPMINQGKRHLRILNDGWTVVTKDRSLS
                     AQWEHEVLVTETGYEILTVSPASGKP"
     gene            716..1015
                     /locus_tag="ACFOCN_001829"
     CDS             716..1015
                     /locus_tag="ACFOCN_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6970928.1"
                     /translation="MKIFENIEDVKAIRKKTGLNQIDFWGKVGVTQSGGSRYETGRKM
                     PKPVRELLRLVHIECIDLAKVNKKDMEIAALLKKHHPDLYAELSKQTKSERKKQS"
     gene            1253..1627
                     /locus_tag="ACFOCN_001830"
     CDS             1253..1627
                     /locus_tag="ACFOCN_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6970929.1"
                     /translation="MKLLTTAILSSAIALSSMAAAAGTNNPTVAKKTVSYVCQQGKKV
                     KVTYGFNKQGLTTYASAVINGKRVQMPVNLDKSDNVETFYGKEGGYVLGTGVMDGKSY
                     RKQPIMITAPDNQIVFKDCSPR"
     gene            complement(1815..3281)
                     /locus_tag="ACFOCN_001831"
     CDS             complement(1815..3281)
                     /locus_tag="ACFOCN_001831"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate:quinone oxidoreductase"
                     /protein_id="HFC6970930.1"
                     /translation="MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALE
                     SSNAWNNAGTGHSALCELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLE
                     DNSFINAVPHMSLVMNEDHCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG
                     RDENQPVAANYSAEGTDVDFGRLTRQMVKYLQGKGVKTEFNRHVEDIKRESDGAWVLK
                     TADTRNPDGQLTLRTRFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFFRNSTPET
                     AEQHNAKVYGQASVGAPPMSVPHLDTRNVDGKRHLMFGPYAGFRSNFLKQGSLMDLPL
                     SIHMDNLYPMLCAGWANMPLTKYLLGELRKTKEERFASLLEYYPEANPDDWELITAGQ
                     RVQIIKKDSEKGGVLQFGTEIVAHADGSLAALLGASPGASTAVPLMIRLMHQCFPERA
                     PSWEGRLKELVPGYGIKLNENPERADEIIAYTAKVLDI"
BASE COUNT          951 a          991 c          901 g          796 t
ORIGIN      
        1 acctccgtca accacgtcat ctgccacggc attcccgacg acaagccgct caaagaaggc
       61 gacattatca acatcgacct caccatcaaa aaagacggct tccacggcga ctccagccgt
      121 atgtttaccg tcggcaaagt ctcccccatc gcccaacgcc tgatcgacgt aacccacgcc
      181 tccatgatgg cgggcataga agccgtcaaa cccggcgcga cactgggcga cgtaggttac
      241 gcctgccaac aggttgccga aaacgccggc tattccgtcg tacaggaatt ctgcggacac
      301 ggcatcgggc gcggtttcca cgaagccccg caagtgttgc actacggaaa aaaaggacag
      361 ggctccgttc taaaaccggg tatgattttt accgtcgaac cgatgatcaa ccaaggcaaa
      421 cgccacctgc gtatcctcaa cgacggctgg acggtggtta ccaaagaccg ctccctctcc
      481 gcccaatggg aacacgaagt cttggtgacc gaaaccggct acgaaatcct caccgtcagc
      541 cccgcctccg gcaaaccctg aagccggacg tatccgcccc ataaaaacaa acaatgccgt
      601 ctgaaagaaa cggcagatat gatatataat ataaaaacag gcttgacccg gcacattacg
      661 aaaacaaagc aaatcggaat ttgccccgca accagacaaa cttaaaggaa gttttatgaa
      721 aatatttgaa aatatagaag atgttaaagc catccgtaaa aagaccgggc tgaaccagat
      781 agacttctgg ggcaaggtcg gcgttaccca gtctggaggc tcgcgctacg aaaccggccg
      841 caaaatgccc aaacccgtac gcgaactgct ccgcctcgtc catatcgaat gcatcgattt
      901 ggcgaaagtc aacaaaaaag atatggaaat cgccgccctg ttgaaaaaac accatcccga
      961 cctgtatgcc gagttgtcca aacagaccaa gtccgaaaga aaaaaacaaa gttaaaccgc
     1021 aacctccgga tgcccgacag tttttcattt ccgaaaaacg caaacaatgc cgtctgaaac
     1081 accggacagg tcgccgtatc ccgcctgccg cccctgcctc aaaccgccga accgcccgaa
     1141 cccgcctttt tacaaacttt atccaatttc ctgtttattt caggatacgc cgacattaga
     1201 atgtcaaaca gctcgaaacg ggcaaactcc acatccatcc aaaggaataa aaatgaaact
     1261 tctgaccacc gcaatcctgt cttccgcaat cgcgctcagc agtatggctg ctgctgccgg
     1321 cacgaacaac cccaccgttg ccaaaaaaac cgtcagctac gtctgccagc aaggtaaaaa
     1381 agtcaaagta acctacggct tcaacaaaca gggtctgacc acatacgctt ccgccgtcat
     1441 caacggcaaa cgtgtgcaaa tgcctgtcaa tttggataaa tccgacaatg tggaaacatt
     1501 ctacggcaaa gaaggcggtt atgttttggg taccggcgtg atggatggca aatcttaccg
     1561 caaacagccc attatgatta ccgcacctga caaccaaatc gtcttcaaag actgttcccc
     1621 acgttaatca ggcaacaaaa aacagcgttt tcagaaatga aaacgctgtt tttttgaccg
     1681 ttccattatt cgcaaaaggg aaaaaacgat tacctgcccc gtgtatcaaa acctgccctg
     1741 ccggatgaag ggcataaccg gcagggacgg catcaacacc atatgggggt acggcttttc
     1801 ttgaaagatt cggcttaaat atccaacact ttcgcggtat aggcgataat ttcatccgcc
     1861 ctttcggggt tttcgttcaa cttgatgccg taacccggta ccagctcttt cagacggcct
     1921 tcccaagacg gggcgcgctc ggggaagcat tggtgcatca gccggatcat cagcggcaca
     1981 gcagtcgatg cgcccggcga cgcgcccagc aatgcggcga gtgagccgtc ggcgtgggcg
     2041 acaatctccg taccaaactg gagcacgccg cctttttcgg agtctttttt aatgatttgg
     2101 acgcgttgcc ctgcggtgat gagttcccag tcgtcggggt ttgcctcggg gtagtattcc
     2161 agcagggagg cgaagcgttc ttctttggtt ttacgcaatt cgcccagcag gtatttggtc
     2221 agcggcatat tcgcccagcc ggcgcacagc ataggataga ggttgtccat atggatggac
     2281 agcggcaaat ccataagcga gccttgcttg aggaagttgg aacggaagcc tgcataaggg
     2341 ccgaacataa ggtggcgttt gccgtccacg ttgcgtgtgt cgaggtgcgg gacggacatc
     2401 ggcggcgcgc cgacggaagc ctgcccgtac actttggcgt tgtgttgttc ggcggtttca
     2461 ggggtgctgt tgcggaagaa caggccggac acggggaagc cgccgtagcc tttgccttcg
     2521 gggatgccgg atttttgcag cagggtcagc gcgccgccgc ccgcgccgag gaagaggaag
     2581 cgggtacgga gggtgagctg cccgtcgggg ttgcgggtat cggcggtttt gagcacccac
     2641 gcgccgtcgg attcgcgttt gatgtcttcg acgtggcggt tgaactcggt ttttacgccc
     2701 ttgccctgca aatatttcac catttggcgc gtcagccgtc cgaaatcgac atccgtgcct
     2761 tcggcggagt agttggcggc gacgggttgg ttttcgtccc ggccgcgcat catcagcgga
     2821 gcccaatcgg aaattttgtt ccgatcggtg gaaaattcca tattttcaaa aagtttttgg
     2881 gttttaaacg cgtcataacg tttttgaaga taagaacaat ggtcttcatt catcaccaaa
     2941 gacatatgcg gcacggcatt gatgaaggaa ttgtcttcca acttgccttc cgcgaccaac
     3001 gtcgcccaaa actggcggct gacatgaaac tgttcggcaa tattgagggc gcgcgccgga
     3061 tcgataatcc catttgcacc caacggcgca tagttcaatt cgcacagcgc ggaatgcccc
     3121 gtgccggcgt tgttccacgc gtttgacgat tccaacgcca catcttccaa gcgttcaatc
     3181 agggtgattt cccaagacgg ttcgagttct ttgagcaaaa cgcccaaagt cgcgctcata
     3241 atgccgccgc ccaccaagac aacgtctgtc gcttcagcca tggtttactc ctaaaaaaca
     3301 ggcatcttct gcccttatgg ttatttgccg tactacaaac gcctgaatcg caaaagcagg
     3361 gaaaaccggc aatggtgtgt gtccgagtat gctgtttcgg ggttggaatg cgttgcaagt
     3421 atggcttccg acaccgcttc aggggcttgt aatatgttat cgtgaatgta gtggatttta
     3481 ctgggaaatg caaagttttt ctgtcgcccg ccaagcccgg gaactgcgaa atgaaaaata
     3541 aaaatagtta tttatctata tatatcaaat ttttaataga taaaaaacca aaattgttta
     3601 tatattaatt tttaaaagat tgtcagcata ttgcgttaa
//
LOCUS       DAXIFD010000173         3606 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.173, whole genome shotgun sequence.
ACCESSION   DAXIFD010000173 DAXIFD010000000
VERSION     DAXIFD010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.173"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(232..444)
                     /locus_tag="ACFOCN_001832"
     CDS             complement(232..444)
                     /locus_tag="ACFOCN_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6970931.1"
                     /translation="MGCKVGVGWASAHQLHQSHQPHQSANLTGTGKPMPSESGRIGGG
                     GGLKPTLQPTNPTNPLFRVIPTKVGI"
     gene            complement(769..2283)
                     /gene="katA"
                     /locus_tag="ACFOCN_001833"
     CDS             complement(769..2283)
                     /gene="katA"
                     /locus_tag="ACFOCN_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase KatA"
                     /protein_id="HFC6970932.1"
                     /translation="MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEK
                     LADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAG
                     ERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNM
                     RSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKF
                     HFRTQQGIKNLTNEEAAKIIADDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKV
                     PYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGIGASPDKM
                     LQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSF
                     GQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDAQKQALFGNTAAA
                     MGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQPGLL"
     gene            2631..3482
                     /locus_tag="ACFOCN_001834"
     CDS             2631..3482
                     /locus_tag="ACFOCN_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HFC6970933.1"
                     /translation="MTLLGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNP
                     LLERKDTDEFSDARFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSD
                     QEAACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLQHALTALKKFDPAGVAA
                     ADLNESLILQIERSGECAAKPAALHIVRNALDSIDGNRSQTLARIKKHLPQTDSGTLE
                     AALDLIASLNPFPAAGFASSTPTPYSDEALANLLAFRGMEVSRRTIAKYRESLEIPAA
                     HKRKTAE"
BASE COUNT          775 a          940 c         1016 g          875 t
ORIGIN      
        1 gccttcagac ggcatcggtt tgccggcacc ggtaagattg gcggagttgg tggaatggtg
       61 ggattggtgg gctgaagccc accctacgtc caccctatcg cccgtcctat gcatctacct
      121 tacacatccg ccttatgtga atacctaaac cgtcattccc gcgcaggtgg gaatccagac
      181 ctgtcggcac ggaaacttat cggggaaaaa ggtttcttta gattttacgt tctagattcc
      241 cactttcgtg ggaatgacgc ggaaaagtgg gttggtggga ttggtgggct gtagggtggg
      301 cttcagccca ccgcctccgc cgattctgcc gctttcagac ggcatcggtt tgccggtacc
      361 ggtaagattg gcggattggt ggggttggtg ggattggtgg agttggtggg ctgaagccca
      421 ccctacgccc accttacagc ccattctaca gtccgatacg gcttactgaa tcgtcagaaa
      481 tacctaaacc gtcattcccg cgcaggcggg aatccaggtc tgtcggtgcg gaaacttatg
      541 gggaaaaagg tttctttaga ttttacgttc tagattcccg cctgcgtggg aatgacggga
      601 tattttgcgt ttaataaaaa acgcccactg aaacggcggg ggcgggatgg ggaaatgccg
      661 tctgaagcgg tcaaacgacg tttcagacgg catttttatg cccggttatt tccggtagcg
      721 gacggcgcgg gacaggattt cttcaatttc catccacata atgccccctt acagcaaacc
      781 gggctggccg agtgcggggt cggtcgcgcg ggcggcttgt gcgtcttcga cagtcagtcc
      841 gagggctttt gccacgcctt cgccgtatgc cggatcgcaa cggtagcagt tgcggatatg
      901 gcggtatttg atgaagtcgg gcgcgtcgcc cattgcggcg gcggtgttgc cgaacaatgc
      961 ctgtttctgc gcgtcgttca tcaggttgaa cagggcgcgc ggttggctga aatagtcgtc
     1021 atcgtcttgg cggtagtccc agtgcgccgc gtcgccgttg attttcaaag gcggttcggc
     1081 gaagtcgggt tgttgctgcc attggccgaa gctattgggt tcgtagtgcg gcaggctgcc
     1141 gtagttgccg tcggcgcgtc cttgtccgtc gcgctggttg ctgtgaacag ggcaacgcgg
     1201 acggttgaca gggatttggc ggaagttcac gcccaagcgg tagcgttgcg cgtcggcgta
     1261 attgaacaaa cgggcttgca acattttatc tgggctcgcg ccgataccgg gaacgaggtt
     1321 gctcggtgcg aaggcggatt gttccacatc ggcgaagaag ttttcgggat tgcggttcaa
     1381 ctcgaattcg cccacttcaa tcagcggata gtcttttttc ggccaaactt tggtcaagtc
     1441 aaacggatga taaggtactt tttccgcgtc tgcttcaggc atgacttgga tgtacatcgt
     1501 ccatttcgga aactcgccgc gttcgatggc ttcgtataag tcgcgctgat ggctttcgcg
     1561 gtcgtcggcg atgattttgg cggcttcttc gttggtcagg tttttaatgc cttgttgggt
     1621 gcggaaatgg aatttcaccc aaaaacgctc gcctgcttcg ttccagaagc tgtaggtatg
     1681 cgaaccgaag ccgtgcatat ggcggtagcc ggcggggatg ccgcggtcgc tcatcacgat
     1741 ggtaacttgg tgcagtgctt cgggcagcag cgtccagaag tcccagttgt ttgtggcaga
     1801 gcgcatattg gtgcgcgggt cgcgtttgac ggctttgttc aggtcgggga acttacgcgg
     1861 gtcgcgcagg aagaacacgg gcgtgttgtt gccgaccaca tcccagttgc cttcttcggt
     1921 atagaacttc aaggcaaagc cgcggatgtc gcgttccgca tcggctgcgc cgcgttcgcc
     1981 tgccacggtg gtgaaacggg cgaacatctc ggtttttttg ccgacttcgc tgaagatttt
     2041 ggcgcgggtg tatttggtga tgtcgtgcgt tacggtaaac gtaccgaacg cgcccgaacc
     2101 tttggcgtgc atacggcgtt cggggatgac ttcgcgcacg aagtcggcga gtttttcatt
     2161 cagccacaaa tcctgcgcca gcagagggcc gcgaggaccg gcggtcaggc tgttttgatt
     2221 gtcggcaaca ggcgcgccgt tgttcatggt cagatgggtt acggggcatt tggaggtagt
     2281 catcgctctt gttccttttc tcaggttggt caaatggggg taaacggctt acagtacgat
     2341 ttggcggaaa gcgtattcgt aaccggtttc ttgattgcaa taaatttctt gaatcgacat
     2401 tttgtttccc ttttgtaaaa actatggatg cgactatacg ccaagatttt cgctattaaa
     2461 actatgaaat cgatttaata ttattataag caatcggttc ttgattttcg tttgtttttt
     2521 gttatcgaac ggaatccgaa cccgctcatt aaaaccattt ataatgcaat gacgctttgc
     2581 ggcatttttt gcgccgacag gctgaaaata acaattttcc ccacattatc atgaccttac
     2641 tcggaataaa gctcaaacag acccagcagc tcaaccagcg gctgcaacaa tctttgcgcg
     2701 tattgcagat gtcgggtatc gaacttgaac gcgaggtcga aaactggctg tcggacaacc
     2761 ccctgctcga acgcaaagac acggatgaat tttccgatgc taggttttcc cattacaccg
     2821 cgcctgcccg tcaaatcggc ggagacgaag gcgaagatat gctgtccaac atcgccggtg
     2881 agcaggattt caagcaatac ctgcacgcgc aagtatgcga acacccgctt tccgaccaag
     2941 aagccgcctg tgtccacatc cttatcgatt tccttgacga gcagggttat ctgaccgaca
     3001 gcatcgaaga catcctcgac catacgccct tagagtggat gttggatgaa gcaatgctgc
     3061 aacacgcgct gaccgcattg aaaaaattcg acccggcagg cgtggccgcc gccgatttga
     3121 acgaatcgct gatactgcag atagaaagat cgggcgaatg tgctgccaaa cccgccgccc
     3181 tgcatatcgt ccgaaacgcc ctcgacagca ttgacggcaa ccgcagccaa accctcgcac
     3241 gaataaaaaa acacctgccc caaaccgaca gcggcacact cgaagccgca ctcgacctca
     3301 ttgcttcgct caatcccttt cccgccgccg gttttgcctc gtccacaccc acgccgtatt
     3361 ctgacgaggc actcgccaac ctgctggctt tccgcggcat ggaggtttct cgccgcacca
     3421 ttgccaaata cagagaatcc cttgagattc cggcagcaca caaacgcaaa accgcagaat
     3481 aattgctgaa taatcttata aagacaacaa accaaaagcc ggcatttctg cgaaagcggg
     3541 aatgccgaat ccgtccgcgc ggaaacctgc atcccgtcat tcccgcgaaa gagggaatct
     3601 agaaac
//
LOCUS       DAXIFD010000174         3599 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.174, whole genome shotgun sequence.
ACCESSION   DAXIFD010000174 DAXIFD010000000
VERSION     DAXIFD010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.174"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1737
                     /locus_tag="ACFOCN_001835"
     CDS             <1..1737
                     /locus_tag="ACFOCN_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFC6970934.1"
                     /translation="RDGVRESGQVRRSTANIERVEILKGPSSVLYGRTNGGGVINMVS
                     KYANFKQSRNIGAVYGSWANRSLNMDINEVLNKNVAIRLTGEVGRANSFRSGIDSKNV
                     MVSPSITVKLDNGLKWTGQYTYDNVERTPDRSPTKSVYDRFGLPYRMGFAHRNDFVKD
                     KLQVWRSDLEYAFNDKWRAQWQLAHRTAAQDFDHFYAGSENGNLIKRNYAWQQTDNKT
                     LSSNFTLNGDYTIGRFENHLTVGMDYSREHRNPTLGYSRAFTASIDPYDRASWPASGR
                     LQPILTQNRHKADSYGIFVQNIFSATPDLKFVLGGRYDKYTFNSENKLTGSSRQYSGH
                     SFSPNIGAVWNINPVHTLYASYNKGFAPYGGRGGYLSINTSSSAVFNADPEYTRQYET
                     GVKSSWLDDRLSTTLSAYQIERFNIRYRPDEQNDPYTWAVGGKHRSRGVELSAIGQII
                     PKKLYLRGSLGVMQAKVVEDKENPDRVGIHLNNTSNVTGNLFFRYTPTENLYGEIGVT
                     GTGKRYGYNSRNKEVTTLPGFARVDAMLGWNHKNVNITFAAANLLNQKYWRSDAMPGA
                     PRTYTARVNYSF"
     gene            1940..2599
                     /locus_tag="ACFOCN_001836"
     CDS             1940..2599
                     /locus_tag="ACFOCN_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HFC6970935.1"
                     /translation="MKTAILIDGAFFIKRVRSLGLSQNPHDAKRIADLAFRYSMLHLK
                     DKINGTDQMDDLYRIFFYDCVPFEKKMHNPVSHRAIDFSKTPEAIFRCNLHTELKKKR
                     KLALRLGKLSDNTAWILKPQVMKNLLKNPSTQITENDVVLDVKQKGVDMRIGLDISSI
                     TLKKQADKIILFSGDSDFVPAAKLARREGIDFILDPMWNHVPPDLMEHIDGLKTKCPK
                     P"
     gene            2770..3465
                     /locus_tag="ACFOCN_001837"
     CDS             2770..3465
                     /locus_tag="ACFOCN_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HFC6970936.1"
                     /translation="MKLKTLALTSLTLLALAACSKQAETSVPADSAQSSSSAPAAPAE
                     LNEGVNYTVLSTPIPQQQAGKIEVLEFFGYFCPHCAHLEPVLSEHIKTFKDDTYMRRE
                     HVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
                     DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQ
                     LVDKVREEQKKPQ"
BASE COUNT         1047 a          928 c          808 g          816 t
ORIGIN      
        1 cgcgacggcg tgcgcgaaag cggacaagtg cgccgcagta ctgccaacat cgagcgcgtg
       61 gaaatcctga aaggcccgtc ttccgtgctt tacggccgca ccaacggcgg cggcgtcatc
      121 aacatggtca gcaaatacgc caacttcaaa caaagccgca acatcggtgc ggtttacggt
      181 tcgtgggcaa accgcagcct gaatatggac attaacgaag tgttgaacaa aaacgtcgcc
      241 atccgtctca ccggcgaagt cgggcgcgcc aattcgttcc gcagcggcat agacagcaaa
      301 aatgtcatgg tttcgcccag cattaccgtc aaactcgaca acggcttgaa gtggacgggg
      361 caatacacct acgacaatgt ggagcgcacg cccgaccgca gtccgaccaa gtccgtgtac
      421 gaccgcttcg gactgcctta ccgcatgggg ttcgcccacc ggaacgattt tgtcaaagac
      481 aagctgcaag tttggcgctc cgaccttgaa tacgccttca acgacaaatg gcgtgcccaa
      541 tggcagctcg cccaccgcac ggcggcgcag gattttgatc atttctatgc aggcagcgaa
      601 aatggcaact taatcaaacg taactacgcc tggcagcaga ccgacaacaa aaccctgtcg
      661 tccaatttca cgctaaacgg cgactacacc atcggccgtt ttgaaaacca cttgaccgta
      721 ggcatggatt acagccgcga acaccgcaac ccgaccttag gttacagccg cgcctttact
      781 gcttccatcg atccatacga ccgagcaagc tggccggctt cgggcagatt gcagcctatc
      841 ctcacccaaa accgccacaa agccgactcc tacggcatct ttgtgcaaaa catcttctcc
      901 gccacgcccg atttgaaatt cgtcctcggc ggtcgttacg acaaatacac ctttaattcc
      961 gaaaacaaac tcaccggcag cagccgccaa tacagcggac actcgttcag ccccaacatc
     1021 ggcgcagtgt ggaacatcaa tcccgtccac acactttacg cctcgtataa taaaggcttc
     1081 gcgccttatg gcggacgcgg cggctatttg agcatcaaca cgtcgtcttc cgccgtgttc
     1141 aacgccgacc ccgagtacac ccgccaatac gaaaccggtg tgaaaagcag ttggctggac
     1201 gaccgcctca gcactacgtt gtctgcctac caaatcgaac gcttcaatat ccgctaccgc
     1261 cccgacgagc aaaatgatcc ctacacttgg gcagtcggcg gcaaacaccg ttcgcgcggc
     1321 gtggaattgt ccgccatcgg gcaaatcatc cccaaaaaac tctatctgcg cggttcgttg
     1381 ggcgtgatgc aggcgaaagt cgttgaagac aaagaaaatc ccgaccgagt gggcatccat
     1441 ttgaataaca ccagcaacgt taccggcaac ctgtttttcc gttatacccc gaccgaaaac
     1501 ctctacggcg aaatcggcgt aaccggtaca ggcaaacgct acggttacaa ctcaagaaat
     1561 aaagaagtga ctacgcttcc aggctttgcc cgagttgatg ccatgcttgg ctggaaccat
     1621 aaaaatgtta acattacctt tgccgcagcc aatctgctca atcaaaaata ttggcgttcg
     1681 gatgccatgc ccggcgcgcc gcgcacttat acggcgcggg ttaattacag tttctaatcc
     1741 cgttcgtgca acagaatgcc gtctgaaaat cctgataatc cgtaaattca gcacacgaac
     1801 tttttgacag gctttatcta catcagtata atccaaaaag aaatagcgcc cttggcagta
     1861 cgcattaccc attaaatcat agcgggtatg ccgatcccaa gggctttttt atatctttga
     1921 caaatatagg ggaagcaata tgaaaaccgc cattttgatt gacggtgcat tttttattaa
     1981 gcgggtacgg tcattaggcc tgtctcaaaa tccacacgat gcaaaaagaa ttgctgattt
     2041 ggctttccga tattcgatgc tgcatctgaa agataaaatc aacggcacag atcaaatgga
     2101 tgatttatat agaattttct tttacgactg cgtgccgttt gaaaagaaaa tgcacaatcc
     2161 cgtatctcat cgtgccatag atttttcaaa gactccggaa gccatatttc gttgcaatct
     2221 gcataccgaa ttgaagaaga agcgtaaatt agcgttacgt ttaggcaagc tgtcggacaa
     2281 tacagcatgg atattaaaac cccaagtcat gaaaaatctt ctgaaaaacc cgtcaactca
     2341 aattacggaa aacgatgtcg tgctcgatgt taaacaaaaa ggtgtagata tgcgtatagg
     2401 cttggatatt tcatctatta ccttaaaaaa acaagccgat aaaatcatct tgttttctgg
     2461 tgattccgat tttgtcccag cagccaaatt agccagacgg gaaggtatcg attttattct
     2521 tgatcctatg tggaatcatg tcccacctga cttaatggaa cacatcgacg gattgaagac
     2581 aaaatgtccg aaaccgtaaa ttactagaac aaaggccgtc tgaaaataag gctaattatc
     2641 taagccatat ttcagacggc ctttataaag gctgaaataa aactaaacac attttttcac
     2701 tcaaatcgaa cacgccttca ataaaatgcc ataaaatccg cacattaatc tgacacacaa
     2761 gagataccta tgaaactgaa aaccttagct ttgacttcat tgaccctgtt ggcattggcc
     2821 gcttgtagca aacaggctga aaccagtgtt ccggcagaca gcgcccaaag cagctcatct
     2881 gctccggcag cccctgctga gttgaacgaa ggtgtgaact acactgtatt gtctacgcct
     2941 attccgcaac agcaggccgg taaaatcgaa gtattggaat ttttcggcta cttctgcccg
     3001 cattgcgccc atcttgagcc ggtcttgagc gagcacatca aaacgtttaa agacgatacc
     3061 tatatgcgcc gggagcatgt cgtgtggggt gatgaaatga aacctttggc acgtttggcg
     3121 gccgcagtgg aaatggccgg tgaatcagat aaagccaaca gccatatttt cgatgcgatg
     3181 gttaatcaaa aaatcaatct ggccgatacc gataccctga aaaaatggct gtccgagcaa
     3241 acagcgtttg acggcaaaaa agtattggct gcatttgagg ctcctgaaag ccaagcgcgt
     3301 gcggctcaaa tggaagagtt gaccaataaa ttccaaatca gcggcacacc gactgtgatt
     3361 gtcggcggca aataccaagt tgaatttaaa gactggcagt ctggtatgac cacgattgac
     3421 cagttggtgg ataaagtacg cgaagagcag aaaaagccgc aataagttga ggattgaatg
     3481 agtaaaggcc atctgaaaat aggatttcag acggcctttt gtatttaggc tttatagaag
     3541 agatgattgc ttaaagcctt atggttttaa atcagaatat atagcggatt aacaaaaac
//
LOCUS       DAXIFD010000175         3586 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.175, whole genome shotgun sequence.
ACCESSION   DAXIFD010000175 DAXIFD010000000
VERSION     DAXIFD010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3586
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.175"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..141
                     /locus_tag="ACFOCN_001838"
     CDS             <1..141
                     /locus_tag="ACFOCN_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contact-dependent growth inhibition system
                     immunity protein"
                     /protein_id="HFC6970937.1"
                     /translation="CLKISPSRHVKLEAWDAIDADDVILSLDNSPEEIGAGLKLALSR
                     CR"
     gene            complement(274..654)
                     /locus_tag="ACFOCN_001839"
     CDS             complement(274..654)
                     /locus_tag="ACFOCN_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HFC6970938.1"
                     /translation="MNIRFFALTVPVLSLAACAVPEAYDDGRRGYMPPVQNQAGPNDF
                     RAFSCENGLSVRVRRLDGGKIALRLDGRRAVLSSDVAASGERYTAEHGLFGNGTEWHQ
                     KGGEAFFGFTDAYGNSVETSCRAR"
     gene            1130..3211
                     /locus_tag="ACFOCN_001840"
     CDS             1130..3211
                     /locus_tag="ACFOCN_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HFC6970939.1"
                     /translation="MKSLKTFLIWGIVVLVGLASFTTLALSRGEQVSAVWMVTAAISV
                     YCIAYRFYSLYIANRVMRLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELGTVPG
                     VIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMGIYTRYIRPGKI
                     GEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMIYGFVASVLPVWLLLT
                     PRDYLSTFLKIGTIAALALGIVIVNPTLQMPAVTHFIDGSGPVFSGALFPFLFITIAC
                     GAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASLDPGVYFAM
                     NSPAALIGTDANTAAEVITTKLQFPVDAATLLHTAKEVGENTILSRAGGAPTLAVGMA
                     HIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQDLGSIFYKPFGNTD
                     SIPANLIATFFAVALWGYFLYTGVTDPLGGINSLWPLFGIANQMLAGVALIMCAVVLI
                     KMKRDRYVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGKYSDALAKNEVLAP
                     AKDIGEMAQIIFNDKINAGLTILFLSVVVIVAAYGLRTALKARKVGWPTAKEIPAVYR
                     DSKQPEAQSEA"
     gene            3201..3395
                     /locus_tag="ACFOCN_001841"
     CDS             3201..3395
                     /locus_tag="ACFOCN_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HFC6970940.1"
                     /translation="MKHKLSSWWKTIKLTANLMAGVPDYENYVAQQRKHNPNAPVMTK
                     LQFQDYCRKRRCGANGGRCC"
BASE COUNT          812 a         1045 c          901 g          828 t
ORIGIN      
        1 tgcctgaaaa tcagcccgag ccgccatgtc aagctggaag cgtgggatgc cattgatgca
       61 gacgatgtca ttttatcatt ggataacagc cctgaagaaa tcggagcagg tttaaagttg
      121 gcattgagcc gctgccgata ggataaaccc ggaacgaaac gaaaaataat ccgccacgcc
      181 cgaaaaccgc cgaaaccagc cgacagccaa aacaaatccg acacaaaaaa ccgcccgaaa
      241 aatccggacg gcggttcaaa caggctgccc cgtttaacgg gcgcggcagg aagtttcgac
      301 cgaattgccg taggcatcgg taaagccgaa aaaggcttcg ccgcctttct ggtgccactc
      361 ggttccgttt ccaaacaaac cgtgttcggc ggtatagcgt tcgccggatg cggcaacgtc
      421 ggaagagagg acggcacgcc tgccgtccag ccgcaacgcg attttgccac cgtccaaacg
      481 gcggacgcgc acagacaaac cgttctcgca tgaaaacgcc cgaaaatcgt tcgggccggc
      541 ttggttttga acaggcggca tatacccgcg tctgccgtca tcatacgcct ccggcacggc
      601 acaggccgcc aaagacaaaa ccggtacggt cagcgcgaaa aacctgatat tcataaaagc
      661 tccccaataa aaataagata tgaaacaacc gccctgattc caagctgcgg caacgccata
      721 ctataaacgg acgcgcaaac acacaagccc gataaccgga atttacccgc gatgaatcaa
      781 taatccggat tgcgcgcccc ttctttaccc gtcttccggc gccgcctttt gcctgacgat
      841 gccatccaaa cccgcctgtc cgcccgaagg aatgtaaatt ttttccaaat tccaagtaaa
      901 aaccgctatc agtgtgctaa tttgcgttaa aatcctattc ggcgtttaac gttttgtgcg
      961 cccgcatccc tgcactgttt gatgcgggca taaggcacaa atcccgacaa gcgcactgtt
     1021 tcatacttcg tcaatcattc agactccggt ttgtgcccgt gccggcaggc ggtcatccgt
     1081 ttcccgccgt tcaggcatat tccgacagtg tgagataagg atttattcga tgaaatcact
     1141 caaaaccttc ctcatttggg gcatagtggt actggtcggc ttagcatcct ttaccactct
     1201 ggctctcagc cgaggcgaac aggtcagcgc ggtatggatg gttaccgccg ccatatccgt
     1261 ttactgcatc gcctaccgtt tttacagcct ctacatcgcc aaccgcgtaa tgcggctcga
     1321 tcctaaccgc ctgactccgg cagaacgcca caacgacggc ttggactacg ttccgacgca
     1381 caagggcgta ttgttcggac accactttgc cgcgattgcc ggcgcgggcc ctttggtcgg
     1441 ccctgtactg gctgcgcaaa tgggttacct gcccggtact ttgtggatta tcttcggcgt
     1501 ggtttttgcc ggcgcggtac aggatatgat ggtactgttt gtttctatgc gccgtgacgg
     1561 taagtctttg ggcgatattg tgaaacagga actcggcact gtccccggcg tgattgcctc
     1621 catcggtatt ttgatgatta tggtcatcat tatggcggtg ttggcgttga ttgtcgtaaa
     1681 agcacttgtt cacagccctt ggggtacgtt taccatcgcc gccactatgc cgattgccct
     1741 gtttatgggt atttacacgc gctatatccg tccgggcaaa atcggcgaga tttccatcgt
     1801 cggctttatt ttgctgatgc tggcggtaat ttacggcgaa gatgtggcga aaagttccat
     1861 cggacattgg ttcgaccttg acggcatcca gctcacttgg gcgattatga tttacggctt
     1921 tgtcgcctcc gtattgcccg tatggttgct gctcactccg cgcgactatc tctccacctt
     1981 cctgaaaatc ggtacgattg cggccttggc tttgggcatc gtcatcgtca atcccacttt
     2041 gcaaatgcct gccgtaaccc actttatcga cggttcgggt ccggtattct caggcgcatt
     2101 gttcccgttc ctcttcatca ccatcgcctg cggtgcggtt tcgggcttcc acgcgctgat
     2161 ttcctccggc accacgccga aaatgctgga aaacgaaacc cacgtccgta tgattggtta
     2221 cggcggtatg ttgatggaaa gtttcgtagc cattatggcg cttgccgccg ccgcatcgct
     2281 tgatcccggc gtgtacttcg ccatgaacag ccctgccgcc ctgatcggta cggatgccaa
     2341 caccgccgcc gaagtgatta ccaccaagct gcaattccct gtcgatgcgg caaccctgtt
     2401 gcataccgct aaggaagtgg gcgaaaacac catcctttcc cgtgcaggcg gtgcgccaac
     2461 cctcgcagtc ggtatggcgc acattatgag ccgcctgatt ccgggcgagg cgatgatggc
     2521 gttctggtat cacttcgccc tattgtttga agccttgttc atcctgaccg ccgtcgatgc
     2581 cggtacgcgc gtcgcacgtt ttatgattca agacttgggc agcatcttct acaaaccttt
     2641 cggcaacacc gactccatcc ccgccaacct gattgcgacc ttcttcgccg tggcattgtg
     2701 gggctacttc ctctacaccg gcgtaaccga cccgctgggc ggcatcaact cgctctggcc
     2761 tttgttcggc atcgccaacc aaatgctggc aggcgtggcc ttgattatgt gcgccgtggt
     2821 gctgattaag atgaaacgcg accgttatgt ttgggtggta ctcgttcccg ccgtcggcgt
     2881 actgttcgta acctgctacg ccggcctgca aaaactgttc cacagcgacc cgcgcatcag
     2941 cttccttgcc cacgccggca aatacagcga cgcattggct aaaaacgaag tccttgcgcc
     3001 tgccaaagac atcggcgaaa tggcgcaaat catcttcaac gacaagatta atgccggtct
     3061 gaccatcctc ttcttgtcgg ttgtcgtgat tgtcgccgcg tacggtttgc gtaccgccct
     3121 caaagcacgc aaagtcggct ggccgaccgc caaagaaatc ccggcggtgt accgcgacag
     3181 caaacagccg gaggcacaaa gtgaagcata agctctcgtc ttggtggaaa accatcaagc
     3241 tgacagcaaa cttgatggca ggcgtgcccg attatgaaaa ctacgttgca cagcagcgca
     3301 aacataatcc caacgcccct gtgatgacca agctgcagtt tcaagactat tgccgcaaac
     3361 gtcgctgcgg cgcaaacggc ggacgctgct gttaagcctg cttgaaacaa attccgtctg
     3421 aacgccgctt cagacggaat ttttataata tagtggatta acaaaaatca ggacaaggcg
     3481 acgaagccgc agacagtaca aatagtacga aaccgattca cttggtgctt cagcacctta
     3541 gagaatcgtt ctctttgagc caaggcgaga caacgccgta ctggtt
//
LOCUS       DAXIFD010000176         3434 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.176, whole genome shotgun sequence.
ACCESSION   DAXIFD010000176 DAXIFD010000000
VERSION     DAXIFD010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.176"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..158)
                     /locus_tag="ACFOCN_001842"
     CDS             complement(<1..158)
                     /locus_tag="ACFOCN_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6970941.1"
                     /translation="MSTFFQQTAQAMIAKHIDCFPLLKLDQVIDWQPIEQYLNRQRTR
                     YLRDHRGRP"
     gene            complement(382..2610)
                     /locus_tag="ACFOCN_001843"
     CDS             complement(382..2610)
                     /locus_tag="ACFOCN_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0030256 - type I protein secretion system
                     complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HFC6970942.1"
                     /translation="MRSAVLFIYFFLLNIFLFQPAVIHIQSNYILFMSIVSAPLPALS
                     ALIILAHYHGIAANPADIQHEFCTSAQSDLNETQWLLAAKSLGLKAKVVRQPIKRLAM
                     ATLPALVWCDDGNHFILAKTDGEGEHAQFLIQDLVTNKSAVLSFAEFSNRYSGKLILV
                     ASRASVLGSLAKFDFTWFIPAVIKYRRLFFEVLVVSVVLQLFALITPLFFQVVMDKVL
                     VHRGFSTLDVVSVALLVVSLFEIVLGGLRTYLFAHTTSRIDVELGARLFRHLLSLPLS
                     YFEHRRVGDTVARVRELEQIRNFLTGQALTSVLDLAFSFIFLAVMWYYSSTLTWVVLA
                     SLPAYAFWSAFISPILRTRLNDKFARNADNQSFLVESITAVGTVKAMAVEPQMTQRWD
                     NQLAAYVASGFRVTKLAVVGQQGVQLIQKLVTVATLWIGARLVIEGKLTVGQLIAFNM
                     LSGQVAAPVIRLAQLWQDFQQVGISVARLGDILNAPTENASSHLALPDIRGEITFEHV
                     DFRYKADGRLILQDLNLRIRAGEVLGIVGRSGSGKSTLTKLVQRLYVPEQGRVLVDGN
                     DLALAAPAWLRRQVGVVLQENVLLNRSIRDNIALTDTGMPLERIIEAAKLAGAHEFIM
                     ELPEGYGTVVGEQGAGLSGGQRQRIAIARALITNPRILIFDEATSALDYESERAIMQN
                     MQAICANRTVLIIAHRLSTVKTAHRIIAMDKGRIVEAGTQQELLAKPNGYYRYLYDLQ
                     NG"
     gene            complement(3315..>3434)
                     /locus_tag="ACFOCN_001844"
     CDS             complement(3315..>3434)
                     /locus_tag="ACFOCN_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6970943.1"
                     /translation="KYNEIDRKSFPLFLKECKFRFNFGTPSRQLKILRDWCGI"
BASE COUNT          977 a          908 c          782 g          767 t
ORIGIN      
        1 ggacggccgc ggtggtctct gaggtaacgg gttctttgac ggttcaggta ttgttcgatc
       61 ggctgccaat caattacctg gtccaacttc aatagtggga agcagtcgat gtgcttggca
      121 atcatggctt gcgcggtttg ttgaaagaag gtgctcatgg aaaatcccct aaatgtcttg
      181 gtgggaattt aggggatttt ggggaatttt gcaaaggtct ctagatgagt gaaaaagaag
      241 tgcaggctgc ctaaaaagac agaaaaagtc tttccggcag cctgcacttt ggtttcattt
      301 cagtcagtaa acccagtaaa cgacggtctg aaaacgcaga acgttacgaa aaaagcagcc
      361 tacacgccca tcccccgcct tctacccgtt ctgtaaatca tacagatagc ggtaatatcc
      421 gttcggcttc gccagcaatt cctgctgtgt tcccgcttcc acaatcctgc ctttatccat
      481 ggcaatgatc cggtgtgccg ttttaacagt ggacagacgg tgggcgataa tcagcaccgt
      541 ccggttggcg caaatggcct gcatgttctg cataatcgct cgttcacttt cataatccag
      601 cgcgctggtg gcttcatcaa aaatcagaat gcgcggattg gtgattaacg cgcgggcaat
      661 cgcaatacgc tgccgctgtc cgcccgacaa gccggcccct tgttcgccca ccacggtgcc
      721 gtagccttcc ggcagctcca taataaactc gtgtgcgccc gccagtttgg ctgcttcgat
      781 aatgcgttcc agcggcatac ccgtatccgt cagcgcgata ttgtcgcgta tgctgcggtt
      841 gagcagcaca ttctcctgca agaccacgcc gacctgccgc cgcagccagg caggagcggc
      901 caaagccaaa tcgttgccgt ccaccaacac ccgtccctgc tccggtacat acagacgctg
      961 caccaatttg gtgagtgtgg atttgcccga ccccgaacgt cccacaatcc ccagcacttc
     1021 ccccgcccga atccgcaggt tcaaatcctg caaaatcagc ctgccgtccg ccttatagcg
     1081 gaaatcgaca tgttcgaacg taatctcccc ccggatatcg ggcaaagcca aatgcgaaga
     1141 cgcattctcg gtcggcgcat tcagaatatc ccccaaacgc gccaccgaaa tccccacctg
     1201 ctggaaatcc tgccacaact gcgccaaacg gataacaggc gccgccacct gtcccgagag
     1261 catattaaac gcaatcagct gccccaccgt cagcttgccc tcaattacca gccgtgcgcc
     1321 aatccacaac gtcgccaccg tcaccagctt ctgaatcagc tgcaccccct gctggccgac
     1381 caccgccaac ttcgttaccc gaaatcccga agccacataa gccgccaact gattgtccca
     1441 acgctgcgtc atctgcggct ccaccgccat cgcctttacc gtacccaccg cagtgatgct
     1501 ttctactaaa aacgactggt tgtctgcatt gcgcgcgaac ttatcgttca gacgcgtccg
     1561 cagtatcgga ctgataaatg ccgaccaaaa cgcataggca ggcaacgaag ccaataccac
     1621 ccaagtcaga gtggagctgt aataccacat caccgccaga aagataaacg aaaacgccaa
     1681 atccaacacc gaagtcagcg cctgaccggt caagaaattg cgaatctgct ccaattcccg
     1741 cacccgagcc accgtatcac ccactcgtct gtgctcgaaa taggataaag gcagggaaag
     1801 cagatgccgg aacaaacgcg cgcccaattc cacatcaata cgtgaagtcg tatgtgcaaa
     1861 cagatacgtc cgcaaaccgc ccaacacaat ctcaaacagc gacaccacca acaaagccac
     1921 cgacaccaca tccaaagtag agaatccccg atgtaccagc accttgtcca tcaccacttg
     1981 gaaaaacaga ggcgtaatca gcgcaaacag ctgcaacacc accgacacca ccaatacttc
     2041 aaaaaacaac cggcggtatt tgattaccgc cggaataaac caggtaaagt caaactttgc
     2101 caaactgccc aataccgaag cgcgggaagc aaccaatatc agtttgcccg aatatctgtt
     2161 agaaaattcg gcaaaagaca ataccgcaga cttattcgta accaaatcct gtatcaaaaa
     2221 ttgggcatgc tcaccctcac cgtctgtttt ggccaaaatg aaatggttgc cgtcatcaca
     2281 ccataccaat gcgggtaaag tcgccatagc caaacgttta ataggctggc ggactacctt
     2341 tgccttcaat cccaaagatt tggcggctaa cagccattgc gtttcattta aatcgctctg
     2401 tgcggaagta caaaattcat gctgtatatc ggcaggattg gcggcaatgc cgtggtaatg
     2461 ggcgaggatg atgagggcgg aaagggcggg gagcggtgcg gatacgatag acataaataa
     2521 aatatagtta gattggatgt ggataacggc tggctggaaa aggaatatat taagtagaaa
     2581 gaaatatata aataaaacag cagaacgcat tgtaaggata tatatgggaa ttgtaaagag
     2641 aaagtatgga aaagttctcg tttcaggaag gtaaaacggc ttaggaatcg agttagatga
     2701 ggatgcctcg cacctctcgt gcctcctgca taccgttaag gcacagggtt aaggtgcagg
     2761 ctgctccgaa ctctgttgcg gtcgggtaat gttatttttt gtgtttcagg cagcctgaaa
     2821 tatctgtata tttttgtttt aaatagattt taaagattga taactgttct tgacgatttt
     2881 tcaagaaagg agtaaatttc aagaaaggag taaagtgact tattatcaat gacaagcaac
     2941 gcgcgaagtg acaaggaaaa ctatctactt aaattctaag gaggcttcga atatcataaa
     3001 ccaatcagaa acatagagat aaaaattatg tacaaatata atcctcttat acaatttatt
     3061 gcacagttga ttatgtctta tggagcaagc gtagggtggg cacttgctgc cccacgcgtt
     3121 tcatatttca aggcagcctg aaaccgtgtg ggcataaatg cctaccctac atcccaaaaa
     3181 acaagcgcag cctgcgtgtg tagggtgcga actttcggca ggtagacacg cggttttata
     3241 gtttcaagct gagttgggat gcttaagata aagtacaaaa ccttaaaaaa taagggggct
     3301 gtactagatt agccctaaat tccacaccaa tcccgcaaaa tttttagctg tcgggacggt
     3361 gtgccgaagt taaaccgaaa tttgcattct ttcaagaaca gcgggaaaga tttacgatca
     3421 atttcgttgt attt
//
LOCUS       DAXIFD010000177         3427 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.177, whole genome shotgun sequence.
ACCESSION   DAXIFD010000177 DAXIFD010000000
VERSION     DAXIFD010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3427
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.177"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            314..3079
                     /gene="tdfH"
                     /locus_tag="ACFOCN_001845"
     CDS             314..3079
                     /gene="tdfH"
                     /locus_tag="ACFOCN_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc piracy receptor TdfH"
                     /protein_id="HFC6970944.1"
                     /translation="MRSSFRLKPICFYLMGVMLYHHSYAEDAGRAGSEAQIQVLEDVH
                     VKAKRVPKDKKVFTDARAVSTRQDIFKSSENLDNIVRSIPGAFTQQDKSSGIVSLNIR
                     GDSGFGRVNTMVDGITQTFYSTSTDAGRAGGSSQFGASVDSNFIAGLDVVKGSFSGSA
                     GINSLAGSANLRTLGVDDVVQGNNTYGLLLKGLTGTNSTKGNAMAAIGARKWLESGAS
                     VGVLYGHSRRSVAQNYRVGGGGQHIGNFGAEYLERRKQQYFVQTGGLKFNSNSGKWER
                     DLQRQFWKTSYYKQYKDPQKLKKYIEDQDKDWRENLAPQYDITPIDPSSLKQQSAGNL
                     FKLEYDGVFNKYTAQFRDLNTKIGSRKIINRNYQFNYGLSLNSYTNLNLTAAYNSGRQ
                     KYPKGSKFTGWGLLKDFETYNNAKILDLNNTATFRLPRETELQTTLGFNYFHNEYGKN
                     RFPEELGLFFDGPDQDNGLYSYLGRFKGDKGLLPQKSTIVQPAGSQYFNTFYFDAALK
                     KDIYRLNYSTNTVGYRFGGEYTGYYSSEGEFKRAFGENSPTYKKHCNPSCGLYEPVLK
                     KYGKKRANNHSVSISADFGDYFMPFASYSRTHRMPNIQEMYFSQIGDSGVHTALKPER
                     ANTWQFGFNTYKKGLLKQDDTLGLKLVGYRSRIDNYIHNVYGKWWDLNGDIPSWVSST
                     GLAYTIQHRNFKDKVHKHGFELELNYDYGRFFTNLSYAYQKSTQPTNFSDASESPNNA
                     SKEDQLKQGYGLSRVSALPRDYGRLEVGTRWLGNKLTLGGAMRYFGKSIRATAEERYI
                     DGTNGGNTSNFRQLGKRSIKQTETLARQPLIFDFYAAYEPKKNLIFRAEVKNLFDRRY
                     IDPLDAGNDAATQRYYSSFDPKDKDEDVTCNADGLCNGKYGGTSKSVLTNFARGRTFL
                     MTMSYKF"
     gene            3122..3364
                     /locus_tag="ACFOCN_001846"
     CDS             3122..3364
                     /locus_tag="ACFOCN_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970945.1"
                     /translation="MPSESPSDGICFPKRIILPQAYANPFYRIGNSKKNPFHSHAGKP
                     VFDFGYFWLFRVIYESSFPQKRESRHSMLRQFIEND"
BASE COUNT          974 a          846 c          828 g          779 t
ORIGIN      
        1 gcctgcgcgg gaatgacggc tgcagatgcc cgacggtctt tatagcggat taataaaaat
       61 caggacaagg cggcgagcca cagacagtac aaacagtacg gaaccgattc acttggtgct
      121 tcagcacctt agagaatcgt tctctttgag ctaaagcgag acaacgctgt actggttttt
      181 gttaatccac tataaatatc caattgaaat cttcagacgg tatatcaaat ttacactttt
      241 ttaatgttta tgccgcctga aaaaaatgct agtatatttc ctaattgtct gactgtttat
      301 tgttgaggaa aatatgagat cttctttccg gttgaagccg atttgttttt accttatggg
      361 tgttatgcta tatcatcata gttatgccga agatgcaggg cgcgcgggca gcgaggcgca
      421 gatacaggtt ttggaagatg tgcacgtcaa ggcgaagcgc gtaccgaaag acaaaaaagt
      481 gtttaccgat gcgcgtgccg tatcgacccg tcaggatata ttcaaatcca gcgaaaacct
      541 cgacaacatc gtacgcagca tccccggtgc gtttacacag caagataaaa gctcgggcat
      601 tgtgtctttg aatattcgcg gcgacagcgg gttcgggcgg gtcaatacga tggtggacgg
      661 catcacgcag accttttatt cgacttctac cgatgcgggc agggcaggcg gttcatctca
      721 attcggtgca tctgtcgaca gcaattttat tgccggactg gatgtcgtca aaggcagctt
      781 cagcggctcg gcaggcatca acagccttgc cggttcggcg aatctgcgga ctttaggcgt
      841 ggatgacgtc gttcagggca ataataccta cggcctgctg ctaaaaggtc tgaccggcac
      901 caattcaacc aaaggtaatg cgatggcggc gataggtgcg cgcaaatggc tggaaagcgg
      961 agcatctgtc ggtgtgcttt acgggcacag caggcgcagc gtggcgcaaa attaccgcgt
     1021 gggcggcggc gggcagcaca tcggaaattt tggcgcggaa tatctggaac ggcgcaagca
     1081 gcaatatttt gtacaaacag gcgggttgaa attcaattcc aacagcggaa aatgggaacg
     1141 cgatttgcaa aggcaattct ggaaaaccag ttactataaa caatacaaag acccccagaa
     1201 actgaaaaaa tacatcgaag accaagataa agactggcgg gaaaacctgg cgccgcaata
     1261 cgacatcacc cccatcgatc cgtccagcct gaagcagcag tcggcaggca atctgtttaa
     1321 attggaatac gacggcgtat tcaataaata cacggcgcaa tttcgcgatt taaacaccaa
     1381 aatcggcagc cgcaaaatca tcaaccgcaa ttatcaattc aattacggtt tgtctttgaa
     1441 ctcgtatacc aacctcaatc tgaccgcagc ctacaattcg ggcaggcaga aatatccgaa
     1501 agggtcgaag tttacaggct gggggctttt aaaggatttt gaaacctaca acaacgcaaa
     1561 aatcctcgac ctcaacaaca ccgccacctt ccggctgccc cgcgaaaccg agttgcaaac
     1621 cactttgggc ttcaattatt tccacaacga atacggcaaa aaccgctttc ctgaagaatt
     1681 ggggctgttt ttcgacggtc ctgatcagga caacgggctt tattcctatt tggggcggtt
     1741 taagggcgat aaagggctgc tgccccaaaa atcaaccatt gtccaaccgg ccggcagcca
     1801 atatttcaac acgttctact tcgatgccgc gctcaaaaaa gacatttacc gcttaaacta
     1861 cagcaccaat accgtcggct accgtttcgg cggcgaatat acgggctatt acagctcgga
     1921 aggcgaattt aagcgggcat tcggagaaaa ctcgccgaca tacaagaaac attgcaaccc
     1981 gagctgcggg ctttatgaac ccgtattgaa aaaatacggc aaaaagcgcg ccaacaacca
     2041 ttcggtcagc attagtgcgg acttcggcga ttatttcatg ccgttcgcca gctattcgcg
     2101 cacacaccgt atgcccaaca tccaagaaat gtatttttcc caaatcggcg actccggcgt
     2161 tcacaccgcc ttaaaaccag agcgcgcaaa cacttggcaa tttggcttca atacctataa
     2221 aaaaggattg ttaaaacaag atgatacatt aggattaaaa ctggtcggct accgcagccg
     2281 catcgacaac tacatccaca acgtttacgg gaaatggtgg gatttgaacg gggatattcc
     2341 gagctgggtc agcagcaccg ggcttgccta caccatccaa catcgcaatt tcaaagacaa
     2401 agtgcacaaa cacggttttg agttggagct gaattacgat tatgggcgtt ttttcaccaa
     2461 cctttcttac gcctatcaaa aaagcacgca accgaccaac ttcagcgatg cgagcgaatc
     2521 gcccaacaat gcgtccaaag aagaccaact caaacaaggt tatgggttga gcagggtttc
     2581 cgccctgccg cgagattacg gacgtttgga agtcggtacg cgctggttgg gcaacaaact
     2641 gactttgggc ggcgcgatgc gctatttcgg caagagcatc cgcgcgacgg ctgaagaacg
     2701 ctatatcgac ggcaccaacg ggggaaatac cagcaatttc cggcaactgg gcaagcgttc
     2761 catcaaacaa accgaaactc ttgcccgcca gcctttgatt tttgattttt acgccgctta
     2821 cgagccgaag aaaaacctta ttttccgcgc cgaagtcaaa aatctgttcg acaggcgtta
     2881 tatcgatccg ctcgatgcgg gcaatgatgc ggcaacgcag cgttattaca gctcgttcga
     2941 cccgaaagac aaggacgaag acgtaacgtg taatgctgat ggcttgtgca acggcaaata
     3001 cggcggcaca agcaaaagcg tattgaccaa ttttgcacgc ggacgcacct ttttgatgac
     3061 gatgagctac aagttttaaa ggcagcccgc gttttgtgga aaaccgcaaa aaaaagccaa
     3121 aatgccgtct gaaagccctt cagacggcat ttgtttcccc aaacgcatca tcctgccgca
     3181 agcctatgcc aatccgtttt atcgcatcgg caactcaaag aaaaatccat ttcattccca
     3241 cgcagggaag ccggtttttg atttcggtta tttttggttg tttcgggtaa tttatgagtc
     3301 gtcattcccg caaaagcggg aatctagaca ttcaatgcta aggcaattta tcgaaaatga
     3361 ctgaaactca aaaaactgga ttcccacttt cgtgggaatg acgcggtgca ggtttccgta
     3421 tggatgg
//
LOCUS       DAXIFD010000178         3373 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.178, whole genome shotgun sequence.
ACCESSION   DAXIFD010000178 DAXIFD010000000
VERSION     DAXIFD010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.178"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..1080
                     /gene="dapA"
                     /locus_tag="ACFOCN_001847"
     CDS             205..1080
                     /gene="dapA"
                     /locus_tag="ACFOCN_001847"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HFC6970946.1"
                     /translation="MLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGT
                     TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADFTLS
                     VVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGV
                     KEASGNIGSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMC
                     RAALQGDIALARKLNDRLIPIYDTMFCEPSPAAPKWAVSALGRCEPHVRLPLVPLTEG
                     GQAKVRAALKASGQL"
     gene            1089..2285
                     /gene="bamC"
                     /locus_tag="ACFOCN_001848"
     CDS             1089..2285
                     /gene="bamC"
                     /locus_tag="ACFOCN_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HFC6970947.1"
                     /translation="MPSEPFGRHNATNTLISITQDDTMTLIKPVIAALALIGLAACSG
                     SKTEQPKLDYQSRSHRLIKLEVPPDLNNPDQGSLYRLPAGSGAVRASDLEKRRTPAVQ
                     QPADAEVLKSVKGVRLERDGSQRWLVVDGKSPAEIWPLLKAFWQENGFDIKSEEPAIG
                     QMETEWAENRAKIPQDSLRRLFDTVGLGGIYSTGERDKFIVRIEQGKNGVSDIFFAHK
                     AMKEVYGGKDKDTTVWQPSPSDPNLEAAFLTRFMQYLGVDGQQAENASAKNPTLPAAN
                     EMARIEGKSLIVFGDYGRNWRRTALALDRIGLTVVGQNTERHAFLVQKAPNESNAVTE
                     QKPGLFKRLLGKGKAEKPAEQPELIVYAEPVANGSRIVLLNKDGSAYAGKDASALLGK
                     LHSELR"
     gene            complement(2342..3274)
                     /gene="pip"
                     /locus_tag="ACFOCN_001849"
     CDS             complement(2342..3274)
                     /gene="pip"
                     /locus_tag="ACFOCN_001849"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HFC6970948.1"
                     /translation="MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAG
                     ASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIGKWL
                     VFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETAWLNEAGGVSRIYPEQWQKF
                     VAPIAENRRNRLIEAYHGLLFHQDEEVCLSAAKAWADWESYLIRFEPEEVDEDAYASL
                     AIARLENHYFVNGGWLQGDRAILNNIGKIQHIPTIIVQGRYDLCTPMQSAWALSKAFP
                     EAELRVVQAGHRAFDPPLADALVQAVEDIFPRLL"
BASE COUNT          888 a         1126 c          745 g          614 t
ORIGIN      
        1 tgttaatcca ctataaatcc gacggcaccg gcataaaccg gcgaatataa taaaatgatt
       61 tcaaacagga aaaatcaatt tccaccatac ctttcggcgc aaacgcccca catctgcaac
      121 ccgccggatt tcacacctgc ggtaaagtag gctacaatca gaagcattac cgccccctac
      181 accacaactg ataaaaggtt ctgtatgtta caaggtagcc tggttgccct gattaccccg
      241 atgaatcaag acggcagcat ccattacgaa caactccgcg atttgatcga ctggcacatt
      301 gaaaacggca cggacggcat cgttgccgtc ggcacgacag gcgaatccgc caccctctcc
      361 gtcgaagaac acaccgccgt catcgaagcc gtcgtcaaac acgttgccaa acgcgtcccc
      421 gtcatcgccg gcacaggggc aaacaacacc gtcgaagcca tcgccctttc ccaagccgcc
      481 gaaaaagccg gtgcagactt cactctctcc gtcgtcccct attacaacaa gccctcccaa
      541 gaaggcattt accaacattt caaaaccatc gccgaagcca cttcgattcc gatgattatc
      601 tacaacgtgc ccggccgtac cgtcgtcagc atgactaacg acactatcct gcgccttgcc
      661 gaaatcccca acatcgtcgg cgtgaaagaa gccagcggca acatcggcag caacatcgaa
      721 ctcatcaacc gcgcgcccga aggcttcgtc gtcctttccg gcgacgacca taccgccctg
      781 ccgttcatgc tgtgcggcgg acacggcgtg attaccgtag ccgccaacgc cgcacccaag
      841 ctctttgccg atatgtgccg cgccgcgctg caaggcgaca ttgccctcgc acgcaagctc
      901 aatgaccggc tgattccgat ttacgacacc atgttctgcg aacccagccc cgccgcaccg
      961 aaatgggcgg tatccgccct gggcagatgc gaaccgcacg tccgcctgcc gctcgttccg
     1021 ctgacggaag gcggacaggc aaaagtccgc gccgccctga aagcctcagg acaactctaa
     1081 atataactat gccgtctgaa ccgttcggac ggcataacgc aacaaacact ttaatatcca
     1141 tcacacagga tgacacgatg acccttatca aacccgtcat tgccgcgctc gcactcatcg
     1201 ggcttgccgc ctgctccggc agcaaaaccg aacagcccaa gctcgactac caaagccggt
     1261 cgcaccgcct gatcaaactt gaagtcccac ccgatttgaa caaccccgac caaggcagcc
     1321 tctaccgcct gcctgccggt tcgggagccg tccgcgccag cgatttggaa aaacgccgca
     1381 cacccgccgt ccaacagcct gccgatgccg aagtattgaa aagcgtcaaa ggtgtccgcc
     1441 tcgagcgcga cggcagccaa cgttggcttg tcgttgacgg caaatcccct gccgaaatct
     1501 ggccgcttct gaaagccttt tggcaggaaa acggcttcga catcaaatcc gaagaacccg
     1561 ccatcggaca aatggaaacc gagtgggcgg aaaaccgtgc caaaatcccc caagacagct
     1621 tgcgccgcct attcgacaca gtcggtttgg gcggcatcta ctccaccggc gagcgcgaca
     1681 aattcatcgt ccgtatcgaa cagggcaaaa acggcgtttc cgacatcttc ttcgcccaca
     1741 aagccatgaa agaagtgtac ggcggcaaag acaaagacac gaccgtatgg cagccctccc
     1801 cgtccgatcc caacctcgaa gccgctttcc tgacgcgctt tatgcaatat ttgggcgttg
     1861 acggacagca ggcggaaaac gcatcggcaa aaaacccgac cctgcccgcc gccaacgaaa
     1921 tggcgcgtat cgaaggcaaa agcctgattg tctttggcga ctacggcaga aactggcggc
     1981 gcaccgcgct cgccctcgac cgcatcgggc tgaccgtcgt cggtcaaaac accgaacgcc
     2041 acgctttcct ggttcaaaaa gccccgaacg aaagcaatgc agttaccgaa caaaaacccg
     2101 gcctgttcaa acgcctgctg ggcaaaggca aagcggagaa acctgccgaa cagccggaac
     2161 tgattgtcta tgccgagcct gtcgccaacg gctcgcgcat cgtcctgctc aacaaagacg
     2221 gcagcgcata tgccggcaaa gacgcatccg cattattggg caaactccat tccgaactgc
     2281 gttaaaccat tcaaaacaaa agcagcttcc aaacagaagc tgctttttta tgcggaactt
     2341 tttacaacaa ccgaggaaaa atatcctcaa ccgcctgaac caacgcatcc gccaaaggcg
     2401 gatcgaacgc acgatgccct gcctgaacca ccctcaattc cgcttccgga aaggctttcg
     2461 acagcgccca cgcactctgc atcggcgtac acaaatcata ccgcccctgc acgataatgg
     2521 tcgggatatg ctgtattttg ccgatattgt tcaaaatcgc cctatcgccc tgcaaccagc
     2581 cgccgttgac aaaataatgg ttttccaaac gcgcgattgc cagcgaggca taagcatctt
     2641 catccacttc ctccggctcg aaacggatca gatagctttc ccaatccgcc caagcctttg
     2701 cggcagacag gcacacttct tcatcttgat gaaacagcaa cccgtgatac gcctcaatca
     2761 gccggttccg ccgattttca gcaatcggcg cgacaaattt ttgccattgt tccggataaa
     2821 tccggctcac accgcccgcc tcgttcagcc acgccgtttc agacggcctg cacaaaaata
     2881 tcccgcgcaa caccaatccc tttacccgtt ccggatgggt ttgggcataa gccagcgaca
     2941 aagtactgcc ccacgaaccg ccgaacacca gccatttccc gatacccagc atttcacgga
     3001 ctttttcaat atccgccacc aaatcccaag tcgtattgtc ttccgcacaa gcatacgggc
     3061 gcgaacgtcc gcaaccgcgc tggtcaataa tgacgatgcg gaacacatcg ggattgaaaa
     3121 aaccccgaca ttcaggcgaa gcccccgccc ccggtccgcc gtgtaaaaaa atgaccggca
     3181 caccgtcggg attgcccgac tcttcccaat aaatttgatg aatttcagac acctgcaagt
     3241 atccgctatg aaaaggctgt tttatctcat acatcatctt ctcccatatt gcctctgaca
     3301 atccgaacat tcccacacgc aacatcacgc acgaaacaca agccgccccg aaaggcaaat
     3361 tccgaaaaat cgc
//
LOCUS       DAXIFD010000179         3342 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.179, whole genome shotgun sequence.
ACCESSION   DAXIFD010000179 DAXIFD010000000
VERSION     DAXIFD010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.179"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            60..689
                     /locus_tag="ACFOCN_001850"
     CDS             60..689
                     /locus_tag="ACFOCN_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HFC6970949.1"
                     /translation="MSETENQALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIK
                     FLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPYE
                     TGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHL
                     NALGLSPEAEAEAIQGAREAFAFYKVVLRETFGLAADAEAPEGMMPHRH"
     gene            864..3241
                     /gene="hmbR"
                     /locus_tag="ACFOCN_001851"
                     /pseudo
     CDS             864..3241
                     /gene="hmbR"
                     /locus_tag="ACFOCN_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222141.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent hemoglobin receptor HmbR"
BASE COUNT          898 a          876 c          827 g          741 t
ORIGIN      
        1 gggcaagtgc ggattttgcc cgccccgcat ccttatccct taccgacaaa ggaaaactta
       61 tgagtgaaac cgaaaatcaa gccctgacgt ttgccaaacg tctgaaggcg gataccacgg
      121 cggttcacga cagcgtggat aacctcgtta tgtctgtcca accgtttgtc agcaaagaaa
      181 actacatcaa atttttgaaa ctccaatccg ttttccacaa ggccgtcgac cacatctata
      241 aagatgccga attaaacaaa gccattcccg agctggaata catggcgcga tacgatgccg
      301 taacgcaaga cttgaaagat ttgggcgaag agccttacaa attcgacaaa gaattgccat
      361 acgaaactgg caacaaagca atcggctggc tttattgcgc cgaaggatcc aatttgggcg
      421 cggcgttttt gttcaaacac gcccaaaaac tcgattacaa cggcgaacac ggcgcgcgcc
      481 acctcgctcc gcatcccgac gggcgcggca aacactggcg cgccttcgtc gagcatctga
      541 acgcattggg cttaagcccc gaagccgaag ccgaagccat ccaaggcgcg cgcgaagcct
      601 ttgcattcta caaagtcgtg ttgcgcgaaa ccttcggctt ggcagccgat gccgaagccc
      661 ccgaaggtat gatgccgcac aggcactaaa aaataatcga accaaataaa caaggtctcg
      721 gcatagctgt ttgcagggac ctttaattac acggcgcggc tttgtttaca tggattactg
      781 tcttattaaa tattaatgat tatcataaaa tctattattc gctaaccgat ggatgaacaa
      841 tccatacatc ttgagttgat aatatgaaac cattacaaat gctccctatc gccgcgctgg
      901 tcggcagtat tttcggcaat ccggtctttg cggcagatga agctgcaact gaaaccacac
      961 ccgttaaggc agaggtaaaa gcagtgcgcg ttaaaggcca gcgcaatgcg cctgcggctg
     1021 tggaacgcgt caaccttaac cgtatcaaac aagaaatgat acgcgacaac aaagacttgg
     1081 tgcgctattc caccgatgtc ggcttgagcg acagcggccg ccatcaaaaa ggctttgctg
     1141 ttcgcggcgt ggaaggcaac cgtgtcggcg tgagcataga cggcgtaaac ctgcctgatt
     1201 ccgaagaaaa ctcgctgtac gcccgttatg gcaacttcaa cagctcgcgt ctgtctatcg
     1261 accccgaact cgtgcgcaac atcgacatcg taaaaggggc ggactctttc aataccggca
     1321 gcggcgcctt gggcggcggt gtgaattacc aaaccctgca aggacgtgac ttactgttgc
     1381 ctgaacggca gttcggcgtg atgatgaaaa acggttacag cacgcgtaac cgtgaatgga
     1441 caaataccct cggtttcggc gtgagcaacg accgcgtgga tgccgctttg ctgtattcgc
     1501 aacggcgcgg ccatgaaact gaaagcgcag gcaagcgtgg ttatccggta gagggtgctg
     1561 gtagcggagc gaatatccgt ggttctgcgc gcggtattcc tgatccgtcc caacacaaat
     1621 accacagctt cttgggtaag attgcttatc aaatcaacga caaccaccgc atcggcgcat
     1681 cgctcaacgg tcagcagggg cataattaca cggttgaaga gtcttacaac ctgcttgctt
     1741 cttattggcg tgaagctgac gatgtcaaca gacggcgtaa caccaacctc ttttacgaat
     1801 ggacgccgga atccgaccgg ttgtctatgg taaaagcgga tgtcgattat caaaaaacca
     1861 aagtatctgc ggtcaactac aaaggttcgt tcccgataga ggattcttcc accttgacac
     1921 gtaactacaa tcaaaaggac ttggatgaaa tctacaaccg cagtatggat acccgcttca
     1981 aacgcattac cctgcgtttg gacagccatc cgttgcaact cggggggggc gacaccgcct
     2041 gtcgtttaaa actttcgcca gccgccgtga ttttgaaaac ctaaaccgcg acgattatta
     2101 cttcagcggc cgtgttgttc gaaccaccag cagtatccag catccggtga aaaccaccaa
     2161 ctacggtttc tcactgtctg accaaattca atggaacgac gtgttcagta gccgcgcagg
     2221 tatccgttac gatcatacca aaatgacgcc tcaggaattg aatgccgagt gtcatgcttg
     2281 tgacaaaaca ccgcctgcag ccaacactta taaaggctgg agcggttttg tcggcttggc
     2341 ggcgcaactg aatcaggctt ggcgtgtcgg ttacgacatt acttccggct accgtgtccc
     2401 caatgcgtcc gaagtgtatt tcacttacaa ccacggttcg ggtaattggc tgcccaatcc
     2461 caacctgaaa gccgagcgca gcaccaccca caccctctct ctgcaaggcc gcagcgaaaa
     2521 aggtactttg gatgccaacc tgtatcaaag caattaccgc aatttcctgt ctgaagagca
     2581 gaagctgacc accagcggcg atgtcagctg tactcagatg aattactact acggtatgtg
     2641 tagcaatcct tattccgaaa aactggaatg gcagatgcaa aatatcgaca aggccagaat
     2701 ccgcggtatc gagctgacgg gccgtctgaa tgtggacaaa gtagcgtctt ttgttcctga
     2761 gggctggaaa ctgttcggct cgctgggtta tgcgaaaagc aaactgtcgg gcgacaacag
     2821 cctgctgtcc acccagccgt tgaaagtgat tgccggtatc gactatgaaa gtccgagcga
     2881 aaaatggggc gtgttctccc gcctgaccta tctgggcgcg aaaaaggtca aagacgcgca
     2941 atacaccgtt tatgaaaaca agggctgggg tacgcctttg cagaaaaagg taaaagatta
     3001 cccgtggctg aacaagtcgg cttatgtgtt cgatatgtac ggcttctaca aaccggtgaa
     3061 aaacctgact ttgcgtgcag gcgtatataa tgtgttcaac cgcaaataca ccacttggga
     3121 ttccctgcgc ggcctgtata gctacagcac caccaactcg gtcgaccgcg atggcaaagg
     3181 cttagaccgc taccgcgccc caagccgtaa ttacgccgta tcgctggaat ggaagtttta
     3241 atctggtatt attgaattaa tcgccttgtt gaaaattaaa gccgtccgaa ttgtgttcaa
     3301 gaactcattc ggacggtttt ttaccgtaaa tctgtgtgat gg
//
LOCUS       DAXIFD010000180         3303 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.180, whole genome shotgun sequence.
ACCESSION   DAXIFD010000180 DAXIFD010000000
VERSION     DAXIFD010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.180"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..750
                     /locus_tag="ACFOCN_001852"
                     /pseudo
     CDS             1..750
                     /locus_tag="ACFOCN_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284601.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
     gene            747..1307
                     /locus_tag="ACFOCN_001853"
     CDS             747..1307
                     /locus_tag="ACFOCN_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmfQ family protein"
                     /protein_id="HFC6970950.1"
                     /translation="MSYQDILRGLLPPVSYARNAPRVRAQAEIDGAALDAVAESAQSV
                     ADAVDPRSAGQMLADWERVLGLDGTGKNRQRRVLAVMAKLNETGGLSIPYFVRLAEAA
                     GYQIQIDEPQPFRAGVNRAGDRLAPQEIMWVWHVNVRGGNNRITRFRAGISAAGDRLT
                     DYSDAVIESLFNRLKPAHTAIRFTYR"
     gene            1318..3291
                     /locus_tag="ACFOCN_001854"
     CDS             1318..3291
                     /locus_tag="ACFOCN_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyocin knob domain-containing protein"
                     /protein_id="HFC6970951.1"
                     /translation="MHPIETPDKTFHDGDGVSELGTILPAWWLNQVQSELLAVLTAAG
                     IQPDKSQPNQLLAALNRLAVVTTGNQEIGGQKTFTAQTQFQSGIHLSANQTNWNGGHK
                     AYIGADADNAHIVFGDDTLRLHGANNRISYNNHDIFHKANKPRFAEDIEGKPNTLSGY
                     GIGNFKVETFRGDLNTLKTDGIYSLSTAVGSSNLPVENTACHIQVIAGTKHGWCRQLG
                     YPAYTSDVYERHQTSSANDNWSAWKKLNSDGIPVGAIVSFPKAVRNPAGYLKANGTTF
                     AQNTFPDLYRALGNSNRLPDLSRTDIGMTAWFPSDQIPTGWLAFDDIRTRVTETAYPE
                     LYRLLTGKYGSIQNVPQAEDRFIRNAGNSLAVGTKQEDEIKRHVHKVFSHWTNHTDTA
                     AVGYEDHNERQRSALVSTWTDGDLNDNGFLTPRPDSKMATGGDENRPKALVLKLCIKA
                     ADTLGEAVFWIKSHGETINAGALDAGTLAQNLQDKADRAHTHTAAQIQGLDEKISTAV
                     AAQFTRQTIGGVDIVRFPDGTMIQTGSYRFTRSGGPIENEVVFPVAFADGNVKCFVSE
                     RHSGRVTGDRRQHNWLFIRAKNHAAAIITNWYEGSCDWMAIGKAASGNAASSPIGPEI
                     PETNEEPQRESGRTSTGPRNRRRRDGLLEALQD"
BASE COUNT          808 a         1070 c          897 g          528 t
ORIGIN      
        1 cctgcaagtg cgtatcggcc agcgttttta ccgcactacc gcccgcgccg ttatcggcag
       61 cggcggcacg gcggaaatac cggcaatcgc cgacgagccg ggcgcggccg ccaatgtggc
      121 gacggcgagg cgcaactgat ggccgccccc gtcggtgtgg ccaccgaatg ccgccttacc
      181 gtacaaggcg gcaccgaccg agaaagcgat gcctcactgc tggcgcgtct gttgaaaatc
      241 atccgccgac cgcccgcagg cggcaaccgt tacgactata aaaactgggc gttgagtgtt
      301 gacggcgtaa ccagcgcata tgtttatccg ctgcgccgcg gcttgggtac ggtggatatt
      361 gccattacct ccgccgacgg tgtgccatcg gaagaaactg tgcgccgcgt acaggcttat
      421 atcgacgaga tgcgcccggt aacggcaaaa aatgcgctgg tactcaagcc aaccgtaacg
      481 gcggtgcctg ttaccgtgca agtcaagctc gacggcatcg acttggacga ggccaagcgc
      541 cgcatacgga cggccctaaa agaatatttc gacaccctga tccccggcga cggcctgact
      601 gtgtcgcaaa tcgaggcggc tatcagcaat gtggatggtg tgatcgaccg ccgtctgact
      661 gcgccgacgg ccaaccgtgc cgccgatacg gttaaccgca tcgagtggtt taaagcgggc
      721 gcgattaatg taacggagat gccgtcatga gctatcaaga catcttgcgg ggtctgttgc
      781 cccccgtgtc gtatgcccgc aatgccccgc gtgtgcgggc gcaggcagaa atagacggcg
      841 cagcgctgga tgcggtagcg gaatcggctc aaagcgttgc cgatgccgtc gacccgcgca
      901 gcgccggcca aatgctggcc gattgggagc gcgtattagg tttggacggt acgggcaaaa
      961 accgccagcg ccgtgtgttg gccgtcatgg ccaagctaaa cgaaacaggc ggcttgagta
     1021 ttccttattt tgtgcgtttg gccgaggcgg cgggctatca aatccaaatc gacgaaccgc
     1081 agccgttccg cgccggtgtc aaccgtgcgg gcgaccgtct tgcgccgcag gaaatcatgt
     1141 gggtgtggca cgttaacgtg cgcggcggca acaaccgcat tacccgattc cgcgccggta
     1201 tctcggcggc gggcgacagg ctgaccgatt acagcgatgc cgtgatcgaa agcctgttca
     1261 accgcctcaa gcccgcccac accgctatcc gatttaccta ccgataagga ctaaaccatg
     1321 caccccatcg aaacccccga taagaccttc cacgacggcg acggcgtgtc cgaattgggc
     1381 accatcctgc ccgcgtggtg gctcaaccaa gtgcaatccg agctgctggc cgtgctgact
     1441 gcggccggta tccagccgga taagtcgcag cctaatcaat tactggcagc actgaataga
     1501 ctggctgtag ttaccaccgg caaccaagaa atcggcggcc aaaaaacctt taccgcccaa
     1561 acccaattcc aaagcggcat ccatttatcc gccaaccaga cgaactggaa cggcggccac
     1621 aaagcctaca tcggcgcgga tgccgacaac gcccacatcg tcttcggcga cgacaccctg
     1681 cgcctgcacg gcgcaaacaa ccgcatttcc tacaacaacc acgacatctt ccacaaagcc
     1741 aacaaaccgc gttttgccga agacatcgaa ggcaaaccga acacactgtc cggatacggc
     1801 atcggcaatt tcaaagtcga aaccttccgg ggcgatttga acaccctcaa aacagacggc
     1861 atctattccc tgtcgacggc ggtcggcagc tccaacctgc ccgttgaaaa caccgcctgc
     1921 catatccaag tcatcgccgg cacgaaacac ggctggtgca ggcagttggg ttatcccgcc
     1981 tacacgtccg acgtgtacga acgccaccaa acgagcagcg caaacgacaa ctggtccgca
     2041 tggaaaaaac tcaattcgga cggcatcccc gtcggcgcga tcgtatcctt tcccaaagcc
     2101 gtccgaaacc ccgcaggcta tctcaaagcc aacggcacga cctttgcaca aaacaccttc
     2161 cccgacctct accgcgcctt gggcaacagc aaccgcctgc ccgatttaag ccgtaccgac
     2221 atcggcatga ccgcgtggtt tccgtccgac caaatcccga ccggctggct ggcgtttgac
     2281 gacatccgca cgcgcgtaac cgaaaccgct tatcccgagc tgtaccgtct gctgaccgga
     2341 aaatacggca gcatccaaaa cgtcccgcag gcggaagacc gctttatccg caacgcaggc
     2401 aacagcttgg cagtcggaac gaagcaggaa gacgaaatca aacggcacgt ccacaaagta
     2461 ttttcacact ggacaaacca cacagacacg gcagccgtcg gttacgaaga ccacaacgaa
     2521 aggcagagaa gcgcgctcgt atcgacttgg acggacggcg atttaaacga caacggcttt
     2581 ttaaccccgc gcccggacag caaaatggcg acaggcggcg acgaaaaccg ccccaaagcc
     2641 ctggttttaa aactgtgcat caaagccgcc gacaccttgg gcgaagccgt gttttggata
     2701 aagtcccacg gcgaaaccat caacgccggc gcgctggacg cgggcacgct ggcgcaaaac
     2761 ctccaagaca aagcagaccg cgcccacacc cacaccgccg cccaaatcca agggctggac
     2821 gaaaaaatca gcaccgccgt tgccgcgcaa ttcacacgcc aaaccatcgg cggcgtggat
     2881 attgtcagat tccccgacgg cacaatgata cagaccggca gctacaggtt cacacgaagc
     2941 ggcggcccca tcgaaaacga agtcgtcttc cccgtcgcct ttgccgacgg caacgtcaaa
     3001 tgcttcgtat ccgaacgcca ttcgggacgc gttaccggcg atcgaaggca acacaactgg
     3061 ctgtttatcc gcgcaaaaaa ccacgccgcc gccattatta ccaactggta cgaaggcagt
     3121 tgcgactgga tggccatcgg caaagccgcc tcgggaaacg ccgccagctc cccgataggc
     3181 cccgaaatac ctgaaaccaa cgaagaaccg caaagagaga gtggaagaac atcaaccgga
     3241 ccccgaaacc gccgccgccg agacggcttg ctcgaggcac tgcaagacta gcgggctgta
     3301 gag
//
LOCUS       DAXIFD010000181         3262 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.181, whole genome shotgun sequence.
ACCESSION   DAXIFD010000181 DAXIFD010000000
VERSION     DAXIFD010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.181"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..534
                     /locus_tag="ACFOCN_001855"
     CDS             <1..534
                     /locus_tag="ACFOCN_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224706.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
                     /protein_id="HFC6970952.1"
                     /translation="ATALQDSAFAVKDGINSAKQWADAHPNITATAQTALSVAEAAGT
                     VWGGKKVELNPTKWDWVKNTDYKTPAARPMQTLDGEMAGGNKPVVKSIRPTTRDELRQ
                     ALQEQGFRRTGSDAAQYETWKGPDGVKIDIRPNGEVIRTQRVPRTDGVQGKYPQRQDY
                     EGNPLPNNHHHSGYFVK"
     gene            531..848
                     /locus_tag="ACFOCN_001856"
     CDS             531..848
                     /locus_tag="ACFOCN_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970953.1"
                     /translation="MKKNIFHNVSLYEIIFSDNGNTLTLSFTDTIEGNYFGYIKCSNI
                     LNFKLDTNNFVDYEDKEDSLFPLFIPEIELYKYQFYSEIIIDVGIIIKISAETINFEP
                     LGK"
     gene            918..1271
                     /gene="mafB"
                     /locus_tag="ACFOCN_001857"
                     /pseudo
     CDS             918..1271
                     /gene="mafB"
                     /locus_tag="ACFOCN_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503511.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
     gene            1257..1586
                     /locus_tag="ACFOCN_001858"
     CDS             1257..1586
                     /locus_tag="ACFOCN_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mAFB alternative"
                     /protein_id="HFC6970954.1"
                     /translation="MTSNSKADASTQPSLQAQLIGEQISSGHAYNKHVIRQQEFTDLN
                     INSPADFARHIENIVSHPTNMKELPRGRTAYWDDKTGTIVIRDKNSDDGGTAFRPTSG
                     KKYYDDL"
     gene            1596..1802
                     /locus_tag="ACFOCN_001859"
     CDS             1596..1802
                     /locus_tag="ACFOCN_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970955.1"
                     /translation="MNILSINNQNSTISLTQDEVFVLRAILNEIYAGVCVDSREFENV
                     SGVRKHEVDNLQQQFAGIYKKMTT"
     gene            1830..2185
                     /locus_tag="ACFOCN_001860"
                     /pseudo
     CDS             1830..2185
                     /locus_tag="ACFOCN_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504007.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2182..2553
                     /locus_tag="ACFOCN_001861"
     CDS             2182..2553
                     /locus_tag="ACFOCN_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6970956.1"
                     /translation="MIKQNSFVPYPEAMLPKGFKYPQSYLKLAQSTHAINYDEQYSFP
                     WWFENAESNISEVIDIYFEITGIPNLLPFARNQEWAACFDISDKSGNPKIIVVNLDNT
                     KYYETFENFDTWLKEAENDGW"
     gene            2639..2764
                     /locus_tag="ACFOCN_001862"
                     /pseudo
     CDS             2639..2764
                     /locus_tag="ACFOCN_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
     gene            2804..>3262
                     /gene="mafB"
                     /locus_tag="ACFOCN_001863"
     CDS             2804..>3262
                     /gene="mafB"
                     /locus_tag="ACFOCN_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6970957.1"
                     /translation="MNLPIQKFMMLFAAAISLLQIPISHANGLDARLRDDMQAKHYEP
                     GGKYHLFGNARGSVKKRVYAVQTFDATAVSPVLPITHERTGFEGVIGYETHFSGHGHE
                     VHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYP"
BASE COUNT         1112 a          597 c          692 g          861 t
ORIGIN      
        1 gcaaccgcat tacaagacag tgcttttgcg gtaaaagacg gtatcaactc tgccaaacaa
       61 tgggctgatg cccatccgaa tataacagca acagcccaaa ctgccctttc cgtagcagag
      121 gccgcaggta cggtttgggg cggtaaaaaa gtagaactta acccgactaa atgggattgg
      181 gttaaaaata ccgattataa aacacctgct gcccgaccta tgcagacttt agatggggaa
      241 atggctggtg gaaacaagcc agttgttaaa tctatcagac caactacgcg agatgaatta
      301 cgtcaagcat tgcaagaaca aggttttaga cgtactggtt cagatgcggc tcaatatgaa
      361 acatggaaag gtcctgatgg cgtgaaaata gatattcgtc caaatggaga ggttataaga
      421 acccaaagag tgccgcgaac cgatggtgta cagggaaaat atccgcaacg acaagattat
      481 gaaggcaatc cattgccaaa taatcatcat cattctggat attttgtcaa atgaaaaaaa
      541 atatttttca caatgtaagc ctttatgaaa taatcttttc cgataatgga aataccctta
      601 cattatcttt tacagataca attgaaggta attatttcgg atatatcaaa tgcagtaata
      661 ttttgaattt taaattagat acaaataatt tcgtagatta tgaggataag gaagatagct
      721 tgtttccctt gtttataccc gaaatagagc tatataaata ccaattttat agtgaaatta
      781 ttattgatgt agggattatt ataaaaatat ctgctgaaac aattaatttt gagccactgg
      841 gaaaatagta actgctttct cagcagccgt agcaactgta tttttacccg acggggtaaa
      901 aatacagttg ctacatctct gcgcagcaga ctctacaagg tattaataat ttaggaaatt
      961 taagtccaga aacacaactt gctgccgcga gcctattaca ggatagtgct tttgcggtaa
     1021 aagacggcat taattccgcc agacaatggg ctgatgccca tccgaatata actgcaacag
     1081 cccaaactgc ccttgccgta gcagaggccg caactacggt ttggggcggt aaaaaagtag
     1141 aacttaaccc gaccaaatgg gattgggtta aaaataccgg ctataaaaaa cctgctgccc
     1201 gccatatgca gactgtagat ggggagatgg caggggggaa tagaccgcct aaatctataa
     1261 cgtccaacag caaagcagat gcttccacac aaccgtcttt acaagcgcaa ctaattggag
     1321 aacaaattag tagtgggcat gcttataaca agcatgtcat aagacaacaa gaatttacgg
     1381 atttaaatat caattcacca gcagattttg ctcggcatat tgaaaatatt gttagccatc
     1441 caacaaatat gaaagagtta cctcgcggta gaactgcgta ttgggatgat aaaacaggga
     1501 caatagttat ccgagataaa aattctgacg atggaggtac agcatttaga ccaacatcag
     1561 gtaaaaaata ttatgatgat ttataggaaa aagccatgaa tatactatcc ataaataatc
     1621 aaaactcaac tatttcacta actcaagatg aagtttttgt tttacgagct atcttgaatg
     1681 agatatatgc gggcgtatgt gtagattcaa gagaatttga aaatgtatct ggtgttagaa
     1741 aacatgaagt agataattta caacaacagt ttgctggaat ttataaaaaa atgacaactt
     1801 aacaacccaa atttttgtca gagcctagtg caaattacaa ctatgattct attgtagccg
     1861 aaatgaaaga aaaaaatcat gggttggcga cagggttgat gttgttaata tgcctgatgg
     1921 agcacctact agtatggata acacgcgtat tatggcagca cgtgaagcag gggtaaaagt
     1981 ggaagcgaat gttcataatt ttaatgaccg attatcatca aaagagagaa tcaggtttaa
     2041 gcatgatggt attgagcctc aaacttgggg agaagctatc cagctacgaa ttagaaagca
     2101 agaaacacaa aaaggagttc cagaagggtg gagcaaaaga tttcctaacg gaagtattta
     2161 tgatgtaaag gtacttagga aatgataaaa caaaatagtt ttgttccgta tcctgaagca
     2221 atgcttccta aaggatttaa atatccgcaa agttatttaa aattagctca atccactcat
     2281 gccattaact acgatgaaca atattctttt ccttggtggt ttgaaaatgc agaaagcaat
     2341 atatcagaag taattgacat ttattttgaa ataactggca ttccaaacct attacctttt
     2401 gctagaaacc aagagtgggc tgcctgtttt gatatttcag ataaatcagg taatcctaaa
     2461 attatagtag ttaatttaga taatacaaaa tattacgaga cttttgaaaa ttttgatact
     2521 tggctaaaag aagctgaaaa tgatggttgg tagcagccgt aggtcggatt ctcgaatccg
     2581 acattttcca acagcggcat ttcggaaacg atagacgcgt caaatatttt tgtcggatac
     2641 aagtatccga ccatacggca atcatacggg taactctgcc ccatccgtag aggctgataa
     2701 cagtcatgag gggtatggat acagcgatga agtagtgcga caacatagac aaggacaacc
     2761 ttgattcaca ctaccataac cgcttgctac caaggaaaac aaaatgaatt tgcctattca
     2821 aaaattcatg atgctgtttg cagcagcaat atcgttgctg caaatcccca ttagtcatgc
     2881 gaacggtttg gatgcccgtt tgcgcgatga tatgcaggca aaacactacg aaccgggtgg
     2941 taaataccat ctgtttggta atgctcgcgg cagtgttaaa aagcgggttt acgccgtcca
     3001 gacatttgat gcaactgcgg tcagtcctgt actgcctatt acacacgaac ggacagggtt
     3061 tgaaggtgtt atcggttatg aaacccattt ttcagggcac ggacatgaag tacacagtcc
     3121 gttcgatcat catgattcaa aaagcacttc tgatttcagc ggcggtgtag acggcggttt
     3181 tactgtttac caacttcatc gaacagggtc ggaaattcat ccggaggatg gatatgacgg
     3241 accgcaaggc agcgattatc cg
//
LOCUS       DAXIFD010000182         3246 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.182, whole genome shotgun sequence.
ACCESSION   DAXIFD010000182 DAXIFD010000000
VERSION     DAXIFD010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.182"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            148..1158
                     /gene="dusB"
                     /locus_tag="ACFOCN_001864"
     CDS             148..1158
                     /gene="dusB"
                     /locus_tag="ACFOCN_001864"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HFC6970958.1"
                     /translation="MHIGGYFIDNPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTS
                     DPTLRNTKKTLHRSDFADEGGIVAVQIAGSDPQQMADAARYNVSLGAQVIDINMGCPA
                     KKVCNAQAGSALMQNEPLVAAILEAVVRAVDVPVTLKTRLGWHDDHKNLPAVARIAED
                     CGIAALAVHGRTRTQMYKGEAAYDLIAETKCRLNIPVWVNGDITSPQKAAAVFKQTAA
                     DGIMIGRGAQGRPWFFRDLKHYAEHGVLPPALSLAECSAAILNHVRAMHAFYGETAGV
                     RIARKHIGWYIGEMPDGEQARREINRLDSAAAQYDMLAGYLERLAGKTDRWACGYRTN
                     AF"
     gene            1188..1427
                     /locus_tag="ACFOCN_001865"
     CDS             1188..1427
                     /locus_tag="ACFOCN_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HFC6970959.1"
                     /translation="MPHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLL
                     VCVMEQCGGNQSKASVMLGLNRNTLRKKLIQHGLL"
     gene            1430..1966
                     /gene="ruvC"
                     /locus_tag="ACFOCN_001866"
     CDS             1430..1966
                     /gene="ruvC"
                     /locus_tag="ACFOCN_001866"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HFC6970960.1"
                     /translation="MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPPDAP
                     LADRIAVIVRHIGEVVAVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLP
                     VSEYTALQVKQAVVGKGKAAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHG
                     LAAKLNPSGMQVKRGRFQ"
     gene            2017..2886
                     /locus_tag="ACFOCN_001867"
     CDS             2017..2886
                     /locus_tag="ACFOCN_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HFC6970961.1"
                     /translation="MKFIFFVLYVLQFLPFALLHKLADLTGLLAYLLVKPRRRIGEIN
                     LAKCFPEWDGKKRETVLKQHFKHMAKLMLEYGLYWYAPAGRLKSLVRYRNKHYLDDAL
                     AAGEKVIILYPHFTAFEMAVYALNQDVSLISMYSHQKNKILDAQILKGRNRYDNVFLI
                     GRTEGLRALVKQFRKSSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANA
                     KVIPAIPVREADNTVTLHFYPAWESFPSEDAQADAQRMNRFIEERVREHPEQYFWLHK
                     RFKTRPEGSPDFY"
BASE COUNT          791 a          848 c          866 g          741 t
ORIGIN      
        1 ctgcccgcct gtgagtggcg gggcagggaa tctgtgtgcg gattatgcca taaaacggtg
       61 tccgccccaa tcgcgggcgc gtccggagat tggaaatcct gcttaaaaaa tgtacaatgg
      121 cgcacttttt tgaaacgcgg atccattatg cacatcggcg gctattttat cgacaacccc
      181 atcgcacttg caccgatggc gggcattacc gacaaaccct tccgccgcct ctgccgcgat
      241 ttcggcgcgg gttgggcggt gtgcgaaatg ctgaccagcg acccgacact tagaaatacc
      301 aaaaagaccc tgcaccgcag cgattttgcc gatgaaggcg gcatcgttgc cgtgcagatt
      361 gccggcagcg atccgcagca gatggcggat gccgcgcgtt acaacgtcag ccttggggcg
      421 caggttatcg acatcaacat gggctgtccc gccaagaaag tgtgcaatgc ccaagccggc
      481 agcgcgctga tgcagaacga gccgctggtt gccgccattc tcgaagccgt cgtccgtgcg
      541 gtggacgtac ccgttaccct caaaacccgt ttgggctggc acgacgacca caaaaacctg
      601 cctgccgtcg cccgcatcgc cgaagattgc ggcattgccg cccttgccgt ccacggacgc
      661 actcgcacgc aaatgtacaa aggtgaagcg gcttacgacc tgattgccga aaccaaatgc
      721 cgtctgaaca tcccggtctg ggtcaacggc gacatcactt cgccgcaaaa agccgccgcc
      781 gtcttcaaac aaaccgccgc cgacggcatc atgatagggc gcggcgcgca aggcagaccg
      841 tggttcttcc gcgatttgaa acattacgcc gaacacggtg ttttaccgcc tgccttgagt
      901 ttggcagaat gcagtgccgc cattttgaac cacgtccgcg ccatgcacgc gttttatggt
      961 gagaccgccg gtgtgcgcat tgcacgcaaa cacataggct ggtacatcgg cgaaatgccc
     1021 gacggcgaac aggcgcggcg tgaaatcaac cgcttggaca gtgcggcggc gcaatacgac
     1081 atgcttgcag gttatcttga aagacttgcc ggaaaaaccg accgttgggc gtgcggctac
     1141 cgcacaaatg ccttctgaac acttgattat cctttgaaag tgcaatcatg ccccataccc
     1201 ttcccgatat ttcccaatgt atcagacaaa atttggaaca atatttcaaa gacctgaacg
     1261 gtaccgaacc ttgcggcgtg tacgatatgg tattgcatca ggtggaaaag ccgctgctgg
     1321 tgtgcgtgat ggagcaatgc ggcggcaacc agtccaaagc ctccgtcatg ttgggactga
     1381 accgcaatac tttgcgtaaa aaactgattc aacacggttt gctgtgaata tgtcggcaac
     1441 cgtccgtatc ttaggtatcg acccgggcag ccgcgtaacg ggtttcggca tcatcgatgt
     1501 cagggggcgc gatcattttt acgtcgcctc cggctgcatc aaaacgcctc ccgatgcgcc
     1561 tctggcagac aggattgccg tgattgtgcg gcacatcggc gaagtcgttg ccgtttacaa
     1621 gccgcagcag gcggcggtgg aacaggtgtt cgtcaacgtc aatccggcat cgacgctgat
     1681 gctgggtcag gctaggggcg cggcattggc ggcattggtc agccataagc tgcccgtttc
     1741 ggaatacacg gccttgcagg tcaaacaggc ggtagtcggc aaaggcaagg cggcgaaaga
     1801 acaggtgcag catatggtgg tgcagatgct ggggctttcg ggaacgccgc aggcggatgc
     1861 ggcggacggt cttgccgtcg cgctgaccca cgccttacgc aaccacgggc ttgccgccaa
     1921 actcaatcct tcggggatgc aggtcaagcg cggcaggttt caatagtttc agacggcatt
     1981 tgtattttgc cgtctgaaaa gaaaatgtgt atcgagatga aatttatatt ttttgtactg
     2041 tatgttttgc agtttctgcc gtttgcgctg ctgcacaaac ttgccgacct gacgggtttg
     2101 ctcgcctacc ttttggtcaa accccgccgc cgtatcggcg aaatcaattt ggcaaaatgc
     2161 tttcccgagt gggacggaaa aaagcgcgaa accgtattga agcagcattt caaacatatg
     2221 gcgaaactga tgcttgaata cggcttatat tggtacgcgc ctgccgggcg tttgaaatcg
     2281 ctggtgcgtt accgcaataa gcattatttg gacgacgcgc tggcggcggg ggaaaaagtc
     2341 atcattctgt acccgcactt caccgcgttc gagatggcgg tgtacgcgct taatcaggat
     2401 gtatcgctga tcagtatgta ttcccaccaa aaaaacaaga tattggacgc acagattttg
     2461 aaaggccgca accgctacga caatgtcttc cttatcgggc gcaccgaagg gctgcgcgcc
     2521 ctcgtcaaac agttccgcaa aagcagcgcg ccgtttctgt atctgcccga tcaggatttc
     2581 ggacgcaacg attcggtttt tgtggatttt ttcggtattc agacggcaac gattaccggc
     2641 ttgagccgca ttgccgcgct tgcaaatgca aaagtgatac ccgccatccc cgtccgcgag
     2701 gcggacaata cggttacatt gcatttctac ccggcttggg aatcctttcc gagtgaagat
     2761 gcgcaggccg acgcgcagcg catgaaccgt tttatcgagg aacgcgtgcg cgaacatccc
     2821 gagcagtatt tttggctgca caagcgtttc aaaacccgtc cggaaggcag ccccgatttt
     2881 tactgactac gtaaaattac aaaacatatc aggcgtttca agtcgaaatt cctgattgtt
     2941 tttggaaatt tgaaatccgg gtcgtgcaaa caggatttgc cggacggttt taacggttca
     3001 gttgtttgta aaaacaatgc tttttaagat tgacaaaaaa ccagaatcag gttttagggc
     3061 ttattccgcg aacaaagggg gcggatgccg aaaatccgat taatatatta aaattaaatt
     3121 tgtttaaaaa cataaagttg taaacaagta tctcatataa gcctttttca ttaaacagat
     3181 agtcagatat tttgtgctaa aaatttatat aatatttaaa ttaatatcaa gttataaaaa
     3241 tatata
//
LOCUS       DAXIFD010000183         3110 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.183, whole genome shotgun sequence.
ACCESSION   DAXIFD010000183 DAXIFD010000000
VERSION     DAXIFD010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3110
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.183"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..211)
                     /locus_tag="ACFOCN_001868"
     CDS             complement(<1..211)
                     /locus_tag="ACFOCN_001868"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970962.1"
                     /translation="MLPTRKTARKIQARHIALPFSGKPQFYRPQERLSKQAQATPPGH
                     FRFHRLSVVRIMQQHHQRITLFGRQQ"
     gene            271..894
                     /locus_tag="ACFOCN_001869"
     CDS             271..894
                     /locus_tag="ACFOCN_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HFC6970963.1"
                     /translation="MKKPTDTLPVNLQRRRLLCAAGALLLSPLAHAGAQREETLADDV
                     ASVMRSSVGSVNPPRLVFDNPKEGERWLSAMSARLARFVPEEEERRRLLVNIQYESSR
                     AGLDTQIVLGLIEVESAFRQYAISGVGARGLMQVMPFWKNYIGKPAHNLFDIRTNLRY
                     GCTILRHYRNLEKGNIVRALARFNGSLGSNKYPNAVLGAWRNRWQWR"
     gene            1005..2387
                     /locus_tag="ACFOCN_001870"
     CDS             1005..2387
                     /locus_tag="ACFOCN_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6970964.1"
                     /translation="MARDNRIQMFPHEWRTSTTLSGVYALRMLGMFLVLPVLAVYAAS
                     LPGAEGNKTLVGLAMGIYGLTQALLQLPLGIASDKFGRKKTIYVGLIVFAAGSFLAAA
                     ADTLPMLIAARAIQGAGAVSAAVTALLADLTRDGVRTRAMAMIGLSIGLTFSVSLVVA
                     PVIADAVGVRGLFLLTGILTVASIGVVAWMTPDPEVSKLHEDTQAQPSRIGEVLKNRR
                     LLTLDFGIFALHAAQMALFTALPFAMTQLGLEKIQHWKVYLPSTITGLVVMVPLIIVG
                     ETRNKLKQVFVLGIVCIAAAQLGLLSGMRSVGLITAYLVVYFIGFNVLEASLPSMVSK
                     IAPSDLKGTAMGVYNTMQSLGLFAGGAAGGLLFQKYGFSGVFAFCSILMLLWLVIAVL
                     SPAPKPVKNLSYPVGGVWQGNQEGLYRALSELEGVEDIGFSFDGQTVYLKVLQKGFDQ
                     AAAEKIITGV"
     gene            2391..2915
                     /locus_tag="ACFOCN_001871"
     CDS             2391..2915
                     /locus_tag="ACFOCN_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFC6970965.1"
                     /translation="MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQ
                     RVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANE
                     MKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
                     AAAPVEDIDDDIPF"
BASE COUNT          625 a          840 c          938 g          707 t
ORIGIN      
        1 cctgctgccg cccgaaaagc gtgatgcgct gatggtgctg ctgcataatc cggacgacgg
       61 ataaccggtg aaaacggaaa tgcccgggcg gtgttgcctg tgcctgtttg gacaagcgtt
      121 cttgagggcg gtagaattga ggtttgcccg aaaagggcag ggcgatatgc cgcgcttgga
      181 ttttgcgcgc ggtttttcgc gttggaagca atcattgtct gtttgaatat ttaatgccgt
      241 ctgaaacgtc cggacgcgcc cccgttccct atgaaaaaac cgaccgatac cctacccgtt
      301 aatctgcaac gccgccgcct gttgtgtgcc gccggtgcgt tgttgctcag tcctctggcg
      361 cacgccggtg cgcaacgtga ggaaacgctt gccgacgatg tggcttccgt gatgaggagt
      421 tctgtcggca gcgtcaatcc gccgaggctg gtgtttgaca atccgaaaga gggcgaacgt
      481 tggttgtctg ccatgtcggc acgtttggca aggttcgtcc ccgaggagga ggagcggcgc
      541 aggctgctgg tcaatatcca gtacgaaagc agccgggccg gtttggatac gcagattgtg
      601 ttggggctga ttgaggtgga aagcgcgttc cgccagtatg caatcagcgg tgtcggcgcg
      661 cgcggcctga tgcaggttat gccgttttgg aaaaactaca tcggcaaacc ggcgcacaac
      721 ctgttcgaca tccgcaccaa cctgcgttac ggctgtacca tcctgcgcca ttaccggaat
      781 cttgaaaaag gcaacatcgt ccgcgcgctt gcccgcttta acggcagctt gggcagcaat
      841 aaatatccga acgccgtttt gggcgcgtgg cgcaaccgct ggcagtggcg ttgattttga
      901 acccgcgccg caaccgaaat acggcgaatc ctgtataatc cgaaaatctg ttcactggaa
      961 gttcagacgg cattgcaact gttgatgccg tctgaaaaaa tatgatggca agagacaacc
     1021 gcatccaaat gtttccgcac gaatggcgca ccagtacgac gctttccggc gtgtacgcgc
     1081 tgcgtatgct gggtatgttc ctcgtgctgc ccgtattggc ggtgtatgcc gcctcgctgc
     1141 ccggcgcgga aggcaacaaa acgctggtcg ggctggcaat gggcatttac gggctgacac
     1201 aggctctgct gcaactgcct ttgggcatcg cttccgacaa gttcgggcgc aagaaaacca
     1261 tttatgtcgg gctgattgtg tttgcagcgg gcagcttcct tgccgccgcc gccgatacgc
     1321 tgcccatgct gatcgccgca cgcgccatac agggtgcggg agcggttagt gcggcggtta
     1381 ccgcgctgct ggcggatttg acgcgcgacg gcgtacgtac ccgcgcaatg gcgatgatcg
     1441 gtttgagtat cggtctgacg ttttcggtca gcctcgtcgt tgcccctgtg attgccgacg
     1501 cggtgggcgt acgcggcttg tttctgctga ccggtatttt gaccgttgcc agtatcggcg
     1561 tggtggcgtg gatgactccc gacccggagg tttccaagct gcacgaagat acgcaggcgc
     1621 agccttcgcg cataggcgaa gttttgaaaa accgtaggct gctgacgctc gatttcggca
     1681 ttttcgccct gcacgccgcg caaatggcat tgtttaccgc gctgcctttc gcgatgaccc
     1741 agctcggttt ggaaaaaata cagcattgga aagtctatct gccctcgacc attacgggct
     1801 tggtggtgat ggttccgctg attatcgtcg gcgagacgcg caacaagctc aaacaggttt
     1861 ttgttttggg tatcgtctgt attgcggcgg cgcagctcgg tttgctgtcc ggtatgcgct
     1921 cggtaggctt gattaccgct tatttggttg tttactttat cggttttaat gtgttggaag
     1981 cgagcctgcc gtctatggtt tccaaaatcg cgccgtccga cctgaagggt acggcgatgg
     2041 gcgtgtacaa cacgatgcag tcgctcggac tgtttgccgg cggcgcggca ggcggtttgc
     2101 tgtttcaaaa atacggcttt tccggcgtgt ttgccttttg cagtatattg atgctgctgt
     2161 ggctggtaat tgccgtttta tcgcctgcgc ccaagcccgt caaaaacctc agttaccctg
     2221 tcggcggcgt gtggcagggc aatcaggaag ggttataccg cgccttgtcg gagcttgagg
     2281 gtgtggaaga catcggtttc agtttcgacg ggcagaccgt ctatctcaaa gtgttgcaga
     2341 agggtttcga tcaggctgcc gctgaaaaaa tcatcacagg agtttaaaaa atgtcattga
     2401 acaaagtcat cctcatcggc cgcctcggac gcgatcccga agtgcgctat atgcccaacg
     2461 gcgaggcggt ttgtaatttc agcgtcgcca ccagcgaaac ttggaacgac cgcaacggcc
     2521 aacgtgtaga gcgtactgag tggcacaaca tcaccatgta ccgcaaactg gcggaaattg
     2581 ccgggcaata cctcaaaaaa ggcgggctgg tttatctgga aggcagaatc caaagccgca
     2641 aataccaagg caaagacggc atcgaacgca ccgcttacga tattgtcgcc aacgaaatga
     2701 aaatgttggg cgggcgcaat gaaaacagcg gcggtgcgcc ttacgaggaa ggttacggtc
     2761 agagtcagga ggcttaccaa cgccccgcgc agcaaagccg gcagcccgcc tccgacgcgc
     2821 cgtcccatcc ccaagaagca ccagccgcgc cgcgccgcca acccgtgcct gccgccgccc
     2881 cggtcgagga cattgacgac gatatcccgt tctgaatttt acggccggac atcctcgcgg
     2941 agggaaatca taaaggacgg agaaacctta aaccttacgg ggcagggttt ctcttttttg
     3001 catttgggcc ggcttgttgc cgccctttgc gttgggcgga acgttgcgat tgcgccgttc
     3061 gggcgttttg aggcagtgat gcctgccgca cgtccccgct gttttcagac
//
LOCUS       DAXIFD010000184         3097 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.184, whole genome shotgun sequence.
ACCESSION   DAXIFD010000184 DAXIFD010000000
VERSION     DAXIFD010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.184"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(311..787)
                     /gene="greA"
                     /locus_tag="ACFOCN_001872"
     CDS             complement(311..787)
                     /gene="greA"
                     /locus_tag="ACFOCN_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HFC6970966.1"
                     /translation="MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSE
                     NAEYEAAKELQGFIEGRISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEH
                     VTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI"
     gene            1182..2483
                     /gene="aroA"
                     /locus_tag="ACFOCN_001873"
     CDS             1182..2483
                     /gene="aroA"
                     /locus_tag="ACFOCN_001873"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HFC6970967.1"
                     /translation="MTESVRLPVARLKPSTVALPGSKSISNRTLLLAALSDNACEIHS
                     LLKSDDTDRMLEALDKLGVQIEYLAEDRLKVHGTGGRFPNRTADLFLGNAGTAFRPLT
                     AALAVLGGDYHLHGVPRMHERPIGDLADALRIAGADVEYLGKEHYPPLHIGKRQDNGE
                     RVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVAN
                     ENYRVFKIPADAHYHAPEHLHVEGDASSASYFLAAGLIAATPVRVTGIGANSIQGDVA
                     FARELEKIGADVVWGENFVEVSRPKERAVQSFDLDANHIPDAAMTLAIVALATGQTCT
                     LRNIGSWRVKETDRIAAMANELRKLGAKVVEEAEAIHITPPKTLTPDAVIDTYDDHRM
                     AMCFSLVSLLGVPVVINDPKCTHKTFPTYFDVFSSLTETTE"
     gene            complement(2526..3059)
                     /locus_tag="ACFOCN_001874"
     CDS             complement(2526..3059)
                     /locus_tag="ACFOCN_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6970968.1"
                     /translation="MFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRI
                     SHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTAR
                     DMAAASRKIPDSRLKAGDLVFFNTGGTHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLS
                     TPFYAKNYLGAHTFFTE"
BASE COUNT          649 a          829 c          841 g          778 t
ORIGIN      
        1 attttaggtt tctgattttg gttttctgtt tttgagggaa tgacgggatg caggttttct
       61 taaccctgcg tcctagattc ccgcttttgc gggaatgacg gcgacagggt tgctgttata
      121 gtggatgaac aaaaaccagt acggggttgt ctcgccttag ctcaaagaga acgattctct
      181 aaggtgctga agcaccaagt gaatcggttt cgtactatct gtactgtctg cggcttcgtc
      241 gccttgtcct gatttttgtt aatccactat aatttcctgc gtgtgtcggg tgtatcgaaa
      301 tcaagccgaa tcaaatatat cggacttcga taatgtcgta ttcgcgcacg ccgcccgggg
      361 cttggacttc cgccgtatcg ccctcttcct tgccgattaa ggcgcgggca atcggtgagc
      421 cgacatagat tttgccctgt ttgatgtcgg cttcgtcttc gccgacaatt tgataggtaa
      481 cgtgttcttc cgtttccaaa tcttccagcg taaccgtcgt accgaacacg attttgcctt
      541 cggcgtggat ttcggtcgga ttgatgatgt gggcaacgga aagtttgtgt tccagctcgg
      601 aaatgcggcc ctcgataaag ccttggagtt ctttggcggc ttcgtattcg gcgttttcgg
      661 acaaatcgcc gtgcgaacgg gcttcggcaa tcgcttcgat cacttcggga cgcgccacgc
      721 ttttgagctg ctgcaattcc tgtttcagca attccgcacc gcgtacggtc agggggattt
      781 tttgcatcgg tcttttttct ccatattccg gcacaccgtt ttgcggcagc aagcataccg
      841 cgtaccgtct tgttttgtgc gtccggatat taaaataaaa atacaagccg cccggaaaat
      901 cggcggcttg tctgtcgttg aacagcggct attctaccaa attctatgaa attggcaatc
      961 gtgccgtgcc gccgacaaac gcgccatgtc cgcaacaaaa gctgaaaata tgccgtcaaa
     1021 gaaattttag aaacaaaaaa tttaaaaata atcaattttc ggcataaaaa accacattta
     1081 cggactttaa aaccgaaaat gccaagcctg agatttttca tacagcattt gcaccagtat
     1141 aatgcaggct gtttttatct ttataatatt gacgttttgc catgaccgaa tccgtccgcc
     1201 tccccgtcgc ccgtctcaaa ccttccaccg tcgccctgcc cggctccaaa agcatcagca
     1261 accgcaccct gctgcttgcc gccttgtccg acaatgcttg cgaaatccat tccctgctca
     1321 aatccgacga taccgaccgt atgctcgaag cactcgataa actcggcgtt caaatcgaat
     1381 atcttgccga agaccgtctg aaagtgcacg gcacaggcgg acgcttcccc aaccgcactg
     1441 ccgatttgtt tttgggcaac gcgggcacgg cgttccgtcc gctgactgcc gcacttgccg
     1501 ttttgggcgg cgattatcat ctgcacggcg tgcctcgtat gcacgaacgc cccatcggcg
     1561 atttggccga tgcgctgcgg attgccggcg ccgatgtcga atatctcggc aaggaacact
     1621 atccgccgct tcatatcggc aaacgtcaag acaacggcga acgcgtgatt ccgattaaag
     1681 gcaatgtgtc cagccagttt ctgaccgccc ttttaatggc gttgccgctg accgggcagg
     1741 cgtttgaaat ccgtatggtc ggcgaattga tttccaagcc ctatatcgac attactttaa
     1801 aactgatggc gcaattcggc gtacaggttg ccaatgaaaa ctaccgcgtc ttcaaaattc
     1861 ccgccgatgc gcactaccac gcgcccgaac acttgcacgt cgaaggcgat gcctccagcg
     1921 cgtcctactt cctcgcagcc ggtttgattg ctgccacgcc cgtgcgcgtg accggcatcg
     1981 gcgcaaacag catacagggc gatgtcgcct ttgcccgcga gctggaaaaa atcggggcgg
     2041 acgtggtttg gggcgaaaac ttcgtcgaag tttcacgccc gaaggaacgt gccgtccaat
     2101 cctttgattt ggatgcgaac catatccccg atgccgccat gaccctcgcc atcgtcgcgc
     2161 ttgctacagg gcaaacctgc acgctgcgca acatcggttc gtggcgcgtc aaagaaaccg
     2221 accgcatcgc cgcgatggca aacgagttgc gcaaactcgg ggcaaaagtc gtcgaagaag
     2281 ccgaagcaat tcacatcacc ccgcccaaaa cgctgacacc cgacgccgtc atcgacacgt
     2341 acgacgacca ccgcatggcg atgtgtttct cgctggtttc gctgttgggc gtacccgtcg
     2401 tcatcaacga tccgaaatgc acccataaaa ccttcccgac ttatttcgac gtgttctctt
     2461 cactgaccga aacaacggaa taaggcggca ttttgccgcg attccggcgc ggcgcggcgg
     2521 gcggctcatt ctgtaaagaa agtatgtgcg ccgaggtagt ttttggcgta aaacggtgtg
     2581 gagagttttt cggttttgat ggttttgccg ctgctggggg catggatgaa ttcgccgttg
     2641 ccgatataga gtccgacgtg tgagtagcgg tgtgtgccgc cggtgttgaa gaatacgagg
     2701 tcgccggcct taaggcggct gtcggggatt ttgcggcttg ccgccgccat gtcgcgggcg
     2761 gtgcgcggca gcttgacgtt gagggcgttt ttgtaaacga attgaatcat gccgctgcaa
     2821 tcgaagccgg ttgcggtgct gctgccgccc catttgtagg gcgtgccgat gagtccgagg
     2881 ctgtggagca tgagttcctg cgagccttgt gtgcggtcga tgtggctgat gcggacggct
     2941 tggatttgcc ggactgtctg tttgggtttc ggttggcggt gtttgccgga ggtcgtgccg
     3001 catgaggcga ggagcagtgc gctgagacag aggaaaaggg ttttgtcggg gggaaacatg
     3061 gtttttcctt tgcgggttcg gatatccgtc tgaaggt
//
LOCUS       DAXIFD010000185         3088 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.185, whole genome shotgun sequence.
ACCESSION   DAXIFD010000185 DAXIFD010000000
VERSION     DAXIFD010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.185"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            157..786
                     /locus_tag="ACFOCN_001875"
                     /pseudo
     CDS             157..786
                     /locus_tag="ACFOCN_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086557955.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(833..2242)
                     /gene="dacB"
                     /locus_tag="ACFOCN_001876"
     CDS             complement(833..2242)
                     /gene="dacB"
                     /locus_tag="ACFOCN_001876"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HFC6970969.1"
                     /translation="MNFPKTAASLLLLLASLAAHALDTGRIPQNEIAVYVQELDSGKV
                     IIDHRSDVPVNPASTMKLVTAFAAFKTFGSNYRWATEFKSNGTVNDGTLDGNLYWAGS
                     GDPVFNQENLLAVQRQLREQGIRNITGHLMLDHSLWGEVGSPDDFEADSGSPFMTPPN
                     PTMLSAGMVMVRAERNAADSTDILTDPPLPHIFAQNNLKITASQAACPSIKKLMRASF
                     SDNTLKLRGNIPESCLGKPVGVRMFALDELIRQSFTNHWLLGGGRISDGIGISDTPEG
                     AQTLAVAHSKPMKEILTDMNKRSDNLIARSVFLKLGGDGKLPAVSEQAASAVRRELAV
                     SGIDIADLVLENGSGLSRKERVTARMMAQMLETAYFSPFAQDFIDTLPIAGTDGTLRN
                     RFKQSGGLLRLKTGTLNNVRALAGYWLGDKPMAVVVIINSGRAVSLLPDLDNFVAKNI
                     ISGGDGWLDAKLMCKERRA"
     gene            2407..2973
                     /locus_tag="ACFOCN_001877"
     CDS             2407..2973
                     /locus_tag="ACFOCN_001877"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HFC6970970.1"
                     /translation="MAKKISILVGSLRRASFARKVALNAAEMFPEGWQAEIVEIGHLP
                     LYNFDYDDPAVEDVPLPESYTVFRETIKASDGILFVTSENNRTIPACLKNAVDIGSKP
                     NADVAWKNKPAGIISHSVGKMGGYSSQKNLRLALSYFDMPVTGQPEVFLGNSPTLFDE
                     NGKLIDSARDFVQSYINQFVGLIERNAK"
BASE COUNT          759 a          718 c          825 g          786 t
ORIGIN      
        1 ccgtccacat atagtggatt aaatttaaac cggtacagcg ttgcctcgcc ttagctcaaa
       61 gagaacgatt ctctaaggtg ctcaagcacc aagtgaatcg gttccgtgct atttgtactg
      121 cctgcggctt cgtcgccttg tcctgattta aatttaatcc actataaact cattgaactg
      181 tttgtcgcag gcgtaactgc aagaaaggca gcagagttag taggcgttaa taaaaatacc
      241 gcagcctatt attttcatcg tttacgatta cttatttatc aaaacagccc acatttagaa
      301 atgtttgatg gcgaagtaga agcagatgaa agttattttg gcggacaacg caaaggcaaa
      361 cgtggtcgcg gtgctgccgg taaagtcgcc gtattcggtc ttttgaagcg aaatggtaag
      421 gtttatacgg ttacagtacc gaatactcaa accgctactt tatttcctat tatccgtgaa
      481 caagtgaaac ctgacagcat tttttgtagc tatgatgtat tagatgtgcg cgaatttagc
      541 cattttagct tcgctgaaac ttcgttttcg tatcaatcac agcacacatt ttgccgaacg
      601 acaaaaccat attaatggaa ttgagaactt ttggaatcaa gcaaaacgtc atttacgcaa
      661 gtttaacggc attcccaaag cgcattttga gctgtattta aaggagtgcg aatggcgttt
      721 taacaacagt gagataaaag ttcttgttcc atcttaaaac aattagtaaa accgagttta
      781 tcctagttat ctaggacagc cccttaaatt taatccacta tattttcctg tttcaggctc
      841 ggcgttcttt gcacatcagt ttcgcatcca gccagccgtc gccgccggag atgatgtttt
      901 tggcaacgaa gttgtccaag tcgggcagca gggaaacggc gcggccgctg ttgatgatga
      961 cgaccaccgc catcggtttg tcgcccagcc aataacctgc aagggcgcgg acattgttga
     1021 gcgtgccggt ttttaagcgc aacagcccgc cgctttgttt gaagcggttg cgtaaagttc
     1081 cgtctgtgcc ggcgatgggc agcgtgtcga tgaaatcttg tgcaaacggg ctgaaataag
     1141 ccgtttccaa catttgcgcc atcattctcg ccgttaccct ttcttttctg gacagacctg
     1201 aaccgttttc caaaaccaaa tccgcaatat cgatgcccga cacggcaagt tcgcgccgga
     1261 cggcagacgc cgcctgttcg gaaacggcgg gcagtttgcc gtcgccgccg agtttgagga
     1321 agacggaacg cgcaattaga ttgtccgaac gcttgttcat gtccgtcaaa atttccttca
     1381 tcggctttga gtgtgcaacg gcaagcgtct gcgcgccttc cggcgtgtcg gatatgccga
     1441 tgccgtctga aatccgtccg ccgccgagca gccagtggtt ggtaaaactt tgccggatca
     1501 gttcgtcaag cgcgaacatc cggacaccga caggcttgcc caaacagctc tcgggaatat
     1561 tgccgcgcaa tttcagcgta ttgtccgaaa aagatgcacg catcagtttt ttgatcgaag
     1621 ggcaggcagc ttgggaggcg gtaattttca agttgttttg ggcgaaaata tgcggcaaag
     1681 gcggatcggt gaggatgtcg gtactgtcgg cggcattgcg ttcggcgcgc accataacca
     1741 taccggcaga cagcatagtt ggattggggg gcgtcataaa cggcgaaccg ctgtcggctt
     1801 cgaaatcgtc ggggctgccg acttcgcccc acaggctgtg gtcgagcatc aggtgtcccg
     1861 tgatattgcg tatgccttgt tcgcgcaact ggcgttggac ggcaagcagg ttttcctgat
     1921 tgaaaacggg gtcgccgctg cccgcccaat acaggtttcc gtcaagcgtg ccgtcgttta
     1981 ccgtaccgtt gcttttaaac tcggtcgccc agcggtaatt gctgccgaag gttttgaagg
     2041 cggcaaacgc ggtaacgagt ttcattgtgg aggcggggtt gacggggaca tccgagcggt
     2101 ggtcaatgat gacttttccg ctgtcaagct cttggacata tacggcgatt tcgttttgcg
     2161 gaatgcgacc tgtatcgagc gcgtgtgcgg cgagggaggc gagaagcagc agcagggagg
     2221 ccgctgtttt ggggaaattc ataggtaaat ctgttacata aaaaaagcaa ttataaggca
     2281 aagccggata agtgggaacg ctgtggcggc gggccggctt gtttgcaggg gaaatcacat
     2341 atataataat cgctatcatt atgaaatgat tgagacgcac aaacttaata ttcaggagga
     2401 atgattatgg ctaagaaaat cagtattttg gtgggcagcc tgcgccgtgc ttcttttgcg
     2461 cgcaaagtgg cattgaatgc ggcggagatg ttccccgaag gctggcaggc ggaaatcgtc
     2521 gaaatcggac atctgccgct ttacaatttc gattatgacg accctgcggt ggaagatgtg
     2581 ccgctgcccg aaagctacac ggttttccgc gaaacgatta aggcttcgga cggcattttg
     2641 ttcgttacgt ccgaaaataa ccgcaccatt cccgcctgtt tgaaaaatgc ggtggacatc
     2701 ggctcgaaac cgaatgccga cgtggcgtgg aaaaacaaac cggccggcat catcagccat
     2761 tccgtcggca agatgggcgg ttacagttcg caaaaaaacc tgcgccttgc gctgtcttat
     2821 ttcgatatgc ccgtaaccgg acagccggaa gtgtttttgg gcaattcgcc gacactgttt
     2881 gatgaaaacg gcaaattgat cgactcggca agggattttg ttcagtcata tattaatcag
     2941 tttgtcggtt tgattgaaag aaatgccaaa taaacaaaca agtcgaaagg ccgcaaaacc
     3001 ggttcgggtt ttgcggcttt tttatatggg ctgggcagcg tcaaggtttg ccgtttgccg
     3061 gataatgcgc ggcaaatgac cggcgtgt
//
LOCUS       DAXIFD010000186         3078 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.186, whole genome shotgun sequence.
ACCESSION   DAXIFD010000186 DAXIFD010000000
VERSION     DAXIFD010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.186"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..260)
                     /locus_tag="ACFOCN_001878"
     CDS             complement(<1..260)
                     /locus_tag="ACFOCN_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970971.1"
                     /translation="MNMENYFSNLNLDIRTHKLGTFTDQKVTPDVLCAVAECIIEYIE
                     NIGEIFSINDIRYSDYAEYIATAVFKKPSIENAGSEYNKFFS"
     gene            complement(272..2860)
                     /gene="dcm"
                     /locus_tag="ACFOCN_001879"
     CDS             complement(272..2860)
                     /gene="dcm"
                     /locus_tag="ACFOCN_001879"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HFC6970972.1"
                     /translation="MKNQYSKSLHGVFYLAFYDKIHAFFAEQLFQLIINMNKKPTYIS
                     LFSSAGVGCYGFKTNGFECVATNELLEKRLKIQKYNQKCRFDSGYIAGDITLPETQAK
                     LFAEIRRWNTEIDVVIATPPCQGMSVANHKKNNEMARNSLVVESIKIVREVQPKFFIF
                     ENVKAFLKTPCTDTDYQEKPIEEAIWSNLGGHYNILSNVLNFKDYGANSSRTRTLVIG
                     VRKDIHHITPYDIFPKQTPPKTLRTLLADLPPLMQMGEISDDDIYHSYREFDRRMLPW
                     IAQLKEGESAFQNTDSARIPHQIKNGEIIYNQNKNGDKYARWFLDREGPCIHTRNDIL
                     ASQNTIHPTENRVFSVRELMRMMSIPPSFKWTAQDEKQLNALSFDEKKTFLKKEELNI
                     RHCIGESVPTAVLANVAQNIQAALQQSELSMTEIQNLIKRENLSLADNLYRFIEQHFD
                     AYPFSRLLQIAEYANAARSETAAYFTRIDIAFGLVNALPDFKKKKNLRILEPSVGIGN
                     FIPLLAKKYADKEKVIFDLVDIDSNSLNLLSLLLKKLNLGSKFEFNIIHQDFLTATLP
                     ENYDLVIGNPPYGKVKASDKNLALYRKNATNKDTQNIFSFFIDKALTLSKTVALVVPK
                     SVINAPEFQITRQQLITANINRIIDYGEKAFKGVKIETIAFIADQTDKDNQHITIESH
                     IQETLIQNCKNYFFSDNFPYWLIYRNSEFDQIAQKLEFNVFQSFRDRQITKAHTQNSG
                     NVRVLKSRNIGNNEIIDIEGYDSYVDSVAPFSVGKFINRKNVVMIPNLTYKPRAAFLP
                     ENSIADGSVALLTMKKHEKILTQRDLAYYATPEFEQFYRVARNYGSRSMNIDNHSVFF
                     FGLLKD"
BASE COUNT          899 a          566 c          607 g         1006 t
ORIGIN      
        1 tgtgaaaaaa atttattgta ttcgctaccg gcattttcaa tggatggttt tttaaatacg
       61 gcggtggcga tatattcggc ataatctgaa taacgaatat cgttaatgct aaatatttct
      121 ccaatatttt caatatattc gatgatacat tctgctacgg cacataatac atccggggtt
      181 actttttgat cggtaaatgt gccgagttta tgtgttctga tgtctaaatt taagttagaa
      241 aaataatttt ccatattcat tttttactcc tctaatcttt tagcaatccg aaaaaaaaca
      301 cagaatgatt gtctatattc attgaacgag aaccataatt acgggcaaca cggtaaaact
      361 gctcaaattc gggagttgca tagtatgcga gatctcgttg ggttaggatt ttttcgtgtt
      421 ttttcattgt cagtagggca accgagccat cagcaatact gttttcaggc aaaaatgctg
      481 cccgaggttt gtaagtcaga ttgggaatca tcacgacatt tttacggtta ataaatttgc
      541 cgacagaaaa aggggcaact gaatccacat aactatcata accctcaata tcaataatct
      601 cgttgttacc gatattacgg gattttaaaa cccgaacatt gccactattc tgtgtatgcg
      661 ctttggtaat ttggcgatct cggaatgatt gaaatacatt aaattccaat ttttgtgcaa
      721 tttgatcaaa ttcactatta cgataaatca accaataggg aaaattatca gaaaaaaaat
      781 agtttttaca gttttgtatc aacgtttctt ggatatggct ttctatcgta atatgttgat
      841 tgtctttgtc ggtttgatcg gcaataaagg caatcgtctc tatttttacg cctttaaatg
      901 ctttctcgcc gtaatcaata atgcggttga tattggctgt gataagttgt tgtcgggtta
      961 tttgaaactc gggggcgtta atcacacttt tgggaacaac caaagccacg gttttactga
     1021 gcgtcagagc cttatcaata aaaaatgaaa aaatattttg cgtatcttta ttggtagcat
     1081 ttttacggta tagtgccaaa tttttatcac ttgccttaac tttgccgtat ggtggattgc
     1141 cgatgactag atcatagttt tcaggcagcg ttgcggttaa aaaatcctga tgaataatat
     1201 tgaactcaaa tttactgcct aaatttaatt ttttcagcag caatgacagg agatttaaac
     1261 tgtttgagtc aatatccacc aaatcaaaaa taactttttc tttgtctgca tatttttttg
     1321 ccagtagtgg aatgaaatta ccaatgccga cagagggttc taaaatccgt aagttttttt
     1381 tctttttgaa atcaggaaga gcattaacca gtccgaaagc aatatcaata cgggtaaaat
     1441 aagcagccgt ttcgctacgg gcagcattag cgtattcagc aatttgcaaa agccgactga
     1501 atggatatgc gtcaaaatgt tgctcaataa atcggtagag attatcggca agggataaat
     1561 tttctcgttt gattaaattt tgaatttccg tcattgacag ttcggactgt tgcaaggctg
     1621 cctgaatgtt ttgtgcgaca ttggccaaaa cagcggttgg cacagattca ccgatacaat
     1681 ggcggatatt cagctcttct tttttcaaaa aggttttttt ctcatcaaat gacagtgcat
     1741 taagctgttt ttcatcttgt gccgtccatt taaatgatgg cggaattgac atcatacgca
     1801 tgagttcacg cacggaaaat acacggtttt cagtgggatg gatggtgttt tggctggcta
     1861 aaatgtcatt acgggtatgg atgcacggac cctcacgatc taaaaaccaa cgggcgtatt
     1921 tgtctccatt tttgttttga ttgtagataa tttcaccatt tttaatttga tggggaatgc
     1981 gtgcagaatc agtattttgg aaagctgact cgccttcttt aagctgtgca atccacggca
     2041 acatacggcg atcaaattca cgatagctat ggtaaatatc atcatcgcta atttcgccca
     2101 tttgcattaa aggcggcaga tcagccagca atgtacgcaa ggtttttggc ggtgtttgct
     2161 tggggaaaat atcgtacggc gtaatgtgat gaatatcttt tcgcacgcca atcaccagcg
     2221 ttctggtacg actggaattt gcaccataat ctttaaaatt tagtacattg gatagaatgt
     2281 tgtaatgtcc gcccaaattt gaccaaatgg cttcctcaat cggcttttct tgataatcgg
     2341 tatcggtgca gggtgttttt aaaaaggctt tgacgttttc aaaaataaaa aacttgggct
     2401 gaacttcccg aacgattttg attgattcca cgaccaaaga atttcttgcc atttcattat
     2461 tttttttatg gttggcaacc gacattcctt ggcaaggcgg tgtggcaatc acaacatcaa
     2521 tttcagtatt ccagcgtcga atttcggcaa acaatttggc ttgggtttca ggcagggtaa
     2581 tatcgccggc aatataacct gaatcaaagc ggcatttttg attatatttt tggattttta
     2641 ggcgtttttc taaaagttcg ttggttgcta cgcattcaaa accattggtt ttaaaaccat
     2701 agcaaccaac gcctgcactg ctaaataaac tgatgtaggt gggttttttg ttcatattta
     2761 tgatgagttg aaacaactgc tctgcaaaaa atgcgtgtat tttatcatag aaggcaaggt
     2821 aaaacacgcc atgcaatgat ttactatatt gatttttcat caaaaaagtg ctgtttgaac
     2881 agatatacag cggtgttttt tgcaatgcgt ttcaaacttg aggtacgttt ttaatagaaa
     2941 caccgtctga acgccaacct gagacctttg caaaattccc acaaatcccc caattcccac
     3001 caagacattt aggggatttc tcatgagcac tttcttccgg caaaccgccc aagccatgat
     3061 tgccaaacac atcgaccg
//
LOCUS       DAXIFD010000187         3005 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.187, whole genome shotgun sequence.
ACCESSION   DAXIFD010000187 DAXIFD010000000
VERSION     DAXIFD010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.187"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            32..1249
                     /locus_tag="ACFOCN_001880"
     CDS             32..1249
                     /locus_tag="ACFOCN_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6970973.1"
                     /translation="MTHTASKTPKFWLTITAAAFILLITIGMRMTLGLFVQPVVNTTE
                     LSIAQFSLIIAVFQLMWGISQPLSGALADRFGAFRVLSGGAVLLVCACLIAPNIPTYW
                     GLMIAVGLLLAFGTGSGGFSIIMGQVAAQVPAHKRGLASGLVNAGGSAGQFLFAPLVQ
                     GLVVLPEVGWTGTFYVWGAIALLILPVSWWLAGGNNAAHTQHAQATHGQSLGEAVKTA
                     FKTPSYILLHLSFFACGFHIAFLVTHLPTEVALCGLPATVASTAIAIIGLANIAGCVF
                     SGWCTSRVRGKYVLFGLYASRAAMILIYIFSPKTDLNFYIFAAALGFTWLATVTPTAS
                     ITGKLFGTRYLATLFGLKMLSHQIGGFLGSYIGGIVITQFGDYGWMWYADALLAGTAA
                     LLNLPIREPRTAA"
     gene            1246..1377
                     /locus_tag="ACFOCN_001881"
     CDS             1246..1377
                     /locus_tag="ACFOCN_001881"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970974.1"
                     /translation="MKECRLKTLRRHFPNTPPVSGLHDTQISLIKPQTTAAIKPPFK"
     gene            complement(1452..1592)
                     /locus_tag="ACFOCN_001882"
     CDS             complement(1452..1592)
                     /locus_tag="ACFOCN_001882"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970975.1"
                     /translation="MNYRIGNAVCIDEMPDTGRGGQTFAKRTASDASPARAGAASDGI
                     LS"
     gene            1605..2736
                     /locus_tag="ACFOCN_001883"
                     /pseudo
     CDS             1605..2736
                     /locus_tag="ACFOCN_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250655.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
BASE COUNT          728 a          885 c          697 g          695 t
ORIGIN      
        1 ccgcaaactt aaccgactca aaatacacat tatgacgcac accgcatcga aaacacccaa
       61 attttggctg accatcaccg ccgccgcatt catcctgctg attaccatcg gcatgaggat
      121 gacgctcgga ctgttcgtcc aacccgtcgt caacaccacc gaattgagca ttgcccaatt
      181 cagcctcatc atcgccgttt tccaactgat gtggggcata tcgcaaccat tgtccggcgc
      241 gcttgccgac cgtttcggcg cgttcagggt attaagcggc ggcgccgtcc tgctcgtctg
      301 cgcctgcctg attgccccca acatcccgac ttattggggg ctgatgattg ccgtcgggct
      361 gctgctcgca ttcggcaccg gttccggcgg tttctccatc attatggggc aggtcgccgc
      421 ccaagtcccc gcacacaaac gcggcttggc atccggactg gtcaacgccg gcggttcggc
      481 aggacaattc ctgttcgcac cgctggttca aggactcgtc gtcctgcccg aagtcggctg
      541 gacgggcaca ttttacgttt ggggcgcaat cgccctgctg attctgcctg tctcatggtg
      601 gcttgccggc ggcaacaacg ccgcccacac ccaacacgcc caagccacac acggacaaag
      661 cctcggagaa gcagtcaaaa ccgccttcaa aaccccaagc tacatcctgc tgcacctaag
      721 cttttttgcc tgcggcttcc acatcgcctt tctcgtaacc cacctaccca cggaagtcgc
      781 cctgtgcgga ctgcccgcca ccgtcgcatc cacagccatc gccatcatcg gactggcaaa
      841 catcgccggt tgtgtgttct caggctggtg cacaagccgc gttcggggca aatacgtcct
      901 gttcggactg tacgcctcgc gcgccgcgat gatactcatc tacatttttt cgcccaagac
      961 cgacctcaac ttctacattt tcgccgccgc actcggattt acctggctcg ccaccgtcac
     1021 gccgaccgcc tccattaccg gcaaactctt cggcacacgc tacctcgcca ccctgttcgg
     1081 actgaagatg ctcagccacc aaatcggcgg attcctcggc tcgtacatcg gcggcatcgt
     1141 gattacacaa ttcggcgact acggctggat gtggtacgcc gacgcactgc tggcgggaac
     1201 cgccgccctc ctcaacctcc ccatccgcga accccgaacc gccgcatgaa agaatgccgt
     1261 ctgaaaaccc tcagacggca ttttccaaac accccgcccg tttccggact gcacgacacg
     1321 caaatcagcc ttatcaaacc gcaaacaacc gccgcgatta aaccgccatt caaataagtc
     1381 cgttttccct tcgggtgtaa aatcatcaca aaacgcgata ctgtatatcg ccgggcgtta
     1441 tgcagcggat ttcaggataa aatgccgtct gaagccgccc ctgcccgggc gggcgaagcg
     1501 tcggatgcgg tgcgcttggc aaaggtttgc ccgccgcgcc ccgtatccgg catttcatca
     1561 atgcagaccg catttccaat cctataattc aaggtgtccg ccttatgaaa atcgttttta
     1621 tcacaacagt cgcatccagc atttacggtt tccgcgcccc cgtcattaaa aaattaatcg
     1681 gcaaaaacca tcaggtgtat gcctttgtat cggagttttc cgataatgaa ttggatatta
     1741 tcagggaaat gggggttaca cccgttacct accgttcaaa ccgcagcggg ctgaacccgt
     1801 tttccgatat aaaatccacc ttcctcatat ttaaagaact caaaaaaata tcgccggatt
     1861 tggttttccc ttatttcgca aaacccgtga ttttcggcac ttttgccgca aaactggcag
     1921 gcgtgcccag aatcgtcggg atgctggaag gtttgggatt cgcatttacc ccgcaaccgg
     1981 aaggcatacc gttaaaaaca aaaatcataa aggggatttt gattgccttg taccgcattg
     2041 ccctgccgat gttggaaagc ctgattgtat taaaccccga cgacaaagac gaactgacgg
     2101 acaaatacgg catcaaaata aaaaacatcc atattttggg cggaatcggt ctggatttgc
     2161 ggcaatatcc ttattccgag gcggatattc ccgatgaaaa agaacccgta aaattcctct
     2221 ttatcggcag atttctgaaa gaaaagggga ttgatgattt tattcgggcg gcggaacagg
     2281 ttaaggacaa ataccccgat acggttttta ccgctttggg cgcaatcgac aaatcacgcg
     2341 cggggggggg gcgatttgga acgccttgcc gcccgcgata ttatccgttt ccccggtttt
     2401 gtgaacaatg tttccgaagt gataaaagaa catcatatat tcgtattgcc gtcttattat
     2461 agggaaggcg ttccccgaag cactcaggag gcaatggccg tcggcagggc agtgattacg
     2521 acggatgtcc ccggatgcag ggaaacggtc gccgacaagg tcaacggctt cctgatcgaa
     2581 ccttggaatc cccgcatctt ggccgaaaaa atgatttatt ttatcgaaaa cagggaagcc
     2641 gtccgcctga tggggaatgc aagttatgcg attgccaaag ataaattcga tgccgaaaaa
     2701 gtcgatttga aattgctcga tattttgaag gcgtaaacaa ggctgcccgc ttttgagttt
     2761 cggtcatttc tgataaaccc ccgtcattcc cgcgaaagcg ggaatccagg ttcgttgagt
     2821 ttcggtcatt tccgataaat tcttgcaact ttgcgtttct agattcccac tttcgtggga
     2881 atgacggtaa agattgctgt tttcccgaca aattcccgcc atctaaaatc tcgttatcca
     2941 tacaagaacc gaaaatcttg ccattctcac aaaaacagaa attcaaaaac agaaatccca
     3001 aaccc
//
LOCUS       DAXIFD010000188         2982 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.188, whole genome shotgun sequence.
ACCESSION   DAXIFD010000188 DAXIFD010000000
VERSION     DAXIFD010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.188"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            335..1066
                     /locus_tag="ACFOCN_001884"
     CDS             335..1066
                     /locus_tag="ACFOCN_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6970976.1"
                     /translation="MSREINAGGHHFLYGGISGGGVHYWDNKDFSEQCLHLSLGYKNR
                     SVTRSFGIVPFVGQNLLGGSRYNFVGGFNADFSQHLSERWRLTLNAGNMWKHYQEDRT
                     AARYDSHMPLAGATLMYSAPKDWLLYGGADWSHDLTKEAEQASVRKGLRIGAVKTFDG
                     GLGLRANLRYTRRTFDAPGTIVYRFPRKDHEYQANLSFWHDKISWKGFTPQLNFRYLK
                     IDSNMKSFYTRKNTQIFMSVEKDFK"
     gene            1183..2692
                     /gene="ppx"
                     /locus_tag="ACFOCN_001885"
                     /pseudo
     CDS             1183..2692
                     /gene="ppx"
                     /locus_tag="ACFOCN_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004309 - exopolyphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006798 - polyphosphate catabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
BASE COUNT          739 a          851 c          763 g          629 t
ORIGIN      
        1 atttatcgga aatgaccgaa actgaacgga ctggattccc gcttttgcgg gaatgacggc
       61 gacagggttg ctgttatagt ggatgaacaa aaaccggtac ggcgttgtct cgccttagct
      121 cgaagagaac gattctctaa ggtgctgaag caccgagtga atcggttccg tactatctgt
      181 actgtctgag gcttcgtcgc cttgtcctga tttttgttaa tccgctataa acaacgcttc
      241 gtccaaaaaa acgattgaat ttgcgggcag aagctggacg aaaaccgccg acagcctgcc
      301 gcaaaaggca cacggtttgc gctagggctt aggcgtgtcg cgcgaaatca atgcgggcgg
      361 gcatcatttc ctctacggcg gcatcagcgg cggcggcgtg cattattggg ataacaaaga
      421 tttcagcgaa cagtgcctgc acctgtcgct cggctataaa aatcgttcgg taacgcgctc
      481 gttcggcatc gtgccgtttg tcgggcaaaa cctcttaggc ggcagccgat acaatttcgt
      541 cggcggcttt aatgccgatt tctcccaaca cttgagcgaa cgctggcggt tgacactaaa
      601 cgcgggcaat atgtggaagc attatcagga agaccgcacc gccgcccgat acgacagcca
      661 tatgccgctg gcgggcgcga cgctgatgta ttccgcgccg aaagactggc tgctttacgg
      721 cggggcggac tggtcgcacg acttgacgaa ggaggcggaa caggcttccg tccgcaaggg
      781 tttgcgtatc ggcgcggtca aaacgttcga cggcggcttg ggtctgcggg caaacctgcg
      841 ctatacacgc aggacgtttg acgcgcccgg gaccattgtg taccgcttcc cgcgcaaaga
      901 ccacgaatat caggcaaacc tgtcgttttg gcacgacaaa atctcttgga agggctttac
      961 gccgcaactc aatttccgct atctgaaaat cgacagcaat atgaaaagtt tttacacacg
     1021 caaaaacacg cagattttca tgagcgtgga aaaggatttc aaataagcgc aaaaaatgcc
     1081 gtcggcaaca tccgtggaca gaatcaaaaa ccgccgcatc atttattgtc aacgcctgcg
     1141 ccgtcagagt aacattgcgt ttttccccca ccgatatccg ccatgaccac cacccccgca
     1201 aacatcctcg cctccgtcga tttgggttcc aacagtttcc gcctccagat ttgcgaaaac
     1261 aacaacggac aattaaaagt catcgattcg ttcaaacaga tggtgcgctt cgccgccgga
     1321 ctggacgaac agaaaaacct gagtgccgct tcccaagaac aggctttgga ctgtctggca
     1381 aaattcggcg aacgcctgcg cggcttccgc cctgaacagg tacgcgccgt ggcaaccaat
     1441 acattccgcg tcgccaaaaa catcgcagat ttccttccca aagccgaagc ggcactgggt
     1501 ttccccatcg aaatcatcgc cgggcgcgaa gaggcgcggc tgatttatac cggcgtgatc
     1561 cacaccctcc cccccgggcg gcggcaaaat gctggttatc gacatcggcg gcggttcgac
     1621 agaatttgtc atcggctcga cgctgaatcc cgacattact gaaagcctgc ccttgggctg
     1681 cgtaacctac agcctgcgct tcttccaaaa caaaatcacc gccaaagact tccaatctgc
     1741 catttccgcc gcccgcaacg aaatccagcg catcagcaaa aatatgaggc gcgaaggttg
     1801 ggatttcgcc gtcggcacat cgggttcggc aaaatccatc cgcgacgtgc ttgccgccga
     1861 aatgccccaa gaggcggaca ttacctacaa aggcatgcgc gccctcgccg aacgcatcat
     1921 cgaagccggt tcggtcaaaa aagccaaatt tgaaaacctg aaaccggaac gcatcgaagt
     1981 ttttgccggc ggacttgccg tgatgatggc ggcgtttgag gaaatgaaac tcgacaggat
     2041 gaccgtaacc gaagccgccc tgcgcgacgg cgtgttttac gatttgatcg ggcgcggttt
     2101 aaacgaagat atgcgcggac aaacggttgc cgagttccaa caccgctacc acgtcagcct
     2161 caatcaggcg aaacgcaccg ccgagaccgc gcaaaccttt atggacagcc tctgccacgc
     2221 taaaaacgtt acagttcaag agcttgcctt gtggcaacag tatctcggac gcgccgccgc
     2281 gctgcacgaa atcggtttgg acatcgccca caccggctat cacaagcatt ccgcctacat
     2341 cctcgaaaac gccgatatgc cgggtttctc acgcaaagaa cagaccatac ttgcccaact
     2401 ggtcatcggt catcgcggcg atatgaaaaa aatgagcggc atcatcggca ccaacgaaat
     2461 gttgtggtat gccgttttgt ccctgcgcct tgctgccctg ttctgccgtt cgcgccaaga
     2521 cctgtctttc ccgaaaaata tgcagttgcg cacggatacg gaaagctgcg gcttcatcct
     2581 gcgtattgac agggaatggc tggaacgcca tcccctgatt gccgacgcat tggaatatga
     2641 aagcgtccaa tggcaaaaaa tcaatatgcc gtttaaagtc gaggtcgtct gaaccttacg
     2701 gaacaaatgc cgtccaaacc ctgtccagac ggcatttgcc tgtccgcaac atcccgatat
     2761 gcgcggcaca tctgctcgga acggtcatgc aggcgtaaaa aacaaggggc atacaactca
     2821 aaaaccgcct gaaaatcttc aggcggtttc gtttgggttg ccggcaggcg gcatcccatc
     2881 atttttgcca aggcaacaaa ttatttggcg gcatctttca ttttgtctgc cgcttcctga
     2941 gtcgcgtcgg cagctttgtt caaagtatct ttagctgctt ca
//
LOCUS       DAXIFD010000189         2941 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.189, whole genome shotgun sequence.
ACCESSION   DAXIFD010000189 DAXIFD010000000
VERSION     DAXIFD010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.189"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(127..1437)
                     /locus_tag="ACFOCN_001886"
     CDS             complement(127..1437)
                     /locus_tag="ACFOCN_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HFC6970977.1"
                     /translation="MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEG
                     GKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQG
                     RATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
                     PLSSDDLKKLIAKVLALPEYQEFTIETDAQKLLVNTADGDARRLLNLLEQLLRAADTR
                     RLKNLTAEFLADSLGAQIRRFDKGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGG
                     TDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEGELALAQAVLYLAAA
                     AKSNAGYKAYKQMRRFVAENSSDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYAA
                     GESYMPDGLDEPDFYQPVPRGLEIKIGEKLEWLKSLDEEVLKAK"
     gene            1749..2171
                     /locus_tag="ACFOCN_001887"
     CDS             1749..2171
                     /locus_tag="ACFOCN_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970978.1"
                     /translation="MEWVSLFSDPQRDDDSLITLKDEKITVKNYIVPWWKKGENFRKL
                     ELITTGKNDNGNLTVNGIYGIQSFADSQLGYTPELLVKSNNDILFKNNLQSVDVKPHS
                     GNIHLDAKGKIQFNLNVPDVDGVQDVASGKKYRQTIVP"
     gene            2257..2754
                     /locus_tag="ACFOCN_001888"
     CDS             2257..2754
                     /locus_tag="ACFOCN_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
                     /protein_id="HFC6970979.1"
                     /translation="MNVKVHKDTHHFGIHNLNNTDVHLTAEDSDNVIEIKGELADLMP
                     TGNVESTSFLRGIETAFKSNTVLTGNNNKISIATEGKGLGLGVNGLQSNSPYSGRTTG
                     IFINNQSSDLTQPSLDGISTIKLKAVKGNNEVDLNVKNHASVKGIIASHSAKATLEAE
                     GDNIV"
     gene            2859..2941
                     /locus_tag="ACFOCN_001889"
                     /pseudo
     CDS             2859..2941
                     /locus_tag="ACFOCN_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
BASE COUNT          816 a          706 c          697 g          722 t
ORIGIN      
        1 ttaatccact ataccacgtt gtctttattg gctttatcaa taaacaggat aagacctgaa
       61 aaaaagccga tacgcctttt tggtgtaccg gctttgccat actgttctgc ttcagacagc
      121 attgcttcat tttgccttta atacttcttc gtccagcgat ttcaaccatt ccagcttttc
      181 gccgattttg atttccaacc cgcgcgggac gggttggtag aagtccggtt cgtccaagcc
      241 gtcgggcata tagctttcgc cggcggcgta ggcgttcggt tcgtcgtggg cgtagcggta
      301 ttcgcgtccg tagcccaatt ccttcattaa cttggtcggg gcgttgcgaa gatggacagg
      361 cacttcgtcg ctgctgtttt ctgcaacaaa tcggcgcatt tgtttatacg ctttgtagcc
      421 cgcgttggat ttcgcggcgg cggcaaggta caataccgct tgcgccaaag ccagttcgcc
      481 ttcgggcgag cctaagcgtt cgaaggtggc ggcggcatcg ttggcgattt ggaaggcgcg
      541 cgggtcggca agcccgatgt cttcccaagc gatacgcacg atgcggcggg cgaggtagcg
      601 cgggtcggtg ccgccgtcga gcatacggca gaaccaatac agcgcggcgt tcggatgcga
      661 accgcgcacg gatttgtgca gggcggagat ttggttgtag aaactctcgc cgcctttgtc
      721 gaaacggcgg atttgcgccc cgagactgtc ggcgagaaat tcggcggtta agtttttcag
      781 acgacgtgta tcggcggcgc gtaaaagttg ttccaacaaa ttcaacaatc tgcgcgcatc
      841 accgtcggcg gtattcacga gtaatttttg cgcatccgtt tcaatcgtaa actcttggta
      901 ttcaggcaaa gccaatacct tggcaatcag ctttttcagg tcgtctgaag acaagggttg
      961 caaaacatac acctgagcgc ggctcaacag cgcgggattg acttcaaacg acggattttc
     1021 cgtcgtcgca ccaataaagg ttagcaaacc gctttcgaca tgcggcaaaa acgcgtcctg
     1081 ctgcgccttg ttgaagcggt ggacttcatc gacaaacaaa atcgtcgcgc gtccctgctg
     1141 caaagcgatt tcggctttat cgattgcctc gcggatgtcc ttcacgccgg aaaatacggc
     1201 ggaaacaggc aaaaactggg cgttgaaact ctgcgccaaa atccgcgcca acgtcgtctt
     1261 gcccacgccc ggcggccccc acagcaacat agaatgcggc ttgccgcctt ctaccgccac
     1321 gcgcaaaggt ttaccttcgc cgatgaggtg ttcctgcccc accacgtcgt caagcgtatg
     1381 cggacgcaat cgttcggcaa gcggcgcgtc gggttctcgg gcaaacaaat cggtcataac
     1441 ggctccgtca acaggttttc aaacaatatg attatacggc agggaacggc ggcgtgccgc
     1501 atacggattc cgcccctccg tttgccttaa gccgatatta ggcgcatact ggaaaagacg
     1561 agagacttca cacaatatat ccggcacgga gaccgattcc gcatcggcat gacaataccc
     1621 aaatcagcgt ttcaattaaa cattaaggag actaaaatag aaaatttgct ttatctacca
     1681 ttgctttgtt gattcaatcg gcattatgtt ttgaggcgga agcccatgaa tatactaata
     1741 ttcaagagat ggaatgggtg tctttatttt ctgatccgca aagagacgat gatagtctta
     1801 taacccttaa agatgaaaaa atcactgtaa aaaactatat tgtgccttgg tggaaaaaag
     1861 gtgaaaactt tagaaaatta gaacttatta ccactggtaa aaatgataat ggaaatttaa
     1921 cggtaaatgg aatttacggc atccaatctt ttgcagactc tcaattggga tatacgcctg
     1981 aattattggt aaaaagcaat aatgatattc tatttaaaaa taatctccaa tctgttgacg
     2041 tgaaacccca ttccggaaat atccatttgg atgccaaagg aaaaattcaa tttaatttga
     2101 atgttcccga tgttgatggg gtacaagatg tagccagtgg aaaaaaatac cgacaaacaa
     2161 tagtgcctta gtgcggtatg tcaacactat cagccccccg atgaaaatga caaaggcagc
     2221 atatcctttc attcaaaaac aggcaatttg ttcaatatga acgttaaagt tcataaagac
     2281 acacaccatt tcggtattca caacctcaac aataccgatg ttcatctgac tgccgaagac
     2341 agcgataatg tgattgagat taaaggggaa ctcgccgacc ttatgccgac aggaaatgtt
     2401 gagagtacaa gttttttaag gggcattgaa acggctttta aatccaatac cgtattaacg
     2461 gggaataaca ataaaatatc catcgccact gagggcaagg gcttgggatt gggcgtaaat
     2521 ggtctccagt ccaactcccc ctattccgga cgcacgacgg gcattttcat caataatcaa
     2581 tcaagcgacc ttacccaacc ttcccttgat ggcatcagca ctatcaagct caaagccgtc
     2641 aagggaaata atgaagttga tttaaatgta aaaaaccacg cctccgtaaa aggcattatc
     2701 gcgtcgcatt ctgcaaaagc aacgcttgaa gccgaagggg acaatattgt ctaggttaaa
     2761 aatccggaca ccaatacggc tttaatcgat gctttgaaaa aacaataccc caatgcttcg
     2821 aaagaactat acagggtggg ggttcaatcc acgactggaa cagtacgcat ttcgccaaac
     2881 ggcaaaatcg cattaacgga attgaaaact tttggaattg tacaaaacgg catttgcgtc
     2941 a
//
LOCUS       DAXIFD010000190         2887 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.190, whole genome shotgun sequence.
ACCESSION   DAXIFD010000190 DAXIFD010000000
VERSION     DAXIFD010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.190"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..754
                     /locus_tag="ACFOCN_001890"
     CDS             <1..754
                     /locus_tag="ACFOCN_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6716 putative glycosyltransferase"
                     /protein_id="HFC6970980.1"
                     /translation="NKFKERYNLSCTNILYGYPILRKKHHCSDGNKVYFIDQVKIPDG
                     KKERLLILKKLIALANRYPHKDLVLLLRVHQNDITVHEDKYSYAELAKNMKLPDNFKI
                     ERKRTQDALQEMGYCLSFSSTMLFEAESCGIPIGVISDLGVDKKYANTHFKDSGVLVN
                     LDTVDLDSPNTINPTWAELYTNPDSLSSKEFNQLLEVTSTQPPSFDNYFIAVNDVQPV
                     SMVLLRKFKKLIYHPKQFFVDSKLYKLIKFTK"
     gene            802..1665
                     /gene="galU"
                     /locus_tag="ACFOCN_001891"
     CDS             802..1665
                     /gene="galU"
                     /locus_tag="ACFOCN_001891"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFC6970981.1"
                     /translation="MQKIRKAVFPVAGMGARFLPATKASAKEMLPIVDKPLIQYAAEE
                     AVAAGCTELIFITGRNKRNIEDHFDKAYELETELEMREKHKLLGYVQKILPDHVSCIF
                     IRQAEALGLGHAVLCARPAVGNEPFAVILADDLIDAPQGALKQMVDIYNQSGNSILGV
                     ETVDPSQTGSYGIVEVEQLKSYQRVTNIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     NLPRGAGGEIQLTDGIARLLDHEFVLAHAFEGKRYDCGSKLGYLEATVAYGLKHPELK
                     DDFKELLKQFV"
     gene            1748..2764
                     /gene="galE"
                     /locus_tag="ACFOCN_001892"
     CDS             1748..2764
                     /gene="galE"
                     /locus_tag="ACFOCN_001892"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFC6970982.1"
                     /translation="MNILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRL
                     KTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPIKYYDNNVS
                     GSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERIL
                     TDIQKADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAVF
                     GDDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAF
                     EAASGLTIPYEVKPRRAGDLACFYADPAYTKTQTGWETKRDLAQMMEDSWRWVSNNPN
                     GYDD"
BASE COUNT          833 a          569 c          650 g          835 t
ORIGIN      
        1 caataagttc aaagaacgtt acaacttatc gtgtacaaat attttatatg gttatcctat
       61 cctacgaaaa aaacaccatt gctctgatgg caataaagtt tatttcattg atcaagtaaa
      121 aattccagat ggaaaaaaag aaagattatt aattctaaaa aaattaatag cactggctaa
      181 tcgctatcca cataaagatt tagtactatt attacgtgtc catcaaaatg atatcacagt
      241 acatgaagat aaatactctt atgctgaatt agcaaaaaat atgaaattgc ctgataattt
      301 taaaatagag agaaaacgga cacaagatgc cttacaagaa atgggatatt gtttatcatt
      361 ctcttcaaca atgttatttg aagctgaaag ctgcggaatt cctattggtg tcattagtga
      421 tttaggggtt gacaagaaat atgccaatac acatttcaaa gatagtggtg ttttggttaa
      481 tttagatacg gtagacttgg actctccaaa taccattaat ccaacttggg ctgaactata
      541 tactaatcca gatagcctct cttcaaaaga gtttaaccaa ttattagagg ttacttctac
      601 tcaaccacct agttttgata attattttat tgcagttaat gacgttcagc ctgtatctat
      661 ggttctgtta cgtaaattta aaaagcttat atatcatcct aagcaattct ttgttgattc
      721 aaaactatat aaattaatta aatttactaa ataattttta ctatgggttg ccttatttat
      781 ttcaaaggag tgacataaaa aatgcaaaaa attcgtaaag ctgtattccc tgtagctggc
      841 atgggagccc gattcttacc tgccacgaaa gccagcgcta aagaaatgct gccaatcgtg
      901 gacaaaccgt taattcaata tgctgcggaa gaagccgttg ccgcgggttg tactgaattg
      961 atttttatca ccggccgtaa taagcgtaat attgaagacc acttcgataa agcctatgag
     1021 ttggaaactg aactggaaat gcgtgaaaag cataaattgc ttggctatgt gcaaaaaatt
     1081 ctgcctgatc atgtcagctg tattttcatt cgtcaggcag aagctttggg cttgggtcat
     1141 gcggtattat gcgcccgtcc tgctgtcggt aatgagcctt ttgccgtgat tttggccgat
     1201 gacttgattg atgcaccaca aggcgcactc aagcagatgg tagatattta caatcaaagc
     1261 ggcaacagca ttttaggggt agaaacagtc gatccttcgc aaaccggttc atacggcatt
     1321 gtcgaagtgg aacagctgaa aagctatcag cgtgtaacca atattgtgga aaaaccaaag
     1381 cctgaagatg cgccgtcaaa tttagcggta gtcggccgtt atattttgac accgcgtatt
     1441 tttgatttgc tgactaatct acctcgtggt gcaggtggtg aaatccagct aactgatggt
     1501 attgcccgcc tacttgacca tgaatttgtc ttggcgcatg cgtttgaagg taagcgttat
     1561 gattgtggca gtaagttggg ctatctggaa gccacggtag cttatggctt gaagcatccc
     1621 gaattaaaag atgatttcaa agaattattg aagcaatttg tataatttta aggccgtctg
     1681 aaaaagaaaa ggcatcatgt tttttacact ttcaggcggc cttttaaaca taaagaagga
     1741 aaacgtgatg aacattctcg ttaccggcgg caccggtttt atcggctcgc acaccgttgt
     1801 ttctttgctg aaaagcggtc atcaagtcgt gattttggat aacctatgca attccagcat
     1861 caatatcctg ccacgcttga aaacgattac cggccaagag attccgtttt atcaaggcga
     1921 tatccgcgat cgtgagattt tgcgccgtat ttttgcggaa aaccgcattg attcggtgat
     1981 tcattttgcc ggcttgaaag cggtgggtga aagtgtggcc gagccgataa aatattatga
     2041 taataatgtt tccggcagct tggtgttggc ggaagaaatg gcgcgtgcgg gcgtgtttag
     2101 cattgtgttc agttcttcgg cgacggttta tggcgatccg ggcaaagtgc cttataccga
     2161 ggatatgcca ccgggcgaca ccaccagccc ttacggcgca tcgaaatcga tggttgagcg
     2221 cattctcact gacattcaaa aagccgatcc gcgctggagc atgattttgt tgcgttattt
     2281 caatccgatt ggcgcgcatg aaagcggttt gattggcgag cagccaaacg gtatcccaaa
     2341 taatttgttg ccttatatct gccaagtggc ggcaggcaaa ctgccgcaat tagcggtatt
     2401 cggtgatgac taccctaccc ctgatggcac gggtatgcgc gactatattc atgtgatgga
     2461 tttggcagaa ggccatgtcg cggctatgca ggcgaaaagc aatgtagcag gcacgcattt
     2521 gttgaactta ggttccggcc gcgcttcttc ggtgttggaa atcatccgcg catttgaagc
     2581 agcttcgggt ttgacgattc cgtatgaagt caaaccgcgc cgtgccggtg atttggcgtg
     2641 cttctatgcc gaccctgcct acaccaaaac gcagaccggt tgggaaacca agcgtgattt
     2701 ggcgcagatg atggaagact catggcgttg ggtcagcaac aacccaaatg gctacgacga
     2761 ttaagttgac ctgatacagg ccgtctgaaa gagatgtttt cagacggcct ctttatctga
     2821 aaaacacaca ttctgtctgc tataatctgt ttatattttt tggctatcct ctgaaattta
     2881 tgagaaa
//
LOCUS       DAXIFD010000191         2877 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.191, whole genome shotgun sequence.
ACCESSION   DAXIFD010000191 DAXIFD010000000
VERSION     DAXIFD010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.191"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..335
                     /locus_tag="ACFOCN_001893"
     CDS             <1..335
                     /locus_tag="ACFOCN_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HFC6970983.1"
                     /translation="GGGLTNPTVPSKYTNVKKSSVRIGKHAILGTNVTVLPGVTIGDG
                     VAVGAGAIVRKNLEPWTIYVGVDCKPLKRRSQDKILELEKHLVAEFNLDLCPIIPSPN
                     LPKPKETR"
     gene            332..895
                     /gene="gmhB"
                     /locus_tag="ACFOCN_001894"
     CDS             332..895
                     /gene="gmhB"
                     /locus_tag="ACFOCN_001894"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HFC6970984.1"
                     /translation="MKLIILDRDGVINQDRDNFVKSVDEWIPVEGSMDAVAFLTQAGY
                     TVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKP
                     KPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHEL
                     PEHTQVFDTLLDFSQYIMQENAAPQAD"
     gene            925..1668
                     /locus_tag="ACFOCN_001895"
     CDS             925..1668
                     /locus_tag="ACFOCN_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6970985.1"
                     /translation="MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVKI
                     LNLSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFK
                     IPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLARKNEGYWITIFPEGTRLAPGKRGK
                     YKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELM
                     EKCEHLIETQQPLISGAGPFAAKMPSETA"
     gene            1665..2357
                     /locus_tag="ACFOCN_001896"
     CDS             1665..2357
                     /locus_tag="ACFOCN_001896"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6970986.1"
                     /translation="MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCF
                     SVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPEHIWFHGRQLALTAHQDTQILLMP
                     SEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPAPSSLTSAKTFWGV
                     CRKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHADHSRAFWALTRRFAPYTPEAKQW
                     LKIHGRELFALG"
     gene            2315..2653
                     /locus_tag="ACFOCN_001897"
     CDS             2315..2653
                     /locus_tag="ACFOCN_001897"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6970987.1"
                     /translation="MAQNPRQGTFRLRLTRPGQASANSDLLPNGHPESSITAGDTYRC
                     RRFQTASVPEQARARPIQTAMTLCRRFGAGWRHTRRLPRFISHRPSETRNPPGPTCGM
                     KRLSWREVFY"
BASE COUNT          723 a          905 c          696 g          553 t
ORIGIN      
        1 atgggggggg gttaaccaat ccaacagtcc catctaaata tactaatgtt aaaaaatcta
       61 gtgttagaat tggaaaacat gcaattttag gaacaaatgt aacagtatta ccaggcgtta
      121 ctattggtga tggggttgct gttggagcag gggctatagt gagaaaaaat cttgagccgt
      181 ggactattta tgtcggggta gattgtaaac cactgaagcg cagatcacaa gataaaatat
      241 tggagttaga gaaacatctt gtagcagaat ttaatctaga tttatgtcct ataatcccat
      301 ccccgaacct gcccaaacca aaggaaacgc gatgaaactc atcattctcg accgcgacgg
      361 cgtcatcaat caggaccgcg acaacttcgt caaatccgtt gacgagtgga tacctgtcga
      421 aggcagcatg gatgcggtgg catttctgac gcaggcaggc tacaccgtcg ccgttgccac
      481 caaccaatcc ggcatcgggc gcaaatattt taccgttcaa aaccttaccg aaatgcacgc
      541 caaaatgcac cgcctcgtcc gtcaggcagg cggcgaaatc aacggcatct ggttctgccc
      601 gcacaccgat gccgacaact gcaactgccg caagcccaaa ccgggtatga ttgaagacat
      661 catcggacgc ttcaacgccc aagcctcgga aacctggctg gtcggcgaca gcctgcgcga
      721 tttgcaggca atcgatgccg tcggcggaaa acccgcgctg gttctgaccg gaaaaggcaa
      781 aaaaacgctc tcccaacacg gacacgaatt acccgaacac acacaggttt tcgatacctt
      841 gctcgatttc tcacaataca tcatgcagga aaacgccgca ccgcaagccg actgaacata
      901 ccgcatttcc gacaaggcaa aaccatgctc atcatccgca acctgattta ctggctgata
      961 ctctgttcca ccctgatttt cctctttccc tttatgctgc tcgcctcgcc tttccgggac
     1021 ggggcgcaca agatggcgcg ggtctgggtc aaaatcctca acctctcgct caaacacatc
     1081 gtcgggctca aataccgcat catcggcgcg gaaaacatcc ccgaccgccc cgccgtcatc
     1141 tgcgccaaac accaaagcgg ctgggaaacg ctcgcccttc aggacatttt tccgccgcag
     1201 gtttacgttg ccaaacgcga gttgttcaaa atcccctttt tcggctgggg cttgaaactg
     1261 gtcaaaacca taggcataga ccgcaacaac cgccgcgaag ccaacgagca gctcataaaa
     1321 caggggttgg cgcgcaaaaa cgaaggctat tggattacca ttttccccga aggcacgcgc
     1381 cttgcgcccg gaaaacgcgg caaatacaaa ctcggcggcg cgcgcatggc gaaaatgttt
     1441 gagatggaca tcgtccccgt cgccctcaac agcggcgaat tttggccgaa aaactccttt
     1501 ctgaaatatc cgggggaaat caccgtcgtc atctgtccga ccatcccgca cgcaagcggc
     1561 agcgaagccg aattgatgga aaaatgcgaa catctcatcg aaacgcaaca accgcttatt
     1621 tccggcgcag gcccgtttgc cgccaaaatg ccgtctgaaa ccgcatgacc gcctttgtcc
     1681 acaccctttc agacggcatg gaactgaccg tcgaaatcaa gcgccgtgcc aagaaaaacc
     1741 tgattatccg ccccgccggc acacataccg tccgcatcag cgtcccaccc tgcttctccg
     1801 tctccgctct aaaccgctgg ctgtatgaaa acgaagccgt cctgcggcaa acactggcga
     1861 aaacaccgcc gccgcaaact gccgaaaacc ggctgcccga acatatctgg ttccacggca
     1921 gacagcttgc cctcaccgcc catcaagaca cgcaaatcct gctgatgccg tctgaaatcc
     1981 gtgttcccga aggcgcaccc gaaaaacagc ttgcgctgct gcgggacttt ttggaacggc
     2041 aggcgcacag ttacctgatt ccccgcctcg aacgccacgc ccgcaccaca caactgttcc
     2101 ccgccccctc ctcgctgacc tctgccaaaa ccttctgggg cgtgtgccgc aaaaccacag
     2161 gcatacgctt caactggcgg ctagtcggcg caccggaata cgttgccgac tatgtctgca
     2221 tacacgaact ctgccacctc gcccacgccg accacagccg cgcgttctgg gcactgaccc
     2281 gccgcttcgc accctacacg cccgaagcga aacagtggct caaaatccac ggcagggaac
     2341 ttttcgcctt aggctgacgc ggcccgggca ggcatccgcc aattcagacc tcctcccaaa
     2401 cggacatccg gaaagcagca tcacagccgg cgacacatac cgctgccgcc gctttcagac
     2461 ggcatccgtg ccggaacagg cacgcgcccg cccgattcaa accgcgatga cgctttgccg
     2521 ccggttcggg gcaggatggc ggcacacacg ccgtctgccg cgtttcattt cacaccgccc
     2581 ttccgaaacc cgaaacccgc ccggtccgac gtgcggtatg aaacgcttaa gctggcgcga
     2641 agtcttttac tgatttgccc gcgaaaatgc cgtctgaaag gttttcggac ggcatttttt
     2701 tgcgtttccc aggatggcgg cggattcgta aaaggcggtc agggtggatt gtaggatggg
     2761 ttgagacctg ccgaatccgc cgcatctgcc aaatctaccg ccgtcattcc tacgaaagtg
     2821 ggaatctaga acgcggggtt aagaaaacct gcatcccgtc attcccacga aagtggg
//
LOCUS       DAXIFD010000192         2877 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.192, whole genome shotgun sequence.
ACCESSION   DAXIFD010000192 DAXIFD010000000
VERSION     DAXIFD010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.192"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..528
                     /locus_tag="ACFOCN_001898"
     CDS             205..528
                     /locus_tag="ACFOCN_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003775941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFC6970988.1"
                     /translation="MQNETINPKQHLAAIKEYWQPEIINRHGFQFRLVKLLGDYGWHT
                     HGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSENGCSLVLIELSD
                     SSEAV"
     gene            642..2819
                     /gene="tdfF"
                     /locus_tag="ACFOCN_001899"
     CDS             642..2819
                     /gene="tdfF"
                     /locus_tag="ACFOCN_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010950972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent iron piracy receptor TdfF"
                     /protein_id="HFC6970989.1"
                     /translation="MTRFKYSLLFAALLPVYAQADVSVSDDPKPQESTELPTITVTAD
                     RTASSNDGYTVSGTHTPLGLPMTLREIPQSVSVITSQQMRDQNIKTLDRALLQATGTS
                     RQIYGSDRAGYNYLFARGSRIANYQINGIPVADALADTGNANTAAYERVEVVRGVAGL
                     LDGTGEPSATVNLVRKRPTRKPLFEVRAEAGNRKHFGLGADVSGSLNTEGTLRGRLVS
                     TFGRGDSWRQRERSRDAELYGILEYDIAPQTRVHAGMDYQQAKETADAPLSYAVYDSQ
                     GYATAFGPKDNPATNWANSRHRALNLFAGIEHRFNQDWKLKAEYDYTRSRFRQPYGVA
                     GVLSIDHNTAATDLIPGYWHADPRTHSASVSLIGKYRLFGREHDLIAGINGYKYASNK
                     YGERSIIPNAIPNAYEFSRTGAYPQPASFAQTIPQYGTRRQIGGYLATRFRAADNLSL
                     ILGGRYSRYRTGSYDSRTQGMTYVSANRFTPYTGIVFDLTGNLSLYGSYSSLFVPQSQ
                     KDEHGSYLKPVTGNNLEAGIKGEWLEGRLNASAAVYRARKNNLATAAGRDLSGNTYYR
                     AANQAKTHGWEIEVGGRITPEWQIQAGYSQSKTRDQDGSRLNPDSVPERSFKLFTAYH
                     FAPEAPSGWTIGAGVRWQSETHTDPATLRIPNPAAKARAADNSRQKAYAVADIMARYR
                     FNPRAELSLNVDNLFNKHYRTQPDRHSYGALRTVNAAFTYRFK"
BASE COUNT          700 a         1016 c          727 g          434 t
ORIGIN      
        1 cacccgagtt tatgcggcaa acagcgaggc tacggcaacc cgtcccctct ccctgtggga
       61 gagggttagg gagagggcag taagccgcag gcttacatca aagccgataa cgcttccgtt
      121 acaactccgc ccactgaaag cagcctgcaa cgaagccaaa acgacaaacc gcatcgtaaa
      181 ccacccaacc cataggagaa ccccatgcaa aacgaaacca tcaacccgaa acagcacctt
      241 gccgccatca aagaatactg gcagcccgaa atcatcaacc gccacgggtt ccaattccgc
      301 ttggtcaaac ttttgggcga ttacggctgg catacgcacg gatacagcga caaagtgctg
      361 tttgccgtgg agggcgacat ggcggtggac ttcgccgacg gcggcagcat gacgatacgc
      421 gagggcgaga tggcggtcgt gccgaagtcg gtgtcgcacc gcccgcgttc ggaaaacggc
      481 tgctcgttgg tgctgattga gttgtccgac tcgtccgagg ccgtctgaaa acgaagtttc
      541 cgaaggaagc tgagtttctg cgaagctaaa agcagcctgc accttcaatc aatatgccga
      601 aaatacaacc ccaccgcaca ccaacacaca aaggaaatcc catgacacgc ttcaaatatt
      661 ccctgctgtt tgccgccctg ttgcccgtgt acgcgcaggc cgatgtttct gtttcagacg
      721 accccaaacc gcaggaaagc actgaattgc cgaccatcac cgttaccgcc gaccgcaccg
      781 cgagttccaa cgacggctac actgtttccg gcacgcacac cccgctcggg ctgcccatga
      841 ccctgcgcga aatcccgcag agcgtcagcg tcatcacatc gcaacaaatg cgcgaccaaa
      901 acatcaaaac gctcgaccgc gccctgttgc aggcgaccgg caccagccgc cagatttacg
      961 gctccgaccg cgcgggctac aactacctgt tcgcgcgcgg cagccgcatc gccaactacc
     1021 aaatcaacgg catccccgtt gccgacgcgc tggccgatac gggcaatgcc aacaccgccg
     1081 cctatgagcg cgtagaagtc gtgcgcggcg tggcggggct gctggacggc acgggcgagc
     1141 cttccgccac cgtcaatctg gtgcgcaaac gcccgacccg caagccattg tttgaagtcc
     1201 gcgccgaagc gggcaaccgc aaacatttcg ggctgggcgc ggacgtatcg ggcagcctga
     1261 acaccgaagg cacgctgcgc ggccgcctgg tttccacctt cggacgcggc gactcgtggc
     1321 ggcagcgcga acgcagccgc gatgccgaac tctacggcat tttggaatac gacatcgcac
     1381 cgcaaacccg cgtccacgca ggcatggact accagcaggc gaaagaaacc gccgacgcgc
     1441 cgctcagcta cgccgtgtac gacagccaag gttatgccac cgccttcggc ccgaaagaca
     1501 accccgccac aaattgggcg aacagccgcc accgtgcgct caacctgttt gccggcatcg
     1561 aacaccgctt caaccaagac tggaaactca aagccgaata cgactacacc cgcagccgct
     1621 tccgccagcc ctacggcgta gcaggcgtgc tttccatcga ccacaacacc gccgccaccg
     1681 acctgattcc cggttattgg cacgccgacc cgcgcaccca cagcgccagc gtgtcattga
     1741 tcggcaaata ccgcctgttc ggccgcgaac acgatttaat cgcgggtatc aacggttaca
     1801 aatacgccag caacaaatac ggcgaacgca gcatcatccc caacgccatt cccaacgcct
     1861 acgaattttc ccgcacgggc gcctatccgc agcctgcatc gtttgcccaa accatcccgc
     1921 aatacggcac caggcggcaa atcggcggct atctcgccac ccgtttccgc gccgccgaca
     1981 acctttcgtt gatactcggc ggcagataca gccgttaccg caccggcagc tacgacagcc
     2041 gcacacaagg catgacctat gtatccgcca accgtttcac cccctacaca ggcatcgtgt
     2101 tcgacctgac cggcaacctg tcgctttacg gctcgtacag cagcctgttc gtcccgcaat
     2161 cgcaaaaaga cgaacacggc agctacctga aacccgtaac cggcaacaat ctggaagccg
     2221 gcatcaaagg cgaatggctt gaaggccgtc tgaacgcatc cgccgccgtg taccgcgccc
     2281 gtaaaaacaa cctcgccacc gcagcaggac gcgacctgag cggcaacacc tactaccgcg
     2341 ccgccaacca agccaaaacc cacggctggg aaatcgaagt cggcggccgc atcactcccg
     2401 aatggcagat acaggcaggt tacagccaaa gcaaaacccg cgaccaagac ggcagccgcc
     2461 tgaaccccga cagcgtaccc gaacgcagct tcaaactctt cactgcctac cactttgccc
     2521 ccgaagcccc cagcggctgg accatcggcg caggcgtgcg ctggcagagc gaaacccaca
     2581 ccgaccctgc cacgctccgc atccccaacc ccgccgccaa agcccgcgcc gccgacaaca
     2641 gccgccaaaa agcctacgcc gtcgccgaca tcatggcgcg ttaccgcttc aatccgcgcg
     2701 ccgaactgtc gctgaacgtg gacaacctgt tcaacaaaca ctaccgcacc cagcctgacc
     2761 gccacagtta cggcgcactg cggacagtga acgcggcgtt tacctatcgg tttaaataag
     2821 gtcgtctgaa aacggagttt ctgcgaagct atagtggatt aacaaaaacc agtacgg
//
LOCUS       DAXIFD010000193         2751 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.193, whole genome shotgun sequence.
ACCESSION   DAXIFD010000193 DAXIFD010000000
VERSION     DAXIFD010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.193"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>2751
                     /gene="pilC"
                     /locus_tag="ACFOCN_001900"
     CDS             <1..>2751
                     /gene="pilC"
                     /locus_tag="ACFOCN_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6970990.1"
                     /translation="QTQTHKYAIVLNAQKLPEVKWGSSYTSLGHKDKDLQFTHTSNFG
                     IKKNIILSFNNTDEVVAEKKDAVVFGAATYLPPYGKVSGFDDKRLTERKNAVDWIGTT
                     KPGLVGYSYEDVTCNSSNCPEVSYKTQFTFDKHQLAKKKTDNKLDIYEDKSRDNSPIY
                     KLPDYPGLGVSFNLSGESTVKPKRLSQLVSSFSEDVTQQNGANSPYKDKNLVYTTDDY
                     RNQGNHNHQDKHHAIIFYLNAKLHLLDKKQIKNIAQGKTFNLGTLKPRIDLTEAWKNR
                     NGGFFNNGNWTFEDKGEVSVKLSLPQVKAGRCVNKDNPNKNTKTSSPALTAPALWFGP
                     VQNGKAQMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRYSLADLSASDIQSKEPTF
                     TSRQTVIRLDGGVQQIKLSRNNDEVVNFNVNNGNNTFGIVKDLGVDPDASEWKKVLLP
                     WTVRASNDDNQFKTINQQLNQQKIQYSQRYRIRENGNNSKRDLGDIVNSPIVAVGEYL
                     ATSANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRKDIENKDSTLAKELRTFAEKGY
                     VGDRYGVDGGFVLRQVELSGQKHVFMFGAMGFGGRGAYALDLTKADGNDPTKASLFDV
                     KDNGNNGNNGNNSVQLGYTVGTPQIGKTHNGKYAAFLASGYATKTIDDQQNKTALYVY
                     DLESSGTLIKKIDVPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGKMYRFDLSSQSPD
                     QWTVRPIFEGTKPITSAPAVSKLKDKRVVIFGTGSDLSEEDVDKMDEQYIYGIFDDDT
                     AATGTVNFTGTGGGLLEQHLTEENKTLFLTDYKRSDGSGSKGWVVKLKDGQRVTVKPT
                     VVLRTAFVTIRKYNDGGCGAQTAILGINTADGGKLTKKSARPIVPADNTAVAQYSGHK
                     KG"
BASE COUNT          835 a          680 c          668 g          568 t
ORIGIN      
        1 cgcaaacgca aacgcataaa tacgctattg tactgaacgc gcaaaagctg cccgaggtaa
       61 agtgggggag ttcatataca tcattggggc acaaagacaa ggacctccaa tttacccata
      121 cgagtaattt cggaatcaaa aaaaacatta ttttatcatt taataatacc gatgaagttg
      181 ttgctgaaaa aaaagatgct gtcgtttttg gtgcagccac ctacctgccg ccctacggca
      241 aggtttccgg ttttgatgac aaaaggctga ccgagcgcaa aaatgccgtt gattggattg
      301 gtacgaccaa accggggctg gtaggctaca gctacgaaga tgtcacatgc aacagcagca
      361 actgtcctga agttagctat aaaacccaat ttacctttga taaacaccag ttggcaaaaa
      421 agaaaacaga caacaagctg gatatatacg aagacaaaag ccgcgacaat tcgcccattt
      481 acaaattgcc ggattatcct gggttgggcg tgtctttcaa tttgagcggc gagagcaccg
      541 ttaaaccaaa gagactcagt caattggtat cttcttttag cgaggacgtg acgcagcaaa
      601 atggtgcgaa cagcccatac aaagacaaaa acctcgttta tacgacagac gattaccgta
      661 atcagggtaa tcataaccat caggacaaac accacgccat catcttttat ctaaacgcca
      721 aactgcacct gctggataaa aaacaaatca aaaatatcgc gcaaggcaaa acatttaatt
      781 tgggtacctt gaaaccgcgc atcgatctga cggaagcgtg gaaaaacagg aatgggggct
      841 tttttaataa tggtaattgg acgtttgaag ataaaggaga agtcagcgtc aaactcagcc
      901 tgccgcaagt caaagcaggc cgctgcgtca acaaagataa ccccaataag aataccaaaa
      961 cctcttcccc cgcactgact gcccccgcgc tgtggttcgg acctgtgcaa aatggtaagg
     1021 cgcagatgta ttccgcttcg gtttctacct accccgacag ttcgagcagc cgcatcttcc
     1081 ttcaaaatct gaaaagaaaa aacgacccca acaaacccgg ccgctattcc ctcgcagact
     1141 tgagtgcgtc ggatattcaa agtaaagagc cgactttcac aagtcggcaa accgtcatcc
     1201 gattggatgg cggcgtacag cagatcaaac tgagtagaaa caatgatgag gtcgtcaatt
     1261 ttaatgtaaa caacggcaac aacactttcg gcattgttaa ggacttgggc gtcgatcctg
     1321 atgccagcga gtggaaaaaa gtgctgctgc cttggacggt tcgtgcttcc aatgatgaca
     1381 atcaatttaa aacaattaac caacaactta accaacaaaa aatccaatac agccaaagat
     1441 accgcatccg cgaaaacggc aacaatagca agcgtgattt gggcgacatc gtcaacagcc
     1501 ccatcgtggc ggtcggcgag tatttggcta cttccgccaa cgacgggatg gtgcatatct
     1561 tcaaaaaaaa cggcggcagt gatgaacgca gctacaatct gaagctcagc tacatccccg
     1621 gcacgatgcc gcgcaaggat attgaaaaca aagactccac cctcgccaaa gagctgcgca
     1681 cctttgccga aaaaggctat gtgggcgacc gctacggcgt ggacggcggc tttgtcttgc
     1741 gccaagtcga actgagcggg caaaaacacg tgtttatgtt cggcgcgatg ggctttggcg
     1801 gcagaggtgc gtatgccttg gatttgacca aagccgacgg caatgacccg acaaaagcct
     1861 ctttgtttga tgtaaaagat aacggcaata atggcaataa cggcaataat agcgtgcaat
     1921 taggctacac cgtcggcacg ccgcaaatcg gcaaaaccca caacggcaaa tacgccgctt
     1981 tcctcgcctc cggttatgcg actaaaacca ttgacgacca acaaaataaa accgcgctgt
     2041 atgtgtatga tttggaaagc agcggtacgc tgattaaaaa aatcgatgta cccggcggca
     2101 agggcgggct ttcgtccccc acgctggtgg ataaagattt ggacggcacg gtcgatatcg
     2161 cctatgccgg cgatcgcggc gggaaaatgt accgctttga tttgagcagt caaagtcctg
     2221 atcaatggac tgtacgccct atttttgaag gcacaaaacc gattacttcc gcgcccgccg
     2281 tttccaaact gaaagacaaa cgcgtggtta tcttcggtac gggcagtgat ttgagtgagg
     2341 aggatgtgga caaaatggac gaacaatata tttacggtat cttcgacgac gatacagcgg
     2401 cgacgggtac tgtaaacttc accggtacgg gaggcgggct gctcgagcaa caccttactg
     2461 aggaaaataa aaccttattc ctgaccgatt ataagcgatc cgacggctcg ggcagcaaag
     2521 ggtgggtagt gaaattgaag gacggacagc gcgttaccgt caaaccgacc gtggtattgc
     2581 gtaccgcctt tgtaaccatc cgcaaatata acgacggcgg ctgcggcgcg caaaccgcca
     2641 ttttgggcat caataccgcc gacggcggca agctgaccaa gaaaagcgcg cgcccgattg
     2701 tgccggccga caatacggct gtcgcgcaat attccggtca taagaaaggc a
//
LOCUS       DAXIFD010000194         2704 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.194, whole genome shotgun sequence.
ACCESSION   DAXIFD010000194 DAXIFD010000000
VERSION     DAXIFD010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.194"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>2704
                     /gene="pilC"
                     /locus_tag="ACFOCN_001901"
     CDS             <1..>2704
                     /gene="pilC"
                     /locus_tag="ACFOCN_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6970991.1"
                     /translation="ETHNYAIVMNEQNQLKVKQKDSYSTLREKDRERKFIYNKGWQGG
                     GSVLFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDANALKERNNAVDWIHTTRAGL
                     AGYAYTNVICRSHQCPQLVYKTRFSFDNPDLAKRGGGLDRHTEPSRDNSLIYKLKDHP
                     WLGVSFNLGSENTVKNSQSSSRLISSFSEDNNNQTIVSTTENHPISLGDGQREHTAVA
                     YYLNAKLHLLDKKGIKDITGKTVRLGVLKPSIDVKTQRTGLGGLLGFHAKWDIKDTGQ
                     IPVELGLPQIKAGRCINKPNPNPKAQALSPALTAPALWFGPVQNGKVQMYSASVSTYP
                     DSSSSQIFLQNLSRKDDTSKPGRYSLKPLSTSEIKSKEPTFTGRQTVIRLDGGVQQIK
                     LQGNEVTSFNVNNGNNTFGIVKDLGVDPDASEWKKVLLPWTVRASNDDNQFKTINQQL
                     NQQKIQYSQRYRIRDNGNRDLGDIVNSPIVAVGEYLATSANDGMVHIFKQSGGDKRSY
                     NLKLSYIPGTMPRQYFDNDTSALKDSTLAKELRTFAEKGYVGDRYGVDGGFVLRKVER
                     NGKDHVFMFGAMGFGGRGAYALDLTKADGSDPTAVSLFDVKNDNNGKNSNNSNNSVEL
                     GYTVGTPQIGKTHNGKYAAFLASGYATKDINNGDNKTALYVYDLESSGTLIKKIEVPN
                     SKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSGQDPNQWSVRTIFSGNKPITS
                     APAISQLKDKRVVIFGTGSDLSEEDVLSTDEQHIYGIFDDDTATTGSVNFSGLGGGLL
                     EQELKQEGKTLFLTDYKRSDGSGNKGWVVKLKEGQRVTVKPTVVLRTAFVTIHKYTGT
                     DKCGAETAILGINTADGGKLTKKSARPIVPEANTAVAQYSGHKQT"
BASE COUNT          760 a          709 c          678 g          557 t
ORIGIN      
        1 gaaacccata actacgctat tgtcatgaac gaacaaaatc agctgaaggt aaagcagaag
       61 gattcatatt caaccttaag ggaaaaagac agggaacgca aatttatcta taataaaggc
      121 tggcagggtg gaggctctgt cttgttcgac aataccgata cccttgtttc ccgacaaagc
      181 ggtactgccg tttttggcac agccacctac ctgccgccct acggcaaggt ttccggtttt
      241 gatgccaacg ctctgaaaga gcgcaacaat gccgtcgatt ggattcatac cacccgggcc
      301 gggctggcag gctacgccta caccaacgtc atatgcagaa gccaccaatg cccccaactt
      361 gtctataaaa cccgattttc cttcgataat cccgacttgg caaaaagagg aggcgggctg
      421 gataggcaca cagagccaag ccgcgacaat tcgctcattt acaaattgaa ggatcatcca
      481 tggttgggcg tatctttcaa tttgggcagc gagaataccg tcaaaaatag ccaatcatcc
      541 agcagattga tatcttcttt tagtgaagac aataataatc aaaccatcgt ctctacgaca
      601 gaaaaccacc ctatttccct tggcgacggg cagcgcgaac ataccgccgt ggcctattat
      661 ctgaacgcca aactgcacct gctggataaa aaagggatta aagatatcac cggcaaaaca
      721 gtgcggttgg gtgtcttgaa gccgagcatc gatgtgaaga cacaaaggac ggggcttggc
      781 ggcttgctag gttttcatgc taagtgggac attaaagata ccgggcagat tccggtcgag
      841 ctcggcctgc cgcaaatcaa agcaggccgc tgcatcaaca aaccgaaccc caatcccaaa
      901 gcccaagccc tttcgccggc actgactgcc cccgcgctgt ggttcggacc tgtgcaaaat
      961 ggcaaggtgc agatgtattc cgcttcggtt tccacctacc ccgacagttc gagcagccaa
     1021 attttcctgc aaaacctttc ccgcaaggat gacacaagca aaccgggccg ctattccctc
     1081 aaacccttga gtacgtcgga gattaaaagt aaagagccga ctttcacagg gcggcaaacc
     1141 gtcatccgat tggatggcgg cgtacagcag attaaacttc aaggcaatga ggtcactagt
     1201 tttaatgtaa acaacggcaa caacactttc ggcattgtta aggacttggg cgtcgatcct
     1261 gatgccagcg agtggaaaaa agtgctgctg ccttggacgg ttcgtgcttc caatgatgac
     1321 aatcaattta aaacaattaa ccaacaactt aaccaacaaa aaatccaata cagccaaaga
     1381 taccgcatcc gcgacaacgg caatcgcgat ttgggcgaca tcgtcaacag ccccatcgtg
     1441 gcggtcggcg agtatttggc tacttccgcc aacgacggga tggtgcatat cttcaaacaa
     1501 agcggcgggg acaagcgcag ctacaatctg aagctcagct acatccccgg cacgatgccg
     1561 cgccaatatt ttgataacga cacttccgct ctcaaagact ccaccctcgc caaagagctg
     1621 cgcacctttg ccgaaaaagg ctatgtgggc gaccgctacg gcgtggacgg cggctttgtc
     1681 ttgcgcaaag tcgaacggaa cgggaaagac catgtgttta tgttcggcgc gatgggcttt
     1741 ggcggcagag gtgcatacgc cttggatttg accaaagccg acggcagtga cccgaccgcc
     1801 gtttccctgt ttgatgtcaa aaatgacaat aatggcaaga atagcaataa tagcaataat
     1861 agcgtggaat taggctacac cgtcggcacg ccgcaaatcg gcaaaaccca caacggcaaa
     1921 tacgccgcct tcctcgcctc cggttatgcg actaaagaca ttaacaacgg cgacaataaa
     1981 accgcgctgt atgtatatga tttggaaagc agcggcacgc tgattaaaaa aatcgaagta
     2041 cccaacagca agggcgggct ttcgtccccc acgctggtgg ataaagattt ggacggcatt
     2101 gtcgatatcg cctatgccgg cgatcgcggc gggaatatgt accgctttga tttgagcggt
     2161 caagatccta atcaatggtc tgtacgcacc attttcagcg gcaacaaacc gattacttcc
     2221 gcgcccgcca tttcccaact gaaagacaaa cgcgtggtta tcttcggtac gggcagtgat
     2281 ttgagtgagg aggatgtact cagtacggat gaacaacata tttacggtat cttcgacgac
     2341 gatacggcga cgacgggtag tgtaaacttc agcggtttgg gaggcgggct gctcgagcaa
     2401 gagcttaagc aggagggtaa aaccttattc ctgaccgatt ataagcgatc cgacggctcg
     2461 ggcaataagg ggtgggtagt gaagctgaag gaaggacagc gcgttaccgt caaaccgacc
     2521 gtggtattgc gtaccgcctt tgtaaccatc cataaatata cgggtacgga caaatgcggc
     2581 gcggaaaccg ccattttggg catcaatacc gccgacggcg gcaagctgac caagaaaagc
     2641 gcgcgcccga ttgtgccaga agccaatacg gctgtcgcgc aatattccgg ccataagcaa
     2701 accg
//
LOCUS       DAXIFD010000195         2577 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.195, whole genome shotgun sequence.
ACCESSION   DAXIFD010000195 DAXIFD010000000
VERSION     DAXIFD010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.195"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(68..874)
                     /locus_tag="ACFOCN_001902"
     CDS             complement(68..874)
                     /locus_tag="ACFOCN_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HFC6970992.1"
                     /translation="MPTVFIFLTAVYAGLGAFAWHCQQQGRGRDYPWKTELPVLGAAL
                     TVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAAL
                     MLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRSF
                     SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGIL
                     SWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR"
     gene            1094..2464
                     /gene="ffh"
                     /locus_tag="ACFOCN_001903"
     CDS             1094..2464
                     /gene="ffh"
                     /locus_tag="ACFOCN_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HFC6970993.1"
                     /translation="MLDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVA
                     LPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAV
                     VLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFF
                     PSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETL
                     FVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVG
                     EKINGLEPFHPDRLASRILGMGDVLTLIEDVQKGIDEEAAAKMAKKLQKGKGFDLNDF
                     KEQIQQMRNMGGLENLMSKMPGELGQISKQIPEGTAEKAMGKVEAIINSMTPKERANP
                     ALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMKMFSGNGLGKLMRMAKGMKGMK
                     GMFPGL"
BASE COUNT          709 a          650 c          675 g          543 t
ORIGIN      
        1 ggctggtgcg cctttgtgaa tatgccgtct gaaactcggg gactcagacg gcatctgttg
       61 gctcttctta tcttttcaga atgatttcca atacgaactt gctgcccata taggcaatca
      121 taaggctgac aaatccgatg atggtccaca cggcggcttt tttaccgcgc catgcggtca
      181 tgctgtgctt gagcagcagt ccgccgtaaa tcagccatga caatatgccg aatacggttt
      241 tatgggtaaa ggtcatgggt ttgccgaata cggcttcggc gaagaatgtg ccgctgacga
      301 cggaataggt cagcaggatg aaacctgccc acatggcctg gaacatgagt ttttccaaac
      361 tgagcagcga cggcaggaat cctgcgagct tggagaagct cctgcggtgc aggctccgat
      421 tcagcagcag ggtcaaaacg gacaataatg ttgcgatgcc gaacagcccg tatgcaagca
      481 gcgaagttcc gatatgcagc ataaagggaa ggtcggtaat ttcatatccc gagaattttc
      541 caggaaaaac caaacctgac agcagcatca gtgcggcgca aggatacagc agcaactgca
      601 ctccgcgcag cggataaaag aagctgccgg caaaataaat aaacagcatc atccaaacaa
      661 tcaggctgcc ggaatacccg aagcccataa tgatgatttt gtcttgaatg accggcataa
      721 gcagtgccgc gccgtggacg gtcaatgccg cgcccaaaac cggcaattcc gtcttccacg
      781 ggtaatcccg gccgcgcccc tgctgttggc agtgccatgc aaatgcaccc aatcctgcgt
      841 aaaccgccgt caaaaagatg aaaactgtcg gcatggtgga ctttctctat ctatactgtt
      901 gcgccgtctg cggccgctta tgaaatattg gaacttttaa cgttggaatt gtaaaatccc
      961 cgtttcgggc aagccttgac ggatttgccg atatgctgtc cggcacacaa gccgcatcaa
     1021 attattttga ttttatttta acaaagaatg cccctgatgg ggcaagctat tcttattcag
     1081 accaaggacc agtatgttag acaatttaac cggccgcttc agcaatgtct tcaaaaacat
     1141 ccgggggcag gccaaactga ccgaagacaa tattaaagag gccttgcgcg aagtccgcct
     1201 cgccctgctt gaggcggatg tcgccctgcc tgtcgtcaaa gagttcgtca acaacgtcaa
     1261 agaaaaggcc ctcggtcagg aagtggctgg cagcctgacg ccggatcagg catttatcgg
     1321 cgtggtcaac aaagccctga ccgaactgat gggcagggaa aacaaaacgc tggatttgtc
     1381 ggttgcgccg cccgccgtcg tgttgatggc aggtttgcag ggcgcgggca agacgacgac
     1441 cgccggcaaa ctcgcccgcc tgctgaaaaa cgatcagaag aaaaaggttt tggtcgtatc
     1501 tgccgacgtt taccgccctg ccgcgattga acaactgcgc ctgttggccg aacaggtcgg
     1561 cgtggacttt ttcccatccg ataccaacca aaaaccggtt gaaattgcaa ctgccgccgt
     1621 cgattacgcc aaaaaacatt tttacgatgt tttgatggtc gataccgccg gccgtctggc
     1681 aatcgatgaa gagatgatga acgaaatcaa agcccttcac gcggcggtta acccggtgga
     1741 aactttgttc gtcatcgatg cgatgctggg tcaggatgcg gtgaacactg ctcaggcatt
     1801 taatgaagcc ctgccgctga ccggagtcgt attgaccaag atggacggcg actcgcgcgg
     1861 cggtgcggca ttgtccgtac gccatgtaac cggcaaaccg attaaattta tcggtgtcgg
     1921 cgaaaaaatc aacggcctcg aacctttcca ccccgaccgt cttgccagcc gtatcctcgg
     1981 catgggcgac gtattgaccc tgattgaaga cgttcaaaaa ggtattgatg aagaagccgc
     2041 cgccaaaatg gcgaaaaagc tgcaaaaagg caaaggcttc gacctcaacg actttaaaga
     2101 acaaatccag caaatgcgca atatgggcgg tttggaaaac ctgatgtcga aaatgccggg
     2161 cgaactgggt caaatatcga aacaaatccc cgaaggtacg gctgaaaaag cgatgggtaa
     2221 agtagaagcc atcatcaact cgatgacccc taaagaacgc gccaaccctg ccctgctcaa
     2281 agccagccgc aaacgccgta ttgcaatggg tgcgggcacg accgtacagg aagtgaacaa
     2341 attgctcaaa cagtttgaac aaatgcaaca aatgatgaag atgttcagcg gcaacggctt
     2401 gggcaaactg atgcgtatgg cgaaaggaat gaagggaatg aaaggaatgt tcccgggttt
     2461 gtaagccgat ttgaccgaaa acgccgtcta aaatttcaga cggcgttttt gttttatatt
     2521 ctgatttata gtggattaac aaaaatcagg acaaggcggc gagccgcaga cagtaca
//
LOCUS       DAXIFD010000196         2574 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.196, whole genome shotgun sequence.
ACCESSION   DAXIFD010000196 DAXIFD010000000
VERSION     DAXIFD010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.196"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            369..2510
                     /gene="fetA"
                     /locus_tag="ACFOCN_001904"
                     /gene_synonym="frpB"
     CDS             369..2510
                     /gene="fetA"
                     /locus_tag="ACFOCN_001904"
                     /gene_synonym="frpB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021438799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor FetA/FrpB"
                     /protein_id="HFC6970994.1"
                     /translation="MNAPFFRLSLLSLTLAAGFAHAAENNAKVVLDTITVKGDRQGSK
                     IRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQFLTLRGMGQNSVDIKVDNA
                     YSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLD
                     KNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYNRNDEKDYEAGKGFRNDNGGKT
                     VPYSALDKRSYLAKIGTSFGDDDHRIVLSHMKDQHRGIRTVREEFAVSEKNSRITIKR
                     QAPAYRETTQSNTNLAYTGKDLGFVEKLDANAYVLEKKRYSADDKDNGYAGNVKGPNH
                     TRITTRGMNFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSQFKIEDKTGATPAEIQK
                     NRADEATAHDYKLSNPTKTDTGAYIEAIHEIDGFTLTGGLRYDRFKVKTHDGKTVSSS
                     NLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGKRGIISIADGTKAERARNT
                     EIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVAVREAVNAGYIKNHGYELGASY
                     RTGGLTAKVGVSHSKPRFYDTHKDKLLSANPEFGAQVGRTWTASLAYRFKNPNLEIGW
                     RGRYVQKATGSILAAGQKNRDKQLENVVRKGFGVNDVFANWKPLGKDTLNVNLSVNNV
                     FNTFYYPHSQRWTNTLPGVGRDVRLGVNYKF"
BASE COUNT          736 a          744 c          570 g          524 t
ORIGIN      
        1 tagattcccg ctttcgcggg aatgacgcgg aaaggttgct tttcgtcatt cccgcatttg
       61 ttaatccact atatttccgc cgttttttat agtggactaa caaaaaccag tacagcgttg
      121 cctcgccttg ccgtactatc tgtactgtct gcggcttcgt cgccttatcc tgatttttgt
      181 tagtccacta tacatttccg acaaaacctg tcaacaaaaa acaacacttc gcaaataaaa
      241 acgataatca gctttacaca aatcccccct ctcgttaata taaacaaaaa taattattat
      301 ttttcttatc ctgccaaacc ttaacggttt ggatttactt cccttcatac actcaaaagg
      361 acgaacaaat gaacgccccg tttttccgcc tcagcctgct ctcgcttacc ctggcggcag
      421 gttttgccca tgcggcagaa aataatgcca aggtcgtact ggataccatt accgtaaaag
      481 gcgaccgcca aggcagcaaa atccgtacca acatcgttac gcttcaacaa aaagacgaaa
      541 gcaccgcaac cgatatgcgc gaactcttaa aagaagagcc ctccatcgat ttcggcggcg
      601 gcaacggcac gtcccaattc ctgacgctgc gcggcatggg tcagaactct gtcgacatca
      661 aggtggacaa cgcctattcc gacagccaaa tcctttacca ccaaggcaga tttattgtcg
      721 atcccgcttt ggttaaagtc gtttccgtac aaaaaggcgc gggttccgcc tctgccggta
      781 tcggcgcgac caacggcgcg attatcgcca aaaccgtcga tgcccaagac ctgctcaaag
      841 gcttggataa aaactggggc gtgcgcctca acagcggctt tgccagcaac gaaggcgtaa
      901 gctacggcgc aagcgtattc ggaaaagagg gcaacttcga cggtttgttc tcttacaacc
      961 gcaacgatga aaaagattac gaagccggca aaggtttccg caatgacaac ggcggcaaaa
     1021 ccgtaccgta cagcgcgctg gacaaacgca gctacctcgc caaaatcgga acaagcttcg
     1081 gcgacgacga ccaccgcatc gtattgagcc acatgaaaga ccaacaccga ggcatccgca
     1141 ctgtgcgtga agagtttgcc gtcagcgaaa aaaattcacg gataactatt aaacgccaag
     1201 cccctgctta ccgcgaaacc actcaatcca acaccaactt ggcgtacacc ggcaaagatt
     1261 tgggctttgt cgaaaaactg gatgccaacg cctatgtgtt ggaaaagaaa cgctattccg
     1321 ccgatgacaa agataacggc tacgcaggca atgtaaaagg ccctaaccat acccgaatca
     1381 ccactcgagg tatgaatttc aacttcgaca gccgccttgc cgaacaaacc ctgttgaaat
     1441 acggtatcaa ctaccgccat caggaaatca aaccgcaagc gtttttgaat tcgcaattta
     1501 aaattgaaga taaaactggt gcaaccccgg cagaaataca aaaaaaccgt gcagatgaag
     1561 ccactgctca cgactacaaa ctgtccaacc caaccaaaac cgataccggc gcgtatatcg
     1621 aagccattca cgagattgac ggctttaccc tgaccggcgg gctgcgttac gaccgcttca
     1681 aggtgaaaac ccatgacggc aaaaccgttt caagcagcaa ccttaacccg agtttcggtg
     1741 tgatttggca gccgcacgaa cactggagct tcagcgcgag ccacaactac gccagccgca
     1801 gcccgcgcct gtatgacgcg ctgcaaaccc acggtaaacg cggcatcatc tcgattgccg
     1861 acggcacgaa agccgaacgc gcgcgcaata ccgaaatcgg cttcaactac aacgacggca
     1921 cgtttgccgc caacggcagc tacttctggc agaccatcaa agacgcgctt gccaatccgc
     1981 aaaaccgcca cgactctgtc gccgtccgtg aagccgtcaa cgccggctac atcaaaaacc
     2041 acggttacga attgggcgcg tcttaccgca ccggcggtct gactgccaaa gtcggcgtaa
     2101 gccacagcaa accgcgcttt tacgatacgc acaaagacaa gctgttgagc gcgaatcctg
     2161 aatttggcgc acaagtcggc cgcacttgga cagcctccct tgcctaccgc ttcaaaaacc
     2221 cgaatctgga aatcggctgg cgcggccgtt atgttcaaaa agctacgggt tcgatattgg
     2281 cagcaggtca aaaaaaccgc gacaaacaat tggaaaacgt tgtacgcaaa ggtttcggtg
     2341 tgaacgatgt cttcgccaac tggaaaccgc tgggcaaaga cacgctcaat gtcaatcttt
     2401 cagtcaacaa cgtgtttaac acgttctact atccgcacag ccaacgctgg accaataccc
     2461 tgccgggcgt gggacgtgat gtacgcttgg gcgtgaacta caagttctaa aacgcacatc
     2521 ccgaaaaaat gccgtctgaa agcctttcag acggcatctg ttctgataat ttga
//
LOCUS       DAXIFD010000197         2505 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.197, whole genome shotgun sequence.
ACCESSION   DAXIFD010000197 DAXIFD010000000
VERSION     DAXIFD010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.197"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            169..792
                     /gene="lolA"
                     /locus_tag="ACFOCN_001905"
     CDS             169..792
                     /gene="lolA"
                     /locus_tag="ACFOCN_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HFC6970995.1"
                     /translation="MMKPHNLFQFLAVCSLTVAVASAQAGAVDALKQFNNDADGISGS
                     FTQTVQSKKKTQTAHGTFKILRPGLFKWEYTKPYRQTIVGDGQTVWLYDVDLAQVTKS
                     SQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKG
                     GNLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTPPKGVDVLSN"
     gene            1065..2204
                     /locus_tag="ACFOCN_001906"
     CDS             1065..2204
                     /locus_tag="ACFOCN_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6970996.1"
                     /translation="MKKTLVAAAILSLALTACGGGSDTAAQTPSAKPEAEQSGKLNIY
                     NWSDYVDPETVAAFEQETGIKTRSDYYDSNETLEAKVLTGKSGYDLTAPSIANVGRQI
                     KAGAYQKIDKAQIPHYGNIDKDLLKMMEAVDPGNEYAVPYFWGINTLAINTRQVQKAL
                     GTDKLPENEWDLVFNPEYTAKLKSCGISYFDSAIEQIPLALHYLGKDPNSENPEDIKA
                     AVDMMKAVRGDVKRFSSSGYIDDMAAGNLCAAIGYGGDLNIAKTRAEEAANGVEIKVL
                     TPKTGVGVWVDSFMIPRDAQNVANAHRYIDYTLRPEVAAKNGSFVTYAPASRPARELM
                     DEKYTSDASIFPNKELMEKSFIVSPKSAESAKLSVKLWQGLKAGK"
     gene            2338..>2505
                     /locus_tag="ACFOCN_001907"
     CDS             2338..>2505
                     /locus_tag="ACFOCN_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6970997.1"
                     /translation="MNLSIVVPIYNVESYLEACLSSIEPILSNENVELILVNDGSKDG
                     SEDICYKYIDKI"
BASE COUNT          683 a          732 c          619 g          471 t
ORIGIN      
        1 cgcggcacac attaaagggc agcgtggcgc gcctgccttt tccggtgggc aaaaaatcgg
       61 ccctcggaaa acgctgtttg taaaatgcaa accgcccgta acgccgcccg tatgattgtt
      121 ttgccgcgcc gatactttac gccacactca tcccgacaag gaaaaataat gatgaaaccg
      181 cacaacctgt tccaattcct cgccgtttgc tccctgaccg tcgccgtcgc ttccgcacag
      241 gcgggcgcgg tagacgcgct taagcaattc aacaacgatg ccgacggtat cagcggcagc
      301 ttcacccaaa ccgtccaaag caaaaagaaa acacaaaccg cgcacggcac gttcaaaatc
      361 ctgcgaccgg gccttttcaa atgggaatac accaaacctt acaggcaaac catcgtcggc
      421 gacggtcaaa ccgtttggct ctacgatgtt gatctggcac aagtgaccaa gtcgtcccaa
      481 gaccaggcca taggcggcag ccccgccgcc atcctgtcga acaaaaccgc cctcgaaagc
      541 agctacacgc tgaaagagga cggttcgtcc aacggcatcg attatgtgct ggcaacgccc
      601 aaacgcaaca acgccggcta ccaatacatc cgcatcggct tcaaaggcgg caacctcgcc
      661 gccatgcagc ttaaagacag cttcggcaac caaacctcca tcagtttcgg cggtttgaat
      721 accaatcccc aactctcgcg cggcgcgttc aagtttaccc cgcccaaagg cgtggacgtg
      781 ttgagcaact gatgccgtcc gccccgatgc cgtctgaaag ccgccgaggc ttcagacggc
      841 attttcacgc aggcggaaca atgtcccgca ttaccgcccg atcgggcatc ggaacggcaa
      901 acccgtgaaa attaacggtt gcgccccggt tgtttttgcc gtttaatgca aaccttgctg
      961 catcaagggc caagaaagcc gaccggccgc ccccacagct tccgatgcag gcggccaggc
     1021 cgtccctgca atgtttttta tttttgaacg aaaggtcgaa aaccatgaaa aaaacactgg
     1081 tggcggcggc aatcctgagc ctcgccttga ctgcgtgcgg cggcggaagc gataccgccg
     1141 cccaaacccc ctccgccaag cccgaagccg aacaatcggg caaactcaat atctacaact
     1201 ggtcggatta tgtcgatccc gaaaccgtcg ccgcctttga acaagaaacc ggcatcaaga
     1261 cgcgttccga ttattacgac agcaacgaaa cactggaggc aaaagtcctg accggcaaat
     1321 ccggctacga cctgaccgcg ccgtccatcg ccaacgtcgg ccggcaaatc aaagcgggcg
     1381 cgtatcagaa aatcgacaag gcgcaaatcc cccattacgg caacatcgat aaagatttgc
     1441 tgaaaatgat ggaagccgtc gatccgggca acgaatacgc cgtcccctat ttctggggca
     1501 tcaacacctt ggcaatcaac acgcggcagg tgcaaaaggc attgggtacg gacaagctgc
     1561 ccgaaaacga atgggatttg gtgttcaacc ccgaatacac cgccaaactc aaatcctgcg
     1621 gcatcagcta tttcgacagc gcaatcgaac agattccctt ggcgttgcac tatttgggca
     1681 aagaccccaa cagtgaaaat cccgaagaca tcaaagccgc cgtcgatatg atgaaagccg
     1741 tccgaggcga cgtgaaacgc ttcagctctt ccggctatat cgacgatatg gcggcgggca
     1801 acctgtgtgc cgccatcggt tacggcggcg atttgaacat tgccaaaacc cgtgccgaag
     1861 aagccgcaaa cggcgtggaa atcaaagtat tgaccccgaa aaccggcgtg ggcgtgtggg
     1921 tggattcctt tatgattccg cgcgacgcgc aaaacgtcgc caacgcccac cgctatatcg
     1981 actacacgct ccggcccgag gtggcggcga aaaacggcag cttcgttacc tacgcgcccg
     2041 ccagccgtcc cgcgcgcgag ctgatggatg aaaaatacac ctccgacgca tcgattttcc
     2101 cgaacaaaga actgatggaa aaaagtttca tcgtatcgcc caaatccgca gaatccgcca
     2161 aactgagcgt gaagctgtgg caagggctca aggccggaaa ataaccgcaa cccctgccgt
     2221 ctgaaacctt tcgggcggca ggaaacggcg cgtccgttat caaacagggg gggcgtttcc
     2281 cctcctgccg gttatgattg ggttaagatt aaaatgattt agtaaaatga gaaagatatg
     2341 aatttaagta tcgtagttcc catttataat gtcgaaagtt atttggaagc gtgtttaagt
     2401 tccatagaac ctatattaag taatgaaaat gtcgaactta tccttgtgaa tgacgggtca
     2461 aaagacggaa gtgaagatat atgttataaa tatatagata aaata
//
LOCUS       DAXIFD010000198         2497 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.198, whole genome shotgun sequence.
ACCESSION   DAXIFD010000198 DAXIFD010000000
VERSION     DAXIFD010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.198"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            466..541
                     /locus_tag="ACFOCN_001908"
     tRNA            466..541
                     /locus_tag="ACFOCN_001908"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:500..502,aa:Glu,seq:ttc)
     gene            926..1091
                     /locus_tag="ACFOCN_001909"
                     /pseudo
     CDS             926..1091
                     /locus_tag="ACFOCN_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
     gene            complement(1141..1947)
                     /gene="thiD"
                     /locus_tag="ACFOCN_001910"
     CDS             complement(1141..1947)
                     /gene="thiD"
                     /locus_tag="ACFOCN_001910"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HFC6970998.1"
                     /translation="MKSSFVQTLTIAGSDSGGGAGIQADLKTFQMRGVFGTCVITAVT
                     AQNTLGVSAVHLVPTETITAQIQAIREDFDIRAYKIGMLGTAEIIECVADKLKHCDFG
                     RRVLDPVMIAKGGAPLLQDSAVAALTRLLLPDTDVLTPNLPEAEALTGVHIENRKDAE
                     RAAKILLDYGVKNVVIKGGHLNGSTSGRCTDWLFTQNETLELDSPRFPTAHTHGTGCT
                     FSACITAELAKGSDVCKAVRTAKSYITAAISNPLEIGAGHGPVNHWAYRD"
     gene            2391..>2497
                     /locus_tag="ACFOCN_001911"
     CDS             2391..>2497
                     /locus_tag="ACFOCN_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6970999.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIE"
BASE COUNT          603 a          642 c          632 g          620 t
ORIGIN      
        1 aagttgcact tcaaatgcga atccgccatt atctgaaagt ttgaggttct agattcccgc
       61 tttcgcggga atgacgaaaa gtggcgggaa tgacgaagtt tcagacggca tcgcccgcct
      121 gttttgatat ggcggcaccc cccccccgac aaaaaaaaac aatccggaac gcatctgacc
      181 gttccggctt gttttcaggc gaatccgccg catcagaaca tactgcgcac gcccatattg
      241 acctgccaag tctggcgcat cgtgtgcatc gaagaccttt gcgcctcaaa ataaagctgc
      301 cttccgttgt cggcattacc acgcaaaaaa atgaattgct tgatattcca atgtttttta
      361 tatgttttta tattgtgatg cgatcagaca aacgcccccc tgacatttgt ttagacggca
      421 tcgtattgct aaatttctat aagtatgtat aatgtccgtt tccacgcgcc catcgtctag
      481 aggcctagga cactgccctt tcacggcggc aaccggggtt cgaatccccg tgggcgtgcc
      541 aattcaaaaa cctgcttgtt tcaagcaggt ttttttatta tgaatcgtca ttcccgcacc
      601 cttcgtcatt cccgcgaaag cgggaatctg gagcgcagga ttaaagaaac cgttttatcc
      661 gataagcttc cgtgccgaca ggtctggatt cccgcctacg cgggaaggac ggcagagggt
      721 ggacgatgcc gtctaaagcc tgacaaggca tttgatgccg tctgaaactt cgtcattccc
      781 gcacccttcg tcattcccgc aaaagcggga atctagagcg tagggttgaa gaaaccgttt
      841 tatccaataa gtttccgtgc cgacaggtct ggattcccac tttcgtggga atgacgagtc
      901 ttttataacc tgagaccttt gcaaaatgcc tttccctttt aaatttaaag aggggggagc
      961 tgaaggatta ttatcgggat tgggagctgg tcgaatataa agaagaattg ggcgcgatgc
     1021 acgccaaaga cgaaaacggc aatccgatac ggtttaaatt tgtaaccatg ctggcgaaaa
     1081 agcctgaata atcctcaaaa atgccgtctg aacattttgt ttcagacggc atttttacgt
     1141 ctagtcccga tacgcccaat gattgaccgg gccgtgtccc gcgccgattt ccaaagggtt
     1201 tgagattgcc gccgtaatgt aggacttggc agtccgtacg gctttgcaaa cgtccgagcc
     1261 ttttgccaac tcggcggtga tgcaggcgga aaacgtgcag cccgtgccgt gcgtgtgggc
     1321 ggttggaaag cgcgggctgt ccaattccag cgtttcattt tgcgtaaaca gccaatccgt
     1381 gcagcgtccg cttgtgctgc cgttcaaatg tccgcctttg ataacgacat ttttgacacc
     1441 gtaatcaagc aggatttttg ccgcacgttc cgcatcttta cggttttcga tatgcacgcc
     1501 ggtcagggct tccgcctcgg gcaggttggg ggtcaataca tccgtatcgg gaagcagcag
     1561 gcgcgtcagt gccgcaacgg cggaatcctg caacagcggc gcaccgcctt tggcaatcat
     1621 cacagggtcg agtacgcgcc tgccgaagtc gcagtgtttc agcttgtcgg caacgcattc
     1681 gatgatttcc gccgtgccga gcattcctat tttgtaggcg cggatgtcaa agtcttccct
     1741 gattgcttgg atttgtgcgg tgatggtttc ggtcgggacg agatgaaccg ccgacacgcc
     1801 caaggtattt tgcgcggtaa cggcggtgat gacgcacgtt ccgaacacgc cgcgcatctg
     1861 aaacgttttc aaatccgcct gaatgcccgc accgccgccc gaatccgaac cggcgatggt
     1921 aagcgtttgc acaaaagagc ttttcatttg ttcctcctta atattgtgtc cgataaaaag
     1981 ggctaatgcc tgtaaaaaag cacggcgatg ccgtctgaaa accgcagcgc ggggtttgtg
     2041 gtgcattata tgccgtattg caggacaagg cacagggcag ggcggcgggg tgcatcgtag
     2101 caactgtatt tttgcccgac ggggtgaaaa atacagttgc tacacccact gataatgaaa
     2161 aaagagagca atgccgtctg aaccgcgtgt tgcggcgagc ataaaccggc acgctttatt
     2221 cgtcattccc acaaaaacag aaacctaaaa ttccgtcatt cctacgaaag cgggaatcca
     2281 gtgtgttcgg tttcagttgt ttttgggttt cgggtgattt ccaaatcgaa acctttgcaa
     2341 aattccccaa aatcccctaa attcccacca agacatttag gggatgttcc atgagcacct
     2401 tctttcaaca aaccgcacaa gccatgattg ccaaacacat cgaccgtttc ccgctattga
     2461 agttggacca ggtgattgat tggcagccga tcgagca
//
LOCUS       DAXIFD010000199         2489 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.199, whole genome shotgun sequence.
ACCESSION   DAXIFD010000199 DAXIFD010000000
VERSION     DAXIFD010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.199"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..183)
                     /locus_tag="ACFOCN_001912"
     CDS             complement(<1..183)
                     /locus_tag="ACFOCN_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA adenine N-6-methyltransferase family
                     protein"
                     /protein_id="HFC6971000.1"
                     /translation="MKEHKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLA
                     AITEPLAKKLNRLHVVE"
     gene            380..1090
                     /locus_tag="ACFOCN_001913"
     CDS             380..1090
                     /locus_tag="ACFOCN_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6971001.1"
                     /translation="MLFEGLPCLAVWCKNRLSAVLPVGGLNVSENLLEIETHPFDSVL
                     PPKAAVMMMGTFPPKEDKRAMQFHYPNFQNDMWRVYGLVFFGDADYFKVPSNGEAAHS
                     EKAFDAEKIKAFLHERGIASCPTVLKAVRQHGNASDKFLKVVETVDLAAVLAKIPECR
                     HICTTGGKATEILLDIQGGGIKMPKTGETVPFPFAGRDLTLTRLPSTSRAYPLSLAKK
                     AAAYRAFFEMAGLCEKQL"
     gene            1275..2477
                     /gene="trpB"
                     /locus_tag="ACFOCN_001914"
     CDS             1275..2477
                     /gene="trpB"
                     /locus_tag="ACFOCN_001914"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HFC6971002.1"
                     /translation="MKNYHAPDEKGFFGEHGGLFVSETLIPALQELADAYKAAKNDPE
                     FWEAFRHDLKHYVGRPSPVYHAARLSEHLGGAQIWLKREDLNHTGAHKVNNTIGQALL
                     AKRMGKKRVIAETGAGQHGVASATVAARFGMTCDVYMGADDIQRQMPNVFRMKLLGAN
                     VVGVESGSRTLKDAMNEAMREWVARVDDTFYIIGTAAGPAPYPEMVRDFQCVIGNEAK
                     AQMQEAIGRQPDVAVACVGGGSNAIGLFHPYIGEENVRLVGVEAGGLGVNTPDHAAPI
                     TSGAPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTVAK
                     DDEALEAFDLLCRFEGIIPALESSHAVAWAVKNAPKMGKDQVILVNLSGRGDKDINTV
                     AKLKGIKL"
BASE COUNT          575 a          645 c          718 g          551 t
ORIGIN      
        1 ttcgacaacg tgcaggcggt tcagcttttt cgccaaaggt tcggtaatcg ccgccaaacc
       61 cggaccgatt tcaatcacga catcatccgc ctgcgggcgc acggcgttga caatatcgct
      121 gataatccgc gtgtcctgca aaaaattctg cccgaaacgc ttgcgggctt tgtgttcttt
      181 catcgtgttt ccttttcggt tgaaaccccg ccctttaggg cggtagaatc agactctatt
      241 tgggaggggc gtaacccctt ccaaatcagg atggcacata gggcggtgct ttatgtgtcg
      301 tcctgtgtgt tgaaacataa atgtgtttac agtatccgtt tgatgtcggc attgtaaccg
      361 aaaacggcag ggcgtgataa tgctgtttga aggcttgccg tgtttggcgg tttggtgcaa
      421 aaaccggctg tctgccgttt tgcctgttgg aggattgaac gtgtctgaaa atctgcttga
      481 aatcgaaacc catcccttcg attccgtgtt gccgccgaag gctgcggtca tgatgatggg
      541 gacgtttccg cccaaggaag acaaacgcgc gatgcagttt cattatccga atttccaaaa
      601 cgatatgtgg cgcgtttacg ggctggtgtt tttcggcgat gcggattatt tcaaagtgcc
      661 gtccaacggg gaggctgcgc actctgaaaa agcgtttgat gccgagaaaa tcaaggcgtt
      721 tttgcacgaa cgggggattg cgtcctgtcc gaccgttttg aaggcggtac gtcagcacgg
      781 caatgcgtcc gacaagtttt taaaggtagt tgaaaccgtc gatttggcgg cggtgttggc
      841 aaaaataccc gagtgccgcc atatttgtac gacaggcggc aaggcgacgg aaatcctgct
      901 cgatattcaa ggtggcggca tcaaaatgcc gaaaacgggc gaaaccgtgc cgtttccgtt
      961 tgccggacgg gatttgacgc tgacgcgcct gccttcgact tcgcgtgcct atcctttgag
     1021 tttggcgaaa aaggcggcgg cgtatcgggc gtttttcgaa atggcgggtt tgtgtgaaaa
     1081 acagttataa ttgccgacaa tttcccgttc ggacggcatg tttgaaaaat atagtggatt
     1141 aacaaaaatc aggacaaggc ggcgaagccg cagacagtac aaatagtacg gcaaggcggg
     1201 gcaacgccgt accggttttt gttaatccac tataaattgc cgtctgaaaa tttgaagcac
     1261 aaggacgaaa tctgatgaag aactaccacg cgcccgacga gaagggcttt ttcggcgaac
     1321 acggcgggct gttcgtgtcc gagaccctga ttccggcttt gcaagagctg gcggatgcct
     1381 ataaggcagc gaaaaacgat cctgaatttt gggaagcgtt ccgccatgat ttgaaacatt
     1441 atgtcggcag gcccagcccc gtttaccacg ccgcgcggtt gtccgaacat ctgggcggtg
     1501 cgcaaatctg gttgaagcgc gaagacttga accacaccgg cgcgcacaaa gtcaacaaca
     1561 ccatcggtca ggcactgttg gcaaaacgca tgggtaaaaa acgcgtcatc gccgaaaccg
     1621 gcgcgggtca gcacggcgtg gcgagtgcca ccgttgccgc acgcttcggt atgacttgcg
     1681 acgtgtatat gggcgcggac gacatccaac gccaaatgcc caacgtgttc cgtatgaaat
     1741 tattgggtgc gaacgtggtt ggtgtagaaa gcggcagccg cacgctgaaa gacgcgatga
     1801 acgaagccat gcgcgaatgg gtcgcccgcg tggacgacac gttctacatc atcggtaccg
     1861 ccgccggccc cgcgccgtat cccgaaatgg tgcgcgattt ccaatgcgtg attggcaacg
     1921 aagctaaagc gcagatgcag gaagccatcg gcagacagcc cgacgttgcc gttgcctgcg
     1981 tgggcggcgg atcgaacgcc atcggtttgt tccacccgta tatcggcgaa gaaaacgtgc
     2041 gcctcgtcgg cgtggaggct ggcggtttgg gcgtgaacac ccccgatcac gccgcgccga
     2101 ttacttcggg cgcaccgatt ggcgtattgc acggtttccg cagctatctg atgcaggacg
     2161 aaaacggtca ggttttgggt acgcactctg tttccgcagg cttggattac cccggcatcg
     2221 gcccggaaca cagccatctg cacgacatca agcgcgtcga atacactgtt gccaaagacg
     2281 acgaagcact cgaagccttt gacttgctct gccgcttcga gggcatcatc cccgcgctcg
     2341 aatccagcca cgccgttgct tgggcggtga aaaacgcgcc gaaaatgggc aaagaccaag
     2401 tgattctggt caacctatcc ggtcgtggcg acaaagacat caataccgtc gcgaagctca
     2461 aagggattaa actgtaacct cgtccgtct
//
LOCUS       DAXIFD010000200         2483 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.200, whole genome shotgun sequence.
ACCESSION   DAXIFD010000200 DAXIFD010000000
VERSION     DAXIFD010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.200"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1080
                     /locus_tag="ACFOCN_001915"
     CDS             <1..1080
                     /locus_tag="ACFOCN_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6971003.1"
                     /translation="HEKTFFDKYGVRVSLLEDEDFIRAASMLAEEVFGFCIYKESKGS
                     GGRFYERCWLMGSEDVLYGRVHFGGQNNTILFELTGTGCGVAKEGWESRLFAFLTNAI
                     RPKITRVDIAKDFFNGEYSPNQAREDRNKGMFTCHHVKPKGECLGSDWEEDDEAKMTK
                     GKTYGIGSRESSKYVRVYEKGKQLGDKTSTWTRFEIEFKAKDIVIPFEVLQNPGEYFG
                     GAYPICERFAQKATRIHAVKEDKVISADRYLEWVKKQFGRAANGLKFIFPELDKAKLF
                     ELIEPSHHKLPKSLAPEAYDCAFLKAQAIHEQPAFKPYKDPYYMYEYYENLEKQLEQQ
                     KHVNNEESYNNFIYDKFARLPISWA"
     gene            1125..1415
                     /locus_tag="ACFOCN_001916"
     CDS             1125..1415
                     /locus_tag="ACFOCN_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971004.1"
                     /translation="MNIQLQGHIVGVKKFNGQIEGKSFDYCRLIVATPLDSSQGNALG
                     SSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQLVKKG"
     gene            1420..1617
                     /locus_tag="ACFOCN_001917"
     CDS             1420..1617
                     /locus_tag="ACFOCN_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971005.1"
                     /translation="MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAI
                     NAGLEEIGNQYEFVVFGFLKD"
     gene            1691..1909
                     /locus_tag="ACFOCN_001918"
     CDS             1691..1909
                     /locus_tag="ACFOCN_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HFC6971006.1"
                     /translation="MKFINTCRKYGAKLAVVTAAPLALAAHANATLPDTAKNALEAAK
                     ADGMEAGWIVVGVFAALFVFSIVKRVMK"
     gene            1916..2194
                     /locus_tag="ACFOCN_001919"
     CDS             1916..2194
                     /locus_tag="ACFOCN_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971007.1"
                     /translation="MYYQVGNKCLEKHQAENLYFSLVVPRIKENGQIVRPEYNGSLWK
                     MSDGQPLRLLLAECSLKDNLQSGLETGWIVFGILASVYFVSLLKKVLK"
     gene            2322..>2483
                     /locus_tag="ACFOCN_001920"
     CDS             2322..>2483
                     /locus_tag="ACFOCN_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
                     /protein_id="HFC6971008.1"
                     /translation="MNKPFITQAQLALYKYQPSSKYFGQSMAVIAQSEFVEFAKINKS
                     ENVIDCFSFF"
BASE COUNT          740 a          561 c          563 g          619 t
ORIGIN      
        1 catgaaaaaa cctttttcga taaatacggc gttcgtgtaa gtcttttgga agacgaagat
       61 tttattcgcg ccgcgtccat gctcgccgaa gaagttttcg gtttctgtat ctacaaagaa
      121 tccaaaggct cgggcggtcg tttctatgag cgctgttggt tgatgggttc ggaagacgtc
      181 ctatacggtc gcgtccattt tggcggacaa aacaatacca tccttttcga actgaccggc
      241 accggttgcg gcgtcgcaaa agaaggctgg gaatcacgac ttttcgcatt cctgactaat
      301 gcaatccgcc caaaaatcac acgcgttgac atcgcaaaag actttttcaa cggcgaatac
      361 agcccgaacc aagcccgtga agaccgaaat aaaggtatgt ttacctgtca tcacgtcaaa
      421 ccaaaaggcg aatgtttggg gtcagattgg gaagaagacg atgaagccaa aatgaccaaa
      481 ggcaagacct atggtatcgg ctcccgtgaa tcgtccaaat atgtccgcgt ctatgaaaaa
      541 ggcaagcagt tgggcgataa aacaagcaca tggacgcgct ttgaaattga attcaaagca
      601 aaagacatcg ttatcccttt cgaagttttg cagaatccgg gcgaatattt cggcggcgca
      661 tatccgattt gcgaacgatt cgcccaaaag gcaacgcgca tacacgcggt taaggaagat
      721 aaggtcattt cagccgaccg ctaccttgaa tgggtaaaaa aacagttcgg acgtgcggca
      781 aacggtctga aattcatttt tcccgaattg gacaaagcca aactgtttga actgattgag
      841 ccgagtcatc acaagctgcc caagtctttg gctcccgaag cctacgactg cgcctttttg
      901 aaagctcaag ccattcatga acagcccgca ttcaaaccgt acaaagaccc ttactatatg
      961 tacgaatatt acgagaatct tgaaaaacag cttgaacagc aaaaacacgt caacaatgaa
     1021 gaaagctata acaacttcat ttacgacaaa ttcgcaagac taccgatttc atgggcttaa
     1081 agtgtctgcc cgaaagacgt ttaatcacac aaggaaacca aaaaatgaac atccaacttc
     1141 aaggccacat cgtcggcgtt aaaaaattca acggacaaat cgaaggcaag agcttcgact
     1201 attgccgcct gattgtcgcc acacccttag acagctccca aggcaacgca ttgggcagct
     1261 ctactactga atacgatttc ggcggctctg ccaatttcga gcagttccga aacgcccaat
     1321 ttcccatcga agcaaacctg aacgtggaaa tcgttactac gggcaaaacc caaaaactga
     1381 aagtcatcgg ttttcaactc gtgaagaaag gctgattgaa tgcagaaagt ctatgttgtc
     1441 cagtccgtat caacagggga ctttctgtat ctctctcctg aaacgggcga catcggacat
     1501 accaaattaa tcaccaatgc cgattatttc tacgacttcg aagaagcgat taacgcaggt
     1561 ttggaagaaa tcggcaacca atacgaattt gtcgtattcg gatttttgaa agactgattt
     1621 tcggatgttc ggcggtcgtc tgaaaaacgc tccatccatt accgccaaac actttttgaa
     1681 ggaaaatatc atgaaattta ttaacacctg ccgtaaatac ggcgcaaaac tggctgttgt
     1741 aacagctgct cccctggctt tggccgcaca tgcaaatgca acgttgcccg atacggcaaa
     1801 aaacgctttg gaagccgcaa aagcggacgg tatggaagcc ggttggattg tcgttggcgt
     1861 tttcgccgcg ctttttgtat tttccatcgt taagagagtg atgaagtaag acggcatgta
     1921 ctaccaagtc ggaaataaat gtcttgagaa gcaccaggct gaaaaccttt atttcagctt
     1981 ggtagtacca agaatcaaag aaaacggaca gattgtcagg ccggaatata acggcagcct
     2041 gtggaagatg tcggacggtc agccgctaag gcttttattg gcggaatgca gtctgaaaga
     2101 caacctgcaa agcggccttg aaacaggctg gatagtattc ggcatcctcg cgtccgttta
     2161 ctttgtttcc ctgctgaaaa aggttttgaa atgatggatt tttattttta tctcggcgtt
     2221 tccgtacccg tattaatcgg ggcggttctg tttaagaatt gagcgcatga agttatggtg
     2281 tcaaaatcag gctttcaaaa caatcattga aaggcagaac catgaacaag ccgtttatca
     2341 ctcaggcgca gttggcactt tataaatatc agccgtctag caagtatttt gggcaatcga
     2401 tggcggttat agcgcaatct gaatttgttg aatttgcgaa gattaataag tctgaaaatg
     2461 ttattgattg tttctctttt ttc
//
LOCUS       DAXIFD010000201         2456 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.201, whole genome shotgun sequence.
ACCESSION   DAXIFD010000201 DAXIFD010000000
VERSION     DAXIFD010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.201"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(121..1572)
                     /locus_tag="ACFOCN_001921"
     CDS             complement(121..1572)
                     /locus_tag="ACFOCN_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine synthase"
                     /protein_id="HFC6971009.1"
                     /translation="MLSFLSGLLSLGIEVLWVRMFSFAAQSVPQAFSFTLACFLTGIA
                     VGAYFGKRICRSRFVDIPFIGQCFLWAGIADFLILGAAWLLTGFSGFVHHAGIFITLS
                     AVVRGLIFPLVHHVGTDGNKSGRQVSNVYFANVAGSALGPVLIGFVILDFLSTQQIYL
                     LICLISAAVPLFCTLFQKSLRLNAVSVAVSLMFGILMFLLPDSVFQNIADRPDRLIEN
                     KHGIVAVYHRDGDKVVYGANVYDGAYNTDVFNSVNGIERAYLLPSLKSGIRRIFVVGL
                     STGSWARVLSAIPEMQSMIVAEINPAYRSLIADEPQIAPLLQDKRVEIVLDDGRKWLR
                     RHPDEKFDLILMNTTWYWRAYSTNLLSAEFLKQVQSHLNPDGIVMFNTTHSPHAFATA
                     VHSIPYAYRYGHMVVGSATPVVFPNKELLKQRLSRLIWPESGRHVFDSSTVDAAAQKV
                     VSRMLIQMTEPSAGAEVITDDNMIVEYKYGRGI"
     gene            complement(1595..2215)
                     /locus_tag="ACFOCN_001922"
     CDS             complement(1595..2215)
                     /locus_tag="ACFOCN_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HFC6971010.1"
                     /translation="MNSTASKTLKGLSLVFFASGFCALIYQVSWQRLLFSHIGIDLSS
                     ITVIISVFMVGLGVGAYFGGRIADRFPSSIIPLFCIAEVSIGLFGLVSRGLISGLGHL
                     LVEADLPIIAAANFLLLLLPTFMMGATLPLLTCFFNRKIHNVGESIGTLYFFNTLGAA
                     LGSLAAAEFFYVFFTLSQTIALTACFNLLIAASVWLRYRKDGYSEH"
BASE COUNT          769 a          581 c          572 g          534 t
ORIGIN      
        1 taggaataag aattcgggac aaaatgttta aaccattttg tcccgactgc tgtgatgcgg
       61 tttttttgaa ctagcaggac gttacctaaa acctgcgttg cctgaaaccc tttaagacgg
      121 ttaaatccct ctgccgtatt tgtattctac aatcatatta tcgtcggtaa taacttccgc
      181 cccagccgaa ggttccgtca tctgaatcag catacgagag acaacctttt gtgctgcagc
      241 atccacggtg ctgctgtcaa atacgtgcct gccgctttcc ggccaaatca accgggagag
      301 acgttgcttg agcagttctt tattagggaa aactaccggg gttgccgagc cgactaccat
      361 atgcccatag cggtatgcat agggaatact gtgtacggcg gtagcaaaag catgcgggct
      421 gtgcgtggta ttaaacatta caataccatc cgggttaagg tggctttgca cctgttttaa
      481 aaattccgca ctcaacaggt tggtggaata ggcacgccag taccaagtcg tattcatcaa
      541 aatcaggtcg aatttttcat caggatggcg acgcagccat ttcctaccgt catccaatac
      601 aatttcaaca cgtttgtcct gcaaaagcgg ggcgatttgc ggctcgtccg cgataaggct
      661 acggtatgcc ggattgattt ccgcaacgat catcgactgc atttccggaa tggcagacaa
      721 gacgcgcgcc cacgaacctg tactcaatcc aacgacgaaa atgcggcgta tgccagactt
      781 cagggagggt agcagatagg cacgttcgat gccgttgaca ctattgaata catcggtatt
      841 gtatgcgccg tcgtatacat tcgccccata aacaacctta tcaccatctc tatggtaaac
      901 cgcaacaatg ccgtgtttgt tttcaatcag cctatccgga cggtcagcaa tattttgaaa
      961 gacagaatcc ggcagtagga acatgaggat gccgaacatt agggaaactg ctaccgacac
     1021 tgcattcagt cggagacttt tttggaacag tgtacaaaac aaagggacag cagcagaaat
     1081 caaacagatg agcaggtaaa tctgttgggt ggacaagaaa tcaagtatca caaagccgat
     1141 aaggaccgga cccaatgcac tgccggcaac gttggcgaaa taaacattgg aaacctgtcg
     1201 tccggatttg ttgccatccg tacccacatg gtgtacgagc gggaaaatca accctctgac
     1261 gacggcagac agggtaatga agataccggc gtggtggacg aagccggaaa aacccgtcaa
     1321 caaccacgca gcacccaaaa tcaaaaagtc ggcaataccc gcccacaaga agcactgccc
     1381 gataaaggga atatcaacaa agcggctgcg gcaaatccgt ttgccaaaat acgcgccgac
     1441 ggcgataccg gtcagaaaac aggcaagggt aaatgaaaat gcctgaggca cggactgtgc
     1501 tgcgaacgaa aacatcctca cccacaagac ttctataccc aagctcaata agccgctaag
     1561 gaaagaaagc atataaatca aactagtatt cggtttagtg ttcactatat ccatcctttc
     1621 tgtaacgcag ccatactgaa gcagcaatca gaaggttaaa gcaggctgtc agcgcaatgg
     1681 tttgggagag ggtaaaaaag acgtagaaaa attcggcggc ggcaagcgat ccgagtgccg
     1741 cacccaaagt gttgaaaaaa tataaggtac cgatagactc gccaacatta tgtattttcc
     1801 ggttaaaaaa acaggtcagc aagggcaagg tcgcgcccat cataaaggta ggaagcagca
     1861 ataagaggaa attggcagca gcgatgatgg gcaaatcagc ctcaactaaa agatgcccca
     1921 agccggaaat cagacccctg cttaccaaac cgaacagacc gatggatact tcagcgatgc
     1981 aaaacagggg gatgatactt gaaggaaaac ggtcagcaat gcgtccaccg aaatacgcac
     2041 ctacacccaa gccgaccata aatacagaaa taatgacagt aatcgaactc aaatcgatac
     2101 ctatgtgact gaatagaagc ctctgccagc tgacctggta aatcagggcg cagaatccag
     2161 aggcgaaaaa caccagcgac aatcctttca gggttttact tgcggtcgaa ttcatatttt
     2221 ctattttcaa ataggcggaa ctataaatga aatgtatcaa tgtgtaaaca tttgtattaa
     2281 ccgtaggaaa tcaccgtatt gctcaaactg caggccggga aaataaactc gtaagcccgc
     2341 aaacggcgta tcactgttca aactgctgtg cggcttcacg gtgttataaa aataatgggg
     2401 ctgtcctgga caactaagat aaactcgatt ttactaattg ttttaaaatg gaaatt
//
LOCUS       DAXIFD010000202         2393 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.202, whole genome shotgun sequence.
ACCESSION   DAXIFD010000202 DAXIFD010000000
VERSION     DAXIFD010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.202"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            77..2227
                     /gene="yccS"
                     /locus_tag="ACFOCN_001923"
     CDS             77..2227
                     /gene="yccS"
                     /locus_tag="ACFOCN_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YccS family putative transporter"
                     /protein_id="HFC6971011.1"
                     /translation="MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGII
                     AGGLVDLDNRLTGRLKNIITTVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGA
                     VGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAIILFQIILPHRP
                     VQENVANAYEALGSYLEAKADFFDPDEAEWIGNRHIDLAMSNTGVITAFNQCRSALFY
                     RLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRLLEMQ
                     GQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDSNDSPDIRHLRRLLDNLGS
                     VDQQFRQLQHNGLQAENDRMGDTRIAALETSSLKNTWQAIRPQLNLESGVFRHAVRLS
                     LVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVP
                     YFTPSVETKLWIVIVSTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRI
                     IDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKITERLKSGETGDDVE
                     YRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRS
                     EMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQ
                     SHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA"
BASE COUNT          574 a          919 c          476 g          424 t
ORIGIN      
        1 agctaaggcg aggcaacgcc gtactggttt ttgttaatcc actatattca cttcataaca
       61 ataaaccggt aaaaccatga aaaccccact cctcaagcct ctgctcatta cctcgcttcc
      121 cgttttcgcc agtgttttta ccgccgcctc catcgtctgg cagctaggcg aacccaagct
      181 cgccatgccc ttcgtactcg gcatcatcgc cggcggcctt gtcgatttgg acaaccgcct
      241 gaccggacgg ctgaaaaaca tcatcaccac cgtcgccctg ttcaccctct cctcgctcac
      301 ggcacaaagc accctcggca cagggctgcc cttcatcctc gccatgaccc tgatgacctt
      361 cggctttacc attttaggcg cggtcgggct gaaataccgc accttcgcct tcggcgcact
      421 cgccgtcgcc acttacacca cacttaccta cacccccgaa acctactggc tgaccaaccc
      481 cttcatgatt ttatgcggca ccgtactgta cagcaccgcc atcatccttt tccaaatcat
      541 cctgccccac cgccccgttc aagaaaacgt cgccaacgcc tacgaagcgc tcggcagcta
      601 cctcgaagct aaagccgact ttttcgatcc cgacgaagcc gaatggatag gcaaccgcca
      661 catcgacctc gccatgagca acaccggcgt catcaccgcc ttcaaccaat gccgttccgc
      721 cctgttttac cgccttcgcg gcaaacaccg ccacccgcgc accgccaaaa tgctgcgtta
      781 ctactttgcc gcccaagaca tccacgaacg tatcagctcc gcccacgtcg actaccaaga
      841 gatgtccgaa aaattcaaaa acaccgacat catcttccgc atccaccgcc tgctcgaaat
      901 gcagggacaa gcctgccgca acaccgccca agccctgcgc gcaagcaaag actacgttta
      961 cagcaaacgc ctcggccgcg ccatcgaagg ctgccgccaa tcgctgcgcc tcctttcaga
     1021 cagcaacgac agtcccgaca tccgccacct gcgccgcctt ctcgacaacc tcggcagcgt
     1081 cgaccagcag ttccgccaac tccagcacaa cggcctgcag gcagaaaacg accgcatggg
     1141 cgacacccgc atcgccgccc tcgaaaccag cagcctcaaa aacacctggc aggcaatccg
     1201 tccgcagcta aacctcgaat caggcgtatt ccgccatgcc gtccgcctgt ccctcgtcgt
     1261 tgccgccgcc tgcaccatcg tcgaagccct caacctcaac ctcggctact ggatactact
     1321 gaccgccctt ttcgtctgcc aacccaacta caccgccacc aaaagccgcg tccgccagcg
     1381 catcgccggc accgtactcg gcgtaatcgt cggctcgctc gtcccctact tcaccccgtc
     1441 tgtcgaaacc aagctttgga tcgtcatcgt cagtaccacc ctctttttca tgacccgcac
     1501 ctacaaatac agtttctcca ccttcttcat taccattcaa gccctgacca gcctctccct
     1561 cgcaggtttg gacgtatacg ccgccatgcc cgtacgcatc atcgacacca ttatcggcgc
     1621 atcccttgcc tgggcggcgg tcagctacct atggcccgac tggaaatacc tcacgctcga
     1681 acgcaccgcc gcccttgccg tatgcagcaa cggcgcctat ctcgaaaaaa tcaccgaacg
     1741 cctcaaaagc ggcgaaaccg gcgacgacgt cgaataccgc gccacccgcc gccgcgccca
     1801 cgaacacacc gccgccctca gcagcaccct ctccgacatg agcagcgaac ccgcaaaatt
     1861 cgccgacagc ctgcaacccg gctttaccct gctcaaaacc ggctacgccc tgaccggcta
     1921 catctccgcc ctcggcgcat accgcagcga aatgcacgaa gaatgcagcc ccgactttac
     1981 cgcacagttc cacctcgccg ccgaacacac cgcccacatc ttccaacacc tgcccgaaac
     2041 cgaacccgac gactttcaga cagcactgga tacactgcgc ggcgaactcg acaccctccg
     2101 cacccacagc agcggaacac aaagccacat cctcctccaa cagctccaac tcatcgctcg
     2161 gcagctcgaa ccctactacc gcgcctaccg acaaattccg cacaggcagc cccaaaacgc
     2221 agcctgaaaa agtttcggca ttttgtaaga gagggcagat tgtcagacag gttgcaagat
     2281 agtggataaa gctttgcgca gggtaaatgc gtagcaactg aaccgtcatt cccacgaatc
     2341 tacattccgt cattcccacg aaaacagaaa accaaaaaca gaaacctaaa atc
//
LOCUS       DAXIFD010000203         2384 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.203, whole genome shotgun sequence.
ACCESSION   DAXIFD010000203 DAXIFD010000000
VERSION     DAXIFD010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.203"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            27..572
                     /locus_tag="ACFOCN_001924"
     CDS             27..572
                     /locus_tag="ACFOCN_001924"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6971012.1"
                     /translation="MGKTVTLTSGHSNTDPGAVNGSDREADLAQDMCNIVAAILRDDY
                     GLTVKTDGTGKGNMPLREAVKLIRGSDVAIEFHTNAAVSKAATGIEALSTVKNKRWCQ
                     VLSKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTT
                     KWGICRAIADAIAMELGAARV"
     gene            569..775
                     /locus_tag="ACFOCN_001925"
     CDS             569..775
                     /locus_tag="ACFOCN_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971013.1"
                     /translation="MNIIGKLKEAASYFLTKLIGENPSNEQVNRALIQMPNVRPIHTY
                     PRPNLRNSGVAAAKRAARKRKNRR"
     gene            778..942
                     /locus_tag="ACFOCN_001926"
     CDS             778..942
                     /locus_tag="ACFOCN_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971014.1"
                     /translation="MGQVAFYEKMIGLWSAKSREASEQADLAAFEFAEGELANYQEML
                     KRHLQTKSVE"
     gene            945..1181
                     /locus_tag="ACFOCN_001927"
     CDS             945..1181
                     /locus_tag="ACFOCN_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971015.1"
                     /translation="MRILDIFKNPATGNVSHSKLWANVACAAGTVKFVMLPDPSAEIW
                     AVYLGIVGGYAVARSLVSVKRQEVENESRETAGE"
     gene            1153..1572
                     /locus_tag="ACFOCN_001928"
     CDS             1153..1572
                     /locus_tag="ACFOCN_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971016.1"
                     /translation="MNLVKLLANNWQPIAIIALVGTLLAVSHHQGYKSAFAKQQAVID
                     KMEKDKAQALLLSAQNYARELEQARAEAKKYEVKAHAVGMALAKKQAEVSRLKTENKK
                     EIENVLTQDRKNAGGGCIDGFGHHGLQLYKRALGYGN"
     gene            1469..1774
                     /locus_tag="ACFOCN_001929"
     CDS             1469..1774
                     /locus_tag="ACFOCN_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971017.1"
                     /translation="MSLLKTVKMQAAVVLTALAITACSSTSAPSATEIKVVEKAVMPT
                     PPAALMVAPVRPNPPKDGKTATLLEHAAEFGGYVAELENQNQAWRDWAGNHSRKVGN"
     gene            complement(1819..1989)
                     /locus_tag="ACFOCN_001930"
     CDS             complement(1819..1989)
                     /locus_tag="ACFOCN_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HFC6971018.1"
                     /translation="MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLL
                     KSTTAATPVKEV"
     gene            2002..2220
                     /locus_tag="ACFOCN_001931"
     CDS             2002..2220
                     /locus_tag="ACFOCN_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971019.1"
                     /translation="MNEYTFSYRFNGKSWSLSIWADNPEEARAKFRAARENAHYDGEV
                     VAKVYTFVNISWVKKLYKRTKYLMGIKE"
BASE COUNT          618 a          545 c          689 g          532 t
ORIGIN      
        1 caatcaatat tttttggaga tgatgaatgg gcaaaaccgt aaccttaacc tctggacaca
       61 gcaacaccga cccgggtgcg gtcaacggca gcgaccgtga ggcggacttg gcgcaggata
      121 tgtgcaatat cgtggctgct attttgcgcg atgactacgg tttgactgtt aaaaccgacg
      181 gcacgggcaa aggcaatatg ccgctgcgtg aagcggtcaa gctgattcgc ggctcggatg
      241 tggcgattga gtttcacacc aacgctgccg tcagcaaagc ggcgacaggc atcgaagcct
      301 tgagtaccgt taaaaacaaa cgctggtgtc aggtgttgag caaagccgtt gccaagaaaa
      361 ccggctggaa actgcgcggc gaagacggct ttaaacccga caatgcgggc cagcattcgc
      421 gcctggctta tgcacaagcc ggcggcattg tgtttgagcc ttttttcatc agcaacgaca
      481 ctgatttggc cttgtttaag acgactaaat ggggcatctg ccgcgcgatt gcggacgcga
      541 ttgcgatgga attgggggcg gcaagagtat gaatattatt ggtaaattga aagaagctgc
      601 ttcctatttt cttacaaaat tgattggaga aaatcctagt aatgagcagg taaaccgcgc
      661 acttatacag atgccaaatg ttcgtccgat acacacctat ccacgcccaa atttaagaaa
      721 ctcaggcgtg gcagccgcga aacgcgcggc gcgcaaacgc aagaatcgtc gttaatcatg
      781 ggacaggttg cgttttacga aaagatgatt gggctgtggt cggccaaaag ccgtgaggca
      841 agcgaacagg cagacttggc ggcgtttgaa tttgcggagg gcgaactggc caattatcag
      901 gaaatgctga aacggcacct gcaaaccaaa agtgtggaat agcaatgcgt attttggata
      961 tttttaaaaa cccagcgaca ggcaatgtgt cgcactcgaa actgtgggca aacgttgcct
     1021 gcgcggcggg gacggttaag tttgtgatgc tgcccgaccc gtcggcggag atttgggcgg
     1081 tgtatttggg cattgtcggc ggctatgcgg tggcgcgttc gttggtcagc gtcaaacgtc
     1141 aggaggtcga gaatgaatct cgtgaaactg ctggcgaata actggcaacc gattgccatc
     1201 atcgcgcttg tcggcacgct cttggcggtg tcgcaccatc aaggctacaa gtcggctttt
     1261 gcgaagcagc aggcggtcat tgacaagatg gaaaaagaca aagcgcaagc cctgctgttg
     1321 tcggctcaaa actacgcccg cgagctggaa caggcgcgtg cggaagctaa aaaatatgaa
     1381 gtcaaggcgc acgccgtcgg catggctttg gcgaaaaaac aggcggaagt cagccgtctg
     1441 aaaacggaaa ataaaaagga aatcgaaaat gtccttactc aagaccgtaa aaatgcaggc
     1501 ggcggttgta ttgacggctt tggccatcac ggcttgcagc tctacaagcg cgccctcggc
     1561 tacggaaatt aaggttgtcg aaaaggcggt catgccgaca ccgcctgccg cattgatggt
     1621 cgcgccggtg cgcccgaatc cgccgaaaga cggcaagacg gccacgctgt tggaacacgc
     1681 cgccgagttt ggcggctatg ttgccgaact ggaaaatcaa aatcaggctt ggcgcgactg
     1741 ggcgggcaat cactcccgca aagtcggaaa ctgacaaaaa agcccgcgta gggcgcgggc
     1801 tgagggtgaa agcggatttt atacctcttt tacaggggta gcggcggtag tgcttttcag
     1861 caaatcgact gcgtgctgac agttttgctt gctggtgtag ccttcgccct gagcgatgat
     1921 ttcatggttg gctgctttca aacgccaacg gtattcgcct tttgcgtctt tatagatttc
     1981 aaaatacata aggtttctcc tatgaatgag tacacgtttt cttaccgctt taacggcaag
     2041 tcctggtcat tgagcatttg ggcggacaac cctgaagaag ccagggcgaa atttcgggct
     2101 gcacgagaaa atgcgcacta tgacggcgaa gttgtagcaa aggtttatac atttgtaaat
     2161 atttcgtggg ttaagaaatt gtacaagcgg acaaaatatt taatgggtat caaagaatga
     2221 cctaccgtga attagttgaa cgtcagttgg ctgtgcgcca tgccgatttg gaattgggct
     2281 taagccgcgc acgcgaacaa gagccgtttg tcattcatgt ttccgatctg ttggataagg
     2341 caggcattga gtacgcggta cgcatggata aggattttca gacg
//
LOCUS       DAXIFD010000204         2360 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.204, whole genome shotgun sequence.
ACCESSION   DAXIFD010000204 DAXIFD010000000
VERSION     DAXIFD010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.204"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            44..2257
                     /locus_tag="ACFOCN_001932"
     CDS             44..2257
                     /locus_tag="ACFOCN_001932"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFC6971020.1"
                     /translation="MTAISPIQDTQSATLQELREWFDSYCAALPNNDKKLVLAARSLA
                     EAHYPSDAATPYGEPLPDHFLGAAQMVHELDLLPDAVAATLLADIGRYVPDWNLLVSE
                     RCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIK
                     LAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE
                     KYREIALLLDEKRTERLEYIENFLNILRGELKKYNVHFEVAGRPKHIYSIYKKMVKKK
                     LSFDGLFDIRAVRILVDTVPECYTTLGIVHSLWQPIPGEFDDYIANPKGNGYKSLHTV
                     IVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKEGGKGDSAYEQKIAWLRQLLDWREN
                     MAESGKEDLAAAFKTELFNDTIYVLTPHGKVLSLPTGATPIDFAYALHSSIGDRCRGA
                     KVEGQIVPLSTPLENGQRVEIITAKEGHPSVNWLYEGWVKSGKAISKIRAYIRQQNAD
                     TVREEGRVQIDKQLAKLTPKPNLQELAENLGFKKLDDLYTAVGQGEISNRAIQKACGT
                     LNEPPPVPVSETTIVKQSKIKKGGKNGVLIDGEDGLMTTLAKCCKPAPPDDIVGFVTR
                     DRGISVHRKTCPSFRHLAEQAPEKVLDASWAALQEGQMFAVDIEIRAQDRSGLLRDVS
                     DALARHKLNVTAVQTQSRDLEASMRFTLEVKQVTDLPRVLASLGDVKGVLSVTRL"
BASE COUNT          606 a          765 c          568 g          421 t
ORIGIN      
        1 ctgttacaat aaactcgttt ttatcggaac ggaagacccc atcatgaccg ccatcagccc
       61 gattcaagac acgcaaagcg cgactctgca agaattgcgc gaatggttcg acagctactg
      121 cgccgcgctg ccgaacaacg ataaaaaact tgtcttagcc gcccgttcgc tggcggaagc
      181 acattacccc tccgatgccg ccacgccgta tggcgagccg ctgcccgacc acttcctcgg
      241 cgcggcgcaa atggttcatg aactcgacct gctccccgat gccgtcgccg ccaccctgct
      301 tgccgacatc ggacgctacg tccccgattg gaacctattg gtttccgaac gctgcaacag
      361 taccgtcgcc gagctggtca aaggtgtgga cgaagtgcag aaactcaccc acttcgcccg
      421 ggtggacagc ctcgccacgc cagaagaacg cgcccagcag gcagaaacta tgcggaaaat
      481 gctgctggcg atggttaccg acatccgcgt cgtgttaatc aaactggcga tgcgtacgcg
      541 caccctgcaa tttttaagca acgcccccga cagccccgaa aaacgcgccg tcgccaaaga
      601 aaccctcgac atcttcgccc cgctcgccaa ccgtttgggc gtgtggcagc tcaaatggca
      661 gctcgaagat ttgggcttcc gccatcaaga gcccgaaaaa taccgcgaaa tcgcgctgct
      721 tttggacgaa aaacgcaccg aacgcctcga atacatcgaa aacttcctca acatcctgcg
      781 cggtgaactc aagaaataca atgtccattt cgaagtcgcc ggccgcccga aacacatcta
      841 ctccatttac aaaaaaatgg tgaagaaaaa actcagcttc gacggcctct ttgacatccg
      901 cgccgtgcgg attctggttg ataccgtccc cgagtgttac accacgctgg gcattgtcca
      961 cagcctttgg cagcctatcc ccggcgagtt cgacgactac atcgccaacc cgaaaggcaa
     1021 cggctataaa agtttgcaca ccgtcatcgt cggtcccgaa gacaaaggtg tggaagtgca
     1081 aatccgcacc ttcgatatgc accaattcaa cgaattcggt gtcgccgccc actggcgtta
     1141 caaagaaggc ggcaaaggcg attccgccta cgagcaaaaa atcgcctggt tgcgccaact
     1201 tttggactgg cgcgaaaata tggcggaaag cggcaaggaa gacctcgccg ccgccttcaa
     1261 aaccgagctt ttcaacgaca cgatttatgt cctgaccccg cacggcaaag tcctctccct
     1321 gcccacgggc gcgaccccca tcgacttcgc ctacgccctg cacagcagca tcggcgaccg
     1381 ctgccggggc gcgaaagtcg aagggcaaat cgtgccgctg tccaccccgc ttgaaaacgg
     1441 acagcgcgtc gaaatcatta ccgccaaaga agggcatcct tccgtcaact ggctgtacga
     1501 aggctgggtc aaatccggca aggcaatcag taaaatccgc gcctacatcc gccagcaaaa
     1561 cgccgacacc gtgcgcgaag aaggccgcgt ccaaatcgac aagcagcttg ccaaactcac
     1621 gcccaagccc aacctgcaag agcttgccga aaacctcggc ttcaaaaaac tcgacgacct
     1681 ctacactgcc gtcggacaag gcgaaatttc caaccgcgcc atccaaaaag cctgcggcac
     1741 gctgaacgaa ccgccgcccg tacccgtcag cgaaaccacc atcgtcaaac agtccaaaat
     1801 caaaaaaggc ggcaaaaacg gtgtgctcat tgatggcgaa gacggtttga tgaccacgct
     1861 tgccaaatgc tgcaaacccg cgccgcccga cgacattgtc ggcttcgtta cccgcgatcg
     1921 cggcatttcg gtacaccgca aaacctgccc ctctttccga cacctcgccg aacaagcacc
     1981 tgaaaaagtg ctggacgcaa gctgggcggc gttgcaggaa ggacaaatgt ttgccgtcga
     2041 tatcgaaatc cgcgcccaag accgctccgg gcttttgcgc gacgtatccg acgcgctcgc
     2101 ccgccacaaa ctcaacgtta ccgccgtgca aacccagtcc cgcgacttgg aagccagtat
     2161 gcggttcacg ctcgaagtca aacaagttac cgacctccca cgcgtcctcg ccagcctcgg
     2221 cgacgtcaaa ggcgtattga gcgttacccg gctttaaata caaaaatgcc gtctgaaagc
     2281 cgtataacgc ttcagacggc attttgattg ccggggtttg ctattttttg ttgcataatc
     2341 aattaaaaac aaaatagtac
//
LOCUS       DAXIFD010000205         2343 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.205, whole genome shotgun sequence.
ACCESSION   DAXIFD010000205 DAXIFD010000000
VERSION     DAXIFD010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.205"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(328..2208)
                     /locus_tag="ACFOCN_001933"
     CDS             complement(328..2208)
                     /locus_tag="ACFOCN_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HFC6971021.1"
                     /translation="MNIFYEESGQFKIAAIIQKNDATYQVDTQHGKRTKVKANNVFAE
                     FDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFSAEAIAEEYFGHAPTKTELAATLIA
                     LYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
                     ADLKTILHAPDKQSLTYKAFTKAADALKISAYELAKKTGGITSIPQYLQDGFEIKYFP
                     KGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPS
                     LAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAHRPAVSIYFDVDSE
                     FNTGEPTCKIEAVNISENLRIQAIEPHFNAEAGLDEAGEMMFAHHQDLIWFYQFAIAL
                     QKARGKYEPDRAPQYDYSIELDEEGNVSIVRRERGSPIDTLVSEMMILANSTWAQMLD
                     ENDLPGLFRVQPAGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDD
                     TAEPLFQQSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGTSELTATILKE
                     DLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGN
                     AV"
BASE COUNT          469 a          563 c          697 g          614 t
ORIGIN      
        1 gtataagttc ccgtgcggac agacctatat tcccacctgc gcgggaatga cgattcagaa
       61 gttacacgaa actcaaaaaa aacgaaaccg aacgaaccgg attcccgctt ttacgggaat
      121 gacggcgcat aagttcccgt gcggacagac ctagattccc acctgcgtgg gaatgacggg
      181 attttagatt gcgggtattt atcgggaacg gcggcttgga agttcattga aacggaaaaa
      241 caacggaaac ccaaaaaacc ggattcccga ctgtgggaat gatgagattc aggtttctgt
      301 ttttgccgga gtttgccgta tcgggcttca gacggcattg cctgccgttg tacccgcggg
      361 tgcgactgcc ttgatgtagt tgagcgagac aaactgcttc tcggcatcca attcggtgat
      421 tttgaacaat gcctgtgatt tgggcagcgc gtcaaacgga ataccggtcg cgcgcgttac
      481 cagcggcagg ccttcaatgc ggacgaggtc ttctttgagg atggtggccg tcagctcgct
      541 cgtgccttgc tgttgcagat agacgaggct ccagtaggct tccatttggc gttggaagtc
      601 ggcgtaggct gtataggcgg catcaaagtc gcgcagcgcg gcgaagagtt cggcatcgct
      661 ttgttggaaa agcggctcgg cggtgtcgtc tatcaggctg atcagttgct tttggttgat
      721 gtagtcggcg gcgcggcgca gcggcgaggt aaaccagccg taatgctgca cgcccattcc
      781 gatgtgcggc tcggatttgg tgctcatacg cactttgcct gccggttgca cgcggaaaag
      841 gccgggcagg tcgttttcat ccaacatttg cgcccaagtg ctgttggcaa gaatcatcat
      901 ctcgctgacc agcgtatcga tgggagaacc gcgttcgcgg cggacgatgg atacgttgcc
      961 ttcctcatcc aattcgatgc tgtaatcgta ttgcggcgca cggtcgggct cgtatttgcc
     1021 gcgtgctttt tgcagggcga tggcgaattg atagaaccaa atcaggtctt gatggtgggc
     1081 gaacatcatt tcgcccgctt cgtccaagcc cgcttcggcg ttgaaatgcg gttcgatggc
     1141 ttggatacgc aggttttcgg agatgttgac cgcttcgatt ttgcaggtcg gttcgccggt
     1201 gttgaactcg ctgtccacat cgaaataaat gctgacggca gggcggtgtg cgcctgcatc
     1261 aaggctgaac gcggcaatcc agttttcggg cagcatcgtg attttgccgc cggggaaata
     1321 aaccgtgctc aagcgttcca tgatgttttt ttccattttg tcgcccggtt taacggcaag
     1381 tgacggcgcg gcgatgtgga tgccgacacg cttcgtgccg ttgtccaagt cggtcaggct
     1441 taaagcgtcg tccacttcgg tggtcgattc gtcgtcaatg gaaaaggcgg taacgtcggc
     1501 cttgggcagg tcgggcattt cgggaagggc aaggtcgggg aagcctgtgc ctttaggaaa
     1561 gtatttgatt tcaaacccgt cttgcaggta ttgcggaatg gacgtaatgc cacccgtttt
     1621 tttcgccaat tcgtaggcgg agattttcag tgcgtcggcg gctttggtaa aggctttgta
     1681 ggtcagcgac tgtttgtcgg gcgcgtgcag gatggttttc aaatccgccg cgatttcaga
     1741 cggcatctcg ccccgtttta aggcttccgc ccaagcgtcg atttgcgcgt cttgctgttt
     1801 tttgcgttcg atggcggcaa gcgcttgttt caaagtttct tcgggcgcgg ctttgaacac
     1861 gcctttggct tttttgtaga aatacatcgg cgcggcgtaa agcgcaatca aggtcgccgc
     1921 cagctcggtt ttggtcggcg catgaccgaa atattcttcg gcgatggctt cggcggaaaa
     1981 ttcttcttcg ccgcatactt cccacaataa atcggtgtcg atgtccgccg cctgtgcctg
     2041 cgcgttttcc aaaaacgccg ccatatcgcc gtcaaactcg gcaaagacat tgtttgcctt
     2101 cactttggtg cgcttgccgt gttgggtatc gacttggtag gtagcgtcgt ttttttggat
     2161 gatggcggcg attttgaatt ggccggactc ttcgtaaaaa atattcattt ttcggatttt
     2221 tctgtggaaa ctcaagcggg cgattttagc agattaccga aaatgccgtc tgaaaaaagg
     2281 ttgggagagg gttggcgcgt ctttgcggtg cttgcgttat agtggattaa caaaaaccag
     2341 tac
//
LOCUS       DAXIFD010000206         2289 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.206, whole genome shotgun sequence.
ACCESSION   DAXIFD010000206 DAXIFD010000000
VERSION     DAXIFD010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.206"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..144
                     /locus_tag="ACFOCN_001934"
     CDS             <1..144
                     /locus_tag="ACFOCN_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HFC6971022.1"
                     /translation="EAEHSLIWNDPTVGIDWPLQGEPNLSPKDLAGKTWAQAEKLRLT
                     LSR"
     gene            complement(188..2206)
                     /locus_tag="ACFOCN_001935"
     CDS             complement(188..2206)
                     /locus_tag="ACFOCN_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HFC6971023.1"
                     /translation="MNKSLSGSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLT
                     FASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGF
                     PFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQG
                     GSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYL
                     VGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDMEMAAFAMKLWKEKVRFIGAGTIGI
                     AAVWTLLMLLKPMVEGMKMSFKSFGGGAPAAERAEQDLSPKAMIFWVLAMMFVLGVSF
                     YHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSV
                     VVISLVLLLVGESGGLLADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLK
                     ATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMT
                     TIASGIFAHNLEWVYIFTGIAIGAVLIAADLVLKKSSGGKLALPVLAVGMGIYLPPSV
                     NMPIVAGAVLAAVLKHIIGKKAENREGRLKNAERIGTLFSAGLIVGESLIGVIMAFII
                     AFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMIIFARRVLKAGR"
BASE COUNT          636 a          704 c          537 g          412 t
ORIGIN      
        1 gaagccgaac actcactaat ttggaatgat ccgaccgtcg gcatcgactg gccgctacaa
       61 ggcgagccga acctgtcgcc caaagacctt gccggcaaaa cgtgggcgca agccgaaaag
      121 ctccgcctta cactttcccg ataaaaaatg ccgtctgaac gtttcagacg gcattttctc
      181 cgacaggcta cctacccgcc ttcagtacgc gccgtgcaaa aataatcatt ccggtaacga
      241 agaacgccaa gcccagccaa gaagcggcgg catcccagtt ttgcagattc aacgcgagcg
      301 gcgcgtccga gccgccgttg gtcacggaga aggcaataat aaacgccata atcacaccaa
      361 tcagactttc accgacaatc agaccggcgg agaacaaggt tccgatgcgc tcggcgtttt
      421 tcagacggcc ttcacggttt tccgcttttt taccgatgat gtgtttcaac accgccgcca
      481 acaccgcgcc tgccacgatg ggcatattga cggacggcgg cagataaata cccataccga
      541 ccgcaaggac gggcagggca agtttgccgc ctgatgattt tttcaacacc aaatcggcgg
      601 caatcaacac cgcgccaatc gcgatgccgg taaagatata gacccattca aggttgtggg
      661 cgaaaatgcc cgacgcgatg gtcgtcatca aagtcgcttg aggggctgcc aaagcctgcg
      721 ccgcatccat gccttcgcgc ggcattgcgc cggtaaagcc gtaggcttcg taaagcagtt
      781 ccaacacggg cgaaataacc agcgcaccaa cgatacagcc gataatcagg gcgacttgct
      841 gccgccaagg cgtggctttg agcaggtagc cggttttcaa gtcttgcagg ttgtcattgg
      901 aaatcgaagc cacgcagatt actgccgagc cgcaaaacaa agtcagtgcc agcaaaaatt
      961 tgcggttagc ctcatccgcc aacaaacctc cggattcgcc taccagcagc aaaaccagtg
     1021 aaataacgac gacggacacg atgcccacgc cggaaatcgg gctggaagac gagccgacca
     1081 aacctgccat ataaccgcag gcggcggcga ccaaaaagcc gatgacggaa gccaaaagcg
     1141 tgcaaacgac caccaaaagc caagccatgc cgcccgtaat gtgcgaatcg ccgataaagt
     1201 ggtaaaacga cacgcctaaa acaaacatca tcgccagcac ccaaaaaatc atagccttag
     1261 gcgacaaatc ctgttcggcg cgttccgcag cgggcgcacc gccgccaaaa ctcttgaacg
     1321 acatcttcat gccttccacc atcggcttga gcagcatcaa cagcgtccaa accgccgcaa
     1381 tgccaatagt ccccgcaccg ataaaacgca ctttctcctt ccacagcttc atcgcaaacg
     1441 ccgccatttc catatcggaa ggttgcggaa tgtgtgagga gaaatacggc acggcaatgc
     1501 cccaagcaat cgaaatgccc aacaggatgg cgataccgcc cgtcagtccg accaaatagc
     1561 ccgcgcccaa caatgccagt gaaaagccca tcggcagctg gaaaatcgcc gtaccgcttt
     1621 taaaccaata actcgcgctg tcggcaatca cgcgcagacc tccggcgcaa aagctcatca
     1681 atcccgccaa cgcaccgccg gccgccagct ctttgatgcc gctgccgccc tgacggttat
     1741 ccccttcttc atgaccgccc actttcaaaa tttcagcagc cgccacacct tccggataag
     1801 gcaaatcgct tttcaccacc atcgcgtaac gcagcggaat ggtgaaaatc acccccaaaa
     1861 tcccgccggc aatacataaa agcgtcgtct gccagaacgg gaaaccgctc cagtagcccg
     1921 ccatcagcaa accgggcagg acgaagatga tggtcgaaag cgtacccgcc gccgaagctt
     1981 gggtctgcac catgttgttt tccaaaatat tgctgccttt gaaaaacttt aaaaccgcca
     2041 tcgaaatcac cgccgccgga atcgacgagg caaaggtcag cccgactttc aaaccgaggt
     2101 aaacgttgga cgcagtaaaa attacagtga tcaatgcacc gagtatcatg cctcggagcg
     2161 tcagttcgcg gtattcttct accgacccgg ataaagattt attcattatt cttcctttga
     2221 caacagacgt tcacatattg ttggcatcgc gccatgatgt caagttttaa aaagaacagt
     2281 taaaaacag
//
LOCUS       DAXIFD010000207         2255 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.207, whole genome shotgun sequence.
ACCESSION   DAXIFD010000207 DAXIFD010000000
VERSION     DAXIFD010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.207"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..846
                     /locus_tag="ACFOCN_001936"
     CDS             <1..846
                     /locus_tag="ACFOCN_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_168458961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HFC6971024.1"
                     /translation="YANSGLSEFSATLNSVFAVQDELDRVFAEDRRNAVWTSGIRDTK
                     HYRSQDFRAYRQQTDLRQIGMQKNLGSGRVGILFSHNRTENTFDDGIGNSARLAHGAV
                     FGQYGIDRFYIGISAGAGFSSGSLSDGIGSKIRRRVLHYGIQARYRAGFGGFGIEPHI
                     GATRYFVQKADYRYENVNIATPGLAFNRYRAGIKADYSFKPAQHISITPYLSLSYTDA
                     ASGKVRTRVNTAVLAQDFGKTRSAEWGVNAEIKGFTLSLHAAAAKGPQLEAQHSAGIK
                     LGYRW"
     gene            complement(955..1677)
                     /locus_tag="ACFOCN_001937"
     CDS             complement(955..1677)
                     /locus_tag="ACFOCN_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6971025.1"
                     /translation="MFPDKYKLSLKENIFLAKKVLVAQIHNLSRFENCQTTLLQTEQI
                     IHGKNVASVSLEDIQTILNLKRAYQYVISHISNGEPVNISLLKKINNIVAKDDSLAPG
                     DFRTGSVGVTLLDGSRHAPNPVKEIEVARVLQNIGLQSGSTTEAAVRFMLYCMRQQVF
                     WDGNKRTATLFANGLMMAGGCGILEISEMQMPQFNEKLSAFYRSGDDTDISKFVYQNC
                     ISGIDYFGTHEDIDFPDPPNMG"
BASE COUNT          540 a          596 c          544 g          575 t
ORIGIN      
        1 tatgccaata gcggtttgag tgaattttcc gccacgctca acagcgtttt cgccgtacag
       61 gacgaattag accgcgtatt tgccgaagac cgccgcaacg ccgtttggac aagcggcatc
      121 cgggacacca aacactaccg ttcgcaagat ttccgcgcct accgccaaca aaccgacctg
      181 cgccaaatcg gtatgcagaa aaacctcggc agcgggcgcg tcggcatcct gttttcgcac
      241 aaccggaccg aaaacacctt cgacgacggc atcggcaact cggcacggct tgcccacggc
      301 gccgttttcg ggcaatacgg catcgacagg ttctacatcg gcatcagcgc gggcgcgggt
      361 tttagcagcg gcagtctttc agacggcatc ggaagcaaaa tccgccgccg cgtgctgcat
      421 tacggcattc aggcacgata ccgcgccggt ttcggcggat tcggcatcga accgcacatc
      481 ggcgcaacgc gctatttcgt ccaaaaagcg gattaccgct acgaaaacgt caatatcgcc
      541 acccccggcc ttgcgttcaa ccgctaccgc gcgggcatta aggcagatta ttcattcaaa
      601 ccggcgcaac acatttccat cacgccttat ttgagcctgt cctataccga tgccgcttcg
      661 ggcaaagtcc gaacgcgcgt caataccgcc gtattggctc aggatttcgg caaaacccgc
      721 agtgcggaat ggggcgtaaa cgccgaaatc aaaggtttca cgctgtccct ccacgctgcc
      781 gccgccaaag gcccgcaact ggaagcgcaa cacagcgcgg gcatcaaatt aggctaccgc
      841 tggtaacacc ggatatgccg aaaggggttt gacgatgccg ccgtgcgctg tcaaaccctt
      901 tttctgccgc cgccttgtgc ctgctccatt gtctgataac cgtcaaattg atttttagcc
      961 catgtttggt gggtcgggga aatctatatc ttcgtgcgtg ccgaaatagt ctatgcccga
     1021 tatacaattt tgatacacaa acttggaaat atcggtatcg tcgccggagc gatagaatgc
     1081 ggacagtttt tcattgaatt gcggcatctg catttcggag atttccaaga tgccgcagcc
     1141 ccccgccatc atcagaccgt tggcaaataa ggttgccgtt cgtttgttgc cgtcccaaaa
     1201 aacctgctgc cgcatacaat aaagcataaa acggacggct gcctccgtcg tcgaaccgct
     1261 ttgcagtccg atattttgta acacgcgggc cacttcaatt tccttcactg gattcggggc
     1321 atgacgggaa ccgtccaata gcgttacgcc gaccgaaccg gtacggaaat caccgggtgc
     1381 caaagaatcg tccttggcaa caatgttgtt gattttttta aggagtgaaa tattgaccgg
     1441 ttcgccattt gaaatatgcg aaatcacata ttgataggca cgtttcaggt tcaagatggt
     1501 ttggatgtct tcaagtgaca cggaggctac atttttgcca tggataattt gttcggtctg
     1561 caataaggtc gtctgacaat tctcaaaacg gctgaggttg tgaatttggg caaccaatac
     1621 tttctttgcc aaaaaaatat tttctttcaa actcaacttg tatttgtcgg gaaacacgat
     1681 aattccttaa ataattaaag cagtacgtta aatcatcatc ttatcatcac tttcggggtt
     1741 tatgttgcat gcgtccgttt tctaatacgg tttcccatcc cgcgaaacga ggcggaggcc
     1801 tgtgcaaaaa acctgttcac gaaattttcc gcattaacga tacgctgaaa atgcgctaaa
     1861 aatgactgtg tttgaatatc ggttgatttc atccgtttgt gtaacctcgc gccggttttg
     1921 tcatgatttt gcattatagt gaattaaatt taaaccagta cagcgttgcc tcgccttgcc
     1981 gtactatctg tactgtctgc ggcttcgtcg ccttgtcctg atttttgtta attcactata
     2041 tttttgtcat gcggatattt cacgggatga caaaacgggc gcaaaaaagc ccgattggaa
     2101 aatccgaatc gggctttttt gtgatgttct gttcgatttg cgtactaact gccggccgga
     2161 gcgtccgcgc ccggtttggc aggtcggatt ctcgaatccg acggctattt gagatggcag
     2221 gcttttgtcg gatacaagta tccgacctac ggctt
//
LOCUS       DAXIFD010000208         2200 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.208, whole genome shotgun sequence.
ACCESSION   DAXIFD010000208 DAXIFD010000000
VERSION     DAXIFD010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.208"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..192
                     /locus_tag="ACFOCN_001938"
     CDS             <1..192
                     /locus_tag="ACFOCN_001938"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971026.1"
                     /translation="RFHVLDSRLRGNDEILSWGNLSENPQPPKTGRMPHHPPPNPDLT
                     IQTNQKKKQNEQNIPHHLE"
     gene            161..1930
                     /locus_tag="ACFOCN_001939"
     CDS             161..1930
                     /locus_tag="ACFOCN_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HFC6971027.1"
                     /translation="MNKIYRIIWNSALNAWVVVSELTRNHTKRASATVATAVLATLLS
                     ATVQANATDTDEDEELESVVRSALVLQFMIDKEGNGEIESTGDIGWSIYYDDHNTLHG
                     ATVTLKAGDNLKIKQSGKDFTYSLKKELKDLTSVETEKLSFGANGNKVNITSDTKGLN
                     FAKETAGTNGDPTVHLNGIGSTLTDTLAGSSASHVDAGNQSTHYTRAASIKDVLNAGW
                     NIKGVKTGSTTGQSENVDFVRTYDTVEFLSADTKTTTVNVESKDNGKRTEVKIGAKTS
                     VIKEKDGKLVTGKGKGENGSSTDEGEGLVTAKEVIDAVNKAGWRMKTTTANGQTGQAD
                     KFETVTSGTKVTFASGNGTTATVSKDDQGNITVKYDVNVGDALNVNQLQNSGWNLDSK
                     AVAGSSGKVISGNVSPSKGKMDETVNINAGNNIEITRNGKNIDIATSMTPQFSSVSLG
                     AGADAPTLSVDDEGALNVGSKDANKPVRITNVAPGVKEGDVTNVAQLKGVAQNLNNRI
                     DNVDGNARAGIAQAIATAGLAQAYLPGKSMMAIGGGTYRGEAGYAIGYSSISDTGNWV
                     IKGTASGNSRGHFGTSASVGYQW"
     gene            2063..>2200
                     /locus_tag="ACFOCN_001940"
     CDS             2063..>2200
                     /locus_tag="ACFOCN_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6971028.1"
                     /translation="MSTFFQQTAQAMIAKHINRFPLLKLDQVIDWQPIEQYLNRQKTR
                     YL"
BASE COUNT          652 a          533 c          551 g          464 t
ORIGIN      
        1 agattccacg tcctagattc ccgccttcgc gggaatgacg agattttaag ttgggggaat
       61 ttatcagaaa acccccaacc cccaaaaacc gggcggatgc cgcaccatcc gcccccaaac
      121 cccgatttaa ccattcaaac aaaccaaaag aaaaaacaaa atgaacaaaa tataccgcat
      181 catttggaat agtgccctca atgcctgggt agtcgtatcc gagctcacac gcaaccacac
      241 caaacgcgcc tccgcaaccg tggcgaccgc cgtattggcg acactgctgt ccgcaacggt
      301 tcaggcgaat gctaccgata ccgatgaaga tgaagagtta gaatccgtag tacgctctgc
      361 tctggtgttg caattcatga tcgataaaga aggcaatgga gaaatcgaat ctacaggaga
      421 tataggttgg agtatatatt acgacgatca caacactcta cacggcgcaa ccgttaccct
      481 caaagccggc gacaacctga aaatcaaaca aagcggcaaa gacttcacct actcgctgaa
      541 aaaagagctg aaagacctga ccagtgttga aactgaaaaa ttatcgtttg gcgcaaacgg
      601 taataaagtc aacatcacaa gcgacaccaa aggcttgaat tttgcgaaag aaacggctgg
      661 gacgaacggc gaccccacgg ttcatctgaa cggtatcggt tcgactttga ccgatacgct
      721 tgcgggttct tctgcttctc acgttgatgc gggtaaccaa agtacacatt acactcgtgc
      781 agcaagtatt aaggatgtgt tgaatgcggg ttggaatatt aagggtgtta aaactggctc
      841 aacaactggt caatcagaaa atgtcgattt cgtccgcact tacgacacag tcgagttctt
      901 gagcgcagat acgaaaacaa cgactgttaa tgtggaaagc aaagacaacg gcaagagaac
      961 cgaagttaaa atcggtgcga agacttctgt tattaaagaa aaagacggta agttggttac
     1021 tggtaaaggc aaaggcgaga atggttcttc tacagacgaa ggcgaaggct tagtgactgc
     1081 aaaagaagtg attgatgcag taaacaaggc tggttggaga atgaaaacaa caaccgctaa
     1141 tggtcaaaca ggtcaagctg acaagtttga aaccgttaca tcaggcacaa aagtaacctt
     1201 tgctagtggt aatggtacaa ctgcgactgt aagtaaagat gatcaaggca acatcactgt
     1261 taagtatgat gtaaatgtcg gcgatgccct aaacgtcaat cagctgcaaa acagcggttg
     1321 gaatttggat tccaaagcgg ttgcaggttc ttcgggcaaa gtcatcagcg gcaatgtttc
     1381 gccgagcaag ggaaagatgg atgaaaccgt caacattaat gccggcaaca acatcgagat
     1441 tacccgcaac ggcaaaaata tcgacatcgc cacttcgatg accccgcaat tttccagcgt
     1501 ttcgctcggc gcgggggcgg atgcgcccac tttaagcgtg gatgacgagg gcgcgttgaa
     1561 tgtcggcagc aaggatgcca acaaacccgt ccgcattacc aatgtcgccc cgggcgttaa
     1621 agagggggat gttacaaacg tcgcacaact taaaggtgtg gcgcaaaact tgaacaaccg
     1681 catcgacaat gtggacggca acgcgcgcgc gggtatcgcc caagcgattg caaccgcagg
     1741 tttggctcag gcctatttgc ccggcaagag tatgatggcg atcggcggcg gtacttatcg
     1801 cggcgaagcc ggttacgcca tcggctactc gagcatttct gacactggga attgggttat
     1861 caagggcacg gcttccggca attcgcgcgg tcatttcggt acttccgcat ctgtcggtta
     1921 tcagtggtaa gggctttttc gcctgtctgc tgttggggca ggcggaaggt ttgaagggaa
     1981 gggtggcgat ttgccgcctg agacctttgc aaaattcccc aaaatcccct aaattcccac
     2041 caagacattt aggggatttt ccatgagcac cttcttccag caaaccgccc aagccatgat
     2101 tgccaaacac atcaaccgct tcccgctatt gaagttggac caggtgattg attggcagcc
     2161 gatcgaacag tacctgaacc gtcaaaaaac ccgttacctt
//
LOCUS       DAXIFD010000209         2182 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.209, whole genome shotgun sequence.
ACCESSION   DAXIFD010000209 DAXIFD010000000
VERSION     DAXIFD010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.209"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            295..807
                     /locus_tag="ACFOCN_001941"
     CDS             295..807
                     /locus_tag="ACFOCN_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HFC6971029.1"
                     /translation="MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAAAA
                     GVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVV
                     YLHAPPEILLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRET
                     VQTLLKRLSR"
     gene            887..1966
                     /gene="aroB"
                     /locus_tag="ACFOCN_001942"
     CDS             887..1966
                     /gene="aroB"
                     /locus_tag="ACFOCN_001942"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HFC6971030.1"
                     /translation="MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANET
                     VAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIAL
                     GGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQP
                     QAVLADLDTLHTLPARELSAGMAEVIKYGALGDIGFFEWLEQHMPELMTLDREKLAQA
                     VYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAA
                     RLSEQLGKTSAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGL
                     NRLGEANITEITDTDILRRTLQPYL"
BASE COUNT          527 a          679 c          534 g          442 t
ORIGIN      
        1 ttgataaaca tattatcttc aatatattca attggataat tgtttaccta agcaaagata
       61 attgcctttt cctgacaaat aagtgaaatc aacggattgt caaaacacag cctgaaataa
      121 aaaacctccc tgatttcttt tatttgtcct taaaatcaga aaggttcggg atggtcgggt
      181 tatttttcca aacgtaccgc cgccctgccg atttcgtata aaattccgcc gtaacccgac
      241 aagcccgaac cctgtcgccc cgaaaggcgg ggtgtcaaac attaaggaat tgtgatgaaa
      301 aactttaacg gcaaactcat cctcatcgga ctgatgggcg cgggcaaaac cacgctgggc
      361 cggcaaatgg cgcagcggct ggattaccgt ttttacgaca gcgatcacga aatcgccgca
      421 gccgccggcg ttcccatccc caccatattt gaaatggaag gcgaacaggg attccgttcg
      481 cgcgaaaccg ccatactcaa aaagctggtt atcctgcccc atatcgtcct gtccaccggc
      541 ggcggcgcgg tgttaaaaga agaaaaccgc gcccttatcc gcaaaagcgg cacggtcgtc
      601 tatctgcacg ccccgcccga aatcctgctc gaacgcacgc gctgcgacaa cagccgtcct
      661 ttgctgcaag ttgccgatcc tttggcgaaa ttacgtgaac tctacgccgc acgcgacccc
      721 gtttaccgcc aaaccgccga ctttaccgta gaatcggcaa actgccggga aaccgtgcaa
      781 accctgctca aacgcttatc ccgataaacc ggcatatgcg ccgcgcccag aaaaccaaac
      841 cgcgccccgc ccggcgggcc ggcggttcaa actttaagga acaacaatga aaacactgac
      901 cgtacacacc ccgtcccaca gctaccccat ctttatcggc aacggactgc tgccgcaggc
      961 aggaagcctg ctcaaaccgc atttgggcaa acgcgccgcc atcatcgcca acgaaaccgt
     1021 cgccccgctc tacctcggca cgcttcagac ggcattggat gcggcaggcg tatcccattt
     1081 cagcatcatc ctgcccgacg gcgaggcgca caaaaactgg cagacgctca acctcatctt
     1141 tgacgggctg atgcaaaacc gcgccgaacg caaaaccaca ttaatcgcac tgggcggcgg
     1201 cgtgatcggc gacatggtcg gctttgccgc tgccacctac cagcgcggcg caccgttcgt
     1261 tcaaataccg accacactgt tgagtcaggt cgactcatcg gtgggcggca aaaccgccat
     1321 caaccacccg ctcggcaaaa atatgattgg cgcgttttac cagccgcagg cggtgcttgc
     1381 cgacttggac acgctgcaca ccctgcccgc ccgcgaattg tccgccggta tggcggaagt
     1441 catcaaatac ggcgcgctcg gcgacatcgg cttttttgaa tggctggaac agcatatgcc
     1501 cgaactgatg acgctcgatc gggaaaaact cgcccaagcc gtgtaccgct gctgccaaat
     1561 gaaggcagac atcgtcgccc aagacgaaac cgaacagggc atacgcgcat ggctcaacct
     1621 cggacacacc ttcggacacg ccattgaaac cgagatgggt tacggcactt ggctgcatgg
     1681 agaagccatc gccgccggct gcgtgttggc ggcgcgtttg tccgaacaac tgggcaaaac
     1741 ctccgccgca gataccgcgc ggctcgccgc cctgctcgaa gccgccggac tgccgtccgc
     1801 gccacccgtg tttgcctttg aaaaatggct ggaacacatg agccacgata aaaaagtcag
     1861 cggcggcatc atgcgcttta tcggtctgaa ccggctgggc gaagccaaca tcaccgaaat
     1921 taccgacacg gacatcctcc gccgcaccct gcaaccgtat ctctgatttc ctctgccgat
     1981 gtgctgccgc gcgggtttga cgcacgatga tgattttcca tcatctttct ccgcaaaagc
     2041 gggaatccag tccgttcggt ttcggtcgtt tccgataagt tcccgttgct tttcatttct
     2101 agattcccac tttcgcagga atgacggtgg aaaggttttt gttgtttcgg agaagtttct
     2161 gcaaccctag aatctcgtta tt
//
LOCUS       DAXIFD010000210         2178 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.210, whole genome shotgun sequence.
ACCESSION   DAXIFD010000210 DAXIFD010000000
VERSION     DAXIFD010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.210"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            53..547
                     /locus_tag="ACFOCN_001943"
     CDS             53..547
                     /locus_tag="ACFOCN_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971031.1"
                     /translation="MENRFKKIVKDILSFAQFVSEAENKIPNQSSRYYDCWWELEILN
                     ASALEDWEISGKPEKWEKWTEKYQTEALQSVKHLFAEEVPENNIVCDISHFLHFADWA
                     EADIPNQSRLYAEYWWEMEMFKMSVLEDWERSGKPLDWKKWQRQYRSEAFELVKKLNR
                     SKQE"
     gene            667..1800
                     /locus_tag="ACFOCN_001944"
                     /pseudo
     CDS             667..1800
                     /locus_tag="ACFOCN_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231803.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1887..2162)
                     /locus_tag="ACFOCN_001945"
     CDS             complement(1887..2162)
                     /locus_tag="ACFOCN_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971032.1"
                     /translation="MNEGEVVLTPEQIQTLRGYAFRGDTYGGWRYLANLGDRYADDAA
                     AIVGKDTNLNGLNLWMKKGVENLWDDTVGKKTRLMCISVFWIVVFNL"
BASE COUNT          641 a          412 c          548 g          577 t
ORIGIN      
        1 ccgtgtttga tttttgacga cattttcctc attggagggg cggcaattat ttatggaaaa
       61 tagatttaaa aaaatcgtta aggatattct tagttttgcc caatttgttt ccgaagcgga
      121 aaataaaatt cctaaccaat cctctcgtta ttacgattgc tggtgggaat tggaaatctt
      181 gaatgcttcc gcattggaag attgggaaat atcgggaaag cctgaaaaat gggagaaatg
      241 gacagaaaaa tatcagaccg aagcgttaca gtcagtcaag catctatttg ccgaagaagt
      301 tcctgaaaat aatatagttt gcgatatttc tcattttttg cattttgccg attgggcaga
      361 agccgacatt cccaatcaat cacgtttata tgccgaatat tggtgggaaa tggaaatgtt
      421 caaaatgtcg gttttagaag attgggaacg ctcgggaaaa ccgttagatt ggaaaaaatg
      481 gcaaaggcaa tatcgatctg aagcatttga attagttaaa aaattgaacc gaagcaaaca
      541 agagtaacaa gccgcagcct gcataagggt ttttaaagta cggcagcaac cgtagattaa
      601 attaaaaatc aaacaatcaa agctcgtctg atataatcga tatattctgt taaacgaaaa
      661 ataaatatgt ttaaaaaatt caaaccggta ctgttgtcat tttttgcact tgtatttgcc
      721 ttttggctgg gaacgggtat tgcctatgag attaatccgc gttggttttt gagcgatacg
      781 gcaactgaag tacctgaaaa tccgaatgct tttgtggcga aacttgcccg cctgttccga
      841 aatgccgaca gggcggttgt catcgtgaag gaatcgatga ggacggagga aagtcttgcc
      901 gaaactgtgg atgacggtcc gttgcagtcg gagaaggatt atctcgcgct cgctatccgg
      961 ctcagtcgtt tgaaagaaaa ggcgaaatgg tttcacgtaa cggagcagga acatggggaa
     1021 gaggtttggc tggattacta tatcggcgag ggcggtttgg ttgcggtttc gcttttgcaa
     1081 cgctcgccgg aagcgtttgt taatgccgaa tatctgtatc ggaacgatcg tccgttttct
     1141 gtaaatgtgt acggcggaac ggctcacagg gaaaattatg aaacgacagg agaatatcgg
     1201 gttgtttggc aaccggacgg ttcggtattt gatgcggcag ggcgcgggaa aatcggggaa
     1261 gatgtttatg agcattgcct cgggtgttat cagatggccc aggtatattt ggcgaaatac
     1321 cgggatgtcg cgaatgatga gcagaaggtt tgggacttcc gcgaagagag caaccggatt
     1381 gcatcggact cgcgcgatta tgtgttttat cagaatatgc gggaattgat gccccggggg
     1441 atgaaggcaa acagtcttgt ggtcggctat gatgcggatg gtctgccgca gaaagtctat
     1501 tggagtttcg acaatggaaa aaaacgctag agtttcgaat attatttgaa aaacggaaat
     1561 ctttttattg cacaatcttc gacggtagca ttgaaagcgg atggcgtaac ggcggatata
     1621 cagacctatc atgcgcaaca gacgtggtat ttggatggcg ggcggattat ccgcgaagag
     1681 aaacagggag acagactgcc tgattttcct ttgaacttgg aaaatttgga aaaagaggtg
     1741 cgccgttatg cagaggctgc ggcgagacgt tcgggcggca ggcgcgacct ttctcactga
     1801 acgcaaatgc cgtctgaaac cggttttcag acggcattgg agagtcaaac gctttttgca
     1861 atgccgtata tgccgaatcc gattcgctac aaattgaaaa caacaatcca aaaaacggaa
     1921 atacacatta aacgggtctt tttaccgacc gtatcatccc ataggttttc cacacctttt
     1981 ttcatccata aattcaaacc atttaagttt gtatccttac cgacaattgc agcagcatca
     2041 tccgcataac ggtcacccaa attagccaaa taacgccaac cgccataggt atcgccacgg
     2101 aaagcataac cacgcaaggt ttggatttgt tctggtgtta aaacaacttc accctcattc
     2161 ataataagat cctttaaa
//
LOCUS       DAXIFD010000211         2170 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.211, whole genome shotgun sequence.
ACCESSION   DAXIFD010000211 DAXIFD010000000
VERSION     DAXIFD010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.211"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            99..1910
                     /gene="typA"
                     /locus_tag="ACFOCN_001946"
     CDS             99..1910
                     /gene="typA"
                     /locus_tag="ACFOCN_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HFC6971033.1"
                     /translation="MKQIRNIAIIAHVDHGKTTLVDQLLRQSGTFRANQQVDERVMDS
                     NDLEKERGITILAKNTAIDYEGYHINIVDTPGHADFGGEVERVLGMVDCVVLLVDAQE
                     GPMPQTRFVTKKALALGLKPIVVINKIDKPSARPSWVIDQTFELFDNLGATDEQLDFP
                     IVYASGLSGFAKLEETDESSDMRPLFDTILKHTPAPSGSADEPLQLQISQLDYDNYTG
                     RLGIGRILNGRIKPGQTVAVMNHEQQIAQGRINQLLGFKGLERVPLEEAEAGDIVIIS
                     GIEDIGIGVTITDKDNPKGLPMLSVDEPTLTMDFMVNTSPLAGTEGKFVTSRQIRDRL
                     QKELLTNVALRVEDTADADVFRVSGRGELHLTILLENMRREGYELAVGKPRVVYRDID
                     GQKCEPYENLTVDVPDDNQGAVMEELGRRRGELTNMESDGNGRTRLEYHIPARGLIGF
                     QGEFMTLTRGVGLMSHVFDDYAPVKPDMPGRHNGVLVSQEQGEAVAYALWNLEDRGRM
                     FVSPNDKIYEGMIIGIHSRDNDLVVNPLKGKKLTNIRASGTDEAVRLTTPIKLTLEGA
                     VEFIDDDELVEITPQSIRLRKRYLSELERRRHFKKLD"
     gene            complement(1930..>2170)
                     /locus_tag="ACFOCN_001947"
     CDS             complement(1930..>2170)
                     /locus_tag="ACFOCN_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971034.1"
                     /translation="LPKLVRTQKAYSFKRHCSTCCREAEPDTETRRGDMPLEKWRQFL
                     DWVGKTPSETASRSRKARPNKKCRLNFFQTASSII"
BASE COUNT          544 a          630 c          569 g          427 t
ORIGIN      
        1 gcaagggctt cagacggcat cttcatttcc caaatactgt ccggtaaagc gtggtataat
       61 gcgcagttat ctcttacagt ttttgaaaaa cattaattat gaaacaaatc cgcaacatcg
      121 ccatcatcgc ccacgtcgac cacggcaaaa ccacattggt cgaccaactg ctgcgccaat
      181 ccggcacatt ccgcgccaac cagcaggttg acgagcgcgt gatggacagc aacgacctcg
      241 aaaaagaacg cggcatcacc atcctcgcca aaaacaccgc catcgattac gaaggctacc
      301 acatcaatat cgtcgatacg ccgggacacg ccgacttcgg cggcgaagta gagcgcgttt
      361 tggggatggt ggactgcgtc gtcttgttgg tggacgcgca ggaaggcccg atgccgcaaa
      421 cccgtttcgt gaccaaaaaa gccttggctt tggggctgaa accgattgtc gtcatcaata
      481 aaatcgacaa gccgtctgca cgtccgagct gggttatcga ccaaactttc gagctgttcg
      541 acaacttggg cgcgaccgac gagcagttgg atttcccgat tgtttacgct tcaggtttga
      601 gcggctttgc caagctggaa gaaaccgacg agagcagcga tatgcgcccg ctgttcgaca
      661 ccatcttaaa acacacgccc gcaccgagcg gcagcgcgga cgagccgctg caactgcaaa
      721 tttcccaact cgactacgac aactacaccg gccgcctcgg catcggtcgt atcttgaacg
      781 gacgcatcaa acccggccaa accgttgccg tcatgaacca cgagcagcaa atcgcccaag
      841 gccgcatcaa ccagcttttg ggtttcaaag gcttggaacg cgtaccgctt gaagaagccg
      901 aagccggcga catcgtgatt atttccggta tcgaagacat cggcatcggc gtaaccatca
      961 ccgacaaaga caaccccaaa ggcctgccga tgttgagcgt ggacgaaccg acgctgacga
     1021 tggactttat ggtcaacacc agcccgctgg cgggtacgga aggcaaattc gtaaccagcc
     1081 gccaaatccg cgaccgcctg caaaaagaat tgctgaccaa cgtcgccctg cgcgtggaag
     1141 acaccgccga tgccgacgtg ttccgcgtat ccggacgcgg cgagctgcac ctgaccattt
     1201 tgttggaaaa tatgcgccgc gaaggctacg aactcgccgt cggcaaaccg cgcgtcgtgt
     1261 accgcgacat cgacggtcaa aaatgcgaac cttatgaaaa cctgaccgtg gacgtacccg
     1321 acgacaacca aggcgcggta atggaagaac tcggccgccg ccgtggcgaa ctgactaata
     1381 tggaaagcga cggcaacgga cgcacccgcc tcgaatacca tattccagcg cgcggcttga
     1441 tcggtttcca aggcgaattt atgaccctga cgcgcggggt cgggctgatg agccacgtgt
     1501 tcgacgatta cgcgcccgtc aaacccgata tgcccggccg ccacaacggc gtgctggtgt
     1561 cccaagagca gggcgaggca gtcgcttacg ccttgtggaa tctggaagac cgcggccgta
     1621 tgttcgtatc gcccaacgac aaaatctacg aaggtatgat tatcggcatc cacagtcgcg
     1681 acaacgattt ggtggtcaac ccgctcaaag gcaaaaaact taccaacatc cgtgccagcg
     1741 gtaccgacga agccgttcgc ctgaccacgc cgattaagct gacgctggaa ggtgcggtcg
     1801 agtttatcga cgatgatgag ctggtagaaa tcacgccgca atccatccgc ctgcgcaagc
     1861 gttacctgag cgaattggaa cgccgccgcc atttcaaaaa gctagattga tgtttactgg
     1921 atttaatgtt taaatgatac tcgatgccgt ctgaaaaaag ttcagacggc attttttatt
     1981 cggacgggct ttgcggcttc ttgaagctgt ttcagacggc gtttttccta cccaatcaag
     2041 aaactgccgc catttttcca gcggcatatc gccccgtcgc gtttcggtat cgggttcggc
     2101 ttcccggcag catgtcgaac aatgccgttt gaaggaatac gccttttgag tccttacaag
     2161 cttaggaaga
//
LOCUS       DAXIFD010000212         2127 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.212, whole genome shotgun sequence.
ACCESSION   DAXIFD010000212 DAXIFD010000000
VERSION     DAXIFD010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.212"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(45..368)
                     /locus_tag="ACFOCN_001948"
     CDS             complement(45..368)
                     /locus_tag="ACFOCN_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6971035.1"
                     /translation="MDMVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVL
                     IVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKARLVKHLGNLDNSTAEKLFAVL
                     QEMFA"
     gene            complement(356..595)
                     /locus_tag="ACFOCN_001949"
     CDS             complement(356..595)
                     /locus_tag="ACFOCN_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="growth regulator"
                     /protein_id="HFC6971036.1"
                     /translation="MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCP
                     TVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW"
     gene            complement(718..1515)
                     /gene="truA"
                     /locus_tag="ACFOCN_001950"
     CDS             complement(718..1515)
                     /gene="truA"
                     /locus_tag="ACFOCN_001950"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HFC6971037.1"
                     /translation="MDTAQKQRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQI
                     AGEAVSTTVAGRTDTGVHATAQVVHFDTTAARPQQAWVRGVNAHLPEGIAVLHARQVA
                     PEFHARFDAYGRHYRYLLESVPVRSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFS
                     SFRAAECQAKSPVKTIYRADLTQSSGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLS
                     VEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL"
BASE COUNT          488 a          499 c          601 g          539 t
ORIGIN      
        1 aagttaatcc actataatga acacaatcaa ttcagactat tcaatcaggc aaacatctcc
       61 tgcaatactg caaacagttt ttcagccgta ctgttgtcta aatttccaag atgcttgacc
      121 aatctggctt tatccacagc cctaatctgt tcgggcaaaa gcaaaccgtc tttatcctga
      181 aagcggacat tgacgcggaa cggggcagga cggcttccgc tcgtcatagg aacgatcagc
      241 acagtcttga gatagttgtg tatttcagga ggagatacta cgacacaagg acgtgtcttt
      301 ttgatttcgc ttcctacggt cgggtctaag gagaccagat agattccgcc gcgtactacc
      361 atatccattc tttatccgct tcgttttcaa tttcggaaaa aaaatgctcc tgctcggttt
      421 cgacaagcat tgcggcagct tctgcccatc ccctgcgaac ggtaggacag cttaaaatga
      481 tattgccctt ttcaactgta acagccaagc tgtctactgc ccctatttga cccaataatg
      541 atttgggcag aatcacgcct tgcgagtttc ccattttgcg tatgttgaga atcatatacg
      601 taccatattc accagtttat gtaataacaa tgttagtacc ttgatgaggt agtgtcaaca
      661 ttgaaaaaga ttgcctgaca gtttgtccga tttcaaaatc tccgcgacaa gaatgtttta
      721 aagccattcg gggatttggg ggcggatgat gccgtatgcc tcgggatagt cgacgccggt
      781 caggtaaagt ccgtcgggca tgaaggtcgg cggggctttg aggcggctgc gttcttgaat
      841 cagtgcggcg aagccttcga cgctgagtct gccgctgccg acatagacga gcgcgcccat
      901 gatgttgcgt accatatggt gcaaaaaggc gttgccgtgc aaatcgaggc ggacgagtcc
      961 tgagctttgg gtaaggtcgg cgcggtagat ggttttgacg ggggattttg cctggcattc
     1021 ggcggcgcgg aagctggaga agtcttgttc gccgatcaat aaggcggcag cccggcgcat
     1081 cggcccgatg tcgagtttga ggtgtgtcca gcctgccctg tttttgagca ggggggaacg
     1141 gacggggacg gattcgagca ggtagcggta atgccgtccg tatgcgtcga agcgggcgtg
     1201 aaattcgggg gcgacctgtc gggcgtgcaa aacggcaatg ccttcgggca ggtgggcatt
     1261 tacgccgcgc acccatgcct gttggggacg ggcggcagtt gtgtcgaagt ggacgacttg
     1321 ggcggtggca tgcacgccgg tgtcggtcct gccggcaacg gtggtggaaa ccgcttcccc
     1381 tgctatttgg gcgagcgcgg tttccaatgc cgcctgaacg gtcggtacgc cgtcagcctg
     1441 tttctgccag ccgtaaaagc ggctgccatc ataggatagg gttattgccc agcgttgttt
     1501 ttgtgcggta tccatcggat ttgggattcg gataaatgtt cagactgcat tgtatcgcag
     1561 attttgcagg gaaacggcaa atgcccgggg cgcgcggcgt tgtttgggga gttggggggg
     1621 ggatgcagtt gctacgaatc gctatcctgt gaattcaccc tgtcaggagt gcccgaatcg
     1681 tcattcccgc gcagtcggga atctaggacg taaaatctaa agaaaccatt ttatagtgga
     1741 ttaacaaaaa ccagtacggc gttgcctcgc cttagctcaa agagaatgat tctctaaggt
     1801 gctgaagcac gagtgaatcg gttccgtatt atttgtactg tctgcggctt cgtcgccttg
     1861 tcctgatttt tgttaatcca ctatatccga taagtttccg caccgacaaa actagattcc
     1921 cactttcgtg ggaatgacgg gatgcaggtt cgtgggaatg acgcgaacag aaacctcaaa
     1981 tcccgtcatt cccgcgcagg cgggaatcta gaccttagaa caacagcaat attcaaagat
     2041 tatctgaaag tctgggattc tggattccca ctttcgtggg aatgacggaa tgtaggttcg
     2101 taggaatgac gggatgcagg tttccgt
//
LOCUS       DAXIFD010000213         2124 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.213, whole genome shotgun sequence.
ACCESSION   DAXIFD010000213 DAXIFD010000000
VERSION     DAXIFD010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.213"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            122..1507
                     /locus_tag="ACFOCN_001951"
     CDS             122..1507
                     /locus_tag="ACFOCN_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HFC6971038.1"
                     /translation="MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSL
                     LTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIR
                     MFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFS
                     VMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVP
                     ELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTA
                     KIIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGG
                     VLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVAAA
                     GFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIG
                     FALSALLFSIV"
     gene            1527..2045
                     /locus_tag="ACFOCN_001952"
     CDS             1527..2045
                     /locus_tag="ACFOCN_001952"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase, GntK/IdnK-type"
                     /protein_id="HFC6971039.1"
                     /translation="MTTHFVVMGVCGCGKTTAALSLQKHLGQCPYAEGDEFHTQANRD
                     KMGAGIPLTDEDRYPWLGNLRDWMTQQAQNGANHTIVTCSALKRGYRDILRGAEGKAA
                     FIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEA
                     DILNWVASENLL"
BASE COUNT          446 a          645 c          571 g          462 t
ORIGIN      
        1 ttcaaataaa caggaatata acttcagaca aacaacttac cgcccgattt gtgctatcgt
       61 tttcgcacaa cttaaaaaac ctgacaattt tgtactttta ttacagagaa aggctttaca
      121 aatggacggc tggacacaga cgctgtccgc gcaaaccctg ttgggcattt cggcggcggc
      181 aatcatcctc attctgattt taatcgtcaa attccgcatc cacgcgctgc tgacactggt
      241 catcgtcagc ctgctgacgg ctttggcaac cggtttgccc acaggcagca ttgtcaacga
      301 cgtactggtc aaaaacttcg gcggcacgct cggcggcgtg gcgcttctgg tcggcctggg
      361 cgcaatgctc ggacgtttgg tcgaaacatc cggcggcgca cagtcgctgg cggacgcgct
      421 gatccggatg ttcggcgaaa aacgcgcacc gttcgcgctg ggcgttgcct cgctgatttt
      481 cggcttcccg attttcttcg atgccggact aatcgtcatg ctgcccatcg tgttcgccac
      541 cgcacggcgc atgaaacagg acgtactgcc cttcgcgctt gcctccatcg gcgcattttc
      601 cgtcatgcac gtcttcctgc cgccccatcc gggcccgatt gccgcttccg aattttacgg
      661 cgcgaacatc ggccaagttt tgattttggg tctgccgacc gccttcatca catggtattt
      721 cagcggctat atgctcggca aagtgttggg gcgcaccatc catgttcccg ttcccgaact
      781 gctcagcggc ggcacgcaag acaacgacct gccgaaagaa cctgccaaag caggaacggt
      841 cgtcgccatc atgctgattc ccatgctgct gattttcctg aataccggcg tatcggccct
      901 catcagcgaa aaactcgtaa gtgcggacga aacctgggtt cagacggcaa aaataatcgg
      961 ttcgacaccg atcgcccttc tgatttccgt attggtcgca ctgtttgtct tgggacgcaa
     1021 acgcggcgaa agcggcagcg cgttggaaaa aaccgtggac ggcgcactcg cccccgtctg
     1081 ttccgtgatt ctgattaccg gcgcgggcgg tatgttcggc ggcgttttgc gcgcttccgg
     1141 catcggcaag gcactcgccg acagcatggc ggatttgggc attcccgtcc ttttgggctg
     1201 tttccttgtc gccttggcac tgcgtatcgc gcaaggttcg gcaaccgtcg ccctgaccac
     1261 cgctgccgcg ctgatggctc ctgccgttgc cgccgccggc tttaccgact ggcagctcgc
     1321 ctgtatcgta ttggcaacgg cggcaggttc ggtcggttgc agccacttca acgactccgg
     1381 cttctggctg gtcggccgcc tcttggacat ggacgtaccg accacgctga aaacctggac
     1441 ggtcaaccaa accctcatcg cactcatcgg ctttgccttg tccgcactgc tgttctccat
     1501 cgtctgacag acggaaagga tagtaaatga ctacgcattt tgtcgttatg ggcgtatgcg
     1561 gctgcggcaa gaccaccgcc gcgctgtccc tgcagaaaca cctcggtcaa tgtccctatg
     1621 ccgaaggcga cgagttccac acccaagcca accgcgacaa gatgggcgcg ggtattccgc
     1681 tgaccgatga agaccgctat ccgtggttgg gcaatctgcg cgactggatg acgcaacagg
     1741 cgcaaaacgg tgcgaaccac accatcgtaa cctgttccgc cctcaaacgc ggctaccgcg
     1801 acattctgcg cggagccgaa ggcaaagctg ccttcatcca cctcagtccg ccgcaagaca
     1861 tcaacctcga gcgcatgatg tcgcgcaaag gacattatat gaaagcaggg atgctcgatt
     1921 cgcaactgga aatcctcgag gaactgggcg aaggcgaata cggggtcaaa atcgccaacc
     1981 ccggcacgcc cgaagcggtc gaagccgata ttctgaactg ggttgcctcg gaaaacctgc
     2041 tttgaagcaa tatgccgtct gaagcccgac acaggatggg tttcagacgg cataaacatc
     2101 gggaacagaa tggattacat tgat
//
LOCUS       DAXIFD010000214         2016 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.214, whole genome shotgun sequence.
ACCESSION   DAXIFD010000214 DAXIFD010000000
VERSION     DAXIFD010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.214"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(96..266)
                     /locus_tag="ACFOCN_001953"
     CDS             complement(96..266)
                     /locus_tag="ACFOCN_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971040.1"
                     /translation="MLLYRLLGGAEIECGRCPVPPMTDWQHFLPAMGTVSAWVAVIWA
                     YLIIESEKNGRY"
     gene            423..>2016
                     /locus_tag="ACFOCN_001954"
     CDS             423..>2016
                     /locus_tag="ACFOCN_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HFC6971041.1"
                     /translation="MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRT
                     LAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQE
                     QLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYKLYQLTQNNAQQNLLGFEAPEVLWD
                     SKPKPEELKLLHDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRP
                     ECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALS
                     RFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAE
                     EPSLSLGPSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAVAVRSLLKHVIGLNDALS
                     AARREKEQDGALLDRLTGDFGIFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADD
                     KNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTT
                     LALKSPFDFEKQGELYIPPIYAS"
BASE COUNT          489 a          661 c          493 g          373 t
ORIGIN      
        1 gcacatcctg tcgccggtat tccctaagcg gtacggcaac ctaaaacaaa tgccgtctga
       61 acttccgttt cagacggcat ttttatacgg actactcaat atcttccgtt tttttcactt
      121 tcaataatca gatatgccca aatcaccgcc acccaagccg acaccgttcc catcgccggc
      181 aaaaaatgct gccaatccgt catcggcggc acagggcaac ggccgcattc gatttccgcg
      241 ccgcccaaca accggtacag caacatatcc gcaatccaaa gcaacaacgg gtatttcaaa
      301 cgctgcaacc aaaaaaccaa ccacgtccgc acgattcacc tcacccccca ttccgacaac
      361 gatattgtac cgcttccgtg caatgttaaa ataagcccac ttctaccgcc gtacaaaacg
      421 ccatgctcac cgatttagaa aaaaacgcca tccgcgacca ttaccaaaac atcggcaaaa
      481 acctgcccgg tttccgtccg cgcgcttcgc agcgggaaat gattgcggcg gttgccaacg
      541 ctttttcgcg gacgttggcg cgcgaagaag gcggcgagcc gcccaagcgc gagggcgaga
      601 gcatcgccgt aatcgaaggg ccgaccggcg tgggcaaatc gcttgcctac ctgctggcgg
      661 gcggcatcat ggcgcagacg cgcggcaagc ggctgattgt gagcagcgca acggttgcct
      721 tacaggagca gttggttgac cgcgacctgc cgtttctggt cgaaaaaagc ggtttggaac
      781 tgaccttcgc gcttgccaaa gggcgcggcc gctatctctg cccttacaaa ctctaccaac
      841 tgacgcaaaa caacgcccag caaaacctgc ttggttttga agcaccggaa gtattgtggg
      901 acagcaaacc caagcccgaa gaattgaagc tgctgcacga cattgccgac gaattttccg
      961 cccgacggtt caacggcgac cgcgacactt ggccggaaaa aatcgatgac gcgatttggc
     1021 tcaaagttac caacgaccgc cacggctgcc tgaaaaccgc ctgtcccaac cgtccggaat
     1081 gtccgtttta cctggcacgc gatgtcttgg aaaccgtcga tgtcgtcgtt gccaaccacg
     1141 accttctgct tgccgacatc agtatgggcg gcggcgtgat tctgcccgcg cccgaaaaca
     1201 gtttctattg catagacgaa gcgcaccacc tgcccaaaaa agccctcagc cgttttgccg
     1261 ccgaacattc gtggaatatt gccgtttgga cgctggaaaa actgccgcag ctgaccggca
     1321 agattgccgc gcttaccgat aaagccgaac ttgccaacct tgccgatgaa gccgccgcat
     1381 ccttgctcga cagcctgcac gaatggcagt tccatttggc ggaagagccg tctttgagct
     1441 tggggccgtc tgaaaacgac aggcgaacca acagcgaacc gacttggctg tgggaagacg
     1501 gcaaaatccc cgaaggcctc gaaaccaccg tttccaacac cgccgttgct gtgcgcagcc
     1561 tgctcaaaca cgttatcggg ctgaacgatg cgctttctgc cgcacgccgc gaaaaagaac
     1621 aggacggcgc gctcctcgac cgcctgaccg gcgatttcgg catcttcatc gcccgtatcg
     1681 aacaaatcag cgcggtttgg gatttgctct ccaccgtccc cctcgaaggc gaagagccgc
     1741 tggcaaaatg gataacccgc cgcgccgacg acaaaaacga ctacattttc aacgccagcc
     1801 ccatcagcag cgcgtcccac ctcgccaaca gcctgtggcg gcgcgcggca ggcgcggtat
     1861 tgacctccgc caccctgcaa tccttgggca actttaacct gatgctgcgc caaaccgggc
     1921 tgcaatggct gcccgagacc accaccctcg ccctcaaaag cccctttgac tttgaaaaac
     1981 agggcgaact ctacatcccc cccatatacg ccagcc
//
LOCUS       DAXIFD010000215         2009 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.215, whole genome shotgun sequence.
ACCESSION   DAXIFD010000215 DAXIFD010000000
VERSION     DAXIFD010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.215"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..861
                     /locus_tag="ACFOCN_001955"
     CDS             <1..861
                     /locus_tag="ACFOCN_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="meta-pathway of phenol degradation family
                     protein"
                     /protein_id="HFC6971042.1"
                     /translation="IFLPALPAILPLSTYADLPLTIEDIMTDKGKWKLETSLTYLNSE
                     NSRAELAAPVYIQTGATSFIPIPTEIQENGSNTDMLAGTLGLRYGLTGNTDIYGSGSY
                     LWHEERKLDGNGKTRNKRMSDISAGISHTFLKDDKTPALIGFLESTVYEKSRNKASSG
                     KSWLIGATTYKAIDPVVLSLTAAYRINGSKTLSSNTKYKAGNYWMLNPNISFAANDRI
                     SLTGGIQWLGKQPDRLDGKKESARNTSTYAHFGAGFGFTKTTALNASARFNVSGQSSS
                     ELKFGVQHTF"
     gene            904..1377
                     /locus_tag="ACFOCN_001956"
     CDS             904..1377
                     /locus_tag="ACFOCN_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971043.1"
                     /translation="MKKQITSAVMMLSMIAPAMANGLDNQAFEKYVFHTQADAPMQLA
                     ELSQKEMKETEGAFLPIVAGALMGGAISAWANHGISKIKTGQFASTRSTLAATAGGMI
                     GGGYSSAMLRGAGITTSVFARSAWKGGNAIPNAVIRANGAALNQSSSAAMGKHRR"
BASE COUNT          572 a          458 c          473 g          506 t
ORIGIN      
        1 atctttttgc ccgccttgcc cgccatcctg cctttatcca cttatgccga cctgcccttg
       61 acgattgaag acataatgac cgacaagggc aaatggaaac tggaaacttc ccttacctac
      121 ctgaacagcg aaaacagccg cgccgaactt gccgcaccgg tttacattca aaccggcgca
      181 acctcgttta tccccattcc gaccgaaatt caagaaaacg gcagcaatac cgatatgctc
      241 gccggcacgc tcggtttgcg ctacggactg accggcaata ccgacattta cggcagcggc
      301 agctatctgt ggcacgaaga acgcaaactc gacggcaacg gcaaaacccg caacaaacgg
      361 atgtccgaca tatccgccgg catcagccac accttcctca aagacgacaa aacccccgcc
      421 ctaatcggct ttcttgaaag cacggtttac gaaaaatcgc gcaacaaagc ctcgtcggga
      481 aaatcgtggc tcatcggtgc caccacctac aaagccatcg accccgtcgt cctctcattg
      541 actgctgcct accgtatcaa cggcagcaaa accctttcaa gcaacaccaa atacaaagca
      601 ggcaattact ggatgctgaa tcccaatata tccttcgccg ccaacgacag aatcagcctc
      661 acgggcggca tccaatggct gggcaagcag cccgaccgtc tggacggcaa aaaagaatcc
      721 gcaagaaaca catccaccta tgcccatttc ggcgcaggtt tcggtttcac caaaaccacg
      781 gctttaaacg catccgcacg tttcaacgtt tcagggcaaa gcagttccga actgaaattt
      841 ggcgtacagc atacatttta agcaggtttt gattttccaa ccttgtaatc caaaggagtt
      901 attatgaaaa aacaaatcac ctcagccgta atgatgctgt ctatgattgc ccccgcaatg
      961 gcaaacggat tggacaatca ggcatttgaa aaatacgtat tccacacgca ggcagatgcg
     1021 ccgatgcagt tggcggagct ttctcaaaag gagatgaagg agactgaggg ggcgtttctt
     1081 cctattgtgg caggtgcttt gatgggaggg gcaattagtg cttgggctaa tcacggcatt
     1141 tctaaaatta aaacagggca atttgcttca acaagaagta ccttggctgc aaccgctggt
     1201 ggtatgatag gaggcggata tagcagtgcg atgttgcgcg gtgcagggat tactactagt
     1261 gtttttgccc gttctgcttg gaaaggggga aatgctattc ctaatgcagt tattcgtgca
     1321 aatggtgcag cattaaatca gtcttctagc gccgcaatgg gaaaacatag aagataaacg
     1381 aaatggatga tctaatacta tattttttat caggtatatt cggaaatcaa gttgctgaat
     1441 atattataaa aaacaaccgt gagataaaag ttccctttat tgtgctttac gcaatatttt
     1501 ttacgttgat ttatactgtg gctttgttgt ttctcagtct gatctattgg gtcaatggtg
     1561 cggagattgc atggaagggg ataggtattt tcagtatgtc ggtcagtttt tgtatagtct
     1621 tctgtcttta tttgattgac aaggcaggaa gatgtaagga taagaaacaa tagggatcag
     1681 atgcggcggc aaacgtagat tgggtctagg ctcaacctgc gtttgctgca tctttggaag
     1741 aaatagtgga ttcgaaaaaa taggaagaat tctgattaat ggtatgcgag gtgtagcaat
     1801 gggggctgtt gctggtggca taaatggtta tgcaggttct acgggtaaga acactgacat
     1861 tcgccgttaa ataataaata aaccaacttc caaccaaacc tgctatcggt ttggttggaa
     1921 gtgagaggag gtaaggtagt gtttgctgtt attttctttt cgacattggg ctgtatttta
     1981 gcatggataa gagatattcc taaaataaa
//
LOCUS       DAXIFD010000216         2003 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.216, whole genome shotgun sequence.
ACCESSION   DAXIFD010000216 DAXIFD010000000
VERSION     DAXIFD010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.216"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            247..1704
                     /locus_tag="ACFOCN_001957"
     CDS             247..1704
                     /locus_tag="ACFOCN_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HFC6971044.1"
                     /translation="MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGMQGILLIY
                     LYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVML
                     GHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
                     AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPIVPHPLSK
                     GQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSS
                     DNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSL
                     WVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFIPFISAGTPMPIAVFAL
                     IVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKCYQAG
                     DEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD"
BASE COUNT          464 a          589 c          456 g          494 t
ORIGIN      
        1 aaaccgccct atcggataag cccttaacag aaaaggcttt acccgcgccg tatcggaaca
       61 catcctctaa aatacaatcc gttgaattga aaaaaatata aaaacatccg cccgcgaaaa
      121 acggcagcgc gtcgtttgac aaagaatgaa aatatcggtt aaaaaccgat tttcatacaa
      181 aaaacaccgc tgccgtccgc atccgtttca gacggtattg agagaaaatc ttttaggaga
      241 acctttatgt cccggcatcc cgcccccacc ggagaaaaaa cattcttcgg ccaccccttc
      301 cagctttcca ccctcttcca tatcgaattg tgggaacgtt tttcatttta cggaatgcag
      361 ggcatcctgc tgatttacct ctactacacc gccgacaaag gcggcttggg catagacaaa
      421 accctcgccg gcggcattgt cggcgcatac agcggcagcg tgtacctgtc caccattttg
      481 ggggcgtggt ttgccgaccg agtatggggt gcggaaaaaa ccctcttcct ctcgggcatc
      541 gtcgtgatgc tcggacacat cgtccttgcc gccgccccgg gcctgtacgg ccttttaatc
      601 gggctgatat tcatcgcatt gggcagcggc ggcgtgaaat ctacggccag ttctatggtg
      661 ggcgcattat acgaacagga cgaaatgcgc ccgctgcgcg atgcgggatt ttccattttc
      721 tacatcgcca tcaatatcgg cggcttccta ggcccgctgc tgaccggcct gctgcaggaa
      781 aacatcggtt tccattatgg tttcggcgcg gcggcggtcg gtatggcatt cggcttgtgg
      841 cgttattcct tgggacgtaa aaacctgccc catcccatcg tcccccatcc gctttcaaaa
      901 ggacagggca aaactgcggc cgccgtcggc attgctctca tcgccgcact tgcaaccgcc
      961 atcaaaaccg ggcttgtcaa cctcgacaat ttctccggca tcctcttatc taccgtcatc
     1021 cttgccgtca ttgcctattt tgcccgcctg ctgactaatc cccgcgtcag ttccgacaac
     1081 aaacggcaca tcatcgccta catcccgctt ttcctgacca tctgtatgtt ttgggccgtc
     1141 tggtttcaga tttacaccgt agcaaccgtc tatttcgacg aaaccgtcaa ccgcaccatc
     1201 ggttcgttta ccgtgcccgt cgcctggaaa gattctatgc aaagcctgtg ggtcatcctg
     1261 ttttccggac ttatggcggc aatgtggaca aaaatggggc gcaaacagcc caaaaccccg
     1321 ctgaaattcg ctatggcggt atttgttacc ggcgcgtcgt ttttgggatt catccccttt
     1381 atttccgccg gcacgccgat gcctattgcg gttttcgcac tgattgtcct tgccatcacg
     1441 ataggcgaac tgatgatttc cccgattgcg ctgtccatct ccaccaaaat cgcaccgcct
     1501 ttattcaaaa cccaaatggt cgcccttaat ttccttgcct tttcattagg cttcactttg
     1561 ggcggcgtat tgtttgaaaa atgctatcag gcgggcgacg aaatcggctt ctatcggctg
     1621 ctgttctaca tcggcgcagc cacaggcttc ctgctgctcc tgctcgtccc caaattgaac
     1681 aaaatgctcg aaggcacaga ctaagtcccg ccccgatgcc gtctgaaccc ttcagacggc
     1741 atttttccgc ataatgaaac caaaccgttt ccacccgaca ggacaggctc cccccaaccg
     1801 gaaggcagcc tgccgattgt catttaaata tctgactgat tccgtctgtt tgcaagggaa
     1861 atagccgttt atttccgctt gggcggaaac cggttctatt gagtaaaagg cattttatcc
     1921 gactaaatta gtgctgcatc aacggaatat atagtggatt aacaaaaatc aggacaaggc
     1981 gacgaagccg cagacagtac aaa
//
LOCUS       DAXIFD010000217         2003 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.217, whole genome shotgun sequence.
ACCESSION   DAXIFD010000217 DAXIFD010000000
VERSION     DAXIFD010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.217"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            174..1625
                     /gene="cysG"
                     /locus_tag="ACFOCN_001958"
     CDS             174..1625
                     /gene="cysG"
                     /locus_tag="ACFOCN_001958"
                     /EC_number="1.3.1.76"
                     /EC_number="2.1.1.107"
                     /EC_number="4.99.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0043115 - precorrin-2 dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051266 - sirohydrochlorin ferrochelatase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="siroheme synthase CysG"
                     /protein_id="HFC6971045.1"
                     /translation="MNYFPIFANLAGRPVLVVGGGAVAARKISLLLKAGAEVRVAAKH
                     LNAELSALAAENKILWLAEEFRAEHIRTVFLIIAASSDQALNRRVFHLAESCQKPVNV
                     VDDRDHCSFIFPSVIDRNPVQIAVSSSGSAPVLARLLRERLEALLPPSLGDMAEISGR
                     WRDAVKAKLKSVTERRRFWEKQFNGRFAALVKNQQTAQAEQELAKQLEQNYQGGFVSL
                     VGAGPGDAGLLTLKGLQEIQQADVVLYDALVSDGILSLVRRDAERIFVGKRARGGRTP
                     QEDTNALMVRLAREGRRVVRLKGGDPFVFGRGGEELETLARHQIPFSVVPGITAAVGA
                     TAYAGIPLTHRDYAQSAVFVTGHRKADAPDIEWQTLARSRQTLVIYMGALKAALIAER
                     LQQHGRSPDTPAAVISQGTLPAQKTATGTLANLSELAETAPNPALIVIGEVVGLHEKL
                     AWFGENAKKESNPAEHAYFALDGLGTGQEQQAA"
     gene            1641..>2003
                     /locus_tag="ACFOCN_001959"
     CDS             1641..>2003
                     /locus_tag="ACFOCN_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HFC6971046.1"
                     /translation="MKIFKPALWKIPPIENGSETALAEKTETLKQRLHRIAGSHRDAR
                     FASSLAAEDMVITDLIAGENLNIGIFTLDTGLLHAETLNLLDRIERVYPHMQIKRFQP
                     IREDALHYVESKGRFAFYD"
BASE COUNT          475 a          589 c          553 g          386 t
ORIGIN      
        1 ggaaaaccgc cgcatccgca gccgccctca tatagctttc agcttctaac aaatgccttt
       61 ttattattta accgggaaaa tccttttgtc taaaatgacc cgcattccga caaaaatgcc
      121 gcgacgcacc gtatcggaaa caaggtgcgg gcaaacagca aaggagtcag ccagtgaatt
      181 atttccctat tttcgccaac ctcgccggcc gccccgtatt ggtcgtaggc ggcggcgcgg
      241 tcgccgcacg caaaatcagc ctgctgctga aggcgggcgc agaggtcagg gttgccgcaa
      301 aacacctgaa tgccgaactc tccgcgttgg cggcggaaaa caaaatcctg tggcttgccg
      361 aagaatttcg tgccgaacac atccgcacgg ttttcctcat cattgcggca agcagcgacc
      421 aagccctcaa ccggcgcgtt ttccatcttg ccgaaagctg ccaaaagccg gtcaacgtgg
      481 tggacgaccg cgaccattgc agcttcatct tcccgtcggt tatcgaccgc aacccggttc
      541 agattgccgt ttccagctcc ggcagcgcgc ccgtcctcgc ccgactgctg cgtgaaaggc
      601 tggaagccct gctgccgccg tctttgggcg atatggcgga aatctccgga agatggcgcg
      661 atgcggtcaa agccaaactg aaatccgtta ccgaacgccg ccgtttttgg gaaaagcagt
      721 tcaacggccg ttttgccgcc ctcgttaaaa atcaacaaac cgcccaagcc gaacaggagt
      781 tggcaaagca gttggaacaa aattatcaag gcggttttgt gtctttggtc ggtgcgggtc
      841 ccggcgatgc ggggctgctg acgctcaaag ggctgcagga aatccagcag gcagacgtgg
      901 tgctttacga cgcgctggtt tcagacggca tactgtccct cgtccgccgc gatgcggaac
      961 ggatttttgt cggcaagcgc gcccggggcg gccgcacccc gcaagaggac accaatgcgc
     1021 ttatggtcag gctggcccgc gaaggcaggc gcgtggtgcg tttaaaaggc ggagaccctt
     1081 tcgtgttcgg acgcggcggc gaagaattgg aaaccttggc acgccatcag atcccgtttt
     1141 cggtcgtccc cggcattacc gccgccgtcg gcgcgaccgc ctatgccggc atcccgctca
     1201 cgcaccgcga ttatgcccaa agtgcggttt tcgtaaccgg ccaccgcaag gcggatgcgc
     1261 ccgacatcga atggcagacc ctcgcccgca gccgccagac cttggtgatt tatatgggtg
     1321 cgctcaaagc cgccctgatt gccgaacggc tgcaacagca cggacgctcg cccgacacgc
     1381 cggcagccgt tatcagccaa ggcacgctgc cggctcaaaa aaccgcaacc ggcacgctcg
     1441 ccaacctttc cgaactcgcc gaaaccgcgc cgaatccggc attgattgtc ataggcgaag
     1501 tggtggggct gcacgaaaaa ctggcttggt tcggcgaaaa cgccaaaaaa gaaagcaatc
     1561 cggccgaaca cgcgtatttt gcattggacg gactgggcac cggacaagaa caacaagccg
     1621 cataaagcaa ggcggacaaa atgaaaattt tcaaacctgc tttatggaaa attccgccga
     1681 ttgaaaatgg cagtgaaacg gctttggcgg aaaaaacgga aaccctcaaa caacgcctgc
     1741 accggattgc cggcagccac cgggatgcac ggtttgccag cagccttgct gcggaagata
     1801 tggtaattac cgaccttatc gccggagaaa acctcaatat cggtattttt actttggata
     1861 cggggctgct gcacgcggaa actttaaacc tgttggatag gattgaacgt gtttatccgc
     1921 atatgcaaat caagcgtttc caaccgatac gggaagatgc cctgcattat gtggaaagca
     1981 aaggcaggtt tgccttttac gac
//
LOCUS       DAXIFD010000218         1951 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.218, whole genome shotgun sequence.
ACCESSION   DAXIFD010000218 DAXIFD010000000
VERSION     DAXIFD010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.218"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(498..1580)
                     /gene="porB"
                     /locus_tag="ACFOCN_001960"
     CDS             complement(498..1580)
                     /gene="porB"
                     /locus_tag="ACFOCN_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric porin PorB"
                     /protein_id="HFC6971047.1"
                     /translation="MKKSLIALTLAALPVAAMADVTLYGTIKAGVEVSRVKDAGTYKA
                     QGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGL
                     KGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVF
                     AGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNT
                     DAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSTKGKKHEQ
                     TQVAATAAYRFGNVTPRVSYAHGFKAKVNGMKDANYQYDQVIVGADYDFSKRTSALVS
                     AGWLKQDKGAGKVEQTASMVGLRHKF"
BASE COUNT          464 a          429 c          498 g          560 t
ORIGIN      
        1 ttagcttgtg ggtatttacc ggaaaaaaca gaaaccgctc cgccgtcatt cccgcgcagg
       61 cgggaatcta ggtctgtcgg cacggaaact tatcaggtaa aacggtttct tgagattttg
      121 cgtcctggat tcccactttc gtgggaatga cgggatgcag gttcgtggga atgacggaat
      181 gtaggttcat gggaatgacg cggtgcaggt ttccgtacgg atgaatttgt cattcccgcg
      241 caggcgggaa tctaggtctg tcggtgcgga aacttatcgg gtaaaacggt ttcttgagat
      301 tttgcgttct agattcccac tttcgtggga atgacggaat gtaggttcgt gggaatgacg
      361 gcggagaagt ttctgctttc ccgataaatg cccactctcg tgggaatgaa ggctgccgca
      421 ttaaatagca aacgaatcat ttcaaataaa aaagcctgtc tgacgacagg ctttttgttg
      481 ataccaatct tttcagatta gaatttgtga cgcagaccaa ccatgctggc agtttgttcg
      541 acttttcccg cgcctttatc ttgtttcaac caaccggcag aaaccagagc ggaagtgcgt
      601 ttggagaagt cgtagtcggc accaacgata acttggtcgt attggtaatt tgcgtctttc
      661 atgccattca ctttagcttt gaagccgtgg gcgtaagaaa cgcgaggcgt tacgttgcca
      721 aaacggtaag cggcagtagc ggcaacttga gtttgctcgt gttttttacc cttggtagaa
      781 ccaacctcgt tgtttttagc agcttcatac tgaccggcaa cagaaacgta caggtcattg
      841 gcatcgtaac cggcaactac gcggtgtact tggtaatcct taacaggatg ggcatttgca
      901 gtatttactg caacacgttc tgcatcagtg ttcaaatcag catatttggc aaaagaacct
      961 gcgtattgac cgaagaaacc ggcattttcg tatttcagac cggcgtggta agactcacgg
     1021 ctggacttcg tatgtttgta tttatccaca tcattcgcat tatcgcgcgg aacgtattgt
     1081 acgctgccgc tgaagcctgc aaatacggga gagtcgtagc gtacggagat ttcacggctt
     1141 tctacacgac cgatagtacc cagtcccagt acatcttcgg tgttagaacc agattcccat
     1201 gcattgacgt tgtcgccgct gtctttcaat acggtgttca gattaccggc gcggacggta
     1261 ccgaagccgc ctttcaagcc gatgaaggac tggcggttac cccagccgct gttagtgccg
     1321 gcgatggagg ctttttgttc caactgccaa atggctttca tgccgttgcc gaggtcttct
     1381 tgacctttga aaccgatttt agaaccgaag tcggcaattt gggttgcagt tttagatttt
     1441 ccgccttgag ctttatatgt accagcatct tttacgcgag aaacttctac gcctgcttta
     1501 attgtaccgt acaaggtaac gtcagccatt gctgcaacag gcagggcagc cagtgtcagg
     1561 gcaatcaggg attttttcat tgctgtattc cttttcatag ttaagaaatt taagccagcc
     1621 gggctttcca agccgcttag ctttgcattt accgccgacg ttttcggcga ttccatgtct
     1681 gaaactatag atgttcctgt ctgaaaaaac aaacttctgc ctgtttttgt gtggaattcg
     1741 atgtgtattt tgaagggcgg atagagatat tgtgggtatt ttttgtttta taacatatgg
     1801 ttatttaaat tttttaagat ttgcattttt acaacactta ctcgggaggg tattggaggg
     1861 cattgcaaac cgggggttat aaagacggca aaaaacgcgc acgtggtttc tttcggaacg
     1921 ggcggatgca aaacccgacc ctgcggcagg a
//
LOCUS       DAXIFD010000219         1877 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.219, whole genome shotgun sequence.
ACCESSION   DAXIFD010000219 DAXIFD010000000
VERSION     DAXIFD010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.219"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            54..431
                     /locus_tag="ACFOCN_001961"
     CDS             54..431
                     /locus_tag="ACFOCN_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6971048.1"
                     /translation="METHEKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNV
                     PRLEQLAQIFKIDMWDLLKSGGGGMVFQINEGDSGGDIALYASGDVSMKIEFLKMELK
                     HCKEMLEQKDKEIELLRKLTETV"
     gene            520..1089
                     /gene="rsmD"
                     /locus_tag="ACFOCN_001962"
     CDS             520..1089
                     /gene="rsmD"
                     /locus_tag="ACFOCN_001962"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HFC6971049.1"
                     /translation="MAAGKHTKHSNRVRIIGGQCRGRKLSFTSADGLRPTPDSVREKL
                     FNWLGQDLTGKTVLDLFGGSGALGIEAASRNAKRVLISDNNRQTVQTLQKNSRELGLG
                     QVQIVCSDGIAYLKTVSEQFDVVFLDPPFAWQDWQILFDALKPCLNPRAFVYLEAGTL
                     PDIPDWLTEYREGKSGQSTFELRVFQVAE"
     gene            1212..1463
                     /locus_tag="ACFOCN_001963"
     CDS             1212..1463
                     /locus_tag="ACFOCN_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HFC6971050.1"
                     /translation="MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGH
                     YDEPQCQQVCPVDCILIDEEHPETHDELMAKYEKIIQFK"
     gene            1560..1643
                     /locus_tag="ACFOCN_001964"
     tRNA            1560..1643
                     /locus_tag="ACFOCN_001964"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1594..1596,aa:Tyr,seq:gta)
     gene            1674..1747
                     /locus_tag="ACFOCN_001965"
     tRNA            1674..1747
                     /locus_tag="ACFOCN_001965"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1706..1708,aa:Gly,seq:tcc)
     gene            1757..1831
                     /locus_tag="ACFOCN_001966"
     tRNA            1757..1831
                     /locus_tag="ACFOCN_001966"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1789..1791,aa:Thr,seq:ggt)
BASE COUNT          532 a          408 c          479 g          458 t
ORIGIN      
        1 gaagtttaaa atctatccca ataattcaac catctataca gaaagttcag cttatggaaa
       61 cccacgaaaa aatccgcctg atgcgcgaat tgaataaatg gtcccaggag gatatggcgg
      121 aaaagctggc gatgtcggca ggagggtatg ccaaaatcga acggggcgaa acgcagttga
      181 atgtcccgcg tttggagcag ttggctcaga ttttcaaaat cgatatgtgg gacttgctca
      241 aatcgggcgg tggtgggatg gtgtttcaga ttaatgaagg tgatagtggt ggcgatattg
      301 cgttgtatgc gtcgggtgat gtttcgatga aaatagaatt tttaaaaatg gagttgaaac
      361 actgcaaaga aatgttggaa caaaaagaca aagaaatcga gctgctccgc aagctgaccg
      421 aaaccgttta aacagatatg ccgtctgaaa aaagttttca gacggcatat tctttgacag
      481 gtcttgtata ataccgtttg aacttacagg tttttgatta tggcggcagg caaacatacc
      541 aaacacagca accgggtacg cattatcggc gggcaatgcc ggggcaggaa attgagtttc
      601 acatccgccg acggactgcg tccgacaccc gacagcgtgc gtgaaaagct gtttaactgg
      661 ctgggacagg atttgacggg taaaacggtt ttggatctct tcggaggcag cggcgcactc
      721 ggtatagaag ccgcttcgcg caacgccaaa cgcgtgctga tttcggataa caaccgccaa
      781 accgtgcaga ccttgcagaa aaacagtcgc gaactgggtt tggggcaggt gcaaatcgtc
      841 tgttcagacg gcatcgcata tttgaagacc gtatccgaac agtttgatgt tgtctttctc
      901 gacccgccgt ttgcatggca ggactggcaa atcctgtttg atgccttgaa gccgtgcctg
      961 aacccccgag cattcgtcta tctcgaggcg ggtacgctgc cggatattcc cgattggctg
     1021 acggaatata gagaagggaa atcggggcag agtacattcg aattaagggt tttccaagtg
     1081 gctgaataat atgcgctttg ataatcattt ccgagttgta aacattcgtt tgcaaccgtc
     1141 cggttcaaaa aaaccttgtg ctataatccg cgcccgcccg gttttgataa tttagtggaa
     1201 aaggaaaaga aatgtcgctt tttattaccg acgagtgcat caactgcgac gtatgcgaac
     1261 ccgaatgccc caatgatgcc atttcccaag gcgaggaaat ttacgaaatc aaccccaacc
     1321 tctgcacgca gtgcgtcgga cactacgatg agccgcagtg ccagcaggtt tgcccggtgg
     1381 actgcatcct gattgacgaa gaacatcccg aaacccatga cgagttgatg gcgaaatacg
     1441 aaaagattat ccagtttaaa taaattcttt ttaaaacatc aaattatgtc tgttttgaaa
     1501 taaaatcaaa aaaaaacttg acggaaaagc aagccgctaa taaactaacg ttctcttttg
     1561 gagggattcc cgagcggtca aagggggcag actgtaaatc tgttgcgaaa gcttcgaagg
     1621 ttcgaatcct tctccctcca ccaaaattct tacttggggc agtagcgagt aatgcgggtg
     1681 tagctcaatg gtagagcaga agccttccaa gcttacggtg agggttcgat tcccttcacc
     1741 cgctccaaac aattaggccc atgtagctca ggggtagagc actcccttgg taagggagag
     1801 gtcggcagtt caaatctgcc catgggcacc atctctcgat tattcatttc tttaaggctt
     1861 agatatatag gatattg
//
LOCUS       DAXIFD010000220         1861 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.220, whole genome shotgun sequence.
ACCESSION   DAXIFD010000220 DAXIFD010000000
VERSION     DAXIFD010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.220"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            250..321
                     /locus_tag="ACFOCN_001967"
                     /pseudo
     CDS             250..321
                     /locus_tag="ACFOCN_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696591.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family metal-binding protein"
     gene            425..808
                     /locus_tag="ACFOCN_001968"
     CDS             425..808
                     /locus_tag="ACFOCN_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HFC6971051.1"
                     /translation="MYCLRLRRLVLIFVNPLYIIATTVPAQQAFLDAAELMQWSIETE
                     GLGLNVISHKILGKDHAQVEFEAYFQDGQHRSAHHELSGFVNIGGQWYFIDPTVPHPA
                     MKQPCICGSGKKFKACCGKYLQPVA"
     gene            811..1032
                     /locus_tag="ACFOCN_001969"
     CDS             811..1032
                     /locus_tag="ACFOCN_001969"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971052.1"
                     /translation="MPSERSDGIFNAQKKPFIPRVSMNGQYIAGKRLTCCTAEKGETT
                     VLTSKSIVPLLMLKNINFENILTNISGTY"
     gene            complement(1026..1820)
                     /locus_tag="ACFOCN_001970"
     CDS             complement(1026..1820)
                     /locus_tag="ACFOCN_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6971053.1"
                     /translation="MLHRLQKVVRHIAQTEIMPRFLNTPSHRKEDGSMLSEADIAAQT
                     AFAAALPLLIDCPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAV
                     SVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIK
                     YLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIF
                     EEAGGRLTTLEGDEFWSGQHVFKRSVIAALEPNLFERWVRWIRENQ"
BASE COUNT          484 a          527 c          428 g          422 t
ORIGIN      
        1 gcaaagccat ctgaaggcga tgtgtttgaa cctgttgaaa gccgccaaca ggctaagtgc
       61 gcctgttgcc gcctaaaagg cagcacggat gcctgattat cgggtatccg gggaggatta
      121 agggggtatt ggggtaaaat taggaggtat ttggggcgga aatagctgaa aacctgtgtt
      181 tgggtttcgg ctgtcgggaa ggaaaggaat tttgcaaagg tctcgggcta tgccggctgc
      241 tgccgcccat tgcaccttcg ccgaatcctg ccgcccaccg ccgaagccct catgcgttcg
      301 cggtacagcg cgtatgtgct actatagtgg attaacaaaa accagtacag cgttgcctcg
      361 ccttagctca aagagaacga ttctctaagg tgctgaagca ccgagtgaat cggttccgta
      421 ctatttgtac tgtcttcggc ttcgtcgcct tgtcctgatt tttgttaatc cactatacat
      481 catcgctact accgttccgg cgcaacaggc attcctcgat gccgccgaac tgatgcaatg
      541 gagtatagaa accgaagggc tgggcttgaa cgtcatctcg cacaagatac tcggcaaaga
      601 ccacgcccaa gtcgaatttg aagcctactt ccaagacgga caacaccgat ccgcacatca
      661 cgaactgtcc ggcttcgtca acatcggcgg acaatggtat ttcatcgatc cgactgttcc
      721 gcatcctgcg atgaaacaac cctgcatttg cggatcgggc aaaaaattca aagcctgctg
      781 cggcaaatat ctgcaacctg tcgcataaaa atgccgtctg aacgttcaga cggcattttc
      841 aacgcgcaaa aaaaaccatt cataccaagg gtaagtatga atggtcaata cattgcggga
      901 aaacgtctta cttgctgcac tgccgaaaag ggagaaacga cagtgttaac cagcaaaagc
      961 attgtacctt tattaatgtt aaaaaacatt aattttgaaa atatattaac gaatatatct
     1021 ggaacctact gattttccct tatccacctg acccagcgtt caaacaaatt aggttcgagt
     1081 gcagcaataa ccgaacgttt gaacacatgc tgtccgctcc agaattcatc gccttccaat
     1141 gtcgtcagcc tgccgcccgc ctcctcgaaa atcaacgcac ccgcagcata atcccacagc
     1201 ttctgcccgc cgtgaacata aacatcataa cgcccgcaag ccagataaca ccagtccagc
     1261 gtgctgctgc ccatactccg tatcgttcca aaaggcgcga gcgtactcat gcggctggaa
     1321 agtttgcccg aacgcagata tttgatttcc acgcccgcaa tcgcctcatt gagtttttta
     1381 tccacgagac gcaaaggcag gcgcgtcccg tttaaaaacg ccccctgccc ccgttcggca
     1441 taaaaacatt cgccgctgac cggattgtag attacgccca actcggcacg cccgttgcgg
     1501 acaaacgcca ccgacaccgc aaaatgcggc agcccgttga caaaattatt tgtcccgtct
     1561 atcggatcga caatccacag ccccttttcc cccgaatatt gttcccacaa agccgactgt
     1621 tcctgccgcg acatttcctc gcccaacatc gggcaatcga tcagaagcgg caacgcggcg
     1681 gcaaaagccg tctgcgcggc aatgtccgcc tcgctcaaca tcgaaccgtc ttccttgcgg
     1741 tgggatggcg tattcaaaaa acgcggcata atttcggttt gcgcgatatg gcgcacgact
     1801 ttctgcaaac ggtgtaacac ttcctactgt cctcatattt tgaacttgcg gcgcgcgaac
     1861 g
//
LOCUS       DAXIFD010000221         1851 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.221, whole genome shotgun sequence.
ACCESSION   DAXIFD010000221 DAXIFD010000000
VERSION     DAXIFD010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.221"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            61..261
                     /locus_tag="ACFOCN_001971"
     CDS             61..261
                     /locus_tag="ACFOCN_001971"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971054.1"
                     /translation="MDTVGSLAIGYATGGNAGAFTGANADWNNRQLHSSEYKLAEQYA
                     DIVASRLNISKETCTVIYLGIN"
     gene            296..1738
                     /gene="aldA"
                     /locus_tag="ACFOCN_001972"
     CDS             296..1738
                     /gene="aldA"
                     /locus_tag="ACFOCN_001972"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HFC6971055.1"
                     /translation="MKQLAMYINGRFENDFNGEWRDVLNPSTEETIAREPKGGKADVD
                     RAVAAARAAQPAWERLPAVERGAYLRKIAQGIRERSDELTDTIVAEGGKTKDLARVEV
                     MFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVVAGILPWNFPFFLIARKM
                     GPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQ
                     VDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVG
                     NTGQICNCAERVYVHSSLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVK
                     AVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSA
                     FDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAG
                     WKKSGIGGADGKHGLEEYLQTQVVYLETDI"
BASE COUNT          474 a          508 c          486 g          383 t
ORIGIN      
        1 aacggttgat agaataagtg tttcatttat tagagaaatt caggcagcct gaaacctgtt
       61 gtggataccg ttggcagttt agcgattggt tatgccacag gcggcaatgc tggggctttt
      121 actggtgcga atgcagattg gaataatcgg cagttgcatt cgagtgaata taaattagca
      181 gaacaatatg cagacatagt agcttctcgt ctaaacattt caaaagaaac ttgtacggta
      241 atttatttgg gaataaacta aaactacatc tgactacaaa actggagaac ccgaaatgaa
      301 acaattggcc atgtacatca acggacgctt tgaaaacgat ttcaacggcg aatggcgcga
      361 cgtattgaac ccatccaccg aagaaaccat cgcccgcgaa cccaaaggcg gcaaggcgga
      421 cgttgaccgc gccgtcgcgg cggcgcgtgc ggcgcaaccg gcttgggagc gtctgcctgc
      481 ggtcgaacgc ggcgcgtatt tgcgcaaaat cgcccaaggc atacgcgaac gctccgacga
      541 gctgaccgac accatcgttg ccgaaggcgg caaaaccaaa gacttggcgc gcgtggaagt
      601 catgttcact gccgattatc tcgattacca agccgaatgg gcgcgccgtt acgaaggcga
      661 aatcatccaa agcgaccgcc cgcgcgaaaa cattttattg ttcaaacgtc cgctgggcgt
      721 cgtggcaggc attttgccgt ggaacttccc cttcttcctg attgcccgca aaatgggccc
      781 ggctttggta acgggcaata ccatcgtcgt caaacccagc agcgtaaccc cgatcaactg
      841 ccacatcttc gccgaaatcg tcgatgcggt cggactgccc gcaggcgtgt tcaacgtagt
      901 gaacggccct ggtgcggaaa tcggcaatgc cttgtccgcc catccgcaag tcgatatggt
      961 cagcctgacc ggctccgtcg aagcaggccg ccaagtgatg gaagccgcct ccgccaacat
     1021 caccaaagtt tcgttggaac tcggcggcaa agcccccgcc atcgttttga aagacgcgga
     1081 tttggatttg gcggtgaaat ccatcttggc ttcgcgcgtc ggcaacaccg gtcaaatctg
     1141 caactgcgcc gagcgcgtct atgtccacag cagcctgaaa gacgcgttca ttgaaaaaat
     1201 gaccgccgcc atgaaaggcg tgcgctacgg caaccctgcc gaagccgaag caggcgcgct
     1261 ggaaatgggt ccgctgattg aagagcgcgc cgtcaaagcc gttgccgaaa aagtggaacg
     1321 ggcagtcaaa caaggtgcga aactggtctg cggcggcaaa cgcgccgaag ggcgcggcta
     1381 tttcttcgag ccgaccctgc tgaccgacac cgacaacagt atggacatta tgaaagaaga
     1441 aaccttcggc cccgtgctgc ccgtttccgc tttcgacacg ctcgaccaag tcatcgcact
     1501 ggctaacgat tgcgagtttg gtctgaccag ttctgtttat acgactaatt taaacgaagc
     1561 cttctacgtt acccgccgcc tgcaattcgg cgaaacctac atcaaccgcg aaaacttcga
     1621 agccatgcag ggtttccacg cgggctggaa aaaatccggc atcggcggcg cggacggcaa
     1681 acacggtttg gaagaatatc tgcaaaccca agtcgtttat ctggaaaccg acatttaatg
     1741 ccgctttaaa accccgatag aaaatgccgt ctgaacccgt tttcaggttc agacggcatt
     1801 tttacagttt caccggcaat cagtcatgac cgacatcgat gtttttgtct t
//
LOCUS       DAXIFD010000222         1846 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.222, whole genome shotgun sequence.
ACCESSION   DAXIFD010000222 DAXIFD010000000
VERSION     DAXIFD010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.222"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            52..1560
                     /gene="nadB"
                     /locus_tag="ACFOCN_001973"
     CDS             52..1560
                     /gene="nadB"
                     /locus_tag="ACFOCN_001973"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HFC6971056.1"
                     /translation="MQTDCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASHH
                     AQGGIAAAWSREDDIEKHVADTLEAGAGLCNEAAVRTILSQGKPAIEWLLAQGVAFDR
                     NYDGLHLTREGGHTCRRIAHVADYTGEAVMQSLIAQIRRRPNIRVCERQMALDIQTES
                     GAACGLTVLDCRTQETHRIRARHTVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCA
                     VENLEFIQFHPTGLARPSENGRTFLISEAVRGEGGILTNQAGERFMPHYDRRAELAPR
                     DIVARAIAAETAKQTQDFVSLDISHQPAAFVRQHFPSIHRHCLSQCGLDITRQAIPVR
                     PVQHYTCGGIQTDPSGRTSLPQLYALGETACTGLHGANRLASNSLLECVVTARLAAQT
                     IADGQAFQTVPSKRSSENTSAEADIFSDGIQNTFSRPALQAFNQRHLGILRNDTGLRR
                     AIAQLRLWKQNQTEPHTVSEYENRNLLECSLAVAQAAYRRRQNIGAHFNSDC"
     gene            1743..>1846
                     /locus_tag="ACFOCN_001974"
     CDS             1743..>1846
                     /locus_tag="ACFOCN_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6971057.1"
                     /translation="MSTFFRQTAQAMIAKHIDRFPLLKLDQVIDWQPI"
BASE COUNT          443 a          616 c          461 g          326 t
ORIGIN      
        1 aatttaatcc actataccgt ttcagacgac ctctcaaaca aggacaacac catgcaaacc
       61 gattgcgacg tattgattgc cggaaacggg ctggcggcac tgacgctcgc cctgtcgctg
      121 cctgaatcgt tccgcatcgt cattttgtgc aaaaaccggc tggacgacac cgccagccat
      181 catgcgcaag gcgggattgc ggcggcgtgg tcgagagagg acgacatcga aaaacacgtt
      241 gccgatactt tggaagcggg cgcaggtttg tgcaacgaag ccgccgtccg caccatcctg
      301 tcgcagggca aaccggcaat cgaatggctg ctggcgcagg gcgtggcgtt cgaccgaaat
      361 tatgacggtc tgcacctgac acgcgaaggc gggcacacct gccgccgaat cgcccacgtc
      421 gccgactaca cgggcgaagc cgtcatgcag agcctgattg cccaaatacg ccgccgcccg
      481 aacatccgcg tttgcgagcg gcagatggcg ttggacattc aaaccgaatc aggcgcggcg
      541 tgcggactga ccgtcctcga ctgccgaacg caagaaaccc accgcatccg cgcccgccat
      601 accgtactcg caggcggcgg cttggggcag atttacgccg ccaccaccac gccgcccgaa
      661 tgcacgggcg acgccatcgc tatggcgata cgcgcaggct gcgcagtcga aaacctcgaa
      721 tttatccaat tccaccctac aggcttggca aggccgtctg aaaacggccg caccttcctg
      781 atttccgaag ccgtgcgcgg cgaaggcggc atcctgacca accaagcggg cgaacggttt
      841 atgccgcatt acgaccgccg cgccgaactc gcaccgcgcg acatcgttgc ccgcgccatt
      901 gccgccgaaa ccgccaaaca aacgcaagac ttcgtctcgc tcgacatcag ccatcaaccc
      961 gcagcgttcg tccgccagca ttttccgtcc atccatcgac actgtttatc ccaatgcggc
     1021 ttggacatca cgcgccaagc catccccgtc cgccccgtgc aacactacac ctgcggcggc
     1081 atccaaaccg accccagcgg cagaacttcc ctgccgcagc tctacgcctt aggcgaaacc
     1141 gcctgcacag ggttgcacgg agccaaccgc ctcgccagca actccctact cgaatgcgtc
     1201 gttaccgcca ggcttgccgc ccaaaccatc gcggatggac aagcgttcca aaccgtaccg
     1261 tccaaaaggt cgtctgaaaa cacctccgcc gaagcagaca tcttttcaga cggcatccaa
     1321 aacacattca gccgccccgc cctgcaagcg ttcaaccaac gccatctcgg catcctccgc
     1381 aacgataccg gcctgcgccg cgccatcgcc caactgcggc tttggaagca aaaccaaacc
     1441 gaaccgcaca ccgtgtccga atacgaaaac cgcaacctgc tcgaatgcag cctcgccgtc
     1501 gcccaagccg catacaggcg gagacagaac atcggcgcgc attttaatag tgattgttaa
     1561 ggttggctgg ttagaaaaaa tcgttcaaat gaattttaat agcatggtta agagattggc
     1621 attcagtttt tagggttgcg taagttgggt tatcaatctg ttctaaaagc agaaaggccg
     1681 agacctttgc aaaattcccc aaaatcccct aaattcccac caagccattt aggggatttt
     1741 ccatgagcac cttcttccgg caaaccgcac aagccatgat tgccaaacac atcgaccgct
     1801 tcccgctatt gaagttggac caggtgattg attggcagcc gatcga
//
LOCUS       DAXIFD010000223         1842 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.223, whole genome shotgun sequence.
ACCESSION   DAXIFD010000223 DAXIFD010000000
VERSION     DAXIFD010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.223"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(159..596)
                     /gene="rnhA"
                     /locus_tag="ACFOCN_001975"
     CDS             complement(159..596)
                     /gene="rnhA"
                     /locus_tag="ACFOCN_001975"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HFC6971058.1"
                     /translation="MDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTN
                     NRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDD
                     LWKELDTLVGQHQVSWTWVKGHAGHAENERADDLANRGAAQFS"
     gene            709..1098
                     /locus_tag="ACFOCN_001976"
                     /pseudo
     CDS             709..1098
                     /locus_tag="ACFOCN_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            complement(1248..>1842)
                     /locus_tag="ACFOCN_001977"
     CDS             complement(1248..>1842)
                     /locus_tag="ACFOCN_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HFC6971059.1"
                     /translation="SRESIDATIIQTAGSKQRQAIEVDEEGQISGQTTPSKDSDARWI
                     KKNGLYKLGYKQHTRTDVEGYIEKLHITPANAHECKHLPPLLEGIAEGTTVYADKGYD
                     SAENRQHLEERQLLDGIMRKACRNRPLSEAQTKRNRYLSKTRYVVEQSFGTLHRKFRY
                     ARSTYFGLIKVSAQSHLKAMCLNLLKAANRLSAPAAA"
BASE COUNT          342 a          455 c          536 g          509 t
ORIGIN      
        1 tgcgcgggaa tgacggtgga gcggtttcag ttgtttctaa ataaattttt gcagcgttgg
       61 gtttttagat tcccgcctgc gcgggaatga cggtggagga cgatgccgtc tgaatcccat
      121 tagcggtttc agacggcatt ttcttgtcgg tgcgacagtc aggaaaactg cgctgcgcca
      181 cggtttgcca aatcgtcggc gcgttcgttt tccgcgtgtc ccgcgtgtcc tttaacccaa
      241 gtccaactga cttggtgctg cccgaccaga gtgtcgagtt ctttccataa atcgtcgttt
      301 ttgacgggct gtttggcggc ggttttccag ccgttgcgct tccaaccgtg tatccagttt
      361 tccatgccgt ttttgacgta ttgcgagtcg gtgcagatga tgacggtgca gcggcgtttg
      421 agcgatttca gtccttcgat gacggcggtc agctccatgc ggttgttggt ggtttgcgct
      481 tcgccgccga aaagttcttt ttcgtggctg ccgtagcgca tcaacacgcc ccagccgccc
      541 gcgccgggat tgcctttgca cgcgccgtcg gtgtaaaggt aaacgggtgt gtccatattg
      601 tgcctttgtg tggtgtccgg cgtgattata agcggtttgc gcgccgtgcc gtctgaaaga
      661 ttgcggcgga ttgaaatagg catataatgt gcaactttat ttttgaatat gaaagagcgg
      721 atagtgggtc aaagcggcga gttgttttgt ttcgggcaaa tgcccgtatg gaaggcggaa
      781 aacctgccgg aagttttgtt gtcgggctat tcgtccgagg aaggggaatg ggtctgcctg
      841 aatgtgttgc agggcgatgt cgaagtccgc acgcaggacg gggcggcgga ggtttggtcg
      901 gcagaaagcg gcgattgcgt gtttgcgccg cagcaggtgt tttcggtcaa actgaaaacg
      961 gacgatgccg aaatccgttt gtcgctgtat tgcgcggcgg cagactattt tcacaaaaaa
     1021 tacgggatga gtgccacgca ttctgcggtc gcggcggcac gggataccgt accggcgggc
     1081 agggcgttgg atatgggttg agacctttgc aaaattcctt tccctcccga cagccgaaac
     1141 ccaaacacag gttttcagct gttttcgccc caaataccgc ctaattttac ccaaataccc
     1201 ccttaatcct gcccagatac ccgataatca ggcatccgtg ctgcctttta ggcggcagcg
     1261 ggcgcactta gcctgttggc ggctttcaac aggttcaaac acatcgcctt caggtggctt
     1321 tgcgcactca ctttaatcag tccgaaatag gttgaccgcg catagcggaa tttacggtgc
     1381 agcgtaccga agctttgttc gaccacataa cgggtcttcg acaaatatcg gttgcgtttg
     1441 gtttgcgctt ccgacagcgg acggttgcgg caggctttgc gcataatgcc gtctaacaac
     1501 tgacgctctt ccagatgttg ccggttttcc gcactgtcat agcctttgtc ggcatagacg
     1561 gtcgtacctt cagctatccc ttccagcaaa ggcggcaggt gtttgcactc atgggcattg
     1621 gcgggggtaa tgtgcagttt ctcgatatag ccttccacat cggtacgggt atgttgtttg
     1681 taaccgagtt tgtagaggcc gtttttcttt atccaacggg catcgctgtc tttactcggt
     1741 gtggtttggc cgctgatttg tccttcttcg tcaacttcta tggcctgacg ctgtttgctg
     1801 ccagcggtct gaataatggt ggcgtcaatg ctttctctac tt
//
LOCUS       DAXIFD010000224         1831 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.224, whole genome shotgun sequence.
ACCESSION   DAXIFD010000224 DAXIFD010000000
VERSION     DAXIFD010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.224"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            54..1223
                     /gene="metZ"
                     /locus_tag="ACFOCN_001978"
     CDS             54..1223
                     /gene="metZ"
                     /locus_tag="ACFOCN_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HFC6971060.1"
                     /translation="MSKKLHPQTLAIRGGKEQTEYREHNQALFLTSSFMWDNAQHAAD
                     LFSKKIKGFTYTRTANPTTAAFEKRIAALEGAERAVATSTGMSAIQAAFFTFLQAGDH
                     VVSSRSLFGTTVGFINNIVTKFGIEVSHVSPTDINEWKAAVKANTKLLFLETPSNPLG
                     EVANLEALAELAHGIGAILVVDNSLLSPIGSQPLKHGADISVSSATKAIDGHGRVMGG
                     VLAGSEELMAQAAVYCNSCGLAMSPFNAWQLLSGVETLSLRMEKQFDNALKIAQWLQA
                     QPQVQAVYYTGLPDHPQAALIRKQQNGGGIVIGFEVADQAAAWKVVDGVELFSRTANL
                     GDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLKQALAR"
     gene            1309..1515
                     /locus_tag="ACFOCN_001979"
     CDS             1309..1515
                     /locus_tag="ACFOCN_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2788 domain-containing protein"
                     /protein_id="HFC6971061.1"
                     /translation="MDEAVFADWALKICLTGLIIFLGFIVWNLGKESKAGKFGIAILF
                     LVLGLGVFGFVFKELLIKFLVLPK"
BASE COUNT          440 a          488 c          474 g          429 t
ORIGIN      
        1 taaacaacgg gcgcacgctc cgttgccgaa cggataaaac cgaggaatta ccgatgagca
       61 aaaaactcca tccgcaaacg ctcgccatac gcggcggcaa agaacaaacc gaataccgcg
      121 aacacaatca ggccttgttc ctgaccagca gcttcatgtg ggacaacgcc caacacgccg
      181 ccgatttgtt ttcaaaaaaa atcaaaggct tcacttatac ccgtaccgcc aacccgacca
      241 cagccgcctt tgaaaaacgc atcgccgctt tggaaggtgc ggaacgcgcg gttgccactt
      301 cgaccggcat gtccgcgatt caggcggcgt ttttcacctt tttgcaggcg ggcgaccatg
      361 tggtttccag ccgcagcctg ttcggcacga ccgtcggctt tatcaataac atcgttacca
      421 aattcggcat cgaagtgagc cacgtgtcgc cgactgatat aaacgaatgg aaagccgccg
      481 tcaaagccaa taccaaactg ctgtttttgg aaacgccgtc caaccccttg ggcgaagtgg
      541 ccaacttgga ggcattggcg gaattggcgc acggcatcgg cgcgattttg gtggtggaca
      601 acagcctgct gtcgcccatc ggctctcagc ctttgaagca cggcgcagat atttccgttt
      661 cttccgcaac caaagccata gacggacacg gacgcgtgat gggcggcgtg ttggcgggtt
      721 cggaagaact gatggcgcag gccgccgttt actgcaactc ttgcgggctg gcgatgtcgc
      781 cgtttaacgc gtggcagttg ttgagcggcg tggaaaccct gtcgctgcgt atggaaaaac
      841 agttcgacaa cgccctgaaa atcgcacaat ggctgcaagc gcagccgcag gttcaagccg
      901 tgtactacac cggattgccc gaccatccgc aggcggcgct tatccgcaaa cagcaaaacg
      961 gcggcggcat cgtcatcggc tttgaagtcg ccgaccaagc agccgcgtgg aaagtcgtgg
     1021 acggcgtgga actcttttcc cgtaccgcca acctcggcga cgtgcgctcg accatcaccc
     1081 atccgtggac aaccacgcac ggcaggatgc agcccgaaga aaaactcgcc gccaacatcc
     1141 gccccggatt ggtgcgcctg tcggtcggtt tggaatatgt tggcgatttg attgacgatt
     1201 tgaaacaggc actcgcacgc tgattgcgtg tttcagacgg cattggacag cagatgccgt
     1261 ctgaaaccct tatcgcgtat ggcatacaca tcaacaatag gaaaaaatat ggatgaagcg
     1321 gtttttgccg attgggcgtt gaaaatctgc ctgaccggtt tgattatttt tttgggtttt
     1381 atcgtttgga atttgggcaa ggagtccaaa gcgggcaaat tcggcatcgc cattttgttt
     1441 ttggttttgg gcttgggcgt gttcggtttt gtatttaaag aactgctaat caagtttttg
     1501 gtattgccca aataggctgc cgcctgtcaa aatgctgtct gaaatcataa aaagtaatct
     1561 gcaccctaaa agtttgattt aaccgccaac tgattaaggt gcggattttt atgacaaaat
     1621 aaaaatcatc tttccgcagt cattcccacg gacgcgaaag tctgtctttt tgaatcccgg
     1681 ataattttac atcgtcattc ccgcgcaggc gggaatctag tctgttcggt ttcggtcatt
     1741 tacgataaat tcctattgct tttcatttcc tgattcccac ttccgtggga atgacggcgg
     1801 agcggataaa ttctcgcaat ctaaaacctc g
//
LOCUS       DAXIFD010000225         1825 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.225, whole genome shotgun sequence.
ACCESSION   DAXIFD010000225 DAXIFD010000000
VERSION     DAXIFD010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.225"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(260..706)
                     /gene="smpB"
                     /locus_tag="ACFOCN_001980"
     CDS             complement(260..706)
                     /gene="smpB"
                     /locus_tag="ACFOCN_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HFC6971062.1"
                     /translation="MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESY
                     IYWKKDAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVP
                     LDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR"
     gene            complement(761..1771)
                     /gene="waaF"
                     /locus_tag="ACFOCN_001981"
     CDS             complement(761..1771)
                     /gene="waaF"
                     /locus_tag="ACFOCN_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HFC6971063.1"
                     /translation="MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSM
                     AVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAIIALAT
                     GIGKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHPSQEDFDGHSGFPEFSID
                     ERRREISVETFGLDIGKPVLAFCPGAEFGPAKRWPTRYFAELGKHYSAAGWQVWLFGS
                     QKDDEIAEEINCLSDGMCVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKV
                     VAVYGSSSPTHTPPLSDRAKIVSLHLECSPCFKRECPLGHTDCLNRLYPEKIVQAVEE
                     AV"
BASE COUNT          471 a          526 c          386 g          442 t
ORIGIN      
        1 ggtaaacgtt tgctttttgc tattttgtca agccagtttg aaaatgtgta taattgccct
       61 cgttatttac aaaaatttca ggaaaaatga ccgcacttta cccttggcta atgccaattt
      121 atcatcaaat tgctcaaacc tttgacgaag gtttggggca tcatgctgtg ctgattaaag
      181 cggatgctgg tttaggtgta gaacgtttac acatcaggcg gcagccttgc ccataccctc
      241 tgaagcactg tttccacaat cagcgcgtat gcttaatcaa ccgctgtttc tcgcgtttcc
      301 aatccgcctc tttcatactc tgacgtttgt cgtgctgttt cttacctttt gccaaaccga
      361 tttccatctt gatttttccg cgcgaaaaat gcaaatccag cggcacgatg gtgtagccgg
      421 cacgttcggt tttgccgatt aatttgttga tttccgactg gttcaacaag agcttgcgcg
      481 gacgtacggc atctggttta atgtgtgtcg aggctgtggg caaagccgta atatggcagc
      541 cgaccagata aaacgcgtct tttttccaat agatataact ctctttaagc tgtacgcgcg
      601 cggcgcggat tgctttgact tcccagcctt ccaagaccaa accggcttca atccggtctt
      661 caatgaaaaa atcgtgaaat gcttttttat tgttcgcaat agccataaac atcctatcaa
      721 tatccgccgt cagacggcat aaacccgaaa acagaaccca tcataccgcc tcttcaaccg
      781 cctgcacaat cttctcggga tacagcctgt tgaggcagtc ggtatgcccc agcggacatt
      841 cccgcttaaa acagggcgaa cattccaagt gcaggctgac gattttcgcc ctgtcgctca
      901 aaggcggcgt atgcgtcggg ctggaagaac cgtaaaccgc caccaccttc ctgcccaatg
      961 ccgccgccaa gtgcatcagc ccgctgtcgt tgcacacgac cgtgtccgcc aacgacagca
     1021 aatccattgc ctgcgacaaa tcggtctttc cgcataaatt cacacacata ccgtctgaaa
     1081 ggcagttgat ttcctcggca atttcatcat ctttttgcga accgaacagc caaacctgcc
     1141 aacccgccgc cgaataatgt ttgcccaact cggcaaaata ccttgtcggc caacgctttg
     1201 ccggcccgaa ttccgcaccc ggacaaaaag ccagaacagg ctttccaata tccaagccaa
     1261 aggtttcgac agaaatttcc cgccgccgtt catcaatgga aaactcgggg aatcccgaat
     1321 gcccgtcaaa atcctcctgg ctcggatgcg cgagagccgt atatctgtcc accatcaaag
     1381 gcagacgttc cttatccagc ctgcgtatat cgttcaacag aaaataacgg ctttcaccga
     1441 cataacccgt ccttttaccg atacctgtcg ccagcgcgat gattgccgat ttcaaagaac
     1501 cgggcaacac gataacctga tcgtatccgc gccgccccaa atccctaccg acccgccagc
     1561 ggcgtttcaa ctccaacgca ccgtgtccga acggattttc aagaatctca ttcacttccg
     1621 gcatacgctc aaacaccgcc atcgaccact tcggtgcgaa cacatcaatc gtgcaaccgg
     1681 ggtgaagttc cttcaaacgg cggaacaagg gctgggtcat cacgcagtcg cctatccaac
     1741 tgggagaaat aatcaggatt ttgatggaca taacaagaaa ccgaaatcag acaggcagaa
     1801 ttttaccgcg aaaccgttgg aaaac
//
LOCUS       DAXIFD010000226         1798 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.226, whole genome shotgun sequence.
ACCESSION   DAXIFD010000226 DAXIFD010000000
VERSION     DAXIFD010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.226"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            116..523
                     /locus_tag="ACFOCN_001982"
                     /pseudo
     CDS             116..523
                     /locus_tag="ACFOCN_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212999.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fe(3+)-pyochelin receptor"
     gene            667..1725
                     /gene="dinB"
                     /locus_tag="ACFOCN_001983"
     CDS             667..1725
                     /gene="dinB"
                     /locus_tag="ACFOCN_001983"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HFC6971064.1"
                     /translation="MSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICA
                     ASYEARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLS
                     LDEAYLDVTLNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN
                     GQFVLPPHKVMAFLETLPLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGR
                     YGYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITR
                     KNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLIARVPPQTEDAFRLI
                     GIGVGHLVPKNQQQDLWA"
BASE COUNT          426 a          484 c          494 g          394 t
ORIGIN      
        1 gtcgatgtgc ttggcaatca tggcttgggc ggtttgccgg aagaaggtgc tcatgagaaa
       61 tcccctaaat gtcttggtgg gaatttaggg gattttgggg aattttgcaa aggtctcagg
      121 gtatacctac aataagagca ggtataggaa tgcagccgaa gtcaacgccg aacgccttgc
      181 caaaaattcc agtgcagacc cgtacaactt cagcaatttc acacccgtgc acatattccg
      241 tttcggaacg agcttccata taccgaatac ggggctgacc gtcggcggcg gcgtgtccgc
      301 acaaagcggc acaagcagcc tgtacaacat ccgtcagggc ggctacgggc tgatagacgg
      361 tttcgtccgt tacgaattgg gcaaacacgc caaattgagc ctcatcggta cgaacttaaa
      421 cggacgcact tattttgaga acaactacaa ccgtacgcgc ggcgcaaaca acttctatgg
      481 agagccgcgc actgtcagca tgaaactgga ttggcagttt taattgaaaa ccgtagtttt
      541 gcggatgccg tctgaaacag ggtatgtttc agacggcatt tttatggagg caggcctatc
      601 ggggcgtata tttggaattt gcccgatgcc ggcagtagaa tatccctttt atcctcagaa
      661 gagccgatgt cttcacgcaa aattatccac atcgacatgg acgcattcta cgcatcggta
      721 gagctgcgcg aacagccgca tttgaaaggg cggccggtgg tcgtcgcgtg ggagggcgcg
      781 cgttcggtga tttgcgccgc atcgtatgag gcacggcagt tcgggctgca ttccgcgatg
      841 tcggtggcaa cggcgaaaag gctgtgtccg caagcggtgt atgtgccgcc gcatttcgat
      901 ttgtaccgtc aggtttccgc gcagattcac gccgtattca ggcgttatac cgatttaatc
      961 gaacccttgt cgctggacga agcctatctt gacgttaccc ttaatttcaa aaacatccct
     1021 tacgccagcg aagttgccaa agaaatccgt gccgccattt ttgcggaaac aggtttgact
     1081 gcatccgcag gcatcgcgcc gaacaaattt ctggcgaaaa tcgcgtcgga ctggcgcaag
     1141 ccgaacgggc agtttgtgtt gccgccgcac aaagtcatgg catttttgga aaccctgcct
     1201 ttgggcaaaa tccccggcgt gggcaaggta acgctgaaaa aaatgcagtc gctgggtatg
     1261 cggacggcgg gcgacttgcg ccgtttcgag cgcggcgaac tcttaaacca tttcggacgc
     1321 tacggatacc gcctctatga tttggtgcgc ggtacggatg aacgccccgt caaagccgaa
     1381 cgcgaacgcc tccaaatctc cacagaaatc accctgcctg aagacctgcc gctcgagcag
     1441 gctgccggac acctgcccca tcttgctgaa gacctgtggc ggcaaatcac gcgcaaaaac
     1501 gtcgaagccc aaagcgtaac gctcaagctg aagacctacg atttccgcat catcacgcgc
     1561 acactgactt attcctccgt attgcccgac tgcgcagctc tgctgcaggc tgcgcaaatg
     1621 ttgatagcgc gcgtcccgcc gcagacggaa gacgcgttcc gccttatcgg tatcggcgtg
     1681 gggcatcttg tgccgaaaaa ccagcagcag gatttgtggg cgtaaaccgc tttacgcgcg
     1741 ccgtccaaaa aacatgccgt ctgaacggtt ttcagacggc atggctgctt tataatgg
//
LOCUS       DAXIFD010000227         1763 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.227, whole genome shotgun sequence.
ACCESSION   DAXIFD010000227 DAXIFD010000000
VERSION     DAXIFD010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.227"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            114..1487
                     /locus_tag="ACFOCN_001984"
     CDS             114..1487
                     /locus_tag="ACFOCN_001984"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6971065.1"
                     /translation="MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLL
                     AAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSY
                     IKNLPLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLD
                     EADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQN
                     TTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSA
                     QAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGLDIAELPFVINYEMPAQPEDYV
                     HRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKP
                     EKTEMREPRQRNRYESARAQREKNTRPETTANDAGAACGKIAGRSRRSRREHRTCALL
                     QPRYGVK"
     gene            1667..>1763
                     /locus_tag="ACFOCN_001985"
     CDS             1667..>1763
                     /locus_tag="ACFOCN_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009118462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HFC6971066.1"
                     /translation="MSTQFDVAVIGAGPAGSVASALLRKKGYSGLN"
BASE COUNT          448 a          570 c          417 g          328 t
ORIGIN      
        1 tgtactgtct gcggctcgcc gccttgtcct gatttttgtt aatccactat atttccccgt
       61 cctatcggtt tcccgtttca gacgacataa ggtctgaaag aaagactaca attatgagta
      121 atccattttc ctctttaggt ttgggtacgg aactcgtttc cgcactgacc gcgcaaggtt
      181 acgaaaaccc gacgcccatc caagccgccg ccattcccaa agcactcgcc ggtcatgatt
      241 tgctagccgc cgcgcaaacc ggcacaggca aaaccgccgc ctttatgctg cccagtctgg
      301 aacgcctcaa acgttacgcc accgccagca cctcgcccgc gatgcacccc gtgcgtatgc
      361 tcgtccttac ccccacgcgc gaacttgccg accaaatcga ccaaaacgtg cagtcctaca
      421 tcaaaaacct gccgcttcgc cacaccgtct tgttcggcgg tatgaatatg gacaaacaga
      481 ccgccgattt gcgtgccggc tgcgaaatcg tcgtcgccac cgtcggacgg ctgctcgacc
      541 acgtcaaaca aaaaaacatc agtttgaaca aagtcgaaat cgtcgttctg gacgaagcag
      601 accgcatgtt ggatatgggg tttatcgacg acatccgcaa aatcatgcag atgctgccca
      661 aacaacgcca aaccctgctc ttttccgcta ccttctccgc accgatacgc aaactggcgc
      721 aagacttcat gaacgcgccc gaaaccgtcg aagtcgccgc gcaaaacacc accaacgcca
      781 acgtcgaaca acacatcatc gccgtcgata ccattcagaa gcgcaacctg ctcgaacggc
      841 tgattgtcga tttgcatatg aaccaggtca tcgtgttctg caaaaccaaa caaagcgtcg
      901 accgcgtaac gcgcgaactg gtgcgccgca acctgtccgc acaggcgata cacggcgacc
      961 gttcccaaca aagccggctc gaaacactca acgccttcaa agacggcagc ctgcgcgtcc
     1021 tcgtcgccac cgacatcgcc gcgcgcgggc tggacattgc cgaactgccc ttcgtcatca
     1081 attacgaaat gcccgcccag cccgaagact acgtccaccg catcgggcgc acggggcgcg
     1141 cgggcgcgga cggcgtggcg atttccctga tggacgaatc cgaacagaaa atgtttgaat
     1201 ccattaaaga gctgaccggc aacaagctgc tcatcgagcg catcgagggc ttcgagccgc
     1261 aatggtggga acagggcggc gcaaaaccgg aaaaaaccga aatgcgcgaa ccgagacaac
     1321 gcaaccgcta cgaatccgcc agggctcagc gcgaaaaaaa tacccgaccg gaaaccacgg
     1381 caaacgatgc gggcgcggct tgcggaaaaa ttgccggacg cagccgccga agccgtcggg
     1441 aacaccggac gtgcgccctg ctccaaccgc gttacggcgt aaaataaccc tgaaaatcaa
     1501 atgccgtctg aacatttccc gtttcagacg gcatttttca aaccggactg acgcattggg
     1561 agcaaccgcc cgcaccggat aaatttcttc cgcaaacagt ttcagacggc atttgctgcc
     1621 tgtacaatat catttccttt tccactcaaa ccatcaggat ttcccaatgt ccacccaatt
     1681 cgatgtcgcc gtaatcggcg caggtccggc aggctcggtc gcatccgccc tgctccgcaa
     1741 aaaaggttat agtggattaa att
//
LOCUS       DAXIFD010000228         1756 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.228, whole genome shotgun sequence.
ACCESSION   DAXIFD010000228 DAXIFD010000000
VERSION     DAXIFD010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.228"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(114..770)
                     /locus_tag="ACFOCN_001986"
     CDS             complement(114..770)
                     /locus_tag="ACFOCN_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HFC6971067.1"
                     /translation="MKNKSKVWDFPTRLFHWLLAASLPFMWYSAKTGGDMLQWHTRVG
                     LFILFLLVFRLCWGIWGSDTARFSRFVRGWSGIREYMKNGIPEHVQPGHNPLGALMVV
                     ALLAAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAIH
                     IAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKTALAAALSVAALVAAAILLLS
                     "
     gene            835..1725
                     /locus_tag="ACFOCN_001987"
     CDS             835..1725
                     /locus_tag="ACFOCN_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HFC6971068.1"
                     /translation="MFPVFHLSGESRRRMLQAASRFPYVFKARAEDSHKGTFGTLAVV
                     GGSAGMRGAPVLAASAAMYLGCGKVWAGFNQDALPFAVIAGFPEIMLDTADGLTKRQG
                     INAWMVGCGLGTDKAAVGTLAGILAEHTDKPVLLDADALNILSTDAETRNLARGCKNL
                     ILTPHPAEAARLLGTTVAQVQADRTAAVRKIRAIFGATVVLKGHKTLVASPDTEIYVN
                     ESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGVWLHGAAADVIKESAGIAAGL
                     LAGEISPAARWLRNRITESM"
BASE COUNT          394 a          417 c          580 g          365 t
ORIGIN      
        1 ggtttgggac ggaaaaacgg cctgaagccg tttcgggcat tcagaccgtt tgcgcggaga
       61 ggggatgccg tccgaagggc gaaaagggct tcagacggca ttgatgtcgg gtttcaggac
      121 aggagcagga tggcggctgc gacaagcgcg gcaaccgata atgcggcggc aagcgcggtt
      181 ttgccggcaa agcggattga ggttttgcct tcgatgtatt tgaagccggt tatcatcggg
      241 aggacgaggt ttttcttttt gaacacgcgg tatgcggcga cggcggcgat atgaatggcg
      301 gaaaaaacgg cgagcagctt gaaaaagttg aggtggattt tccgcataag gctgcccgta
      361 tgctcggaaa ccaaatggtt gaggtagccg ttggtgctga aggtgttttc atcggcggca
      421 aaaagccctg tgccgacttg aaatgagacg gcggccaaaa gcgcgacgac catcagtgcg
      481 cccaaggggt tgtgtccggg ttggacgtgt tcgggaatac cgtttttcat atactctctg
      541 atacccgacc atccgcggac gaaacgggag aaacgggcgg tatcgctgcc ccaaatgccc
      601 cagcagaggc ggaatacgag caggaaaagg ataaacagcc cgacgcgcgt gtgccattgc
      661 agcatatcgc cgccggtttt cgcgctatac cacataaagg gtagggatgc ggcaagcagc
      721 cagtggaaaa ggcgggtggg gaagtcccag actttgcttt tgtttttcat aatcggtttc
      781 cggcggtaga atcggtttgt tttcgagcct taattttaac cgattggagg ggaaatgttt
      841 cccgttttcc atctttcagg cgaaagccgc cgccggatgc ttcaggcggc atcgcgtttt
      901 ccctatgttt tcaaagcccg tgcggaagat tcgcacaaag ggactttcgg cacgctcgcc
      961 gtagtcggcg gatcggcagg gatgagaggc gcgcccgtat tggcggcatc ggcggcgatg
     1021 tatctcggct gcggcaaggt gtgggcgggt ttcaatcagg atgcgcttcc gtttgccgtc
     1081 attgccggtt ttcccgaaat tatgttggac acggcagacg gtttgaccaa gcgtcaaggc
     1141 ataaacgctt ggatggtagg ttgcggcctg ggtacggata aagcggcggt cggaacgctt
     1201 gccggaattt tggcggaaca cacggacaag cccgtccttt tggatgcgga cgcgctgaac
     1261 atattatcaa ccgatgccga aacccgaaat ctggcgcgcg ggtgtaaaaa cctgatttta
     1321 acgccacacc ccgccgaagc cgcgcgcctg cttggaacga cggttgcaca ggttcaggcg
     1381 gatcggacgg cggcagtgag gaagataagg gcaattttcg gcgcaaccgt ggttttaaag
     1441 gggcacaaaa cattggttgc ctcacccgat acggaaatct atgtcaacga aagcggcaac
     1501 gcgggattgg caacggcggg cagtggcgac gtattgggcg gcatcatcgg cagtctgctc
     1561 gcacagggcg tgccggtttt tgaagccgcc tgcgcgggcg tgtggctgca cggcgcggcg
     1621 gcggatgtca taaaagaatc ggcaggcatt gcggcggggc tgttggctgg cgaaatctcc
     1681 ccggcggcaa ggtggctgcg caaccggata actgaaagta tgtaagaaga tatagtggat
     1741 taacaaaaac cagtac
//
LOCUS       DAXIFD010000229         1729 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.229, whole genome shotgun sequence.
ACCESSION   DAXIFD010000229 DAXIFD010000000
VERSION     DAXIFD010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.229"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            350..1654
                     /locus_tag="ACFOCN_001988"
     CDS             350..1654
                     /locus_tag="ACFOCN_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium channel activity
                     [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HFC6971069.1"
                     /translation="MKKHIWAASLLPASLSAEPLNWWKPYSAVNSGDTAWVMTAAALV
                     LLMTLPGLALFYGGMVRKKNLLSTMMHSFSIATLVGILWVAVGYSLAFTPGNAFIGGL
                     GRVFLSGMQIDAAAQMLTVSPNAPTVPEPVFMFFQMTFAIISTAIITGAFAERMKYSA
                     MMLFSGIWFLLVYVPGAHWVWGGGFMSKGGVLDYAGGTVVHINAGIAGLVAALVLGRR
                     IGYGREAMPPHNMAMTLIGAAMLWFGWFGFNAGSALAADAAAGMAMAVTQVSAVFGAA
                     GWLACEKIAGHKPSALGLASGAVSGLVGITPAAGFTGPSGAAAIGILTAAACFVSVTV
                     VKHKLRYDDSLDAFGIHGFGGLVGGILTGIFFDNRIFGGDAAVWQQLWIQVKDGFVMA
                     AYSGLMSWAILKVVGKICGGLRVGKDVEREGLDLNIHGERVE"
BASE COUNT          352 a          433 c          513 g          431 t
ORIGIN      
        1 aaatttttaa tatattaatc aataaattaa ttttataaaa taaaaatatt gtcaacaata
       61 ttttgcctta tcgcccaaac ctctgtatat tttcctacag taaattgttg acaatccata
      121 cgcccacata tgcgccgcct aaggataaat cctcccgccg gacaacgggt gcaagggatt
      181 ggatgcgata tttccatatt caaacaaggg atttgtttca cgcacagggc ggcacatcgg
      241 caaaatcccc gcgccgcccc ggtccggcag ggcttgcgtc cctcccggac aagccccgac
      301 cccgcctttc cgaaagacgg gctcaaccat taaggaaact ttaatcaaaa tgaaaaaaca
      361 catatgggcg gcatctttgc tgccggcatc cctatcggca gaacctttaa actggtggaa
      421 gccttattcc gccgtcaatt cgggcgatac cgcctgggtg atgactgcgg ctgccttggt
      481 actgttgatg acgcttcccg ggctggcttt attctacggc gggatggtgc ggaaaaaaaa
      541 cctgctctcg acgatgatgc acagcttttc catcgcgaca ttggtgggca tcctttgggt
      601 cgccgtcggc tattctttag cgttcacgcc gggaaatgcc tttatcggcg gtttggggcg
      661 cgtattttta agcgggatgc agatagacgc tgccgcacag atgctgaccg tgtcgcccaa
      721 tgcgccgact gttcccgaac cggtatttat gttttttcag atgacgtttg ccattatttc
      781 gaccgccatt attaccggcg cgtttgccga acggatgaaa tattcggcaa tgatgctgtt
      841 ttcgggcata tggtttttat tggtttatgt gccgggagcg cattgggtgt ggggcggcgg
      901 ctttatgagc aagggcggcg tattggatta tgccggcggt acggtggtgc acatcaatgc
      961 cggtatcgcg ggactcgtcg ccgccttggt tttgggcagg cgcataggct acgggcgcga
     1021 ggcgatgcct ccgcacaata tggcgatgac actgatcggc gcggcaatgt tgtggttcgg
     1081 ctggttcggc tttaacgccg gatcggcgct tgcggcagac gcggcggcgg gtatggcgat
     1141 ggcggtaacg caggtgtcgg ccgtattcgg cgcggcaggc tggcttgcct gcgaaaaaat
     1201 agcgggacac aaaccttccg ctttggggct ggcttccggc gcggtttccg gtctggtcgg
     1261 catcacccct gccgccggct ttaccggccc gtcgggcgcg gccgccatcg gtatattgac
     1321 tgccgccgcg tgctttgtgt ccgtcaccgt cgtcaaacac aaattgcgtt acgatgattc
     1381 tttggacgct ttcggcatac acggattcgg cgggctggtg ggcggaatat tgaccggcat
     1441 ctttttcgac aaccgcattt tcggcgggga tgcggcagtt tggcagcagt tgtggataca
     1501 ggtaaaagac gggttcgtta tggcggcata cagcgggctg atgagttggg cgattttgaa
     1561 ggtcgtgggg aaaatctgcg gcggcctgcg cgtcggcaag gatgtcgaac gcgaaggttt
     1621 ggatctgaat atccacggcg aacgcgtgga ataagggcgg ttatgccgtc tgaagcctga
     1681 aaatcgggtt tcagacggca tttttcacgt ttgccgccga tggataaac
//
LOCUS       DAXIFD010000230         1679 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.230, whole genome shotgun sequence.
ACCESSION   DAXIFD010000230 DAXIFD010000000
VERSION     DAXIFD010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.230"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(75..1496)
                     /locus_tag="ACFOCN_001989"
     CDS             complement(75..1496)
                     /locus_tag="ACFOCN_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HFC6971070.1"
                     /translation="MRHLPLFSLMLFPASVYAADLDGANLNLLWSLPFALILLSIALG
                     PLFFSHTWHHHYGKITAFWTLLFLIPFSLVFGASAGIHTVAHALVEEYIPFILLLLAL
                     YTISGGILVWGDLNGTPKLNTALLAVGTALASIMGTTGAAMLMIRPLLKANQNRTRRV
                     HIVIFFIFLVANIGGGLTPLGDPPLFLGFLKGVDFMWTVKHMFAPVLISTAVLLTAFY
                     FIDNRFFKQESIAQDTPAQQEKPEKIAIFGKWNFLLLSGVVGAVLMSGLWKPEHPGFE
                     ILGSRYALQNLVRDVILIALTAVSMAITPKQVRAGNEFNFEPIAEVGKLFLGIFITIF
                     PVLSILKAGEAGALGGVVSLVHDTAGHPINTMYFWMSGILSAFLDNAPTYLVFFNMAG
                     GDAQALMTGTLFHSLLAVSMGSVFMGALTYIGNAPNFMVKAIAEQRGVPMPTFFGYMM
                     WSVAFLTPVFIVHTLIFFVFKLL"
BASE COUNT          437 a          379 c          515 g          348 t
ORIGIN      
        1 tgtcggaagg ggggatattg atttgattat gccggaattt aaaatgccgt ctgaatgttc
       61 agacggcata gcgtttacag cagtttgaaa acgaaaaaga taagggtatg tacgatgaag
      121 acgggtgtca ggaaggcgac cgaccacatc atatagccga agaaagtcgg catcggtacg
      181 ccgcgctgtt cggcaatggc cttgaccatg aagttcggtg cgttgccgat gtaggtcagt
      241 gcgcccatga ataccgaacc catagaaacc gccagcagcg aatgaaacag ggtacccgtc
      301 atcaaggctt gggcatcgcc gcccgccata ttgaaaaaaa cgagataagt gggcgcgtta
      361 tccaagaatg ccgacaatat gccgctcatc caaaaataca tcgtattaat cggatgacct
      421 gccgtatcgt gaaccagcga taccaccccg cccagcgcgc ctgcctcgcc tgctttcaga
      481 atgctcagga cgggaaagat ggtgatgaag atgccgagga agagtttgcc cacttcggcg
      541 atgggttcaa agttgaattc gttgcctgcg cggacttgtt tgggcgtgat tgccatagat
      601 acggcggtca atgcaatcag gatgacatcg cggacgaggt tttgcagggc gtaacggctg
      661 ccgaggattt caaatcccgg gtgttcgggt ttccaaaggc cggacattag aaccgcgccg
      721 accacgcccg aaagcaggag gaagttccat ttgccgaaga tggcgatttt ttcgggtttt
      781 tcctgttgtg ccggcgtatc ttgtgcaatg ctttcctgtt tgaagaaacg gttgtcgatg
      841 aaatagaagg cggtcaacag gacagcggtg ctgatcagga cgggggcgaa catatgtttg
      901 accgtccaca tgaaatctac gcctttgagg aagccgagga agagtggggg gtcgcccaaa
      961 ggggtcagac cgccgccgat gtttgcaacc aggaaaatga agaagatgac gatgtgcacg
     1021 cggcgggtac ggttttggtt ggctttcagc agcggacgaa tcatcagcat tgctgcgccg
     1081 gtcgttccca tgatagaggc aagtgccgta ccgacggcaa gcagggcggt gttgagcttg
     1141 ggtgtgccgt tcaagtcgcc ccaaaccaaa atgccgcctg aaatggtgta cagggcaagc
     1201 agcagcagga tgaaggggat gtattcttca acgagtgcgt gtgcgacggt atggataccg
     1261 gcggacgcgc caaaaaccaa actgaacggg atgaggaaga gcaatgtcca aaaggcggtg
     1321 attttgccgt aatggtgatg ccaggtatgc gaaaaaaaca agggacccaa tgcgatagac
     1381 agcaaaatca gggcaaaggg caggctccac agcaggttta ggtttgcgcc gtccaaatct
     1441 gcggcgtaaa ccgatgcggg gaaaagcatt agtgaaaaca ggggtaggtg gcgcatcgtg
     1501 tttcctcgat tcaagcactg ccttgcgcgg cgcgtgggag tgatacaggc accgtgccgc
     1561 ccggacatag gcggactgtg ctgcctgttt gtttttgaaa aaagttttcc gattgattgt
     1621 aaagtaaata atcaggataa accagtttcc caaaccggaa ggcggcggga aggcggatt
//
LOCUS       DAXIFD010000231         1654 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.231, whole genome shotgun sequence.
ACCESSION   DAXIFD010000231 DAXIFD010000000
VERSION     DAXIFD010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.231"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1584
                     /locus_tag="ACFOCN_001990"
     CDS             <1..1584
                     /locus_tag="ACFOCN_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HFC6971071.1"
                     /translation="FAWLWPGVFSHDLWNPAEPAVYTAVEALAGSPTPLVAHLFGQTD
                     FGIPPVYLWVAAAFKHLLSPWAADSYDAARFAGVFFAVVGLTSCGFAGFNFLGRHHGR
                     SVVLILIGCIGLIPTVHFLNPAAAAFAAAGLVLHGYSLARRRVIAASFLLGTGWTLMS
                     LAAAYPAAFALMLPLPVLMFFRPWQSRRLMLTAVASLAFALPLMTVYPLLLAKTQPAL
                     FAQWLDDHVFGTFGGVRHVQTAFSLFYYLKNLLWFALPALPLAVWTVCRTRLFSTDWG
                     ILGVVWMLAVLVLLAVNPQRFQDNLVWLLPPLALFGAAQLDSLRRGAAAFVNWFGIMA
                     FGLFAVFLWTGFFAMNYGWPAKLAERAAYFSPYYVPDIDPIPMAVAVLFTPLWLWAIT
                     RKNIRGRQAVTNWAAGVTLTWALLMTLFLPWLDAAKSHAPVVRSMEASLSPELKRELS
                     DGIECIDIGGGDLHTRIVWTQYGTLPHRVGDVQCRYRIVRLPQNADASQGWQTVWQGA
                     RPRNKDSKFALIRKIGENI"
BASE COUNT          266 a          485 c          481 g          422 t
ORIGIN      
        1 tttgcctggt tgtggccggg tgtattttca catgatttgt ggaatcctgc cgaacctgcc
       61 gtctataccg ccgtcgaagc actggcaggc agccccaccc ccttggttgc ccatctgttc
      121 ggtcaaaccg atttcggcat accgcccgtg tatctttggg ttgccgccgc gttcaaacat
      181 ttgctgtcgc cgtgggctgc cgactcatac gatgccgcac gctttgcagg cgtgtttttc
      241 gccgttgtcg gactgacttc ctgcggcttt gccggtttca actttttggg cagacaccac
      301 gggcgcagcg ttgttttaat ccttatcggc tgtatcgggc tgattccgac cgtacacttt
      361 ctcaatcccg ctgccgccgc ctttgccgcc gccggactgg tgctgcacgg ttattctttg
      421 gctcgccggc gcgtgattgc cgcctctttt ctgctcggta cgggctggac gctgatgtcg
      481 ttggcagcag cttatccggc agcatttgcc ctgatgctgc ccttgcccgt actgatgttt
      541 ttccgtccgt ggcaaagcag gcgtttgatg ttgacggcag tcgcctcact tgcctttgcc
      601 ctgccgctta tgaccgttta cccgctgctc ttggcaaaaa cgcagcccgc gctgttcgcg
      661 caatggctcg acgatcacgt tttcggtacg ttcggcggcg tgcggcacgt tcagacggca
      721 ttcagtttgt tttactatct gaaaaacctg ctttggtttg cactgcccgc gctgccgctg
      781 gcggtttgga cggtttgccg cacgcgcctg ttttcgaccg actgggggat tttgggcgtc
      841 gtctggatgc ttgccgtttt ggtgctgctt gccgtcaatc cgcagcgttt tcaggataac
      901 ctcgtctggc tgcttccgcc gcttgccctg ttcggcgcgg cgcaactgga cagcctgagg
      961 cgcggcgcgg cggcgtttgt caactggttc ggcattatgg cgttcggact gtttgccgtg
     1021 ttcctgtgga cgggcttttt cgccatgaat tacggctggc ccgccaagct tgccgaacgc
     1081 gccgcctact tcagcccgta ttacgttccc gacatcgatc ccattccgat ggcggttgcc
     1141 gtactgttca cacccttgtg gctgtgggcg attacccgca aaaacatacg cggcaggcag
     1201 gcggttacca actgggcggc aggcgttacc ctgacctggg ctttgctgat gacgctgttc
     1261 ctgccgtggc tggacgcggc gaaaagccac gcgccggtcg tccggagtat ggaggcatcg
     1321 ctttccccgg aattaaaacg ggagctttca gacggcatcg agtgtatcga cataggcggc
     1381 ggcgacctgc acacgcggat tgtttggacg cagtacggca cattgccgca ccgcgtcggc
     1441 gatgtacaat gccgctaccg tatcgtccgc ttgccccaaa atgcggatgc gtcgcaaggc
     1501 tggcagacgg tttggcaggg tgcgcgcccg cgcaacaaag acagtaagtt cgcactgata
     1561 cggaaaatcg gggaaaatat ataaaaaaca acagattgag ccgaatttct ggattaagtg
     1621 ccggaaatcg cgtataattg cgcgattaaa cctt
//
LOCUS       DAXIFD010000232         1646 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.232, whole genome shotgun sequence.
ACCESSION   DAXIFD010000232 DAXIFD010000000
VERSION     DAXIFD010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.232"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            295..1452
                     /locus_tag="ACFOCN_001991"
     CDS             295..1452
                     /locus_tag="ACFOCN_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HFC6971072.1"
                     /translation="MRKKLTALVLSALPLAAVADVSLYGEIKAGVEGRNIQLQLTEPL
                     QNIQPQVTKRKSRIRTKISDFGSFIGFKGSEDLGEGLKAVWQLEQDVSVAGGGATQWG
                     NRESFIGLAGEFGTLRAGRVANQFDDASQAIDPWDSNNDVASQLGIFKRHDDMPVSVR
                     YDSPEFSGFSGSVQFVPAQNSKSAYTPAHFVQQTPKSQPTLVPAVVGKPGSDVYYAGL
                     NYKNGGFAGNYAFKYAKHANVGRDAFELFLLGSGSDEAKGTDPLKNHQVHRLTGGYEE
                     GGLNLALAAQLDLSENGDKTKNSTTEIAATASYRFGNAVPRISYAHGFDFIERGKKGE
                     NTSYDQIIAGVDYDFSKRTSAIVSGAWLKRNTGIGNYTQINAASVGLRHKF"
BASE COUNT          413 a          393 c          424 g          416 t
ORIGIN      
        1 gccgcgtgtg tttttttatg gcgttttaaa aagccgggac tgcatccggg cagcagcgca
       61 tcggcccgca cgaggtctgc gcttgaattg tgttgtagaa acacaacggt ttttgaaaaa
      121 ataagctatt gttttatatc aaaatataat catttttaaa ataaaggttg cggcatttat
      181 cagatatttg ttctgaaaaa tggttttttg cggagggggg gggataattg aagacgtatc
      241 gggtgtttgc ccgatgtttt taggttttta tcaaatttac aaaaggaagc cgatatgcga
      301 aaaaaactta ccgccctcgt attgtccgca ctgccgcttg cggccgttgc cgatgtcagc
      361 ctgtacggcg aaatcaaagc cggcgtggaa ggcaggaaca tccagctgca gttgaccgaa
      421 ccgctccaaa atattcaacc tcaggttact aagcgcaaaa gccgcatcag gacgaaaatc
      481 agcgatttcg gctcgtttat cggctttaag gggagcgagg atttgggcga agggctgaag
      541 gctgtttggc agcttgagca agacgtatcc gttgccggcg gcggcgcgac ccagtggggc
      601 aacagggaat cctttatcgg cttggcaggc gaattcggca cgctgcgcgc cggtcgcgtt
      661 gcgaatcagt ttgacgatgc cagccaagcc attgatcctt gggacagcaa taatgatgtg
      721 gcttcgcaat tgggtatttt caaacgccac gacgatatgc cggtttccgt acgctacgat
      781 tctccggaat tttccggttt cagcggcagc gtccaattcg ttccggccca aaacagcaaa
      841 tccgcctata caccggctca ttttgttcag cagactccta aaagtcagcc tactctcgtt
      901 ccggctgttg tcggcaagcc ggggtcggat gtgtattatg ccggtctgaa ttacaaaaat
      961 ggcggttttg ccgggaacta tgcctttaaa tacgcgaaac acgccaatgt gggccgtgat
     1021 gcttttgagt tgttcttgct cggcagcggg agtgatgaag ccaaaggtac cgatcccttg
     1081 aaaaaccatc aggtacaccg cctgacgggc ggctatgagg aaggcggctt gaatctcgcc
     1141 ttggcggctc agttggattt gtctgaaaat ggcgacaaaa ccaaaaacag tacgaccgaa
     1201 attgccgcca ctgcttccta ccgcttcggt aatgcagttc cacgcatcag ctatgcccat
     1261 ggtttcgact ttatcgaacg cggtaaaaaa ggcgaaaata ccagctacga tcaaatcatc
     1321 gccggcgttg attatgattt ttccaaacgc acttccgcca tcgtgtctgg cgcttggctg
     1381 aaacgcaata ccggcatcgg caactacact caaattaatg ccgcctccgt cggtttgcgc
     1441 cacaaattct aaatagcggg gcggtgaagc ggatagcttt gtttttgacg gcttgccttc
     1501 attctttgat tgcaatctga ctgccaatct gcttcagccc caaacaaaaa tccggatacg
     1561 gaagaaaaac ggcaataaag acagcaaata ccgtctgaaa gattttcaga cggtatttcg
     1621 cattttcggc ttggtttgca catata
//
LOCUS       DAXIFD010000233         1636 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.233, whole genome shotgun sequence.
ACCESSION   DAXIFD010000233 DAXIFD010000000
VERSION     DAXIFD010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.233"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..380)
                     /locus_tag="ACFOCN_001992"
     CDS             complement(<1..380)
                     /locus_tag="ACFOCN_001992"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971073.1"
                     /translation="MSFGYLIATSQPCELLTKSRGETFSLIMDKMDLWIYFRFCEGNI
                     YTIRKNETESCLTERGGKWLKHIYEFNRGSFIFSYVLLKKRESEENFAEIVLKSIKNN
                     KILTVKVRSGLHFDLRNIYRIEMY"
     gene            complement(438..803)
                     /locus_tag="ACFOCN_001993"
     CDS             complement(438..803)
                     /locus_tag="ACFOCN_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971074.1"
                     /translation="MEKPLLTPPFFLFEDVSLDIFQGLSELEKKIEPQDLMDDVYRAF
                     DSVGNILNFRIVEKEQKGFWVSTKIKTVVFDSADMSSDDLFLKCLQSSYKAYFETEPA
                     GLDKRQLMKTLIQKCGFSC"
     gene            complement(785..1330)
                     /locus_tag="ACFOCN_001994"
     CDS             complement(785..1330)
                     /locus_tag="ACFOCN_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971075.1"
                     /translation="MKKQITAAMMILTMIAPAMANSMDNQIFENQVFHTRADAPMQLA
                     ELSQKEMKETERAFLPLAILGGAAIGMWTQHGFSYATTGRPASVRDVAIAGGLGAIPG
                     GVGAAGKVVSFAKYGREIKIGNNMRIAPFGNRTGHPIGKFPHYHRRVTDNTGKTLPGQ
                     GIGRHRPWESKSTDRSWKNRF"
BASE COUNT          511 a          357 c          248 g          520 t
ORIGIN      
        1 ctatacatct caatacgata aatatttctt aagtcaaaat gcaagcctga ccgtacctta
       61 actgtcaaaa ttttattatt ttttattgat tttaaaacaa tttctgcaaa attctcttcg
      121 ctttctctct tttttagaag cacataagaa aaaataaaac ttccccgatt aaattcataa
      181 atatgtttca accatttgcc tcctctttct gtaagacaag attcagtttc attcttcctt
      241 attgtataaa tatttccttc acaaaatctg aaataaatcc ataaatccat cttatccata
      301 attaaagaaa aagtttcacc tcgagatttt gtcaacaatt cgcaaggttg cgatgttgca
      361 atcaaatagc cgaaagacat tttttacctc atacatggtc gaaatcagtt tctgttagtt
      421 cagaatccat tttttcgtca acaactgaat ccgcattttt gaattaacgt tttcatcagc
      481 tgccgtttat ctaaaccggc aggttcagtt tcaaaataag ccttatatga agactgtaag
      541 catttcagaa aaagatcatc agaagacata tctgccgaat caaatacaac tgttttgatt
      601 ttggtactta cccaaaaccc tttttgctct ttttctacta tacggaaatt cagaatattt
      661 ccaaccgaat caaaagcacg gtaaacatca tccatcaaat cctgcggctc tattttcttt
      721 tccaattccg acaatccttg aaatatatcc aaagacacat cttcaaatag aaaaaaagga
      781 ggagttagaa gcggtttttc catgatctgt ccgtagattt tgattcccaa gggcgatgac
      841 gaccaattcc ctgtccaggc aaagtcttgc ccgtattatc cgtaactcga cgatgataat
      901 ggggaaattt tccaatagga tgacctgttc tattaccgaa aggggctatc cgcatattat
      961 tgccgatttt aatctcacgt ccatatttag caaaggaaac aacctttcct gcggcaccta
     1021 caccaccagg aattgcgcct aatccgccag caatagcaac atctctaaca gaagctggtc
     1081 tgcctgtcgt tgcataacta aaaccatgct gtgtccacat accaatggca gcaccaccca
     1141 agatagccaa tggaagaaac gccctctcag tctccttcat ctccttttga gaaagttccg
     1201 ccaactgcat cggcgcatct gcccgcgtat ggaatacttg gttttcaaat atctgattgt
     1261 ccatgctgtt tgccattgcg ggggcaatca ttgtcagaat catcatcgct gcggtaattt
     1321 gttttttcat aataactcct ttggattaca aggttggaaa atcaaagccc tgcttagaac
     1381 gtatgttgca cacccaattt caataggtaa atcagattgc aaatccagca atttgaatat
     1441 tgtcattgtt ccgtgcaaaa gggattttta ttgatgagtt gtgtactggg tttcagcttg
     1501 gctttttaga taatcttttc acaagaacat acatcaatac tgtcccaaaa aaaagatttg
     1561 ataaatatat tgcaagatat tttgttccat cttcatccga aacagaaacc aatatatttt
     1621 taattaatac atagcc
//
LOCUS       DAXIFD010000234         1613 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.234, whole genome shotgun sequence.
ACCESSION   DAXIFD010000234 DAXIFD010000000
VERSION     DAXIFD010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.234"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..187
                     /locus_tag="ACFOCN_001995"
     CDS             <1..187
                     /locus_tag="ACFOCN_001995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971076.1"
                     /translation="GRLRGYLGKIRRYLGRKQPKTCVGVSAVSEKVKRGTLQRSQPEY
                     VNQISDKLGEFFGRTLK"
     gene            281..652
                     /locus_tag="ACFOCN_001996"
     CDS             281..652
                     /locus_tag="ACFOCN_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971077.1"
                     /translation="MNITLGRNHQINCDEKDLYKFIGYLANHPNDVNLVFEKNSVQGA
                     WGDEGRIQFFSSKAQNIFVPLGFKFTAGVGNIAYRLNCNELFEMLSQLDFVSGGKQNL
                     STIKANIPSQFHAEFDAGANM"
     gene            complement(716..>1613)
                     /locus_tag="ACFOCN_001997"
     CDS             complement(716..>1613)
                     /locus_tag="ACFOCN_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HFC6971078.1"
                     /translation="IKMLSYCGVLSEEKFSRYYRYGVQNNKILQYIANRERNALNFIQ
                     AFSEKLLKDSGIYPKFADFFAQPNKNTFESMKTAFTDLVIQNTPKNTEVEVRRIFTKI
                     INPLAYKHNTFGTRKGSISNTPITLDELYYNRLNWRDKGKEKSLTRKEAQTLFADSAN
                     AANLNYLVNKATKFVKTLHKTSEVQRFDPTEANQAHHIFMASEFPDLASLPENLICLT
                     PNQHFNLAHPSNKTTVIDKHYQRICLMAKLDSIEQDNRANTGNYDYHEFIHVLNTGFN
                     TDQFDVSMSYETLKHRILMFDF"
BASE COUNT          496 a          238 c          326 g          553 t
ORIGIN      
        1 gggaagatta agggggtatt tgggtaaaat taggcggtat ttggggcgaa aacagccgaa
       61 aacctgtgtt ggggtttcgg ctgtcagcga aaaggtgaag agaggtactt tgcaaaggtc
      121 tcaacctgaa tatgtcaacc aaatcagcga caagctcgga gaattttttg gccggacgtt
      181 gaaataggag tttcaattct tttaattcag caatagatac tgataaaatg aaaatcttga
      241 ggaatatatc attaaaatta atttgttaag gagataatta atgaatatta cattaggtcg
      301 aaatcatcaa atcaattgtg atgaaaagga cctttacaag tttatcggct atttggcaaa
      361 tcatcctaat gatgtaaatt tagtctttga gaaaaatagt gtgcaaggtg cttggggtga
      421 tgagggacgt atacagtttt tctcaagtaa agcacaaaat atttttgtgc cactaggatt
      481 taaatttacg gcaggcgtag gtaatattgc atataggcta aattgtaatg agctttttga
      541 aatgctatct cagttagatt ttgtttctgg tggaaaacaa aatctttcaa caataaaagc
      601 aaatattccg tctcaatttc atgcagaatt tgatgctggt gcgaatatgt aaattctaat
      661 ttaaaacacg aatccgcttc atgagattcg tgttttttat ttttaaaata tttatttaaa
      721 aatcaaacat taaaatacga tgcttcaatg tttcgtaact catagaaaca tcaaactgat
      781 ctgtattaaa tcctgtattg agtacatgaa taaattcatg gtaatcgtaa tttcctgtat
      841 tagcacggtt atcttgctca atactgtcca atttcgccat caggcaaata cgctggtaat
      901 gtttgtcaat aacggtggtt ttattgcttg ggtgtgctaa attgaaatgc tggtttggtg
      961 tcaggcaaat cagattttca ggcagcgatg ctaaatcagg aaattcgctt gccataaaaa
     1021 tatgatgtgc ctgattggct tctgtgggat caaaacgttg aacttcgctg gttttgtgta
     1081 gcgttttgac aaattttgtg gctttattaa ctaaataatt caaatttgcg gcatttgcac
     1141 tatcggcaaa tagagtttga gcttctttgc gagtgagcga tttttctttg cctttatctc
     1201 gccagtttag gcgattgtaa taaagctcgt ctaatgtaat gggggtattg gaaatactcc
     1261 cttttcttgt accaaaagta ttatgtttat aagccaatgg attaatgatt ttggtaaaaa
     1321 tacggcgaac ttctacttcg gtatttttgg gtgtgttttg gataacaaga tcggtaaacg
     1381 ccgttttcat actttcaaac gtatttttat taggctgggc aaaaaaatcg gcaaattttg
     1441 gataaatacc actgtctttt aataattttt cactaaatgc ttggatgaaa tttagggcat
     1501 ttctttcacg attggcaata tattgcagga ttttattatt ctgtacgccg taccgatagt
     1561 atctagaaaa cttttcttcg cttaatacgc cacaatagct cagcatttta atc
//
LOCUS       DAXIFD010000235         1599 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.235, whole genome shotgun sequence.
ACCESSION   DAXIFD010000235 DAXIFD010000000
VERSION     DAXIFD010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.235"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..294)
                     /locus_tag="ACFOCN_001998"
     CDS             complement(<1..294)
                     /locus_tag="ACFOCN_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element IS1016C family transposase"
                     /protein_id="HFC6971079.1"
                     /translation="MKITHCKLKKKVQKELLRFFVLEVTARSAADILGIHPNSAVLFY
                     RKIRTVINHHLALAADEVFEGPVEPDESDFGGRRKGRRGRGAAGKVVVFGILKR"
     gene            900..>1599
                     /locus_tag="ACFOCN_001999"
     CDS             900..>1599
                     /locus_tag="ACFOCN_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6971080.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCEPVNEKTDQKAVSAQQAKE
                     QTSFNNPEPMTGFEHTVTFDFQGTKMVIPYGYLARYTQDNATKWLSDTPGQDAYSINL
                     IEISVYYKKTDQGWVLEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERL
                     LTYGVKKMPSAYPEYEAYEDKRHIPENPYFHEFYYIKKGENPAIITHRNNRINQTEED
                     SYSTSVGSCINGFTV"
BASE COUNT          519 a          300 c          313 g          467 t
ORIGIN      
        1 gcgtttcaga atgccgaaaa caaccacttt tcctgctgca ccgcgaccac gtctgccttt
       61 acgccgtccg ccgaaatcgc tttcgtccgg ctcgacaggg ccctcaaaaa cctcatcggc
      121 agccaaggcc aaatgatggt tgataaccgt gcggatttta cggtagaaca gtactgccga
      181 attgggatgg atacccaaaa tatcggcggc agaacgggcg gtaacttcca gcacaaaaaa
      241 acggagcagt tctttctgta cttttttctt taatttgcag tgtgttatct tcatatttcg
      301 agggtaacat atctgctaat ctagtacagc cccaaaatat accaaaaaca gcaaaacaaa
      361 ttgtaaggat acgtataggc tttgtaaagg tagattgtga aaaaagcagt tttttaaacg
      421 aatgaaacgg cttcgggctg aaatatatgc tgatgccctg tccttcccgt atatcttgtg
      481 tgttgtcaaa gtgcaggctg ctttgaaatt ggcattacag tcgatgaacc accattttgc
      541 tttatttcag cgggcttgag atgtgtataa gaatattgtt ttgaataaat ttaaagaaaa
      601 tgataatcgt tattgacgat ttttaaagga aagcgtagag tgccaattct atgaagcaat
      661 acggtaagta acaatgaaaa tatctactgc ttgggtatag agcatatttc acaacccgta
      721 actattcttg cggaaacaga gaaaaaagtt tctcttctat cttggataaa tatatttacc
      781 ctcagtttag ttaagtattg gaatttatac ctaagtagta aaagttagta aattattttt
      841 aactaaagag ttagtatcta ccataatata ttctttaact aatttctagg cttgaaatta
      901 tgagaccata tgctactacc atttatcaac tttttatttt gtttattggg agtgttttta
      961 ctatgacctc atgtgaacct gtgaatgaaa agacagatca aaaagcagta agtgcgcaac
     1021 aggctaaaga acaaaccagt ttcaacaatc ccgagccaat gacaggattt gaacatacgg
     1081 ttacatttga ttttcagggc accaaaatgg ttatccccta tggctatctt gcacggtata
     1141 cgcaagacaa tgccacaaaa tggctttctg acacgcccgg gcaggatgct tactccatta
     1201 atttgataga gattagcgtc tattacaaaa aaaccgacca aggctgggtt cttgagccat
     1261 acaaccagca aaacaaagca cactttatcc aatttctacg cgatggtttg gatagcgtgg
     1321 acgatattgt tatccgaaaa gatgcgtgta gtttaagtac gactatggga gaaagattgc
     1381 ttacttacgg ggttaaaaaa atgccatctg cctatcctga atatgaagct tatgaagata
     1441 aaagacatat tcctgaaaat ccatattttc atgaatttta ctatattaaa aaaggagaaa
     1501 atccggcgat tattactcat cggaataatc gaataaacca aactgaagaa gatagttata
     1561 gcactagcgt aggttcctgt attaacggtt tcacggtac
//
LOCUS       DAXIFD010000236         1593 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.236, whole genome shotgun sequence.
ACCESSION   DAXIFD010000236 DAXIFD010000000
VERSION     DAXIFD010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.236"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(211..1587)
                     /locus_tag="ACFOCN_002000"
                     /pseudo
     CDS             complement(211..1587)
                     /locus_tag="ACFOCN_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224807.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
BASE COUNT          296 a          430 c          510 g          357 t
ORIGIN      
        1 ttcttgccgg atgctgcaaa caacgccggt ttgcattcct gatggcggtg gttttcttag
       61 acgaacgccc gaacacgcag gaatggatag gcttggggct ggttacggcg ggcgtgttga
      121 cgctggcact gaaacggtaa agccgcaaga aataaatgaa atgccgtcta aaaaactgtt
      181 ttcagacggc attttcgttt ctgtccatcc tcagcactcg accacgcgca cggatacggg
      241 gacggctttt ttccggagcg tggcggcgag tccggcaagc gaggtttctt tgtaggtcgc
      301 cttcatatcc cggccggttt gcagcatggt tcggatgact tcgtcgagcg agactttttt
      361 gtccgtgccg tcttccaaaa gcgcgagcgt gccgagtttg agggcttttt cggcggcgat
      421 gccgttgcgc tcgatgcagg ggatttgcac cagtccgccg acggggtcgc aagtcagccc
      481 caaatggtgt tccatcgcca tttcggcggc gttttccact tgtttgggcg tgccgccgat
      541 gacttcggcg tatgcgcccg ccgccatcga acacgctacg ccgacttcgc cctgacagcc
      601 gacatccgca ccggaaatgg aggcgttggt cttgtagagg atgccgattg cgcctgcggt
      661 gagcaggaag ttttcgacgc gttcctgtgt ggcgtgcgga ttgaacttgc ggaaatagtg
      721 caatacggcg ggaatgatgc ctgccgcgcc gttggtcggt gcggtaacga cgcgtccgcc
      781 ggcggcgttt tcttcgttga ccgccatggc gtacaccatc ggccagagct gggtgttgac
      841 gatttcggtt tcgcgcagga ctttgagctt ggcggcaagc tgcggggcgc ggcggcggac
      901 gttcaatcag ccgggcagtt cgccgtccgc acccaagccg cgtttgatgc agccttccat
      961 aacctcggca acggcagcgg cgcggcggcg gatttcggct tcgccgcatc cggcaagcgc
     1021 ggcttcgttt gccaacacga cttcggagat gtcgagccgg ttcagacggc atcgggcaag
     1081 cagttcggcg caactggtat agggataggg aacggctttt tccgtttccg cctgccggtc
     1141 aaaatcttct tcggtaacga caaagccgcc gccgaccgaa taataaacct gttcattcaa
     1201 taccgtgccg tctgaagcat aggcggtaaa acgcaggctg ttggggtgtt tgggcagcac
     1261 ttgattgccg agtatgttca ggtcgcggtc ggggatgaag cggatttctt gcccgttgag
     1321 ccggaggatg tgctgcgtgc ggatgcgttc gaggcgttcg ggaatgccgg caagcgggat
     1381 gtcgtgcggc aggctgcctt ccaaaccgag catcagcgcg tcaaatgtac cgtgtccgta
     1441 tccggtcagt gcgagcgagc cgtaaatgtc gatgacgatg cgaacagcct gtgcatccaa
     1501 acctgccgca aaggcggcgg ctgccttcat cgggccgacc gtatgcgaac tggaaggccc
     1561 gataccgatt ttgaaaatat agtggattaa att
//
LOCUS       DAXIFD010000237         1525 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.237, whole genome shotgun sequence.
ACCESSION   DAXIFD010000237 DAXIFD010000000
VERSION     DAXIFD010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.237"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(73..996)
                     /gene="lpxC"
                     /locus_tag="ACFOCN_002001"
     CDS             complement(73..996)
                     /gene="lpxC"
                     /locus_tag="ACFOCN_002001"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HFC6971081.1"
                     /translation="MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLD
                     GEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEI
                     PIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTI
                     EFDHPAFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIV
                     IDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAV
                     LADETAYDRVEFADSDDLPDAFHELNIRNCG"
BASE COUNT          399 a          357 c          376 g          393 t
ORIGIN      
        1 ttttggtttt ctgtttttgt aggaatgatg aaaatttaag ttttaggaat ttaccggaaa
       61 aaacagaaag cgttatccac aatttctgat gttcagctcg tgaaatgcgt cgggcaaatc
      121 atcgctgtcg gcaaattcca cccggtcgta agccgtttcg tctgccaaaa ccgcgcgcaa
      181 gagtgcgttg ttgatggcgt gtcccgattt gtagccttca aacgcgccga caatcggatg
      241 tccgacgata tacaaatcac cgatggcatc aaggattttg tggcgcacaa actcatcggg
      301 atagcgcaag ccttcaggat tcaggacatc cgtgtcgtca atcacgatgg cgttgttcaa
      361 attgccgccc aaacccagat tgtgggcgcg catcatttcc acttcgtgca taaagccgaa
      421 ggtgcgcgcg cgcgcgattt cgtcgatgta ggatttgccg gcgaaatcga tttcaaaagt
      481 gggcgagctg cggttgaaag ccggatggtc gaattcgatg gtcagcgtta ccttaaagcc
      541 gtcatacggc gtaaagcgca cccatttgcc cgcttctttg atttcgacag gcttgaggat
      601 tttcaaaaaa cgcttttgcg ccttttgatc gaccacgccc gcatcttgca aaaggtaaat
      661 aaacggcagg ctggagccgt ccataatcgg gatttcgggt gcgttcagct caatcagcgc
      721 gttgtcgata ccgtaggcgg acagcgcgga cataatgtgt tcgatcgtgc cgacgcgcac
      781 gcctttgtcg gtaacgatgg tggaggaaag gcgggtatcg ttgatcaaat aaggggtcag
      841 cttgatttgt tcgcccatct cgccgtccaa atcggtacgg cggaaggaaa tcccgctgtt
      901 ttcaggcgcg gggtgcaggg tcagtgcgac ccgttcgccg gaatgcaggc cgactccggt
      961 aacgctgatg gatttcgcca aagttctttg cagcataaac cgcttcctta tcaatggggt
     1021 aagttgggga atgatacgat aaaaccggaa aaacaagcta tgtttttcca tagtatttgc
     1081 caatgtatcc gttttcaata cgtaagctgc ataaaaatgt atagtggatt aacaaaaatc
     1141 aagacaaggc gacgaacccg cctccctcct gaaaaacgca aaaaatgccg tccgaaaacc
     1201 tttcggacgg cattttcgcg tgaaccgtca ttcccacaag gacataaaac caaaacagaa
     1261 aaccaaaaac agaaacctaa aattcgtcat tcccacgaaa gtgggaatct agttcgttga
     1321 gtttcagtta tttagaataa attttgaaac ttaaatcccg tcattcccac gaacctacat
     1381 tccgtcattc ccacgaaagt ggggatccag ttttttgagt ttcagtcatt tccgataaat
     1441 tgccttagta ttgaatgtct agattcccgc ctgcgcggga atgacggcgg cgggttgctg
     1501 ttttttgttt ataaatttct gtaac
//
LOCUS       DAXIFD010000238         1518 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.238, whole genome shotgun sequence.
ACCESSION   DAXIFD010000238 DAXIFD010000000
VERSION     DAXIFD010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.238"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            59..1021
                     /gene="mafA"
                     /locus_tag="ACFOCN_002002"
     CDS             59..1021
                     /gene="mafA"
                     /locus_tag="ACFOCN_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6971082.1"
                     /translation="MQARLLIPILFSVFILSACGTLTGIPSHGGGKRFAVEQELVAAS
                     ARAAVKDMDLQALHGRKVALYIATMGDQGSGSLTGGRYSIDALIRGEYINSPAVRTDY
                     TYPRYETTAETTSGGLTGLTTSLSTLNAPALSRTQSDGSGSKSSLGLNIGGMGDYRNE
                     TLTTNPRDTAFLSHLVQTVFFLRGIDVVSPANADTDVFINIDVFGTIRNRTEMHLYNA
                     ETLKAQTKLEYFAVDRTNKKLLIKPKTNAFEAAYKENYALWMGPYKVSKGIKPTEGLM
                     VDFSDIRPYGNHTGNSAPSVETDNSHEGYGYSDEVVRQHRQGQP"
     gene            1061..>1518
                     /gene="mafB"
                     /locus_tag="ACFOCN_002003"
     CDS             1061..>1518
                     /gene="mafB"
                     /locus_tag="ACFOCN_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6971083.1"
                     /translation="MNLPIQKFMMLFAAAISLLQIPISHANGLDARLRDDMQAKHYEP
                     GGKYHLFGDGRGSVKNRVYAVQTFDATAVGPILPITHERTGFEGVIGYETHFSGHGHE
                     VHSPFDNHDSRSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYP"
BASE COUNT          442 a          358 c          342 g          376 t
ORIGIN      
        1 ttaatccact atatttacaa ttttgataca atttgttttt catcaaagga gaaaatctat
       61 gcaagcacgg ctgctgatac ctattctttt ttcagttttt attttatccg cctgcgggac
      121 actgacaggt attccatcgc atggcggagg taaacgcttt gcggtcgaac aagaacttgt
      181 ggccgcttct gccagagctg ccgttaaaga catggattta caggcattac acggacgaaa
      241 agttgcattg tacattgcaa ctatgggcga ccaaggttca ggcagtttga cagggggtcg
      301 ctactccatt gatgcactga ttcgtggcga atacataaac agccctgccg tccgtaccga
      361 ttacacctat ccacgttacg aaaccaccgc tgaaacaaca tcaggcggtt tgacaggttt
      421 aaccacttct ttatctacac ttaatgcccc tgcactctct cgcacccaat cagacggtag
      481 cggaagtaaa agcagtctgg gcttaaatat tggcgggatg ggggattatc gaaatgaaac
      541 cttgacgact aacccgcgcg acactgcctt tctttcccac ttggtacaga ccgtattttt
      601 cctgcgcggc atagacgttg tttctcctgc caatgccgat acagatgtgt ttattaacat
      661 cgacgtattc ggaacgatac gcaacagaac cgaaatgcac ctatacaatg ccgaaacact
      721 gaaagcccaa acaaaactgg aatatttcgc agtagacaga accaataaaa aattgctcat
      781 caaacccaaa accaatgcgt ttgaagctgc ctataaagaa aattacgcat tgtggatggg
      841 gccgtataaa gtaagcaaag gaattaaacc gacggaagga ttaatggtcg atttctccga
      901 tatccgacca tacggcaatc atacgggtaa ctccgcccca tccgtagaga ctgataacag
      961 tcatgagggg tatggataca gcgatgaagt agtgcgacaa catagacaag ggcaaccttg
     1021 attcacacta ccataaccgc ttgctaccaa ggaaaacaaa atgaatttgc ctattcaaaa
     1081 attcatgatg ctgtttgcag cagcaatatc gttgctgcaa atccccatta gtcatgcgaa
     1141 cggtttggat gcccgtttgc gcgatgatat gcaggcaaaa cactacgaac cgggtggcaa
     1201 ataccatctg ttcggcgatg gtcgcggcag tgttaaaaat cgggtttacg ccgtccaaac
     1261 atttgatgca actgcggtcg gccccatact gcctattaca cacgaacgga caggatttga
     1321 aggtgttatc ggctatgaaa cccatttttc aggacatgga catgaagtgc acagtccgtt
     1381 cgataatcat gattcaagaa gcacttctga tttcagcggc ggtgtagacg gtggttttac
     1441 tgtttaccaa cttcatcgga cagggtcgga aatccatccg gaggatggat atgacggacc
     1501 gcaaggcagc gattatcc
//
LOCUS       DAXIFD010000239         1514 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.239, whole genome shotgun sequence.
ACCESSION   DAXIFD010000239 DAXIFD010000000
VERSION     DAXIFD010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.239"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1309
                     /locus_tag="ACFOCN_002004"
     CDS             <1..1309
                     /locus_tag="ACFOCN_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HFC6971084.1"
                     /translation="LALLTATARPIVNLDYLPAALLIALPWRFVKIAGVLAFWLAVLF
                     DGLMMVIQLFPFMNLIGAINLVPFILTAPALYQIMTGLLLLYMLAMPFVLQKAAAKTD
                     FRHLAVCAAVVAAAGYFTGHLSYYDRGRMANIFGANNFYYAKSQAMLYTVSQNADFIT
                     AGLVDPVFLPLGNQQRAATHLNEPKSQKILFIVAESWGMPANPELQNATFAKLLAQKD
                     RFSVWESGSFPFIGATVEGEMRELCAYGGLRGFALRRAPDEKFARCLPNRLKQEGYAT
                     FAMHGAGSSLYDRFSWYPRAGFQEIKTAENLIGKKTCAIFSGVCDSELFGEVSAFFKK
                     HDKGLFYWMTLTSHADYPKSDIFNHRLKCTEYGLPAETDLCRNFSLHTQFFDQLADLI
                     QRPEMKGVEVIIVGDHPPPVGNLNETFRYLKQGHVAWLHFKIK"
BASE COUNT          339 a          469 c          360 g          346 t
ORIGIN      
        1 tttggcactg ctgaccgcca ccgcccgccc gattgtcaat ttggactacc ttcccgccgc
       61 gctgctgatc gccctgcctt ggcgtttcgt taaaattgcc ggcgtattgg cgttttggct
      121 ggcggttttg tttgacgggc tgatgatggt gatccagctt ttccctttta tgaacctcat
      181 cggcgccatc aacctcgtcc ccttcatcct gactgccccc gccctttatc agataatgac
      241 cgggctgttg ctgctgtata tgctggcgat gccgtttgtg ttgcagaaag ccgccgccaa
      301 aaccgacttc cgacaccttg ccgtctgcgc cgccgtcgtg gcggcagccg gctatttcac
      361 cggccatttg agttactacg accgggggcg gatggccaat atcttcggcg caaacaactt
      421 ctattacgcc aaaagtcagg cgatgctcta caccgtcagc cagaatgccg actttattac
      481 cgccggcctg gtcgaccccg tcttcctccc cttgggcaat cagcagcgtg ccgccacgca
      541 tctgaacgag ccgaaatctc aaaaaatcct ctttatcgtc gccgaatctt gggggatgcc
      601 ggccaatccc gaacttcaaa acgccacttt tgccaaactg ctggcgcaaa aagaccgttt
      661 ttcagtttgg gaaagcggca gttttccctt tatcggcgcg acggtcgaag gcgaaatgcg
      721 cgaactgtgc gcctacggcg gtttgcgcgg gtttgcactg cgccgcgcgc ccgacgaaaa
      781 atttgcccgc tgcctcccca accgtttgaa acaagaaggt tacgccacct ttgcgatgca
      841 cggcgcgggc agttcgcttt acgaccgctt cagctggtat ccgagggcgg gctttcaaga
      901 aatcaaaacc gccgaaaacc tgatcggtaa aaaaacctgc gccattttca gcggcgtgtg
      961 cgacagcgag ctgttcggcg aagtgtcggc atttttcaaa aaacacgaca agggactgtt
     1021 ttactggatg acgctgacca gccacgccga ctatcccaaa tccgacattt tcaaccacag
     1081 gctcaaatgc accgaatacg gcctgcccgc cgaaaccgac ctctgccgca atttcagcct
     1141 gcacacccaa tttttcgacc aactggcgga tttaatccaa cgccccgaaa tgaaaggcgt
     1201 ggaagtcatt atcgtcggcg accatccgcc gcccgtcggc aacctcaatg aaaccttccg
     1261 ctacctcaaa caggggcacg tcgcctggct gcacttcaaa atcaaataac aacaatgccg
     1321 tctgaacgca ccaacagcct tcagacggca ttttgcagac aggccgaccc cctcaagccc
     1381 acttttttca tcatttccga taaattgctt tgtatagtgg attaacaaaa accagtacgg
     1441 cgttacctcg ccttagctca aagagaacga ttctctaagg tgctgaagca cctagtgaat
     1501 cggttccgta ctat
//
LOCUS       DAXIFD010000240         1481 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.240, whole genome shotgun sequence.
ACCESSION   DAXIFD010000240 DAXIFD010000000
VERSION     DAXIFD010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.240"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            281..1402
                     /gene="dnaJ"
                     /locus_tag="ACFOCN_002005"
     CDS             281..1402
                     /gene="dnaJ"
                     /locus_tag="ACFOCN_002005"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HFC6971085.1"
                     /translation="MSNQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAE
                     EKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQ
                     MFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTS
                     PETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEVN
                     IPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFAT
                     AALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPV
                     NLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD"
BASE COUNT          376 a          310 c          428 g          367 t
ORIGIN      
        1 gataaaaaat aaaataaggg gaagtctgca gccgcatcaa atgccgtctg aacatgcgtt
       61 cgggcggcgt ttttataaca aaaacacttc atggcggttg gttttatgcc tgtctaagtt
      121 tttgtgtcgt gcatacctga agatttcaga cggcatcggt ttatgctgtc tgaaaagtgt
      181 attccgtttc agtttgtaag ctatggcagt ctgtttgtct tgtgttttgc gcaattgccc
      241 ttattttgag ccgtgatttt attttgaatt agatgaaaaa atgagtaatc aagattttta
      301 tgcgacgctg ggtgtggcaa gaacagctac cgatgatgag attaaaaaag cctaccggaa
      361 attggcaatg aaataccatc ccgaccgcaa tcctgacaat aaagaggcgg aagagaagtt
      421 taaagaagta caaaaggcgt atgaaacttt gtccgacaag gaaaagcgcg ctatgtacga
      481 ccagtatggt catgcggcgt ttgaaggcgg cggacagggg ggcttcggag ggtttggcgg
      541 atttggcggt gcgcagggtt ttgactttgg ggatattttc agccaaatgt ttggaggcgg
      601 ttcggggcgc gcccagcctg attatcaggg tgaggacgtt caagtcggta tcgaaatcac
      661 gcttgaagaa gccgcaaaag gtgtgaagaa acgcatcaat attccgactt atgaagcgtg
      721 tgatgtctgt aacggcagtg gcgcgaaacc ggggacatcc ccggaaacct gcccgacttg
      781 caaaggttcg ggtacggtgc acatccagca ggcgattttc cgtatgcagc agacttgtcc
      841 gacctgccac ggtgcgggca aacacattaa agaaccttgc gtcaaatgcc gtggcgcggg
      901 gcggaataag gcggtcaaga cggtggaagt caatattccc gccggtatcg atgacgggca
      961 gcgtatccgt ttgagcggcg aaggcgggcc gggtatgcac ggtgcgcctg ccggcgactt
     1021 gtatgtaacc gtccgcattc gggcgcataa gattttccaa cgcgacggtc tggacttgca
     1081 ttgcgaactg ccgatcagtt ttgccacggc tgctttgggc ggggagttgg aagtgccgac
     1141 cttggacgga aaggtcaagc tcaccgtccc caaagaaacc caaaccggca ggaggatgcg
     1201 cgtgaagggt aagggtgtca aatctttacg cagcagcgcg accggcgatt tgtactgcca
     1261 tattgttgtc gaaacgcctg tcaatttgac cgaccgtcaa aaagagcttt tggaagaatt
     1321 tgagcggatt tctaccggct tggaaaacca aacaccgcgc aagaaatcgt ttttagacaa
     1381 gctgcgcgat ttgtttgatt gattttaagg ttcggaaaca agcagccgta tcggggaatc
     1441 tccctgatac ggctgttttt gtttgtttaa aaatagtttt t
//
LOCUS       DAXIFD010000241         1465 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.241, whole genome shotgun sequence.
ACCESSION   DAXIFD010000241 DAXIFD010000000
VERSION     DAXIFD010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.241"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..1245
                     /locus_tag="ACFOCN_002006"
     CDS             <1..1245
                     /locus_tag="ACFOCN_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 1"
                     /protein_id="HFC6971086.1"
                     /translation="IEQHTDISDIIVCNVYSWELIRASVIESLMEFTGKWEKHFQTSP
                     KIDYRFDHEGKRSMDDVFSEETFIMEFPRKNGIDKKTAAFQNIPNSIVMEYPQTNGYS
                     MRSHSLKSNVVAAKHFLEKLNKIKVDIKFKKHDLANIKKMNRIIYEHLGININIEAFL
                     KPRLEKFKREEKYFHDFFKRNNFKEVIFPSTYWNPGIICAAHKQGIKVSDIQYAAITP
                     YHPAYFKSPKSHYVADKLFLWSEYWNHELLPNPTREIGSGAAYWYALDDVRFSEKLNY
                     DYIFLSQSRISSRLLSFAIEFALKNPQLQLLFSKHPDENIDLKNRIIPDNLIISTESS
                     IQGINESRVAVGVYSTSLFEALACGKQTFVVKYPGYEIMSNEIDSGLFFAVETPEEML
                     EKTSPNWVAVADIENQFFGQEK"
BASE COUNT          512 a          225 c          244 g          484 t
ORIGIN      
        1 attgagcaac atacagatat atcggatatt atcgtttgca atgtttattc ttgggaactt
       61 attcgtgcct cagttattga gagccttatg gaatttaccg gaaaatggga aaaacacttt
      121 cagacttctc ctaaaattga ttatcgattt gatcatgaag gtaagcgttc gatggatgat
      181 gtcttttcag aagaaacatt tattatggaa tttccgcgta aaaatggtat agataagaaa
      241 acagcagcct tccaaaatat accaaacagt attgtaatgg agtatccgca gaccaatggt
      301 tacagtatgc gcagtcattc actgaaaagt aatgtagttg cggcaaaaca ttttcttgaa
      361 aaattaaata aaattaaggt agatattaaa tttaaaaagc atgaccttgc aaacatcaaa
      421 aaaatgaatc gaattattta tgagcattta ggcattaaca taaatatcga agcatttcta
      481 aaaccacgat tagaaaaatt taagcgtgaa gaaaaatatt ttcatgattt cttcaaaaga
      541 aataatttta aagaggtaat ttttccaagc acttattgga atccaggtat tatttgtgct
      601 gcacataaac aaggtattaa ggtatctgat attcaatatg ctgccattac tccttatcat
      661 cctgcgtatt ttaaatcacc aaaatcacat tacgttgctg ataaattgtt cttatggtct
      721 gaatattgga atcatgagct tttaccaaat ccaacacgag agattggttc tggtgccgca
      781 tattggtatg cattagatga tgtgagattt tcagaaaaac tgaattatga ctatatcttt
      841 ctatctcaaa gtaggatttc ttcgcgcttg cttagttttg caattgagtt tgcattaaaa
      901 aatcctcaac tacagctttt attttctaag catccagatg aaaatataga tttaaagaac
      961 agaattattc ctgataatct tataatctcc acggaatctt ctatacaagg catcaatgaa
     1021 tctcgcgttg ctgtaggtgt ttattcaact agcttatttg aggcattagc atgcggcaaa
     1081 caaacttttg ttgttaaata tccgggatat gaaattatgt caaatgaaat agattcaggg
     1141 ttattctttg cagtagaaac acctgaagaa atgcttgaga aaacaagccc gaattgggtg
     1201 gctgtggcag atattgaaaa ccagtttttt ggccaagaaa aataattttt aagttaatct
     1261 ttaaaagtgc aatatttttc ttattttaaa tattgcactt tattctttta atcataggaa
     1321 ctcacatgta ttctgaacag ggaattaata atactattaa catatctact acatctttaa
     1381 ccaatgccac gcaactaact gtgatcggga ataataactc tgtatatata ggtaataatt
     1441 gtaaaatcgt cagctccaat attag
//
LOCUS       DAXIFD010000242         1441 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.242, whole genome shotgun sequence.
ACCESSION   DAXIFD010000242 DAXIFD010000000
VERSION     DAXIFD010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.242"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            27..1364
                     /locus_tag="ACFOCN_002007"
     CDS             27..1364
                     /locus_tag="ACFOCN_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6971087.1"
                     /translation="MSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFL
                     LFLIFTILVALPVQLAEFYIGRTGGKNAVDSFRALRPGTQWLWVGRMGVAACFILLSF
                     YSVVGGWVLNYVVHSFTGAIHAGADFEALFGTTISNPAGSLSYQALFMLITVWVVKGG
                     ISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTMITALG
                     QAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFE
                     PSQGPGLIFIVLPAVFMKMPFGTVLFAVFMLLVVFATLTSAFSMLETVIAATIRQDER
                     KRKKHTWLIGTAIFIVGIPSALSFGVWGEFKVFGKTIFDLWDYVISAVIMPVGALGVA
                     VFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFVNSLDIL"
BASE COUNT          262 a          344 c          392 g          443 t
ORIGIN      
        1 tatcttcaca tttcttaata aattttatga gtaaccatac ttcttggtcg tccaaaatcg
       61 gtttcgtgct tgctgcggcg ggttcggcca tcggtttggg cgcgatttgg aaattccctt
      121 atacggcggg caccaacggc ggcgcggtgt ttttcctgct gtttttgata tttactatct
      181 tggtcgccct gcccgttcag cttgccgaat tttatatcgg gcgcacgggc ggtaaaaatg
      241 ccgtcgattc cttcagggct ctgcgtccgg gtacgcaatg gctttgggtc gggcgcatgg
      301 gcgttgccgc ctgctttatt ttgctgtcgt tttacagcgt ggtcggcgga tgggtattga
      361 attatgtcgt ccacagtttt acaggggcaa tccatgcggg agcggacttt gaagccctgt
      421 tcggcacaac gatttccaat ccggcaggtt cgctgtccta tcaggcactg tttatgctga
      481 ttacggtttg ggtggtcaaa ggcgggattt cagacggcat cgaaaaggca aaccgttatc
      541 tgatgccggg gctgtttatc ctctttattg cgctggcaat ccgttcgctg acgctgccgg
      601 gtgcaatgga gggcgtgtct ttcctgctca aaccgaattg gtcgtacttt aaagccgata
      661 cgatgattac ggctttaggc caggcgtttt ttgccctgag catcggcgtt tccgccatga
      721 ttacctacgc ttcatatttg ggaaaagatc aggatatgtt ccgctcgggg catacgatta
      781 tgtggatgaa cctcttggtt tcgctgttgg caggtttggt gatttttccg gcggtgttcg
      841 ccttcggttt tgaaccgagc caggggccgg gattgatttt tatcgtattg ccggcggtgt
      901 ttatgaaaat gccgttcggt acggttttgt ttgcggtatt tatgctgctg gtcgttttcg
      961 ccacgctgac ttcggcattt tcgatgttgg aaacggtcat cgccgcaacc atccgccaag
     1021 acgagcgcaa acgcaaaaaa cacacttggc ttatcggcac ggccattttc attgtcggca
     1081 tcccatccgc gctgtctttc ggcgtatggg gtgagtttaa ggttttcggc aaaaccattt
     1141 ttgatttgtg ggactatgtt atttccgccg tcattatgcc tgtcggcgcg ttgggcgttg
     1201 ccgtatttac cgcctggatt caggacaagc agtctgtgtt aaaagatgcc ggcgcgggca
     1261 gcaccgtacc acgggcagtg ctgctgctgt ggctgaatac cttgcgctac cttgccccga
     1321 ttgccattat tattgttttc gtcaattctt tggacatcct ttaaaagcca tccaaacagc
     1381 aaaaatgccg tctgaaagcc tttcagacgg catttttgct tcaggttcag cctatttcgt
     1441 t
//
LOCUS       DAXIFD010000243         1430 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.243, whole genome shotgun sequence.
ACCESSION   DAXIFD010000243 DAXIFD010000000
VERSION     DAXIFD010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1430
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.243"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(6..971)
                     /locus_tag="ACFOCN_002008"
     CDS             complement(6..971)
                     /locus_tag="ACFOCN_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS30-like element IS1655 family transposase"
                     /protein_id="HFC6971088.1"
                     /translation="MSYTQLTQGERYHIQYLSRHCTVTEIAKQLNRHKSTISREIRRH
                     RTQGQQYSAEKAQRQSRTIKQRKRQPYKLDSQLIQHIDTLIRRKLSPEQVCAYLCKHH
                     QITLHHSTIYRYLRQDKSNGSTLWQHLRICSKPYRKRYGSTWTRGKVPNRVGIENRPA
                     IVDQKSRIGDWEADTIVGKGQKSALLTLVERVTRYTIICKLDSLKAEDTARAAVRALK
                     AHKDRVHTITMDNGKEFYQHTKITKALKAETYFCRPYHSWEKGLNENTNGLIRQYFPK
                     QTDFRNISDREIRRVQDELNHRPRKTLGYETPSVLFLNLFQPLIH"
     gene            complement(1061..1413)
                     /locus_tag="ACFOCN_002009"
                     /pseudo
     CDS             complement(1061..1413)
                     /locus_tag="ACFOCN_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713843.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="contact-dependent growth inhibition system
                     immunity protein"
BASE COUNT          282 a          307 c          390 g          451 t
ORIGIN      
        1 caacactagt gtattagtgg ttggaacaga ttcaagaata aaacacttgg cgtttcgtag
       61 ccaagtgttt ttcttggtcg gtggttcaac tcatcttgaa ccctgcgtat ctcccgatca
      121 ctgatgttac ggaaatcggt ttgtttgggg aagtattgcc ggatgagtcc gttggtgttc
      181 tcattcagcc ctttctccca agaatggtaa gggcgacaaa aataagtctc cgctttcaat
      241 gctttggtta ttttggtgtg ttggtagaac tctttgccgt tatccatggt aatggtgtgc
      301 accctgtctt tatgtgcctt taatgcccta acagctgccc gggcagtgtc ttcggctttg
      361 aggctatcca atttgcagat gatggtgtag cgggtaacgc gttcgaccaa ggtcaataat
      421 gcgcttttct gtcctttgcc gacaatggtg tcggcttccc aatcgccgat acgggatttc
      481 tggtcgacga tagcgggtcg gttttctatg ccgacacggt tggggacttt gcctctggtc
      541 catgtgctgc cgtagcgttt gcggtagggt ttgctgcata ttctgagatg ttgccacaac
      601 gtgctgccgt tgcttttgtc ttggcgaagg tagcggtaaa tggtgctgtg gtggagcgtg
      661 atctggtggt gtttgcacag gtaggcgcat acttgttcgg gactgagttt gcggcggata
      721 agggtgtcga tgtgctgaat cagctgcgaa tcgagcttat agggttgtcg cttacgctgt
      781 ttgatagtcc ggctttgccg ctgggctttt tcggcgctgt attgctgccc ttgggtgcgg
      841 tgccgtctga tttcgcggct gatggtgctt ttgtggcggt tcagctgttt ggcgatttcg
      901 gtgacggtgc agtggcggga caggtattgg atgtggtatc gttcgccttg ggtcagttgc
      961 gtgtagctca tggcaatctt tcttgcagga aaggccgtat gctaccgcat actggccttt
     1021 ttctgttagg gaaagttgca cttcaaatgc gaatccgcca gccgttgtgc agccaaatat
     1081 ccccgctcat catgttttta aatagggcgc gtctggtttt atagcccaag ttcccgcata
     1141 gtttggcaac ccaatcctca tagcgttgcc gaaatttttc ggtatcaaaa aaatcttggt
     1201 cttccgaact gtcataaacg aaagtcctgc tgtttgccaa cgcttgcaag accgtcgtgc
     1261 ctaaagtttc attgtcggta tccaatggca ggatatgggg ggatataggt ggtctattgc
     1321 cgttaacccc aaacctgaac atgtttgaac aatcagagct tcttcattag cataaaaaac
     1381 tgcccaataa ttttgatcct gtttaaaaat tattatttga tctccgtaat
//
LOCUS       DAXIFD010000244         1417 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.244, whole genome shotgun sequence.
ACCESSION   DAXIFD010000244 DAXIFD010000000
VERSION     DAXIFD010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1417
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.244"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(151..780)
                     /locus_tag="ACFOCN_002010"
     CDS             complement(151..780)
                     /locus_tag="ACFOCN_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CadD family cadmium resistance transporter"
                     /protein_id="HFC6971089.1"
                     /translation="MIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQF
                     LGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPIFLGIKVLLLGDSDGEAIAKEGLRK
                     DNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKL
                     AQVPSVGETLEKYSRWFVAVVYLGLGVYILIENNSFDMLWTVSGQEKIL"
     gene            complement(1095..1310)
                     /gene="rpmE"
                     /locus_tag="ACFOCN_002011"
     CDS             complement(1095..1310)
                     /gene="rpmE"
                     /locus_tag="ACFOCN_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HFC6971090.1"
                     /translation="MKQGIHPNYHEVNVTCSCGNKFATKSAMEKENFNIEVCSLCHPF
                     YTGTQKIVDTTGRVDKFNNKFGNLFKR"
BASE COUNT          464 a          282 c          273 g          398 t
ORIGIN      
        1 tgagaagaaa tggacggatt gccaagtgta gcaaatattc gcacaaaggt cgtgcagaga
       61 cggcatcaga taaaatcaga cagcatcaga cacaaaaaga ccggcaacaa aaaagactgc
      121 acatggcagt ctttgcagat actatctttt tcataatatt ttttcctggc ccgacacagt
      181 ccatagcata tcaaaactgt tgttttcaat caggatatat acccccaatc ccaaataaac
      241 aacagcaaca aaccatctgc tatatttttc caaagtttct ccaacagaag ggacttgtgc
      301 taatttttgg gcagaaaaaa ccaagagata aatcatgact agaaaggtaa gtaaagccac
      361 tatcaaattc gctaaattta aggtagtaaa atatgggaca aagacaccaa tattgtcagc
      421 accacaactt gcaaaagtaa tcatagcgac tagaaaaatc aggtttttat tatctttgcg
      481 caaaccctct ttggcaatag cctctccatc agaatctcct aacagcaaaa ctttgatgcc
      541 taggaaaatc ggaatcaagc cgagcaaacc taaaatctct ttactaggaa tataatctaa
      601 gacaaatgca aaaagcaaac ttagcaatat caggctaaca gagcctagaa attgtcctaa
      661 atagatgtta atgatgtctt ttctgctttt tcttttggca aaaaataaca ttaggataat
      721 aagtaagtct acggctgtcc cagaatacag gattattgaa gtaacgacat tttgaatcat
      781 aaaacatctc attcaaatat atttttaaat gtattcaaac attaaacctt gtagatgtca
      841 acttcaaccc cgtcaaaata tagtggatta acaaaaacca gtacggcgtt gcctcgcctt
      901 cgctcaaaga gaacgattct ttagggtgct gaagcaccaa gtgaatcggt tccgtactat
      961 ttgtactgtc tgcggcttcg tcgccttgtc ctgatttttg ttaatccact atatagataa
     1021 gaagtcagtg tgccaaatat taaaaagccc tgccatcgaa atgatggcag ggcttaattc
     1081 ttgcaaagcg gcaatcagcg tttgaacagg ttgccgaatt tgttgttgaa tttgtccacg
     1141 cggccggtgg tatcaacgat tttttgggtg ccggtataga acgggtggca cagggagcaa
     1201 acctcgatat tgaagttttc tttttccatc gcggatttgg ttgcgaattt gttgccgcaa
     1261 gagcaggtaa cgttgacttc gtggtagttc gggtgaatac cttgtttcat ttgatttcct
     1321 ttcaaaaaag cgggcatagg ggatgtacct atgctacaga caagtccgac attctcgcta
     1381 ttttctgttg tttcgtcaag aggatattcg ataaaat
//
LOCUS       DAXIFD010000245         1378 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.245, whole genome shotgun sequence.
ACCESSION   DAXIFD010000245 DAXIFD010000000
VERSION     DAXIFD010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.245"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            28..>1378
                     /locus_tag="ACFOCN_002012"
     CDS             28..>1378
                     /locus_tag="ACFOCN_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC45 family MFS transporter"
                     /protein_id="HFC6971091.1"
                     /translation="MSEYTPQTAKQGLPALAKSTIWMLSFGFLGVQTAFTLQSSQMSR
                     IFQTLGADPHNLGWFFILPPLAGMLVQPIVGHYSDRTWKPRLGGRRLPYLFYGTLIAV
                     IVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKSY
                     AYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQTVVVAFYVGAALLIITSAF
                     TIFKVKEYDPETYARYHGIDVAANQEKANWFELLKTAPKAFWTVTLVQFFCWFAFQYM
                     WTYSAGAIAENVWHTTDASSVGYQEAGNWYGVLAAVQSVAAVICSFVLAKVPNKYHKA
                     GYFGCLALGALGFFSVFFIGNQYALVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGT
                     YLGLFNGSICMPQIVASLLSFVLFPMMGGLQATMFLVGGVVLLLGAFSVFLIKETHGG
                     "
BASE COUNT          268 a          336 c          395 g          379 t
ORIGIN      
        1 ttttcaaatc aaaaaaggat ttaccttatg tcggaatata cgcctcaaac agcaaaacaa
       61 ggtttgcccg cgctggcaaa aagcacgatt tggatgctca gtttcggctt tctcggcgtt
      121 cagacggcct ttaccctgca aagctcgcaa atgagccgca tttttcaaac gctaggcgca
      181 gacccgcaca atttgggctg gtttttcatc ctgccgccgc tggcggggat gctggtgcag
      241 ccgattgtcg gccattactc cgaccgcact tggaagccgc gtttaggcgg ccgccgtctg
      301 ccgtatctgt tttatggcac gctgattgcg gttattgtga tgattttgat gccgaactcg
      361 ggcagcttcg gtttcggcta tgcgtcgctg gcggctttgt cgttcggcgc gctgatgatt
      421 gcgctgttgg acgtgtcgtc gaatatggcg atgcagccgt ttaagatgat ggtcggcgat
      481 atggtcaacg aggagcagaa aagctacgcc tacgggattc aaagtttctt agcgaatacg
      541 ggcgcggtcg tggcggcgat tctgccgttt gtgttcgcgt atatcggttt ggcgaacacc
      601 gccgagaaag gcgttgtgcc acaaaccgtg gtcgtagcat tctatgtggg cgcggcatta
      661 ctgattatta ccagtgcgtt cacaatcttc aaagtcaaag aatacgaccc ggaaacctat
      721 gcccgttacc acggcatcga tgtcgccgcg aatcaggaaa aagccaactg gttcgaactt
      781 ttaaaaacgg cacctaaagc gttttggacg gttactctgg tacagttttt ctgctggttc
      841 gccttccaat atatgtggac ttactcggca ggcgcgattg cggaaaacgt ctggcacacc
      901 actgatgcgt cttccgtagg ttatcaggag gcgggcaact ggtacggcgt tttggcggcg
      961 gtgcagtcgg ttgcggcggt gatttgttcg tttgtattgg cgaaagtgcc gaataaatac
     1021 cataaggcgg gttatttcgg ctgtttggct ttgggcgcgc tcggcttttt ctccgttttc
     1081 ttcatcggca accaatacgc gctggtgttg tcttatacct taatcggcat cgcttgggcg
     1141 ggcattatca cttatccgct gacgattgtg accaacgcct tgtcgggcaa gcatatgggc
     1201 acttacttgg gcctgtttaa cggctctatc tgtatgccgc aaatcgtcgc ttcgctgttg
     1261 agtttcgtgc ttttcccgat gatgggcggc ttgcaggcca ctatgttctt ggtagggggc
     1321 gtcgtcctgc tgctgggcgc gttttccgtg ttcctgatta aagaaacaca cggcgggg
//
LOCUS       DAXIFD010000246         1354 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.246, whole genome shotgun sequence.
ACCESSION   DAXIFD010000246 DAXIFD010000000
VERSION     DAXIFD010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.246"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..435
                     /locus_tag="ACFOCN_002013"
     CDS             <1..435
                     /locus_tag="ACFOCN_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6971092.1"
                     /translation="IIENRADYYRLLLGVTERQDWESWIIYILDGVADTADWTVAKID
                     AIRRLFEQTRQHIRTHAQGIYTHELVNLLFEQPYTRIANLEAAGIAKRQTASKYLKEL
                     SDIGVLQEIAIGRDKLFIHPRLMELLRGEGNSFTSFQSLVKA"
     gene            465..1343
                     /locus_tag="ACFOCN_002014"
     CDS             465..1343
                     /locus_tag="ACFOCN_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6971093.1"
                     /translation="MARRSKTFEEAAAEVEERFGHRGIKLVEFEGTAKPCVINCPKHG
                     NQTCSRYSNMFIGSSWGCPSCGNEQAAKAGIATLRKNHIALEMLKQAVTGMTKQERIT
                     TQAYNEMTKSVAGSNSIVLNDVQGDTTINNHHTHTHNHSDADGKALSMRLTPRPLLSD
                     RQAAAFARTGKLTGSFDLFASVVAPSQYTFAVAMPDTSMSPVIEKGDLLVVEPRMRPA
                     DEDIVLIELSDKRLVVAHLVIDIAGRMLIYQTGRPSEALDLPEGSVILGVVLEVKKRF
                     MSAAQARRRVDSDYRP"
BASE COUNT          366 a          345 c          362 g          281 t
ORIGIN      
        1 attatcgaaa acagggcgga ctattaccgc ctgcttttag gcgtaaccga acggcaggac
       61 tgggaaagct ggataatcta catcttagac ggcgtagccg acaccgccga ttggacggta
      121 gcgaaaatag atgcgatacg ccgcctgttt gagcagacac gtcaacacat acggacacac
      181 gcacaaggaa tctacacgca cgaactggta aatcttctgt ttgagcagcc atatacacgc
      241 attgccaacc tagaagcggc agggatagcc aaacggcaga cggcctctaa gtacctgaaa
      301 gagctttcag acataggtgt gctgcaagaa atcgccatcg gcagggacaa actattcatt
      361 catccgcgcc taatggaact attgcgggga gagggcaaca gctttacctc attccaatcc
      421 ctcgttaaag catagccaaa ataatcaata atccggaggt caatatggca agaaggtcaa
      481 aaacatttga agaagctgct gctgaggttg aggaacgttt cggtcatcgt ggcattaagt
      541 tggtcgagtt tgagggtaca gccaagccgt gtgtaatcaa ctgccctaaa catggaaacc
      601 aaacctgttc gaggtactcc aatatgttca taggaagtag ctggggttgc ccctcttgtg
      661 gtaatgagca agctgcaaaa gccggtatag cgacccttag gaagaatcac atagcgttag
      721 aaatgctgaa acaggctgta acaggtatga ccaagcaaga gcgcatcacg acgcaagcct
      781 acaatgagat gaccaaatcc gtggcaggtt caaacagcat agtccttaac gatgtccaag
      841 gcgatacgac catcaacaac catcatacgc atacgcacaa ccacagcgat gccgacggca
      901 aagcactgtc gatgaggctc acaccacgcc ccctgttgtc agaccgtcag gcggcggctt
      961 tcgcccgtac aggcaaactc acaggcagtt tcgacttgtt tgcttcggtg gtcgccccct
     1021 cgcagtacac gtttgccgtt gccatgcccg acacgtccat gtcgccggtt atcgaaaagg
     1081 gggatttgct ggtggtcgag ccgcgtatgc gccctgcgga cgaagacatc gtactgattg
     1141 aactgtccga caagcggctg gtcgtcgcgc accttgttat cgatattgcg ggcaggatgc
     1201 tgatttatca gacgggcagg ccgtctgaag ccctcgacct gcccgaaggc agcgtgattt
     1261 taggtgtggt gctggaggtc aaaaaacggt ttatgtccgc cgcacaggca agaaggcgtg
     1321 ttgattcgga ttaccgcccc tgatgtgtgg acgg
//
LOCUS       DAXIFD010000247         1351 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.247, whole genome shotgun sequence.
ACCESSION   DAXIFD010000247 DAXIFD010000000
VERSION     DAXIFD010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.247"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>1351
                     /locus_tag="ACFOCN_002015"
     CDS             <1..>1351
                     /locus_tag="ACFOCN_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6971094.1"
                     /translation="AELFGDNTKLADGSFAKHGYAALAELDSNGDNIINAADAAFQTL
                     RVWQDLNQDGISQANELRTLEELGIQSLDLAYKDVNKNLGNGNTLAQQGSYTKTNGTT
                     AKMGDLLLAADNLHSRFKDKVELTAEQAKAANLAGIGRLRDLREAAALSGDLANMLKA
                     YSAAETKEAQLALLDNLIHKWAETDSNWGKKSPMRLSTDWTQTANEGIALTPSQVAQL
                     KKNALVSLSDKAKAAIDAARDRIAVLDAYTGQDSNTLYYMSEEDALNIVKVTNDTYDH
                     LAKNIYQNLLFQTRLQPYLNQISFKMENDTFTLDFSGLVQAFNHVKETNPQKAFVDLA
                     EMLAYGELRSWYEGRRLMADYVEEAKKAGKFEDYQKVLGQETVALLAKTSGTQADDIL
                     QNVGFGHNKNVSLYGNDGNDTLIGGAGNDYLEGGSGSDTYVFGKGFGQDTVYNYDYAT
                     "
BASE COUNT          406 a          307 c          313 g          325 t
ORIGIN      
        1 gtgcggaact cttcggcgac aacaccaaac tggcagacgg ctcttttgcc aaacacggct
       61 acgcggcttt ggccgaattg gattcaaacg gcgacaacat catcaacgcg gcagacgccg
      121 cattccaaac cctgcgtgta tggcaggatc tcaaccagga cggcatttcc caagctaatg
      181 aattgcgtac ccttgaagaa ttgggtattc aatctttgga tctcgcctat aaagatgtaa
      241 ataaaaatct cggtaacggt aacactttgg ctcagcaagg tagctatacc aaaacaaacg
      301 gtacaaccgc aaaaatgggg gatttacttt tagcagccga caacctgcac agccgtttta
      361 aagataaagt ggaactcact gccgaacagg caaaagccgc caatcttgcg ggcattggtc
      421 gtctgcgcga tttgcgcgaa gctgccgcat tgtccggcga tttggccaat atgctgaaag
      481 cttattctgc cgccgaaact aaagaagcac agttggcatt gttagataat ttgattcaca
      541 aatgggcgga aaccgattcg aactggggca aaaaatcgcc aatgcgactt tcaaccgatt
      601 ggacgcaaac ggctaatgaa ggtattgcac tgacaccatc ccaagtagca caactaaaaa
      661 agaacgcttt agtttccctt tctgataaag ctaaagcagc tattgacgcc gcccgcgacc
      721 gcattgccgt gcttgatgcc tacacggggc aggattccaa cacactctat tacatgagcg
      781 aggaagatgc gcttaatatc gtcaaagtaa ccaacgatac atacgaccat ctcgccaaaa
      841 acatctacca aaacctgttg ttccaaaccc gtttgcagcc atatttgaat caaatcagtt
      901 tcaaaatgga aaatgatacg ttcactttgg attttagtgg tcttgttcaa gcatttaacc
      961 atgtcaaaga aactaatccg caaaaagctt ttgtggattt ggccgagatg cttgcatatg
     1021 gcgaacttcg ttcttggtat gaaggccgaa gactaatggc cgattatgtg gaggaggcaa
     1081 aaaaagcagg taaatttgaa gattaccaga aagtgttggg tcaggagacc gttgcattat
     1141 tagctaaaac atcgggtacg caagcagatg atatcctgca aaatgtaggc tttggtcata
     1201 ataaaaatgt ttctttatat ggtaatgacg gcaacgacac tctaatcggc ggtgccggta
     1261 atgattactt ggagggcggc agcggttcgg atacttatgt cttcggcaaa ggcttcggtc
     1321 aggatacggt ctataattac gactacgcta c
//
LOCUS       DAXIFD010000248         1290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.248, whole genome shotgun sequence.
ACCESSION   DAXIFD010000248 DAXIFD010000000
VERSION     DAXIFD010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.248"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            166..1278
                     /gene="nadA"
                     /locus_tag="ACFOCN_002016"
     CDS             166..1278
                     /gene="nadA"
                     /locus_tag="ACFOCN_002016"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HFC6971095.1"
                     /translation="MQTAARRSFDYDMPLIQTPTSACQIRQAWAKVADTPDRETAGRL
                     KDEIKALLKEKNAVLVAHYYVDPLIQDLALETGGCVGDSLEMARFGAEHEADTLVVAG
                     VRFMGESAKILCPEKTVLMPDLEAECSLDLGCPEEAFSAFCDQHPDRTVVVYANTSAA
                     VKARADWVVTSSVALEIVSYLKSRGEKLIWGPDRHLGDYICRETGADMLLWQGSCIVH
                     NEFKGQELAALKAEHPDAVVLVHPESPQSVIELGDVVGSTSKLLKAAVSRPEKKFIVA
                     TDLGILHEMQKQAPDKEFIAAPTAGNGGSCKSCAFCPWMAMNSLGGIKYALTSGRNEI
                     LLDRKLGEAAKLPLQRMLDFAAGLKRGDVFNGMGPA"
BASE COUNT          299 a          333 c          387 g          271 t
ORIGIN      
        1 accaaagcgg tttgtcggaa cgaagcgggt cggttttacg gtatcgcaaa cctgttttca
       61 gacgaccttg cttattatac tcaatttgag cataatataa aaatatttca aaatataaac
      121 ggcaaatctt tatgccgtct gaaaaaccag ccataaggaa gtctcatgca aaccgccgcc
      181 cgccgctcgt tcgattacga tatgcccctc attcaaacgc cgacttccgc ctgccaaatc
      241 cgtcaggcgt gggcgaaggt tgccgacacg cccgaccgcg aaacggcagg ccgtctgaaa
      301 gacgaaatca aggctttgct gaaggagaaa aacgcggtct tggtggcgca ttattatgtt
      361 gatccgctga ttcaggattt ggctttggaa acgggcggat gcgtgggcga ttcgctggaa
      421 atggcgcgct ttggtgcgga acacgaagcc gatacattag tggtggcggg cgtgcgtttc
      481 atgggcgaga gcgcgaaaat cctctgccct gaaaaaacag tgctgatgcc tgatttggag
      541 gcggaatgtt ctttggattt gggttgcccg gaagaggcgt tttcggcgtt ttgcgaccaa
      601 caccccgacc gcacggtggt ggtgtacgcc aacacttccg ccgccgtgaa agcgcgtgcc
      661 gactgggtgg taacgtcttc agtggcgttg gaaatcgtgt cgtatctgaa atcgcgcggc
      721 gagaagctga tttggggacc cgaccgccac ctcggcgact acatctgccg cgaaacgggc
      781 gcggatatgc tgttgtggca gggttcgtgc atcgtccaca acgaatttaa agggcaggag
      841 ctggcggcgt tgaaagcgga acatcccgac gcggtggtgc tggttcatcc tgaatcgccg
      901 caaagcgtca tcgaactggg cgacgtggtc ggctcgacca gcaaactgct caaggccgcc
      961 gtatcgcgtc ctgaaaaaaa attcatcgtg gcgaccgatt tgggcatcct gcacgaaatg
     1021 caaaagcagg cgcccgacaa agaatttatc gccgcgccga cggcgggcaa cggtggaagc
     1081 tgtaaaagct gcgcgttctg cccgtggatg gcgatgaatt cgctgggcgg catcaaatac
     1141 gccctgacaa gcggacgtaa cgaaatcctg ttggacagga agctgggcga agccgccaaa
     1201 ctgcctttgc agcgtatgct cgacttcgcg gcaggactca aacgcgggga tgtgttcaac
     1261 ggcatgggtc ccgcctgatt tgccgtccat
//
LOCUS       DAXIFD010000249         1272 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.249, whole genome shotgun sequence.
ACCESSION   DAXIFD010000249 DAXIFD010000000
VERSION     DAXIFD010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.249"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..890
                     /locus_tag="ACFOCN_002017"
     CDS             <1..890
                     /locus_tag="ACFOCN_002017"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6971096.1"
                     /translation="TAQKEAAPAQQQGGIRFSDGIAAVADNEVITRRRLAEAVSEAKA
                     NLPKDAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEIDAVVAKNPALKNLSP
                     AQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQH
                     ILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVM
                     VPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAE
                     QATVNLLRDLHSGAYVDIR"
BASE COUNT          350 a          373 c          325 g          224 t
ORIGIN      
        1 ccacggcgca aaaagaagcc gcacccgcac aacagcaggg cggtatccgc ttttcagacg
       61 gcattgccgc cgttgccgac aacgaagtca tcacgcgccg ccggcttgcc gaagccgttt
      121 ccgaagccaa agccaacctg cccaaagacg cgcagataag cgaatccgag ctgtcccgac
      181 aggtgctgat gcagcttgtc aaccaatccc tgattgtaca ggcgggcaaa cgccgcaaca
      241 ttcaagcaag cgaagcggaa atcgatgccg tcgtcgcaaa aaatcccgcc ctcaaaaacc
      301 tcagccccgc ccaacgccgc gattttgccg acaacatcat tgccgaaaaa gtccgccagc
      361 aggcagtgat gcagaacagc cgcgtgagcg aagctgaaat cgatgccttc ctcgagcagg
      421 cgcaaaaaca aggcatcacc ctgcccgaag gcgcaccgtt gcgccaatac cgcgcccaac
      481 acatcctgat taaagctgac agcgaaaacg ccgccgtcgg cgcggaaagc accatccgca
      541 aaatctacgg agaggcccgc agcggcacag acttttccag cctggcgcgc caatattcgc
      601 aagacgcgag cgcgggcaac ggcggagatt tgggctggtt tgccgacggc gtgatggttc
      661 ccgcctttga agaagccgtc cacgcgctca aacccggaca ggtcggcgcg cccgtccgca
      721 cccaattcgg ctggcatatc atcaaattga acgaagtgcg cgatgccggc acacctcagg
      781 aacgtatccg caattccgtg cggcaataca tcttccaaca aaaagccgaa caggcaaccg
      841 tcaacctgtt gcgtgacctg cattccggcg cgtatgtcga catccgctaa ggcggtttga
      901 agcaaaaagc cataccgatc ggcaaaaatc cgggcggtat ggctttttgg atttcgagtt
      961 acttttacac cgtcattcat cattcccgcg aaagcgggaa tctagaaacg aaaagtaaca
     1021 ggaatttatc gggaatggct ggaatttaaa ggtctggatt cccgctttcg cgggaatgac
     1081 gggattttgg gttgtggtaa tttatcggaa aaacaaaaaa acctatgccg tcattcccga
     1141 gcaggcggga atccggttat ttaaaactgc agaaatttat ccgaagcaac aacaatcttt
     1201 ccatcgtcat tcccgcgtag gcgggaatct agcaacgaaa agtaacagga atttatcggg
     1261 aaaacagaaa cc
//
LOCUS       DAXIFD010000250         1254 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.250, whole genome shotgun sequence.
ACCESSION   DAXIFD010000250 DAXIFD010000000
VERSION     DAXIFD010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.250"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            237..1190
                     /locus_tag="ACFOCN_002018"
     CDS             237..1190
                     /locus_tag="ACFOCN_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6971097.1"
                     /translation="MGFLIGLSRNLTRFTALVILLASAVAFIGPASFAWVKGDVQVLV
                     LGIIMLGMGMTLGREDYRILAQRPLDVFIGAAAQYTVMPLLAIGIAKLFDLSPGLTLG
                     LVLVGTCPGGVSSNIMSFLAKGDVAFSVGMTTVSTVLAPAVTPLWMTCLVGQTVDMDG
                     WGMFRFMLLVTLLPVVLGSAANILLHGKHWFENVRAVMPGVAVLAFACIVGGVASVHG
                     HRFAESALVMVLAIAVHNIAGYVSGYYAAALFGMDTAKKRTLAIEVGVQNAGLATGLS
                     AKFFPGNPESAVAAAVACVWHSVSGTVLGNLFALWDKRRDA"
BASE COUNT          200 a          273 c          432 g          349 t
ORIGIN      
        1 caaaccggat gattcgggct aaataattcc tgattctttg gatatagcca acggtatgcc
       61 tgccgatgcc gtcagaaagg gcttgatggg cgtttgcggt tcgggttaat atttgtgctg
      121 tatctgttaa ttccggttag taaaatgggg cggggacgat gagtggccgt cggtcggttt
      181 tgcacgggcg gtaataatgt ccggcgcaag gtgcgccgtt tcgggagggg tgtgtgatgg
      241 gttttctgat tggtttgagc cgcaacctga cgcggtttac ggctttggtc attttgcttg
      301 cgtcggcggt tgcgtttatc ggaccggctt cgtttgcgtg ggttaagggc gatgttcagg
      361 tcttggtgct gggcatcatt atgctgggta tggggatgac tttgggcagg gaggactacc
      421 ggattttggc gcagcgtcct ttggatgtgt ttatcggtgc ggcggcgcaa tataccgtga
      481 tgccgttgct cgccatcggt attgccaagc tgttcgacct ttcgccgggg ctgactttgg
      541 ggctggtgtt ggtggggacg tgtccgggcg gcgtgtcgtc caacattatg agtttccttg
      601 ccaaaggcga tgtggcgttt tcagtcggta tgacgacggt gtctacggtg ctggctccgg
      661 ccgttacgcc tttgtggatg acctgcctgg tcggtcagac ggtggatatg gacggttggg
      721 ggatgttccg gtttatgctg ctggtcacgc ttttgccggt ggtgctgggt tcggcggcaa
      781 atatcctgct gcacggaaaa cattggtttg aaaatgtccg tgccgttatg ccgggcgtgg
      841 cggtattggc atttgcctgc attgtcggcg gcgtggcttc ggttcacgga caccgttttg
      901 ccgaatcggc gttggtaatg gtgttggcga ttgcggtaca caatatcgcc ggctatgtgt
      961 caggctatta cgccgccgcg ctgtttggta tggatacggc aaaaaaacgc accttggcaa
     1021 tcgaagtcgg cgtgcagaat gccggtttgg caacaggatt gagcgcgaaa tttttcccag
     1081 gcaaccccga atcggcggtt gcggcggcgg tcgcctgcgt gtggcattcg gtttcgggga
     1141 cggtattggg caacttgttc gctctgtggg acaagcgtcg ggacgcttag tcgggcgtgt
     1201 ccgaaccgtc ccacgatata tagtggatta actttaaacc ggtacggcgt tgcc
//
LOCUS       DAXIFD010000251         1240 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.251, whole genome shotgun sequence.
ACCESSION   DAXIFD010000251 DAXIFD010000000
VERSION     DAXIFD010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.251"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            57..782
                     /locus_tag="ACFOCN_002019"
     CDS             57..782
                     /locus_tag="ACFOCN_002019"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HFC6971098.1"
                     /translation="MPRFHLPENLSIGQTVNLPDNIVRHLNVLRVRPNENITLFDGKG
                     KAHAARLTVLEKRRAGAEILHEETADAESPLNITLIQSISSGERMDFTLQKSVELGVT
                     AIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKM
                     PSESTKLIMSINRARKLGDIRHPSGAIVFMVGPEGGWTEQEEQQAFEAGFQAVTLGKR
                     ILRTETAPLAALAAMQTLWGDFA"
BASE COUNT          338 a          388 c          285 g          229 t
ORIGIN      
        1 gtccgtttcc atcacgccgc tgcgacagat tataaccgtc cgaaccgcca aaaactatgc
       61 cccgattcca cctgcccgaa aacctttcca tcggacaaac cgtcaacctg cccgacaaca
      121 tcgtccgcca cctcaacgtc ctgcgcgtcc gccccaacga aaacatcacc ctcttcgacg
      181 gcaaaggcaa ggcacacgcc gcacggctga ccgttttgga aaaacgccgc gccggggcgg
      241 aaatcctgca cgaagaaacc gccgatgccg agtccccgct gaacatcacg ctcatccaat
      301 ccatatcttc cggcgaacgt atggacttta ccctgcaaaa aagcgtcgaa ctcggcgtaa
      361 ccgccataca gcccgtcatc agcgaacgct gcatcgtccg cctcgacggg gaacgcgccg
      421 ccaaacgcct cgcacgctgg caggaaatcg tcatctccgc gtgcgaacaa agcggcagga
      481 acaccgttcc ccccgtactg cccatcatcg gctaccgtga agcactcgac aaaatgccgt
      541 ctgaaagcac caagctgatt atgagcatca accgcgcccg caaactcggc gacatccgcc
      601 acccgtctgg cgcaatcgtc tttatggttg ggcccgaagg cggctggaca gaacaggaag
      661 aacaacaggc atttgaagct ggctttcagg cggttacact cggcaaacgg attttacgca
      721 cagaaaccgc cccactcgcc gccctcgccg ccatgcagac gctttggggc gatttcgcat
      781 aaacagaaat gccgtctgaa acccgttcag acggcatttt gcagccgatt aagatagtag
      841 gttcaaataa gatttcccgt gtcgtcattc ccgcgaaagc gggaatctag aaacgaaaaa
      901 ctacagggat ttatccgaaa caacaaccct ctccgccgtc attcccgcaa aagcgggaat
      961 ctagaaacga aaaactacag ggatttatcc gaaacaacaa accctctccg ccatcattcc
     1021 cgcaaaagcg ggaatctaga aatttaatgt tgcggtgatt tatcggaaat gactgaaact
     1081 caacgaaccg gattcccact ttcgcgggaa tgacgaagtg gaagttaccc gaaacccaaa
     1141 acaagcgaaa ccgaacggac tggattcccg cctgcgcggg aatgacgaga ttttaggttt
     1201 ctatttttgg ttttctgttc tcgcgggaat aacggaattt
//
LOCUS       DAXIFD010000252         1211 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.252, whole genome shotgun sequence.
ACCESSION   DAXIFD010000252 DAXIFD010000000
VERSION     DAXIFD010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.252"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..499
                     /locus_tag="ACFOCN_002020"
     CDS             <1..499
                     /locus_tag="ACFOCN_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009118682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HFC6971099.1"
                     /translation="PGEAIGTLVLFSSRKQMQDVALRLPGDYLPLLLVQGELPKAVLL
                     QKHHRAIEEGKASIIFGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIE
                     QRGGNPFIEITVPEAGIKLIQAVGRLIRTEQDYGRVTILDNRVKTQRYGQQLLAGLPP
                     FKRIG"
     gene            535..1149
                     /locus_tag="ACFOCN_002021"
     CDS             535..1149
                     /locus_tag="ACFOCN_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HFC6971100.1"
                     /translation="MNFTRLLNQVLSTVQKKGNTFSDSPLNSFGGGAPVAGAASMLLN
                     GKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRT
                     MIAAAASDGMIDEAERRTIEQESGTDPETAAWLAAEYRLPASIGDIATAVGNDEALAA
                     EAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF"
BASE COUNT          319 a          393 c          303 g          196 t
ORIGIN      
        1 gcccggcgaa gccatcggca cgctcgtctt gttttcctcg cgcaaacaaa tgcaggatgt
       61 cgccctgcgc ctgcccggag actacctgcc gctcttgctc gtacaaggcg aattacccaa
      121 agccgttctc ctgcaaaaac accaccgggc catagaagaa ggcaaagcca gcatcatctt
      181 cggactcgac agctttgccg aaggactcga cctgcccggc accgcctgcg tgcaagtcat
      241 catcgccaaa cttcccttcg ccatgcccga caaccccatc gaaaaaaccc aaaaccgctg
      301 gatagaacag cgcggcggca accctttcat cgaaatcacc gtccccgaag ccggcatcaa
      361 actcatccag gccgtcggcc gcctcatccg caccgaacaa gactacggcc gcgtaaccat
      421 cctcgacaac cgcgtcaaaa cacagcggta cggccaacaa ttattagccg gcctgccacc
      481 gtttaaaagg atagggtaaa cctaccgccc tgcccgcaac agaaaggaaa aatcatgaac
      541 ttcacccgac tgctcaacca agtcttaagc acggttcaaa aaaaaggcaa caccttctcc
      601 gacagcccgc tcaattcatt cggcggaggc gcgccggttg ccggtgccgc gtccatgctg
      661 ctgaacggta aaaaccgcaa aaccattacc aaaatcggtt cgaccgccgc tttgggctac
      721 ctcgcctacc ggggctatca gatgtggcag caaaacaaag ggcgggcaac cgtaacacaa
      781 agcgatttcc aacctgccgg agaaactgaa gaaacataca gccgcaccgt attgcgcacc
      841 atgatagccg ccgccgcttc agacggcatg atagacgaag ccgaacgccg gactatcgaa
      901 caggaaagcg gcacagaccc cgaaactgcc gcatggctcg ccgccgaata ccgcctgccc
      961 gcaagcatcg gggacatcgc caccgccgtc ggcaacgatg aggcgttggc ggcggaggcc
     1021 tatctggcgg caaggttggt ctgtgccgat ttgtcgcgga aagaaaccgt cttcctcgcc
     1081 cgcctgtcgc aggctttgaa actggatgac aatctggtgg agagtttgga aaggcaattg
     1141 gggttttgat gacacagcca gggagggaaa atcatcaaaa aacggttatt ccgaccccgg
     1201 cctcaaaacg g
//
LOCUS       DAXIFD010000253         1191 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.253, whole genome shotgun sequence.
ACCESSION   DAXIFD010000253 DAXIFD010000000
VERSION     DAXIFD010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.253"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            275..543
                     /locus_tag="ACFOCN_002022"
                     /pseudo
     CDS             275..543
                     /locus_tag="ACFOCN_002022"
                     /inference="COORDINATES: protein motif:HMM:NF017953.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
     gene            complement(633..1082)
                     /locus_tag="ACFOCN_002023"
     CDS             complement(633..1082)
                     /locus_tag="ACFOCN_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6971101.1"
                     /translation="MTDNRGFTLVELISVVLILSVLALIVYPSYRNYIEKAKINAVRA
                     ALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEGFCIRLNGIARGALDSKFMLKAV
                     AIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK"
BASE COUNT          400 a          259 c          173 g          359 t
ORIGIN      
        1 ttatgtctaa aggtgcaaac atgccttaaa ttaccatagt ggattaaatt taaatcagga
       61 caaggcgagg caacgctgta ctggtttaaa tttaatccac tatatattgc ataggcaaaa
      121 tacaagccta taacgaattg gaaacaaaat gccgtctgaa aacatcttca gacggcatta
      181 taaaatctgt tcaccttttc agatgagtaa tgtacaccct tatacaattt ttgctactat
      241 gccccataaa tccacggcta aagatatcct tattatgtcc tatgatttat cgaaacgact
      301 tgtaatcggc ttagcatcaa gtgccctatt cgacttatcc gaatcggata atatatttag
      361 aatggaaggg gcagaaacct ataggcaata tcagagagaa aaacaaaacc atcccctaaa
      421 aaaggcgttg tctttccatt tattaaaaaa cttctgtcaa tcaatgaaat aaacccaaac
      481 gacccaacga ttgggtttat tcttttatcc agaaacaatc cagatacaga ttacgagtca
      541 taactatagg cttaatatta cacgattttc attccatcaa ggcggaaaac cgcacaaata
      601 ctgaaacact atcgatcgat ttgtaaacaa gcctacttaa gtaacttgca gtccttatca
      661 tttcctttaa aataatccag cccgtcacta cacgaactgg cggacttctt gcaaataaag
      721 gttactagat tttcattcat cttaataata aaaggatttt tatctttatc tatggctacc
      781 gccttcaaca tgaatttact gtctaaggcc ccgcgcgcga ttccattcaa acggatacaa
      841 aagccttctg cctctttaat cggcaaactt ggccatttgg tagatgtttg tttaaatctc
      901 ccattctgca gataaaactt ttccataaaa tgtgcatttt ctaacaaggc tgcccgcact
      961 gcatttatct ttgctttctc aatataattg cgatagctcg gataaacaat taaagcaagt
     1021 acagacaata tcaagaccac tgatattaat tcaaccagcg taaacccccg attatcagtc
     1081 attactttac ttccaataag aacagattat tcaacatatt tctttgaaca gacttactat
     1141 cccattcaac agtatgcata tttcccactc tattttttag cggccggtat a
//
LOCUS       DAXIFD010000254         1144 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.254, whole genome shotgun sequence.
ACCESSION   DAXIFD010000254 DAXIFD010000000
VERSION     DAXIFD010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.254"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>1144
                     /gene="tuf"
                     /locus_tag="ACFOCN_002024"
     CDS             <1..>1144
                     /gene="tuf"
                     /locus_tag="ACFOCN_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012081251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFC6971102.1"
                     /translation="RSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFGGAAKAYDQID
                     NAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA
                     DGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELVEMEIRDLLSSYDFPGDD
                     CPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVDKPFLLPIEDVFSISGRG
                     TVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTK
                     REDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGA
                     VTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGV"
BASE COUNT          296 a          328 c          300 g          220 t
ORIGIN      
        1 acgtagcaaa ccgcacgtaa acgttggcac catcggtcac gttgaccatg gtaaaaccac
       61 cctgactgcc gctttgacta ctattttggc taaaaaattc ggcggtgctg caaaagctta
      121 cgaccaaatc gacaacgcac ccgaagaaaa agcacgcggt attaccatta acacctcgca
      181 cgtggaatac gaaaccgaaa cccgccacta cgcacacgta gactgcccgg ggcacgccga
      241 ctacgttaaa aacatgatta ccggcgccgc acaaatggac ggtgcaatcc tggtatgttc
      301 cgcagccgac ggccctatgc cgcaaacccg cgaacacatc ctgctggccc gccaagtagg
      361 cgtaccttac atcatcgtgt tcatgaacaa atgcgacatg gtcgacgatg ccgagctgtt
      421 ggaactggtt gaaatggaaa tccgcgacct gctgtccagc tacgacttcc ccggcgacga
      481 ctgcccgatt gtacaaggtt ccgcactgaa agccttggaa ggcgatgccg cttacgaaga
      541 aaaaatcttc gaactggctg ccgcattgga cagctacatc ccgactcccg agcgtgccgt
      601 ggacaaaccg ttcctgctgc ctatcgaaga cgtgttctcc atttccggcc gcggtacagt
      661 agtaaccggc cgtgtagagc gcggtatcat ccacgttggt gacgagatcg aaatcgtcgg
      721 tctgaaagaa acccaaaaaa ccacctgtac cggcgttgaa atgttccgca aactgctgga
      781 cgaaggtcag gcgggcgaca acgtaggcgt attgctgcgc ggtaccaaac gtgaagacgt
      841 agagcgtggt caggtattgg ccaaaccggg tactatcact cctcacacca agttcaaagc
      901 agaagtgtac gtactgagca aagaagaggg cggccgccat accccgttct tcgccaacta
      961 ccgtccccaa ttctacttcc gtaccaccga cgtaaccggc gcggttactt tggaagaagg
     1021 tgtggaaatg gtaatgccgg gtgagaacgt aaccattacc gtagaactga ttgcgcctat
     1081 cgctatggaa gaaggcctgc gctttgcgat tcgcgaaggc ggccgtaccg tgggtgccgg
     1141 cgtg
//
LOCUS       DAXIFD010000255         1142 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.255, whole genome shotgun sequence.
ACCESSION   DAXIFD010000255 DAXIFD010000000
VERSION     DAXIFD010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.255"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            1..703
                     /locus_tag="ACFOCN_002025"
                     /pseudo
     CDS             1..703
                     /locus_tag="ACFOCN_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980816.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          359 a          242 c          258 g          283 t
ORIGIN      
        1 aaaaagagag tggactggaa tatttgagat cgttaataat aacatcaagc aatttagaga
       61 tctgttccca aatccggaag gctggatcga tgatggtcac caatgtttcg ctccttgggt
      121 taaagaaact aaaaaacgca atggcaaata tcatgtctac gaccccctcg ccctagattt
      181 ggacggagac ggtatagaaa ccgttgccac caaaggcttt gcaggcagct tatttgatca
      241 caccaacaac ggtatccgca ccgccaccgg ttgggttgct gccgatgacg gtctgcttgt
      301 gcgcgatttg aacggcaacg gcatcatcga caacggcgcg gaactcttcg gcgacaacac
      361 caaactggca gacggttctt ttgccaaaca cggctatgca gctttggccg aattggattc
      421 aaacggcgac aacatcatca acgcggcaga cgccgcattc caatccctgc gtgtatggca
      481 ggatctcaac caggacggca tttcccaagc taatgaattg cgtacccttg aagaattggg
      541 tatccaatct ttggatctcg cctataaaga tgtaaataaa aatctcggta acggtaacac
      601 tttggctcag caaggcagct ataccaaaac agacggtaca accgcaaaaa tgggggattt
      661 acttttagca gccgacaatc tgcacagccg cttcacgaac aaaatgctat ccattagcca
      721 tgttcgggaa aacacgattt ccccgtttgt tttaggctgt ctaaacaaat aaccataaat
      781 gtatatcatt atttaaaata aataaaagta tttaactatt attgacgaaa ttttagagaa
      841 agagtagact gtcgattaaa tgacaaacaa tagtgagaaa ggaaatattt actatccgag
      901 cacagagcat attttaggta gcctgtaact gttcctgctg gcggaagagg atgaaggtgg
      961 acttacccga gaataaatgt cctgttgtgt gatatggatg ccatgccgcg aagcaattga
     1021 tgcaatcacg gcagtcctac ttgaatgaaa cctgtcgttg cagaatttga aaacgctatt
     1081 tttaagaaag gataaaggga gaaagaattt ttggttttta agctgcatga aaccgtgttg
     1141 ga
//
LOCUS       DAXIFD010000256         1133 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.256, whole genome shotgun sequence.
ACCESSION   DAXIFD010000256 DAXIFD010000000
VERSION     DAXIFD010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.256"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(90..641)
                     /locus_tag="ACFOCN_002026"
     CDS             complement(90..641)
                     /locus_tag="ACFOCN_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971103.1"
                     /translation="MKVLNGWSDRKMWRVLSALPIGVVFFDLIYGFVLNVLQGLDLQR
                     AVPDLEGVLAVTPDIAFNSLQIVANGGMAAVVCFGLAVVFLLNRSVRRRQVLEIGVFQ
                     MLGLVAVLAFSAPSVWEWANALPLLLKGADVVNTGNARYVLTALCMPFPAVSCVIGLV
                     GRFRLQTASGRAAKSGGAGKADG"
     gene            complement(695..1133)
                     /locus_tag="ACFOCN_002027"
                     /pseudo
     CDS             complement(695..1133)
                     /locus_tag="ACFOCN_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086557955.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT          331 a          360 c          213 g          229 t
ORIGIN      
        1 aaagaaaccg ccattagcac tacacccccc caagctgcgg ctgccaaaca catcggctgc
       61 ttctcgacgc acccgctgaa aaatgcgtcc tatccgtccg ccttgcccgc accccctgac
      121 tttgccgccc tgcccgatgc cgtctgaagc ctgaaccgcc ccaccagccc gatgacgcac
      181 gacaccgccg gaaagggcat acacaaagcc gtcagcacat aacgcgcatt ccccgtattg
      241 accacgtccg cgcccttcag cagcagcggt agcgcgttcg cccactccca caccgacggc
      301 gcgctgaacg ccaataccgc caccagcccc aacatctgga acaccccgat ttccaacacc
      361 tgccgccgcc gcaccgaacg gttgagcaaa aacacaaccg ccaacccgaa acagaccacc
      421 gccgccatac cgccgttggc gacaatctgc aaactgttga atgcaatatc gggcgtaacc
      481 gccaacacgc cttccaaatc cggcacggca cgctgcaaat ccaaaccctg caacacattc
      541 aacacaaaac cgtagatcaa atcaaaaaac accacgccta tcggcaaagc actcaaaacc
      601 cgccacatct tcctgtccga ccaaccgttc aaaactttca ttttacccga ccacgcaagc
      661 cgccgaacaa aaaataaggg gctgtcctag ataactagga caaacttgat tttactaatt
      721 gttttaaaat ggaacaagaa cttttatctc actgttgtta aaacgtcgtt cgcactcctt
      781 taaatacagc tcaaaatgcg ctttgggaat gccgttaaac ttgcgtaaat gacgttttgc
      841 ctggttccaa aagttctcaa ttccattaat atggttttgt cgttcagcaa aatgtgtgct
      901 gtgattgata cgaaaacgaa gtttcagcga agctaaaatg gctaaattcg cgcacatcta
      961 atacatcata gctacgataa caatccgtat aaacaatact gtcaggtttc acttgttcac
     1021 ggataatagg aaataaagta gcggtttgag tattcggtac tgtaaccgta taaaccttac
     1081 catttcgctt caaaagaccg aatacggcga ctttaccggc agcaccgcga ccg
//
LOCUS       DAXIFD010000257         1033 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.257, whole genome shotgun sequence.
ACCESSION   DAXIFD010000257 DAXIFD010000000
VERSION     DAXIFD010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.257"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(300..686)
                     /locus_tag="ACFOCN_002028"
     CDS             complement(300..686)
                     /locus_tag="ACFOCN_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HFC6971104.1"
                     /translation="MRKILLDTHALLWWLLDDKKLGTSARKLIENPRNAIFVSAASIW
                     EISIKQNKGLLKLPEEFFDVLQEEDFEMLPIGLFHAKQAGSLPEIHKDPFDRMLIAQT
                     QAEGFELMTVDEYIPQYGIRVVNASS"
     gene            complement(683..928)
                     /locus_tag="ACFOCN_002029"
     CDS             complement(683..928)
                     /locus_tag="ACFOCN_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HFC6971105.1"
                     /translation="MFQANIHQAKTNLSQLIQRAEAGEIVIIAKAGKPCVQLTGIEKP
                     ARNAGRLKKFSHMGNTDISRILEDDNETAALFEESAL"
BASE COUNT          279 a          243 c          185 g          326 t
ORIGIN      
        1 acagccatat atattaagta cctgctcttt atgcgctttt ttaggaaagg aagatcaaac
       61 ggttcaatag cgaagtcttg cccaaatttg atggacagga tatagaatac atgcgtgcat
      121 accacaccct gccaaagttg ggagatgcac ttaaggttgc acttgtggtc gccaactatg
      181 cctatacacg cggatttccc gcgtttatag gccgcgacgg aagtctggct tttaagcgaa
      241 gacaataacc gaaaagaccg cctcggcggt ctttcttgtg tacacagttt ttgtatttgt
      301 cagcttgatg cattgacaac tctaattcca tattgcggaa tatattcatc gacagtcatc
      361 agttcaaagc cttccgcttg ggtttgtgca atcaacatcc tatcgaaagg gtctttgtgt
      421 atttccggaa ggcttccagc ctgttttgca tgaaacagac ctataggcag catttcaaaa
      481 tcctcttctt gaagcacatc aaaaaactct tccggtaatt tcaacaaccc cttgttctgc
      541 ttgatggaaa tttcccaaat acttgctgca ctgacaaaga tcgcatttct cggattttct
      601 atcagtttgc gtgcagatgt ccccagtttc ttgtcatcca acaaccacca cagcaaagca
      661 tgggtatcaa gcagaatctt tctcacagag ccgactcctc aaataaagct gccgtttcat
      721 tgtcatcctc aagaatacgt gaaatatccg tatttcccat atgactgaat tttttcaacc
      781 ttcctgcatt tcgtgccggt ttttcaatac cggttagttg gacgcaaggc ttacctgctt
      841 tcgcaataat aacgatttcc cctgcttctg ctctttgaat caattgactc aaattggttt
      901 ttgcctgatg aatatttgct tgaaacataa cacttctcat gattagctaa cttaactaat
      961 atacatcatt accaagattt tgggaatctc attacatata tttgattata tccgccgttt
     1021 tattcacacc ttg
//
LOCUS       DAXIFD010000258         1031 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.258, whole genome shotgun sequence.
ACCESSION   DAXIFD010000258 DAXIFD010000000
VERSION     DAXIFD010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.258"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            314..484
                     /locus_tag="ACFOCN_002030"
     CDS             314..484
                     /locus_tag="ACFOCN_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HFC6971106.1"
                     /translation="MAQYMCGPCGWIYDEEHGDPEHGIPPGTKFEDIPDDWKCPECGV
                     GKEDFYLLDFVI"
BASE COUNT          312 a          271 c          230 g          218 t
ORIGIN      
        1 aaaaaaccga aacctccaaa ccgtcattcc cacggaagtg ggaatccagt aaccgaaaaa
       61 ccacaggaat ctatcgaaaa aaaacccaac ccccaaaaaa accgggcgga tacctcacca
      121 tcctcccaaa ccctgattta tagcggatga acaaaaatca gggcaagacg gcgaaaccgc
      181 agacagtaca aatagtacga aaccgattca cttggtgctt gagcacctta gagaatcgtt
      241 ctctttgagc taaggcgagg caacgccgta ctggtttttg ttcatccgct atacaaaaaa
      301 caaggaaaca caaatggcgc aatatatgtg cggcccctgc ggctggattt acgatgaaga
      361 acacggcgac cccgaacacg gcatcccccc tgggacaaag tttgaagaca tccccgacga
      421 ctggaaatgc cccgaatgcg gcgtgggcaa agaagatttc tacctgttgg atttcgtgat
      481 atagcggcag ccgcaccctt agggaaaacc ccgtcatccg gcgttccgcc tgcggcggca
      541 gggaacgccg ttttatagtg gattaacaaa aatcaggaca aggcgacgaa gccgcagaca
      601 gtacaaatag tacggaaccg attcacttgt taaagaatcg ttctctttga gctaaggcga
      661 ggcaacgccg tactggtttt tgttaatcca ctatatccgt ttgcgcccgc caagccgtgt
      721 tgcacagatg cgacacggct tttttctttc tgttgtcaga atgtaaattt tcgtcaaaaa
      781 acatcaaaaa tcaccccccc cccgaatttg cgtaaaataa agtgtaatcc ctttgatcat
      841 aagggaatgt tgacaattag atcgattctc ctaggctgac tttcgcaata aatggggttg
      901 tcaataattg tgtatggtcg tttgccgtcc ggcggccgtc attcccgcga acgcaggaat
      961 ccagcaacac aatgcagcag gactttatcg gaaaaaaccg aaaccccacc gactgtcatt
     1021 cccgcaaaag c
//
LOCUS       DAXIFD010000259          997 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.259, whole genome shotgun sequence.
ACCESSION   DAXIFD010000259 DAXIFD010000000
VERSION     DAXIFD010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.259"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(122..550)
                     /locus_tag="ACFOCN_002031"
     CDS             complement(122..550)
                     /locus_tag="ACFOCN_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mor transcription activator family protein"
                     /protein_id="HFC6971107.1"
                     /translation="MGFEKVEHLLPDTVLDIVDVIGLAATEQLVKAIGGARFKFGKGK
                     VDTERLAILVEAIGEVKTHELLQVYGGEELYVPRCGKALIQLRNHRFYQEFVKLRDID
                     KESGLMAMTKLCPKYGISSRTGYTIINEMSRPAAQQAALF"
     gene            complement(531..965)
                     /locus_tag="ACFOCN_002032"
     CDS             complement(531..965)
                     /locus_tag="ACFOCN_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gp16 family protein"
                     /protein_id="HFC6971108.1"
                     /translation="MRRALIAKIKIAQKELGLDDGTYRAVLERVTDKRSCADMDVSEL
                     ESVVADMRSHGFKPKAKGNPHGKPHLRRTSSAAMLDKVEALLTVGGKHWNYAHAMARR
                     MFGKDKVEYLDDTQLHKLVAALQIAENRKTEKAGGDDGVRKS"
BASE COUNT          248 a          308 c          181 g          260 t
ORIGIN      
        1 tttgaaaacc ccattaaacc gtctttaacc catcgtcccg aacggtagat gtttcacccc
       61 tgcaaaccaa aaaaaagacc gtctgaatac agacggccaa agcctggtca cacatcactg
      121 cctaaaataa agctgcctgc tgtgccgcag gtcggctcat ttcattgata atcgtatatc
      181 ccgttcgtga agagatgccg tatttagggc atagcttcgt catcgccata agcccgctct
      241 ccttatcaat atcgcgcaat ttgacaaact cctgataaaa cctatggttt ctcaactgta
      301 ttaacgcctt gccgcaccgt gggacataca attcctcgcc accatatacc tgcaacagct
      361 catgtgtttt cacttcgccg atggcttcga ccaaaattgc caaacgctcg gtgtccacct
      421 tgcccttacc aaatttaaac cgcgccccgc caatcgcctt gaccagctgt tccgtcgctg
      481 ccagtccgat gacatccaca atgtccaaca cggtatccgg caataaatgt tcaacttttt
      541 cgaaccccat catccccacc cgctttttcc gttttcctgt tttccgcaat ctgcaacgca
      601 gcaaccagtt tatgtagctg cgtatcgtct aaatattcga ccttatcctt accaaacatc
      661 cgccgcgcca ttgcgtgtgc atagttccaa tgtttgccgc cgacggtcag cagggcttcg
      721 actttgtcca gcattgccgc tgatgatgtc cgacgcagat gcggtttgcc gtgtgggtta
      781 ccttttgctt taggcttaaa tccgtgcgac cgcatatcag cgacaacaga ctcaagttca
      841 gaaacatcca tatccgcaca cgaccgctta tccgtcacac gctccaacac cgcgcgatag
      901 gtaccgtcat ccaagcccag ctccttttga gcaatcttaa ttttcgcaat caacgcccgg
      961 cgcattatct ctctaataca acatatagta taaatta
//
LOCUS       DAXIFD010000260          965 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.260, whole genome shotgun sequence.
ACCESSION   DAXIFD010000260 DAXIFD010000000
VERSION     DAXIFD010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.260"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            99..740
                     /locus_tag="ACFOCN_002033"
     CDS             99..740
                     /locus_tag="ACFOCN_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GrxB family glutaredoxin"
                     /protein_id="HFC6971109.1"
                     /translation="MKLYIYDHCPFCVRARMAAGLFGADVEEAVLANDDEATPIGMIG
                     AKQVPVLQKEDGSFMGESLDIVRHFDREDRLKDEVRPEIRAWLDKVGGYNDKLVQPRV
                     IKIGLPEFATPEAVKYFTDKKEKSIGSFSANLNKTAQYLERINADLQELENLMDGASD
                     GINGGIGMEDILVFPVLRNLTVVRGIAFPRKTMDYLIGMSEKSGVPLYFDRAL"
BASE COUNT          256 a          193 c          264 g          252 t
ORIGIN      
        1 ttatttattt acggtgcata ggcgggaaga taaacttgtt tcgggtggcg cggggtgtta
       61 aggtagccgg taccgacagg ttgacgagga atattttgat gaaactgtat atttacgacc
      121 attgcccgtt ttgcgtgcgt gcgcggatgg ctgccgggct gtttggcgcg gacgttgaag
      181 aagccgtgct ggcaaacgac gacgaggcaa cgccgatcgg tatgatcggt gcgaaacaag
      241 tgcccgtcct gcaaaaagaa gacggttcgt ttatgggcga gagtttggac attgtgcggc
      301 atttcgaccg cgaagaccgt ctgaaagacg aagtccgccc cgagatacgg gcgtggctgg
      361 acaaggtggg cggatacaac gacaaactgg tgcagccgcg cgtgatcaaa atcgggctgc
      421 ctgaatttgc aacgccggaa gcggtgaaat attttacaga caaaaaagag aaaagcatcg
      481 gcagcttttc cgccaatttg aataaaaccg cccaatacct cgaacggata aacgcagatt
      541 tgcaagagtt ggaaaatttg atggacggtg cttcagacgg catcaacggc ggaatcggta
      601 tggaggatat tttggttttc cccgttttga ggaatctgac cgtggtgcgc ggcatcgcgt
      661 tccctcggaa gacgatggat tatttaatcg gtatgagtga aaaatcgggc gtgccacttt
      721 atttcgacag ggcattgtaa aagtggctgt tattaactga cagatgaagg aggttctacc
      781 ctatttgagg taaactctat ttaccattgg ccgaaatacc agtgcttatc tccaagacga
      841 ccttcccaat cccttttgcc tcttaaaaag aagtgactag tgtgtaaagt tatagttcct
      901 tttatagctt tccaataaaa ttaaagtatt taaaagcttg tttagttcta atttgttaat
      961 ttctg
//
LOCUS       DAXIFD010000261          962 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.261, whole genome shotgun sequence.
ACCESSION   DAXIFD010000261 DAXIFD010000000
VERSION     DAXIFD010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.261"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..915
                     /gene="odhB"
                     /locus_tag="ACFOCN_002034"
     CDS             <1..915
                     /gene="odhB"
                     /locus_tag="ACFOCN_002034"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HFC6971110.1"
                     /translation="APAEAAPAAAPAAAQNNAAMPAAAKLAAESGVDVNALQGSGRDG
                     RVLKEDVQNAAAKPAAAAAPAVALPAGARPEERVPMSRLRARVAERLLASQQENAILT
                     TFNEVNMKPIMDLRAKYKEKFEKEHGVKLGFMSFFVKAAVAALKKYPVVNASVDGKDI
                     VYHGYFDIGIAIGSPRGLVVPILRDADQMSIADIEQAIVDYAKKAKDGKIAIEDLTGG
                     TFSITNGGTFGSMMSTPIINPPQSAILGMHATKERAVVENGQVVVRPMMYLALSYDHR
                     IIDGREAVLTLVAIKDALEDPARLLLDL"
BASE COUNT          235 a          266 c          241 g          220 t
ORIGIN      
        1 gctcctgccg aagctgcccc ggccgccgct cctgctgctg cacaaaacaa cgccgctatg
       61 cctgccgccg ccaaactggc tgcagagagc ggtgttgacg tgaacgcatt gcaaggttcc
      121 ggccgtgacg gtcgcgtatt gaaagaagac gtacaaaatg ccgcagccaa acctgccgca
      181 gccgctgctc ctgccgttgc acttcctgcc ggcgcacgtc ctgaagaacg cgtaccgatg
      241 agccgcctgc gtgcccgtgt tgcagaacgc ctcttggctt ctcaacaaga aaacgccatt
      301 ctgactacat tcaacgaagt caacatgaaa ccaatcatgg acttgcgtgc gaagtacaaa
      361 gaaaaattcg agaaagaaca cggcgtgaaa ctgggcttta tgtccttctt cgttaaagcc
      421 gctgttgcag ccctgaaaaa atacccggtt gtgaatgctt ctgttgacgg caaagacatt
      481 gtgtaccacg gctacttcga catcggtatc gcgattggca gcccacgcgg tttggttgtg
      541 ccaatcctgc gcgatgccga ccaaatgagc attgccgaca tcgaacaagc aattgttgat
      601 tacgcgaaaa aagccaaaga cggcaaaatc gctatcgaag atctgaccgg cggtacattc
      661 agtattacca acggcggtac tttcggttct atgatgtcca ccccgatcat caatccgcct
      721 caatctgcga ttttgggtat gcacgccact aaagagcgcg ctgtggttga aaacggccaa
      781 gttgttgtcc gtccaatgat gtatctggct ctgtcttacg accaccgtat cattgacggc
      841 cgcgaagctg tattgacctt ggtagccatt aaagacgcgt tggaagaccc agcccgcctg
      901 ttgttggatc tgtaatcgtt tcagacggcc ttttatttgt taatgaaaag gccgtctgaa
      961 tt
//
LOCUS       DAXIFD010000262          956 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.262, whole genome shotgun sequence.
ACCESSION   DAXIFD010000262 DAXIFD010000000
VERSION     DAXIFD010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.262"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..211
                     /locus_tag="ACFOCN_002035"
     CDS             <1..211
                     /locus_tag="ACFOCN_002035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971111.1"
                     /translation="LAEWLVWVGWEWLDWRNGGLKPTLRNTLRNTLQPTHQPYALPTH
                     FPANPLKILPHALKTRNNTGFRPSG"
     gene            225..725
                     /locus_tag="ACFOCN_002036"
     CDS             225..725
                     /locus_tag="ACFOCN_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6971112.1"
                     /translation="MSNYRRDFTRGAHYFFTLALQDRTKDYLIRHIDRLRLAYRETKT
                     RYPFETAAICILPDHLHFIMRLPEGDHDYPIRIAYLKTRFSQLIPKECRAPNGSKTKK
                     REAGIWQRRFWEHLIRDEQDLNNHRDYIYFNPVKHGYAASVKEWRYSSFFKDVEKGIY
                     PLDWGG"
BASE COUNT          256 a          267 c          240 g          193 t
ORIGIN      
        1 attggcggaa tggttggttt gggttgggtg ggaatggttg gattggcgga atggtgggct
       61 gaagcccacc ctacgaaaca ccctacgaaa caccctacag cctacacatc agccctacgc
      121 cctccctacc catttccctg caaatcccct aaaaatcctc ccgcacgccc tgaaaacaag
      181 gaataataca ggtttccgcc catcgggcta aaaaggggat aaatatgtca aattaccgga
      241 gggacttcac gcgcggggcg cactattttt tcacattggc tttgcaagac aggacgaagg
      301 attacctgat acggcatatc gacaggctgc gcctcgccta tcgtgaaacg aaaacacgtt
      361 atccgtttga aacggcggca atttgtattt tgccggatca cctgcatttc attatgcggc
      421 tgccggaagg cgaccacgat tacccgatac ggattgcata tttgaaaacc cggttttccc
      481 aactcatccc caaagagtgc cgcgccccca acgggagtaa aacaaaaaaa cgcgaagccg
      541 gcatttggca gcgcaggttt tgggaacacc tgatccggga cgaacaagat ttaaacaacc
      601 accgggatta tatttatttc aaccccgtga aacacgggta tgcggcgagt gtgaaggaat
      661 ggcgttattc ttccttcttc aaagacgttg aaaaaggcat ttaccctttg gattggggag
      721 ggtaaagctc ccgccgccgc caaaatccgc aggacggacg cggggcagat gagtcgggcg
      781 ggacgtaggg tgaggcgtag gtgcgtaggg tggatgtgta gggtgggctt cagcccacca
      841 atccaaccac ctccgccaat ccaaccattc ccaccaaccc aaaccaacca ttccgccaat
      901 ccccgccaaa aaccgaaacc gccgaatccc gacggtttgc caaaaaccct tgatgc
//
LOCUS       DAXIFD010000263          951 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.263, whole genome shotgun sequence.
ACCESSION   DAXIFD010000263 DAXIFD010000000
VERSION     DAXIFD010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.263"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..671)
                     /locus_tag="ACFOCN_002037"
     CDS             complement(<1..671)
                     /locus_tag="ACFOCN_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6971113.1"
                     /translation="MSNWKPDIPYNDLPPLPPKQDIESKTILKRCITARASLARLKQA
                     AELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQYRT
                     ALFAGYESLTSRPLCTQTAIMVCNAIKHPYEMAIRKTGGTALKGGNSGNVVYTPPEGE
                     ETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRILNSLLLIEK
                     GLLDLP"
BASE COUNT          223 a          199 c          237 g          292 t
ORIGIN      
        1 ggcaaatcca aaagcccttt ttcaatcaat agcaggctgt tcaatatgcg ccccgtccgc
       61 ccgttgccgt ccgtaaacgg atggatggct tcaaattggt aatgtgccgc cgccatgatg
      121 ataagcgggt ctaaatcgcc gctttcgtga ataaaccgct cccaatttgc cagcttgccg
      181 cgtatggttt cttctccttc gggcggggta tagacaacat ttccgctgtt gcctcctttt
      241 agggctgtgc cgcctgtttt gcggatggcc atttcgtagg ggtgcttgat ggcgttgcag
      301 accatgatgg cggtttgtgt gcataaaggg cggctcgtca gtgattcata gcctgcaaac
      361 agggcggtgc ggtattgcag ggcttctttc gtggcagggt cttgccgttc cgtatccatt
      421 tgcagggatt gaaacagctt atccgttgtg gttacgatgt tttcaatttc cgaacttgca
      481 cgggcttcca taacaggaag ggtgttaatc agcatggctt gattcggtat cagttctgcc
      541 gcctgcttta aacgggcaag ggatgcacgg gcggttatac aacgtttcag gatggttttg
      601 ctttcaatat cctgttttgg cggcaggggt ggtaaatcgt tatagggaat atcgggtttc
      661 cagttgctca tatttaaaat ttcggaaaat ttaaagatgt ttccagtata tgtttacgcc
      721 gtgtatatat caaggatata tgtttaaaaa tttggctttt gtaaatatat gggcggtaaa
      781 accgcattat tttatgttgt tacctatttt acaccttgtc tgcacacgat ttccaaacaa
      841 cctaaaaaga aacctgccga aaggcaggtt taaagaggtc attttaaatg tgaactaaag
      901 cttacaccct cgtagggtat cgtgtatatc agacgtactt aatatacact a
//
LOCUS       DAXIFD010000264          947 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.264, whole genome shotgun sequence.
ACCESSION   DAXIFD010000264 DAXIFD010000000
VERSION     DAXIFD010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.264"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            205..>947
                     /locus_tag="ACFOCN_002038"
     CDS             205..>947
                     /locus_tag="ACFOCN_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971114.1"
                     /translation="MAVIIFVNGIRAVNGLVKSSINTANAFAEEGLDVHLINFVGNIT
                     GAEHLYPPFHLHPNVKTSSIIDLFNDIPENVSCRNTPFYSIHQQFFKAEYSAHYKHVL
                     MKIESLLSAEDSIIFTHPLQLEMYRLANNDIKSKAKLIVQIHGNYMEEIHNYEILARN
                     IDYVDYLQTVSDEMLEEMHSHFKIKKDKLVFIPNITYPISLRKKEADFFIKDNEDIDN
                     AQKFKRISIVGSIQPRKNQLDAIKIINKI"
BASE COUNT          341 a          159 c          127 g          320 t
ORIGIN      
        1 ctgcttgcaa tattcgcaaa ggtgctcaaa tcaaaaaaac tgatattagt taataataaa
       61 atagattaag ctattcttaa attcagaata ttgcttatct atattaaaaa tttctaattt
      121 ttaaggttct gattgaaatc agaaccttat ttcaactatt actttttact cataatcgaa
      181 ttatatactt taggacttta taatatggct gttattatat ttgttaacgg aattcgggct
      241 gtaaatggcc ttgttaaatc atctatcaat actgcaaacg cttttgctga agaaggactg
      301 gatgttcatt taattaattt tgttggcaat attactggag cagagcattt atacccccca
      361 ttccacttac atcccaatgt caaaacctcc agcatcatag atttatttaa tgacattcca
      421 gaaaatgtta gctgccgaaa tactcctttt tattctattc atcaacaatt cttcaaagct
      481 gaatatagtg cccactataa gcatgttttg atgaaaattg aatctttatt atctgcagaa
      541 gatagcatta tcttcactca tcctcttcaa ctggaaatgt atcgtttagc gaataatgat
      601 atcaagtcaa aagccaaact aattgtacaa attcatggta attatatgga agaaatccat
      661 aactatgaaa ttttggcacg aaatatcgat tatgttgact atcttcaaac ggtatctgat
      721 gaaatgctgg aagaaatgca ttcccatttc aaaatcaaaa aagacaaatt agtttttatt
      781 ccaaacatca cttatcccat ttcacttaga aaaaaagaag ctgatttctt tattaaggat
      841 aatgaagaca tcgataatgc tcagaaattt aaacgtatct ctattgttgg cagcattcag
      901 ccaagaaaaa accaattgga tgccattaaa atcatcaata aaattaa
//
LOCUS       DAXIFD010000265          913 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.265, whole genome shotgun sequence.
ACCESSION   DAXIFD010000265 DAXIFD010000000
VERSION     DAXIFD010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 913)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.265"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>913
                     /locus_tag="ACFOCN_002039"
     CDS             <1..>913
                     /locus_tag="ACFOCN_002039"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006306 - obsolete DNA methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6971115.1"
                     /translation="DTAGVNTEAIYTSDGITANSTQLEQLKKLFPACFDADGNFLIDR
                     LQAEIAPQTDIGREFYEMNWLGKSYARLLRNLPPETLISEDKTHNAKPENAGSQNLLI
                     RGDNLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDE
                     AARILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEV
                     FGEGNFIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHFDNLKRPKDIRGKKIVIN
                     DELYWIQEDAVREQFGKYGNLHYEDIIE"
BASE COUNT          293 a          205 c          202 g          213 t
ORIGIN      
        1 gacacagccg gggtgaacac cgaggcaatc tacacttcag acggcattac cgccaactct
       61 acccaactcg aacagctcaa aaaactgttt cccgcctgtt ttgacgcaga cggaaatttc
      121 cttatcgaca gattacaagc cgaaattgcg ccacagaccg acatcggacg cgaattttac
      181 gaaatgaact ggctgggcaa atcatatgct cgcctgcttc gcaacctgcc gcccgaaacc
      241 ctgataagtg aagacaagac gcacaacgcc aaacccgaaa atgcaggcag ccaaaaccta
      301 ctgattcgtg gcgacaatct agaagtgttg aaacacttaa aaaacgccta cacaaacagc
      361 gtgaagatga tttacatcga cccgccctac aacaccggat cagacggctt tgtctatcag
      421 gacgaccgca aattcacacc agccgaactt gcctgcttag ccaatattga cgaagacgaa
      481 gccgcgcgga ttttagattt caccgacaaa ggctcaaact cgcacagtgc atggttgacc
      541 tttatgtatc cgcgcctgta tatcgcccgc gaactgttaa aggacgacgg cgtgattttt
      601 atctcgattg acgataacga agcggcgcag ttgaagttgt tgtgtgatga agtgtttggg
      661 gaagggaatt ttattaaaga tttaattgtt aatacatcag aaggtggtgg taatgcaaaa
      721 tatgttgtaa atgggcatga aactgtttta gtttatgcga aagatattac tcattttgac
      781 aatctaaaaa gaccaaaaga tatacgcggc aaaaaaattg taatcaatga tgaattatat
      841 tggatacagg aagatgccgt tcgcgaacag tttggcaaat atgggaactt gcattacgaa
      901 gatattattg aaa
//
LOCUS       DAXIFD010000266          906 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.266, whole genome shotgun sequence.
ACCESSION   DAXIFD010000266 DAXIFD010000000
VERSION     DAXIFD010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.266"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..216
                     /locus_tag="ACFOCN_002040"
     CDS             <1..216
                     /locus_tag="ACFOCN_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971116.1"
                     /translation="ADAGDVYCVYNIRLKQYTACQVTRVEEHGGKKTHATLLALDWQG
                     NKPLGAEELADLKPLYKDLKNNIGNIV"
     gene            547..>906
                     /locus_tag="ACFOCN_002041"
     CDS             547..>906
                     /locus_tag="ACFOCN_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein"
                     /protein_id="HFC6971117.1"
                     /translation="MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDG
                     YDVYRQLRWQQIPEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELK
                     AFPCLSSLFLTKWHKNLY"
BASE COUNT          282 a          147 c          212 g          265 t
ORIGIN      
        1 gctgatgccg gagacgtata ttgcgtctat aacatcagac tgaagcagta cactgcctgc
       61 caggttaccc gagttgaaga acacggtggc aaaaaaacac atgcgaccct gctggctttg
      121 gactggcagg gcaacaaacc gcttggggcg gaggagctgg cggatttgaa accactttac
      181 aaagacttaa agaataatat tggaaatatt gtatgaacaa aaaattaaac tatattttta
      241 tgttggactg tttagggttg gtgatattgt ttacttgtat aatagctact tttgaaagag
      301 attatggatt taaaattttt actaattcta agaggcctga attttattat tggattggaa
      361 tgttttatta tggaattatt tcttgctggt ttgattatca attaatttca acaaaggcga
      421 attcgtataa aagaaaagtt aaacaatata aaattttttc agtaatattt tcagttttga
      481 tatttatttc tactatagta aaactttaaa ttttggagca aaaatttatg agcgattcaa
      541 ttgaatatgt attgggaacg cggtctgcac atgtataagg caagtgctgt cgtgccaacg
      601 ggatatgtac gggttgggaa taccgcgccg ctggtcggcg aagacacgca acggtatgcc
      661 tctttttggg gcgacggcta cgacgtgtac cgtcagttga gatggcagca gatacccgaa
      721 aaacagagaa aggcattcaa aaaagccgcc aaaagcaaaa agaccgtgat gtttgccgga
      781 cgggaatacg gcatatccaa acagaatttg agcgatgttt gggatgattt tgaagacgcg
      841 atggaactga aggcgtttcc ctgcctgtct tcgctgtttc tgaccaagtg gcataaaaat
      901 ctatat
//
LOCUS       DAXIFD010000267          875 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.267, whole genome shotgun sequence.
ACCESSION   DAXIFD010000267 DAXIFD010000000
VERSION     DAXIFD010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.267"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            338..784
                     /locus_tag="ACFOCN_002042"
     CDS             338..784
                     /locus_tag="ACFOCN_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HFC6971118.1"
                     /translation="MKAIQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQMSEAL
                     TLAEGQKSAVVEYYSDNGTFPNSNTSAGIAASNEIKGKYVASVKVEGNASVASITATM
                     NSSNVNKDIKGKTLVLVGKQNSGSFSWECKKGSVDEKFLPSTCRTK"
BASE COUNT          278 a          226 c          183 g          188 t
ORIGIN      
        1 aaaaaaacca aaaaaaaccc aatctgacaa aatctgacaa aaaacgtcag cccgaaactg
       61 acaaaaattg tcacaactga caagaaacgt cagcccgccg cattattacg ccgcaagccg
      121 cgccgcgttg atataaaaaa atacccatac cagacagaca aataaaaaaa tattctgtaa
      181 aatgccgagc tgaaccctgt tttggcacgc cgcttgctgg taagaaggcg aaccgaagta
      241 aaaaaaacca cggtcaaata cattacgggt ttacgtttgc ggcggatgcc gcaaatttcc
      301 aatcaaactt aaacattttc aaacaggagt catccaaatg aaagcaatcc aaaaaggttt
      361 caccctgatc gagctgatga tcgtcatcgc catcgtcggt atcttggcag ccgtcgccct
      421 gcccgcatac caagactaca ccgcgcgcgc ccaaatgtcc gaagccctga ctttggcaga
      481 aggtcaaaaa tccgcagtgg tcgagtatta ttccgacaac ggcacattcc cgaacagcaa
      541 tacttccgca ggtattgctg cctctaacga gattaaaggt aagtatgtgg catcggttaa
      601 ggttgaaggt aatgcctctg ttgcttctat taccgctacc atgaactcta gtaatgtgaa
      661 taaggacatc aaaggtaaaa ccttggtact cgtcggcaaa caaaactccg gctcgttctc
      721 ttgggaatgt aaaaaaggtt ctgtggacga aaaattcttg ccatctacct gccgcaccaa
      781 ataaggacaa tgaccgggtt tgacccggtc gtgaaaacaa atgccgcccg aaccgctcgg
      841 gcggcatttt ctattcccct ttgccgctgt agggc
//
LOCUS       DAXIFD010000268          867 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.268, whole genome shotgun sequence.
ACCESSION   DAXIFD010000268 DAXIFD010000000
VERSION     DAXIFD010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.268"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(48..827)
                     /locus_tag="ACFOCN_002043"
     CDS             complement(48..827)
                     /locus_tag="ACFOCN_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HFC6971119.1"
                     /translation="MKLVRPQKISDQVLSVLEERIAEGVYAEGGKIPPERVLAEEFGV
                     SRPSVRSALNVLVARQVLEARQGDGYYVSVKPQQDFLQSWQELLGKHSNWEQDVFDFS
                     CHIEGCMAALAAERRTDADLKRIGFWLEKFEEACESGNLEHQSEADVSFHQTIADAAH
                     NLLFSHLSGGLLKMLYRQTRSSLIYLNQEEDPRPKLMAQHRVLYEAISNRRPGEASEA
                     AKAHLNYVASSIMKDREYQSRNRHADTLAQNDLKRVQDWEV"
BASE COUNT          200 a          289 c          172 g          206 t
ORIGIN      
        1 ttcactatac cgatacatcc gaatatgcca gaccgtctaa acggtattca tacctcccaa
       61 tcctgcacgc gcttcaaatc gttttgcgcc aaagtatccg cgtggcggtt acggctctga
      121 tattccctgt ctttcatgat gctgcttgcc acataattca aatgtgcctt tgccgcctcc
      181 gaagcctcgc ccggccgacg gttcgatatc gcctcataca gcacgcggtg ctgcgccatc
      241 agtttcggac gcggatcttc ttcctgattc agataaataa ggctgctgcg cgtctgccgg
      301 tacagcattt tcaacaaacc gcccgacaaa tggctgaaca acaaattgtg cgccgcatcc
      361 gcaatcgtct gatggaagct gacatcggct tcgctctgat gttccagatt gccgctttcg
      421 cacgcctcct caaacttttc aagccaaaac ccaatccgct tcaaatcggc atccgtccgg
      481 cgttctgccg ccaatgccgc catacagccc tcgatgtggc agctgaaatc aaaaacatcc
      541 tgttcccaat tggaatgctt gcccaaaagc tcctgccaac tttgcaaaaa atcctgctgc
      601 ggcttgaccg aaacataata accgtctccc tgcctcgctt ccaaaacctg acgggcgacc
      661 aaaacattca atgccgacct gaccgacggg cgggacacgc cgaactcttc cgccaaaacg
      721 cgttcgggcg gaatcttgcc cccttccgcg taaacccctt ccgcaatgcg ctcctccaat
      781 accgacaata cctgatcgct gattttctga ggccttacca gtttcatcac tcctccttta
      841 taaagattcc ctgccgaacc cttccga
//
LOCUS       DAXIFD010000269          821 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.269, whole genome shotgun sequence.
ACCESSION   DAXIFD010000269 DAXIFD010000000
VERSION     DAXIFD010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.269"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            361..507
                     /locus_tag="ACFOCN_002044"
     CDS             361..507
                     /locus_tag="ACFOCN_002044"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971120.1"
                     /translation="MMRNGGNLSGITENERKSGQGGEAADSTDRTEPIHLVLEHLRES
                     FSLS"
     gene            complement(640..>821)
                     /locus_tag="ACFOCN_002045"
     CDS             complement(640..>821)
                     /locus_tag="ACFOCN_002045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971121.1"
                     /translation="LVFCPCGNDEILSFRNLSEKTETAPPSFPRRRESRISMPQEFIG
                     KNQNPSAVIPAKVGI"
BASE COUNT          237 a          199 c          209 g          176 t
ORIGIN      
        1 gactgaaacc gaacagactg gattcccgcc tgcgcgggaa tgacgaagcc tgtgcgggaa
       61 tgacgaggcc tgcgcgggaa tgacgaaaag caacctttcc gcgtccttcc cgcgaaagcg
      121 ggaatctaga acccctaacg cggcaggaat ctatcggaaa aaaccgaaac cgaacagact
      181 ggattcccgc ctgcgcggga atgacgaagc ctgcgcggga atgacgaaaa gcaacctttc
      241 cgcgtccttc ccgcaaaagt gggaatctag gaactcaaag ctgcaagaat ttatcagaaa
      301 caactggaac tcaaaaaaac tagattcccg cctgcgcggg aatgacgaag ggttaaagaa
      361 atgatgagaa acggcggtaa tttatcggga ataaccgaaa acgaacggaa atcaggacaa
      421 ggcggcgaag ccgcagacag tacggatagg acggaaccga ttcacttggt gcttgagcac
      481 cttagagaat cgttctcttt gagctaaggc gaggcaacga cgtactggtt tttgttcatc
      541 cactataaca gcaaccctgt cgccgtcatt cccgcgaaag cgggaatcca gtccgttcag
      601 tttcggtcat ttccgataaa ttcctgctgc ttttcatttc tagattccca cttttgcggg
      661 aatgacggcg gaagggtttt ggttttttcc gataaattct tgaggcattg aaattctaga
      721 ttcccgcctg cgcgggaatg acggcggagc ggtttctgtt ttttccgata aattcctaaa
      781 acttaaaatt tcatcattcc cgcaaggaca gaaaaccaaa a
//
LOCUS       DAXIFD010000270          815 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.270, whole genome shotgun sequence.
ACCESSION   DAXIFD010000270 DAXIFD010000000
VERSION     DAXIFD010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.270"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..>815)
                     /locus_tag="ACFOCN_002046"
     CDS             complement(<1..>815)
                     /locus_tag="ACFOCN_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971122.1"
                     /translation="NAIQAADSFLSSIGRDNKITNTASLLASLDNIFLNLRNVSRDIR
                     ETGKFKPNDIQQAIGDIFIAAGDGLQYIKQQTEAMAQSKFLPTKLKTGLNDVLNSRML
                     KSSTVLQHELNYLGFKIKDYGNERLGESIMNIDDFTPSKIANFFADPDTYSNVLEEVS
                     RFIYSLVPDDANPWKGGEDYIGRGISEWGELLEKWYKQDFLPYLKKEWDQFPKFEDWL
                     PEFPEWAREWLKLDPKRSGKYHVYDPLALDLDGDGIETVAAKGFAGALFDHRN"
BASE COUNT          233 a          162 c          135 g          285 t
ORIGIN      
        1 tgattgcggt ggtcgaacaa tgcacctgca aagcctttgg cagcaacggt ttctataccg
       61 tcgccgtcta gatctagggc gagggggtcg tagacatgat atttgcctga acgtttggga
      121 tctaatttca accactctct tgcccattca gggaattcag gcagccaatc ttcaaatttc
      181 ggaaattggt cccattcttt tttaagataa gggagaaaat cttgtttata ccatttttcc
      241 agtaactctc cccattcact tatccctcgt ccaatataat cttcgccccc tttccaaggg
      301 tttgcatcat caggaactaa ggaatatata aacctagata cttcttctaa tacattgctg
      361 tatgtatcag gatccgcaaa aaagtttgct atcttacttg gtgtaaaatc atctatattc
      421 attatagatt cgccaagcct ctcgtttcca taatccttta ttttaaatcc caaataattc
      481 aattcatgct gtaaaacagt agaggatttt agcattctag aattaaggac atcatttaaa
      541 ccagttttta atttagttgg taagaatttg ctttgagcca tcgcctctgt ttgttgtttt
      601 atatattgta atccatcacc agcagcaatg aatatatcac caattgcttg ttgaatatca
      661 ttaggtttaa attttcctgt ttctcgtata tctcgagata catttcttaa atttaaaaaa
      721 atgttatcga gggatgcaag taaagaagca gtatttgtta ttttgttatc tcttccaata
      781 ctgcttaaaa agctatctgc agcttggata gcatt
//
LOCUS       DAXIFD010000271          805 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.271, whole genome shotgun sequence.
ACCESSION   DAXIFD010000271 DAXIFD010000000
VERSION     DAXIFD010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.271"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(156..362)
                     /locus_tag="ACFOCN_002047"
     CDS             complement(156..362)
                     /locus_tag="ACFOCN_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPCC family cysteine-rich protein"
                     /protein_id="HFC6971123.1"
                     /translation="MMENSKKTWEIDGEIWLHCPVCGTEVMDYDICDVCQWQNTGETN
                     IDGGPNEMTLAEAKEAYAKDLPIR"
     gene            complement(328..>805)
                     /gene="mafB"
                     /locus_tag="ACFOCN_002048"
     CDS             complement(328..>805)
                     /gene="mafB"
                     /locus_tag="ACFOCN_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6971124.1"
                     /translation="PTARPMQTLDGEMAGGNKPPKPSTQQHPTHSDNNIGLPASYVKP
                     DTSISPTGTIQDRIRWTKSKFPTEKSLNGHFKAHGKEFGDITIEDYQKMASDLLSKQT
                     SDKILGYQTEHRRVRYDINNNIYVLANPKTFKIKTMFKPNLGKKYYDGEFKKDMGN"
BASE COUNT          207 a          152 c          145 g          301 t
ORIGIN      
        1 atatgatttt aaaaaatcaa caatttttat ttttcctaaa accaaatctt cgactaactg
       61 ggttgcataa ataatatcat ttatgatttt aacaggtaaa ttatttgata ggtaaccatg
      121 ggattccgtc atcattgatt tctctaggtg cttatttatc tgattggtaa gtcttttgcg
      181 taagcttctt tcgcctccgc aagtgtcatt tcattagggc caccatctat attagtttct
      241 cctgtatttt gccactgaca aacgtcacag atatcatagt ccataacttc agttccgcaa
      301 acaggacaat gtagccatat ttctccgtca atttcccatg tcttttttga attctccatc
      361 ataatacttc tttcctaagt ttggtttaaa cattgttttg attttgaatg tttttggatt
      421 ggccaaaaca tagatattgt tattgatatc atagcgcact cgtctatgtt ccgtctgata
      481 acctaatatc ttgtccgatg tctgttttga taacaaatca gacgccattt tttggtagtc
      541 ttcaatggtt atatcgccaa attcttttcc atgagctttg aaatgtccat ttaaagattt
      601 ctcagtagga aacttggact ttgtccatct gatgcggtct tgaattgttc ctgtcggaga
      661 aatagatgta tcaggtttaa catatgaggc aggtaagccg atattgttat cagagtgtgt
      721 agggtgttgc tgcgtacttg gttttggtgg cttattccca cctgccatct ccccatctaa
      781 agtctgcata gggcgggcag taggt
//
LOCUS       DAXIFD010000272          802 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.272, whole genome shotgun sequence.
ACCESSION   DAXIFD010000272 DAXIFD010000000
VERSION     DAXIFD010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.272"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            41..505
                     /locus_tag="ACFOCN_002049"
     CDS             41..505
                     /locus_tag="ACFOCN_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HFC6971125.1"
                     /translation="MKELDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRL
                     EREHYISGYHAHLNPHLLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVS
                     GEYDYLIKVRLPDMSAYRDMLGNILLQLPAASESRSYVVMEEVKENPVLDLD"
BASE COUNT          266 a          159 c          171 g          206 t
ORIGIN      
        1 tctatttgtt aaaatcaata ataaatacaa ggcaatccaa atgaaagaac tagataaaat
       61 cgatttccgc attcttaaga tcctccaaca gaatgcccgc atcccgatga cggagcttgc
      121 cgagaaggta ggcttgtcca ccacgcccgt tacagagagg gtgcgccgtt tggagcggga
      181 acattatatt tccggctatc acgcccacct caatccccat ctgttgggca aaccgctatt
      241 ggtttttgtc gagctgaagc tgcaatccaa atcgggcaat attttcgaag atttcaaaaa
      301 agaagtgctg aaaattccgc aaattatgga atgccacttg gtgtcgggcg aatacgacta
      361 tctgattaaa gtacgtttgc ccgatatgtc tgcctatcgg gatatgctag gcaatatcct
      421 attgcaactg cctgccgctt cggagagtag gagttatgtt gtgatggagg aggtcaaaga
      481 aaatccggtt ttggatttgg attgaatatt tcagaccggg tatgcggttt gacacctaaa
      541 tgaaacataa caacatcacg cacagaggct tgttgcttca gataaaaaaa tgcacacatt
      601 caatagaatg tgtgccaagt ctacaaagga gaaatagagg agaaactatt aactgactac
      661 tcgaaccagc taacggaacg aattatgcag cttttccggt caaaaagcaa gcgtttttct
      721 tgttaaattt cttaaagaat ggaatttcaa acaataaaag taattaaatt tcaaaaaaag
      781 cggagataaa aaaatgcaca ca
//
LOCUS       DAXIFD010000273          791 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.273, whole genome shotgun sequence.
ACCESSION   DAXIFD010000273 DAXIFD010000000
VERSION     DAXIFD010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.273"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..99
                     /locus_tag="ACFOCN_002050"
     CDS             <1..99
                     /locus_tag="ACFOCN_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6971126.1"
                     /translation="REKQQLTQQELVGYHQQVEQLVQSFVNNSNKK"
     gene            116..>791
                     /locus_tag="ACFOCN_002051"
     CDS             116..>791
                     /locus_tag="ACFOCN_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971127.1"
                     /translation="MNEGEVVLTPEQIQTLRGYASRGDTYGGWRYLANLGDRYADNAA
                     AIVGKDTNLNGLNLWMKKGVENLWDDTVGKKTRLEKFDRVALQHFSQYVDLINKNNGR
                     LPNTSEIERSYYKAVTYHGVSSSAAIDLVINRSLPDMADGYWALGLGIEAERIHNEQA
                     VNNPNGSERDNRKQLISALDKGFDGSFKEKHFTFLQSVMMDLTKLGVEYTIDGWQKIG
                     GWGNGII"
BASE COUNT          262 a          108 c          191 g          230 t
ORIGIN      
        1 cgggaaaagc agcagctcac acagcaggag ttggtaggtt atcaccaaca agtagagcaa
       61 ttggtacaga gttttgtaaa caattcaaat aaaaaataat ttaaaggatc ttattatgaa
      121 tgagggtgaa gttgttttaa caccagaaca aatccaaacc ttacgtggtt atgcttcccg
      181 tggcgatacc tatggcggtt ggcgttattt ggctaatttg ggcgaccgtt atgcggataa
      241 tgctgctgca attgtcggta aggatacaaa cttaaatggt ttgaatttat ggatgaaaaa
      301 aggggtggaa aacctatggg atgatacggt cggtaaaaag acccgtttag agaaatttga
      361 tcgggttgca ttgcaacatt tcagccaata tgtagatcta attaataaaa ataatggtag
      421 attacctaac actagtgaaa ttgagagaag ttactataaa gccgttacct atcatggcgt
      481 ttcttctagt gcagctattg atttagttat taatcgttca cttccggata tggcggatgg
      541 ttattgggca ttaggtttgg ggatagaagc cgaacgtatc cacaatgagc aagcagtaaa
      601 taatccgaac ggtagcgaaa gggataatag aaagcagtta atatctgctt tagataaagg
      661 atttgatgga tcttttaaag agaagcattt tactttttta caatctgtga tgatggatct
      721 aacaaagtta ggtgttgaat atacaataga tggttggcaa aaaattggag gttggggtaa
      781 tgggataatc a
//
LOCUS       DAXIFD010000274          772 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.274, whole genome shotgun sequence.
ACCESSION   DAXIFD010000274 DAXIFD010000000
VERSION     DAXIFD010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.274"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            88..606
                     /locus_tag="ACFOCN_002052"
     CDS             88..606
                     /locus_tag="ACFOCN_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971128.1"
                     /translation="MKQMLLAVGVVAVLAGCGKDAGGYEGYWREKSDKKEGVIAVKKE
                     KGNYFLNKINVFTGKEESLLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYVKT
                     DAAMKDKIIAHQKKCGQTAQAYLDARKALPSNQTYQQRQAAIEQLKRRFEAEFDELEK
                     EIKCNGKPTLLL"
BASE COUNT          227 a          157 c          221 g          167 t
ORIGIN      
        1 caactatagt ttttgcaaat caatattgac aagctgaaaa aaaaaaacaa tatactcgct
       61 cggtcttaat gttaacggag tatggaaatg aaacaaatgc ttttagccgt cggcgtggtg
      121 gcggtgttgg cgggctgcgg caaggatgcc ggcggttacg agggttattg gcgcgaaaag
      181 tcggacaaaa aagagggcgt gattgccgtc aaaaaagaaa aaggcaatta cttccttaat
      241 aaaatcaacg tatttacagg caaggaggag tctttgcttt tgtctgaaaa agacggcgcg
      301 ctttcgataa acacggggat aggggaaatc ccgatcaaac tttccgacga cgggaaagag
      361 ctgtatgtcg aacgcaggca gtatgtcaaa accgatgcgg cgatgaagga caaaatcatc
      421 gcccatcaga aaaagtgcgg acaaacggca caggcatacc tcgacgcgcg aaaggcgttg
      481 ccgtcaaacc aaacgtatca gcagcgtcag gcggcgatcg agcagttgaa acggcggttt
      541 gaagccgagt ttgacgaatt ggaaaaagaa atcaaatgca acggcaaacc gacattgttg
      601 ctttagcaga ggacaaccgg gaggatgccg ccgtccgaat cggacgtgcg gttttcgtac
      661 cggtacgggc gggcaggaat gtccgctttt tttgttcgga cgcgtttgaa tacccgtttg
      721 attccgtccg tttgcaaggg gtatttccgt tcgggcggaa attatagtgg at
//
LOCUS       DAXIFD010000275          739 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.275, whole genome shotgun sequence.
ACCESSION   DAXIFD010000275 DAXIFD010000000
VERSION     DAXIFD010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.275"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            319..630
                     /locus_tag="ACFOCN_002053"
     CDS             319..630
                     /locus_tag="ACFOCN_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein"
                     /protein_id="HFC6971129.1"
                     /translation="MLAILLSAILGLVSTTAAAGTSEPAHRDTKHIRKANKQMLHPEC
                     RKYLERRAAWYRSQGNVQELRENKKARKAFRSLPYAEQKIQCRAAYEAFDDFDGGSFR
                     R"
BASE COUNT          197 a          186 c          167 g          189 t
ORIGIN      
        1 tttgcctttt gaccggctcc ggctacaagg cggtgaaata aggattttcc gacgaaaaag
       61 gaaagcttcc tgttttctgc ccctgcaaat tgttaaattt tgcaaagtat gattttgccg
      121 cgccgccgcc gacaaattcc attttcttac cgattggaat ttattattga gattaatgtg
      181 ttatttgaat ctgcatatca aacggcaagt tttgtcggct gaatgagtct gaaactgccg
      241 acaatttgcc cgttccatcc ttccatccta tactggaaag aatgacaaac tgaaaggatc
      301 gtcatgtctg tcaaaaagat gcttgccata ctgttgtctg caatattggg actggtatcg
      361 acaactgccg ctgccggtac gtcagaaccc gcccaccgcg ataccaaaca tatccgcaag
      421 gcaaacaagc agatgctgca ccccgaatgc aggaaatatt tggaacgccg tgccgcgtgg
      481 taccgatcgc aaggcaacgt gcaggaattg cgcgaaaaca aaaaggcgcg caaagcattc
      541 cgctccctgc cttatgcgga acagaaaatc caatgccggg cggcttatga ggctttcgat
      601 gatttcgacg gcggcagttt ccgccgttaa tcccatataa aatatgccgt ctgaacacag
      661 gttcagacgg cattttccat agatacaaca aactatcctt acggcatttc gtttgaggtg
      721 ctcccgttgc cgcagcctt
//
LOCUS       DAXIFD010000276          726 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.276, whole genome shotgun sequence.
ACCESSION   DAXIFD010000276 DAXIFD010000000
VERSION     DAXIFD010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.276"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..172)
                     /locus_tag="ACFOCN_002054"
                     /pseudo
     CDS             complement(1..172)
                     /locus_tag="ACFOCN_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573867.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(147..278)
                     /locus_tag="ACFOCN_002055"
     CDS             complement(147..278)
                     /locus_tag="ACFOCN_002055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971130.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQRYDHLCR"
     gene            complement(399..710)
                     /gene="rpsJ"
                     /locus_tag="ACFOCN_002056"
     CDS             complement(399..710)
                     /gene="rpsJ"
                     /locus_tag="ACFOCN_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HFC6971131.1"
                     /translation="MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPT
                     KIERFNILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLSAGVDVEIKV
                     Q"
BASE COUNT          172 a          158 c          182 g          214 t
ORIGIN      
        1 cgaccacata acggggcttc gacaaatatc ggttgcgttt ggtttgcgct tccgacagcg
       61 gacggttgcg gcaggctttg cgcataatgc cgtccagcaa ctgatgttct ttcagatgtt
      121 gccggttttc cgcactgtca tagcctttat cggcatagat ggtcgtacct ttgctcgatc
      181 ggctgccaat caatcacttg atccaacttc aatagcggga aacggtcgat gtgtttggca
      241 atcatggctt gtgcggtttg ttgaaagaag gtgctcatga gaaatcccct aaatgtcttg
      301 gtgggaattt aggagatttt ggggaatttt gcaaaggtct cggcataaca taaaaaatcc
      361 ccaagcattg attgcttggg gattttcaat agtccgaatt attggacttt gatttctaca
      421 tcaacaccgg ccgacaaatc cagcttcatc agcgcatcgg tagttttatc ggtccaatcc
      481 acgatgtcca tcaggcgcaa gtgggtgcgg atttccaatt gttcacggga agttttgttc
      541 acgtgcggag aacgcaaaat gttgaaacgc tcgattttgg tcggcaaagg aatcgggcct
      601 tttacaacgg caccggtacg ttttgcagtt tcaacgattt cttgtgcaga acggtcaatc
      661 agggcgtaat cataagcttt caggcggata cggatttttt ggtttgccat ttatcaatat
      721 ccttca
//
LOCUS       DAXIFD010000277          726 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.277, whole genome shotgun sequence.
ACCESSION   DAXIFD010000277 DAXIFD010000000
VERSION     DAXIFD010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.277"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(23..715)
                     /locus_tag="ACFOCN_002057"
     CDS             complement(23..715)
                     /locus_tag="ACFOCN_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6971132.1"
                     /translation="MFHAFILRIYTMIKNISKLINHAVLIGFIPNIVFAYPIFAENPA
                     SYQNIHVRSWKARRDSGIVKQDLDFSCGAASIATLLNNFYGRHYSEAEILDKMDKTQM
                     RASFDDMQRIMPELGFEAQGYALPFEQLVQLKIPVIVYLKYRKNNHFSVLNGINGETV
                     LLADPSLGHVSMSKSQFLNAWKTRDGEMEGKILAIVPKNTDFVRNQMFFNKNPVRQTR
                     FTVEQIQMRQKR"
BASE COUNT          230 a          134 c          131 g          231 t
ORIGIN      
        1 taaatgggca aaaatcggtt tattatcgtt tttgccgcat ttggatttgt tctaccgtaa
       61 aacgtgtttg acgaacggga ttcttattaa aaaacatctg atttctaaca aaatcagtat
      121 tttttggcac gatggctaaa atttttcctt ccatttcgcc atcacgtgtt ttccatgcgt
      181 tcaagaattg tgatttgctc attgagacgt gccccagcga tggatcagcc agcaaaacag
      241 tttctccgtt aataccgttc aataccgaaa aatggttgtt tttacggtat tttaaataca
      301 caattacagg aatttttagt tgtaccaact gttcaaatgg caaagcataa ccttgtgctt
      361 caaaacccag ttcgggcatt atgcgttgca tatcatcaaa agaagcacgc atttgggttt
      421 tatccatttt gtccaagatt tccgcttcag aataatgtct gccataaaaa ttattcagta
      481 acgtggcaat cgaagccgcg ccgcaagaaa aatccaaatc ttgttttact atgccggaat
      541 ctcgccgtgc tttccaactc cgtacatgga tgttttggta agaagcgggg ttttcagcaa
      601 atatagggta agcaaaaaca atatttggga taaagccaat taaaaccgca tggtttatta
      661 atttagaaat attttttatc atagtatata tgcgtagaat aaacgcatga aacataaaaa
      721 aataaa
//
LOCUS       DAXIFD010000278          725 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.278, whole genome shotgun sequence.
ACCESSION   DAXIFD010000278 DAXIFD010000000
VERSION     DAXIFD010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.278"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(128..>725)
                     /locus_tag="ACFOCN_002058"
     CDS             complement(128..>725)
                     /locus_tag="ACFOCN_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HFC6971133.1"
                     /translation="LSIGQIVKVKPAGYAAPKTSAVESRPAVPAAVQTPVKPAAQPPV
                     QSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGV
                     DIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQV
                     KRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIAF"
BASE COUNT          161 a          206 c          196 g          162 t
ORIGIN      
        1 caaacacagt caaacaaatt tatatgcccc atcccttccg aataatttga aaacacagcc
       61 gccaaaaaca aaaatgccgt ctgaaaacct ttcagacggc atttccaatt tgatttcagg
      121 cagaaagtca gaacgcgata tagctgttcg ggttaaccgg tttgccgttt tgccgcacct
      181 cgaaatgaag ctgcgttctg gaagcgtcgg tattgcccat caaagcgacc tgctgcccgc
      241 gtttgacctg ctggccttcg ccgaccagca atttttggtt gtgcccgtat gcggtcagga
      301 aggaagaatt atgctggatg atgaccagat tgccgtatcc cctcaaaccg gaacctgcat
      361 aaaccacttt gccgtcagcc gccgccaaaa cgggttgtcc cgcatttcct gcaatatcga
      421 cacccttgtt gttgccgccg aaatcggcaa ccactttacc ttgcgtcgga cgctgccaaa
      481 caatgccgcc gaccgaacgc gttccggaag gcgaagcggc aggagattgc ggggcgggcg
      541 cgggaaccgc tttattttcc gcagcgggcg cggcaggttg cggcgcggac tgcacaggcg
      601 gttgcgcggc gggtttcaca ggggtttgca cggcagccgg tacggcgggc ctgctttcta
      661 cggctgaggt tttcggtgcg gcatatcctg ccggtttgac tttaacaatc tgaccgatgc
      721 tcaac
//
LOCUS       DAXIFD010000279          719 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.279, whole genome shotgun sequence.
ACCESSION   DAXIFD010000279 DAXIFD010000000
VERSION     DAXIFD010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.279"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..532
                     /locus_tag="ACFOCN_002059"
     CDS             <1..532
                     /locus_tag="ACFOCN_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HFC6971134.1"
                     /translation="DITFSEDVGECPLHSDSSFSENPESYLVMYVVKSANDGGNSLFL
                     SSSDIVNQLSKTETGKKHLKTLTGNLYPFKAPASFDKKQGVRWGNILSVNTQMIRFRS
                     DCIYKGIEENRNKVSKEMVLALDYLVKIIKNASDIQEFSAQDDGLIIIDNVNGLHAGT
                     DYTDKNRHYIRARITV"
     gene            542..>719
                     /locus_tag="ACFOCN_002060"
     CDS             542..>719
                     /locus_tag="ACFOCN_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6971135.1"
                     /translation="MQEIMQSIVFVAAAILHGITGMGFPMLGTTALAFNMPLSKVVAL
                     VALPSLLMSLLVLCS"
BASE COUNT          243 a          105 c          145 g          226 t
ORIGIN      
        1 tgatataact ttctcggaag atgttggaga atgtccactt catagtgatt catcttttag
       61 tgaaaacccg gaaagttatt tggttatgta tgtagtaaaa tcagccaatg atggaggtaa
      121 ttccctattt ttaagttcat cagatattgt caatcagtta tctaaaacag aaaccggtaa
      181 aaaacactta aaaacattaa cgggcaattt atatccattt aaagcaccag catcatttga
      241 taaaaaacaa ggtgtgagat ggggtaatat cttatcggtc aatactcaaa tgattagatt
      301 tagaagtgat tgtatctata aaggtattga agaaaataga aataaagtat caaaggaaat
      361 ggtacttgca cttgattatc ttgtaaagat tataaaaaat gcgagtgata ttcaagaatt
      421 ttctgcacaa gatgatggtt tgattattat tgacaatgtc aatggcttgc atgccggaac
      481 tgattatacg gataaaaaca ggcattatat tagagcaaga attactgtat aaaggacggt
      541 tatgcaagaa ataatgcaat ctatcgtttt tgttgctgcc gcaatactgc acggaattac
      601 aggcatggga tttccgatgc tcggtacaac cgcattggct tttaacatgc cattgtctaa
      661 ggttgttgcc ttggtggcat taccaagcct gttaatgagc ttgttggttc tatgcagca
//
LOCUS       DAXIFD010000280          716 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.280, whole genome shotgun sequence.
ACCESSION   DAXIFD010000280 DAXIFD010000000
VERSION     DAXIFD010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.280"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
BASE COUNT          150 a          188 c          183 g          195 t
ORIGIN      
        1 caagatggcg gcataaagcg cggtatggcg gaaaacccgc ctttttaaag ttttattcat
       61 cgtatttcct tttcggtcaa accccccgcc cttcgggcat ccgtccttcg gggcggcagg
      121 atcaggcttt gtccgggagg ggtgcaagcc cttccgaatc agggcggcgc cttatgtgcc
      181 gccctgcgtg ttggaacata tgtttcgcag ggtgtttcgt gggtttcgca gggcgggctg
      241 tagggcgggc tttagcccac tctatggcgc accttgcgaa tctgccttat aaaaataccc
      301 gaaccgtcat tcccgcgcag gcgggaatct aggatgcgga atctagagaa accgtttatc
      361 cgataagttt ccgttccgac aggtctggat tcccgcctgc gcgggaatga cggacgggaa
      421 cggcgcacgg gcattgccgg aatcttttgt gtttccatta tcatactctt tttaatgcgc
      481 tattccaaga atatgatgcc ctccggcggc atcccaccct acggcttgct ataaaaatac
      541 ctaaaccgtc attcccgcaa acctacattc cgtcattccc acgaaagtgg gaatccagaa
      601 tctcggactt tcagataatc tttgaatatt gctgttgttc taaggtctag attcccgcct
      661 acgcgggaat gacgggtctt ttataatctt tgaatattgc tgttgttcta aggtct
//
LOCUS       DAXIFD010000281          712 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.281, whole genome shotgun sequence.
ACCESSION   DAXIFD010000281 DAXIFD010000000
VERSION     DAXIFD010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.281"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..185)
                     /locus_tag="ACFOCN_002061"
     CDS             complement(<1..185)
                     /locus_tag="ACFOCN_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971136.1"
                     /translation="MFLDDVNVFLDDLNTNPITDEWYMSNFADKHIKILESYEAFDIL
                     KQFVDYMIEEYDEKSEY"
     gene            complement(188..472)
                     /locus_tag="ACFOCN_002062"
     CDS             complement(188..472)
                     /locus_tag="ACFOCN_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971137.1"
                     /translation="MAGGNKSLKIGTQSVEKSTGRTIPNNLKEQLAMEEVKANPQGKT
                     PARIPPMSDTKNGWLAKDGWVKRVQNVNKIEIHYIENTRTGEKTDFKFKD"
     gene            complement(455..712)
                     /locus_tag="ACFOCN_002063"
                     /pseudo
     CDS             complement(455..712)
                     /locus_tag="ACFOCN_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
BASE COUNT          179 a          142 c          125 g          266 t
ORIGIN      
        1 tcatattctg atttttcatc atattcttca atcatgtaat caacaaattg ttttagaata
       61 tcaaaggctt cgtaactttc caaaatttta atatgtttat cggcaaaatt ggacatatac
      121 cattcgtcag tgattggatt agtatttaaa tcatctaaaa aaacatttac atcatctaaa
      181 aacatgacta atccttaaac ttaaaatctg ttttttcacc ggttcttgtg ttttcaatgt
      241 aatgtatttc aattttgttt acgttttgaa cacgcttaac ccaaccgtct tttgctaacc
      301 aaccattttt agtatcggac ataggaggta ttctcgcagg agttttgccc tgtgggtttg
      361 ccttaacttc ttccattgct aattgttcct ttaaattatt aggtattgta cgaccggttg
      421 atttttcaac agattgtgtc cctattttta atgatttgtt tcccccagcc atttccccgt
      481 ctatagtctg catatggcga acagcaggtt ttttatagcc ggtattttta acccaatccc
      541 acttggtcgg gttaaggttt acttttttac cgcctcaaac cgtagttgcg gcctctgcta
      601 tggcaagggc ggtttgggca gtagctgtaa tgttcggatg ggcatcagcc cattgtttgg
      661 cagagttgat accgtctttt accgcaaaag cactgtcttg taatgcggtt gc
//
LOCUS       DAXIFD010000282          708 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.282, whole genome shotgun sequence.
ACCESSION   DAXIFD010000282 DAXIFD010000000
VERSION     DAXIFD010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.282"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
BASE COUNT          181 a          180 c          171 g          176 t
ORIGIN      
        1 agttttttga gtttcagtca tttccgataa attgccttag cattgaatgt ctggattccc
       61 gcctgcgcgg gaatgacgaa cctatccgta cggaaacctg caccacgtca ttcccacgaa
      121 agtgggaatc cagctttttg agtttcagtc attttcaata aattgcctta gcattgaatg
      181 tctagattcc cgcctgcggg ggaatgacgg attttaggtt ggggtcattt attgggaaaa
      241 gcagaaaccg ctccgccgtc attcccagga aagtgggaat ctagaaattt aatgttgcgg
      301 cactagccaa aaaaaccgaa accgaacgga ctagattccc gcctgcgcgg gaatgacgaa
      361 tccatccgta cggaaacctg caccacgtca ttcccacgaa cctgcatccc gtcattccca
      421 cgaaagtggg aatccagttt tttgagtttc agtcattccc gataaagtgc cttagcattg
      481 aatgtctaga ttcccgcctg cgcgggaatg acggatttta gtttgggggg catttattgg
      541 aaaaagcaga aaccgctccg ccgtcattcc cacgaaagtg ggaatccagg atgcagggtt
      601 ggggaaaccg tgttatccga taagtttccg caccgacagg tctagattcc cgcctgcgcg
      661 ggaatgacga atccatccgt acggaaacct gcatcccgtc attcccac
//
LOCUS       DAXIFD010000283          705 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.283, whole genome shotgun sequence.
ACCESSION   DAXIFD010000283 DAXIFD010000000
VERSION     DAXIFD010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.283"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..203
                     /locus_tag="ACFOCN_002064"
     CDS             <1..203
                     /locus_tag="ACFOCN_002064"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971138.1"
                     /translation="MQLICADWTGIGNFMKTFEKTWSAQYRDMEISVRNFWNLERTGA
                     EVYINGRRVYHNEAEMASASLR"
     gene            371..705
                     /locus_tag="ACFOCN_002065"
                     /pseudo
     CDS             371..705
                     /locus_tag="ACFOCN_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359781.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          230 a           97 c          151 g          227 t
ORIGIN      
        1 taatgcaatt gatatgtgcc gattggacag gtataggaaa ttttatgaaa accttcgaaa
       61 aaacatggtc tgcacaatat cgggatatgg aaatttcagt acggaatttt tggaatttgg
      121 agcggacagg ggcggaagtc tatatcaacg gaaggcgggt ttatcataac gaagccgaaa
      181 tggcgtctgc ttctttgcgt tagctaatgg gggaatacct ggaatttgaa gaaagcggta
      241 cgaaaattac cgttgaaatc ggcagcgcgt ggcattttaa tgaaactata agaaatatta
      301 atacacattt aagaggtacg aaacttccag gttctaactg gagagttcaa gataaggggc
      361 attttcatct ttggaaaaga taatagattc taaggtaagg gagactaatt ttaatcaggc
      421 atggcgtgtt atacgcgcca tgcaaataga taatatatcc gatgaacagg ttgtgattgt
      481 cagaatgtct tgttatcttc agaatgtctt gttatcttaa gaaagatgaa atttttaaga
      541 atatagaaag atatggatat cagtcatcag atattaagaa aattagtcct ccttttccat
      601 taaatatttt acctgttccc aaaccttatt atttttatct ttatgatacc catttgaatc
      661 aaatttatga tttggcttgg tcatgtaatg attttttaat gtttg
//
LOCUS       DAXIFD010000284          652 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.284, whole genome shotgun sequence.
ACCESSION   DAXIFD010000284 DAXIFD010000000
VERSION     DAXIFD010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.284"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(51..536)
                     /locus_tag="ACFOCN_002066"
     CDS             complement(51..536)
                     /locus_tag="ACFOCN_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HFC6971139.1"
                     /translation="MRFFGIGFLVLLFLEIMSIVWVADWLGGGWTLFLMAAGFAAGVL
                     MLRHTGLSGLLLAGAAMRSGGRVSVYQMLWPIRYTVAAVCLMSPGFVSSVLAVLLLLP
                     FKGGAVLQAGGAENFFNMNQSGRKEGFSRDDDIIEGEYTVEEPYGGNRSRNAIEHKKD
                     E"
BASE COUNT          195 a          211 c          116 g          130 t
ORIGIN      
        1 tcaaaccgga aaaatgccgt ctgaatcttc agacggcatt ccattcatat ttattcgtct
       61 tttttgtgtt cgatggcgtt tcgggaacga ttgccgccgt aaggctcttc aaccgtatat
      121 tccccctcga taatatcgtc atcgcgggaa aagccctctt ttctgcccga ttggttcatg
      181 ttgaaaaaat tttccgcacc tcctgcctgc aacactgcac ctcccttaaa cggcagcagc
      241 agcaataccg ccaacaccga ggatacgaat cccggactca tcagacacac cgccgccacc
      301 gtataacgga taggccacaa catctgataa acggataccc tcccgccgct tctcattgcc
      361 gcgcccgcca ataaaagacc ggacagcccc gtatgcctga gcatcagcac accggcggca
      421 aaacctgccg ccatcaaaaa caacgtccag ccgccgccca accaatcggc aacccacaca
      481 atcgacataa tctccaaaaa cagcagcacc aaaaaaccga taccgaaaaa tctcattgac
      541 cgtcatcctt atatttaagt aaacagcaaa ccgcccgaac aagactccaa gcgacctgcc
      601 tgtaaatgat tacaaaacca tgtgcttcaa gccgaaacaa tgtgaaatca cg
//
LOCUS       DAXIFD010000285          641 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.285, whole genome shotgun sequence.
ACCESSION   DAXIFD010000285 DAXIFD010000000
VERSION     DAXIFD010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.285"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            44..>641
                     /locus_tag="ACFOCN_002067"
     CDS             44..>641
                     /locus_tag="ACFOCN_002067"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971140.1"
                     /translation="MAKYFTILPRSFNNVSLSSAFSRKELDEFQNITFSIEDSNDLAH
                     IWNFELTNPAQNMNFFALVGKRKFPMDAHIQGTQCTIKIAHKKTGNLLSLLLKKRNQL
                     NLSRGYTLIAEDNSYEKYIGAISNKGNFEIIANKKSSLVTINKSTLELHEIPHELHQN
                     KLLIALPNMQTPLKITDDNLIPIQASIKLEKIGNTYYPC"
BASE COUNT          240 a          106 c           95 g          200 t
ORIGIN      
        1 taatcacaat cgcttcttaa aagaatatgc aaaagatgtg gttatggcta aatatttcac
       61 tattcttccg cgcagcttta ataacgtatc attatcgtct gctttcagcc gaaaagaatt
      121 ggacgaattc caaaatatta ctttttctat tgaagattct aatgatttag ctcatatttg
      181 gaatttcgag ctaaccaatc ctgcacaaaa tatgaatttt tttgctttag ttggcaagcg
      241 aaaatttcca atggatgctc atatccaagg aacacagtgt acgattaaga tagctcataa
      301 aaagacaggg aatttattgt cgcttttact aaaaaaacga aatcagttga atttatcaag
      361 gggatatacc ttaattgcag aagataatag ctatgaaaaa tatattggag caatatctaa
      421 taaaggtaac tttgaaatta ttgcaaataa aaagagctca ttagttacta taaacaaaag
      481 taccttagag ttgcatgaga ttccccatga actacatcag aataaattac tgattgcttt
      541 acccaacatg caaacgcctc taaaaattac tgatgataat ttaataccta tccaagcctc
      601 cataaaatta gaaaagattg gaaatactta ttacccatgt t
//
LOCUS       DAXIFD010000286          630 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.286, whole genome shotgun sequence.
ACCESSION   DAXIFD010000286 DAXIFD010000000
VERSION     DAXIFD010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.286"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..>630
                     /locus_tag="ACFOCN_002068"
     CDS             <1..>630
                     /locus_tag="ACFOCN_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971141.1"
                     /translation="KREWTGIFEIVNNNIKQGNEAFKNEINSLVHDMKAAGKEFGDDL
                     NTQWNNLTQAAEIIYNDIVDNTSQGIEKGVKAIKELSEKMKNAASDLADGSAEKAKQV
                     VEDLAQAAKEAYENAKSTAEKAAQAAREFFKGLPSFKDLAEKFRDLFPNPEGWIDDGH
                     QCFAPWVKETKKRNGKYHVYDPLALDLDGDGIETVATKGFSGSLFDHNR"
BASE COUNT          224 a          120 c          141 g          145 t
ORIGIN      
        1 aaaaagagag tggactggaa tatttgagat cgttaataat aacatcaagc aaggaaatga
       61 agcttttaaa aatgaaatca atagcttggt tcatgatatg aaagctgctg gcaaggaatt
      121 tggagatgac ttaaatacac agtggaataa tctcactcag gctgccgaaa taatctataa
      181 tgacatagta gacaatacta gtcaaggaat agaaaaaggt gtcaaagcca ttaaagaatt
      241 gtctgaaaaa atgaaaaatg ctgcttccga tttggctgac ggttcagcag agaaagctaa
      301 acaagtagtg gaagatttgg ctcaagccgc caaagaagca tacgaaaatg ccaaatccac
      361 agccgagaag gctgctcaag cagctcgaga attttttaag ggcttgccca gttttaaaga
      421 tctggccgaa aaatttagag atctgttccc aaatccggaa ggctggatcg atgatggtca
      481 ccaatgtttc gctccttggg ttaaagaaac taaaaaacgc aatggcaaat atcatgtcta
      541 cgaccccctt gccctagatt tggacggcga cggcatagaa accgttgcca ccaaaggctt
      601 ttcaggcagc ctatttgacc acaaccgcga
//
LOCUS       DAXIFD010000287          599 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.287, whole genome shotgun sequence.
ACCESSION   DAXIFD010000287 DAXIFD010000000
VERSION     DAXIFD010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.287"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            172..465
                     /locus_tag="ACFOCN_002069"
     CDS             172..465
                     /locus_tag="ACFOCN_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971142.1"
                     /translation="MKTNDKLNRQIDVLQKQSAAIHNEAYIEMNTLLYRHREVVSVHN
                     RKADYAEKGKERIALFPRGLNGITKLPAAVLLPERPDCFDMKAVWQMFNRIPR"
BASE COUNT          158 a          150 c          160 g          131 t
ORIGIN      
        1 tccattcggc agggaaagcc tgaagaagaa ttttcccgta agatggccgg ctgcctgacc
       61 gacttggaaa actgtttgga aaaatacctc gaacagttcg ggccggtatc ggaaagtatc
      121 gaagcctgta ccgtcaaact gcaggagtaa ccgtcgttct tcaacaggct gatgaaaacc
      181 aacgacaagc tcaataggca gattgacgtg ttgcagaaac agtcggcagc catccacaac
      241 gaagcctata tcgaaatgaa cacgctgctt taccgccacc gcgaagtggt ttccgtccac
      301 aaccgcaagg cggattatgc ggaaaagggc aaagagcgga ttgcgctgtt cccgcgcggc
      361 ttgaacggca tcaccaagct gcctgccgcc gtcctgttgc ccgagcgtcc cgattgtttt
      421 gatatgaagg cagtttggca aatgtttaat agaataccga ggtaggcgta tcggctgccg
      481 gataaaaatg ccgtctgaaa cggaagcgtt cagacggcat tgttgcagtg gaacaaatca
      541 aaatgcaccc cgtcattcct gtctgtacgg tgatagcggc agtgttttcc tgcttcgtt
//
LOCUS       DAXIFD010000288          578 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.288, whole genome shotgun sequence.
ACCESSION   DAXIFD010000288 DAXIFD010000000
VERSION     DAXIFD010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.288"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..426
                     /locus_tag="ACFOCN_002070"
     CDS             <1..426
                     /locus_tag="ACFOCN_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HFC6971143.1"
                     /translation="LMRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNIHTYIN
                     KDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSSLQLFD
                     TKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL"
BASE COUNT          204 a          151 c           83 g          140 t
ORIGIN      
        1 ctaatgcgcc caatcttcct atctttcgtt ttactcccta ttttgataac cgcctgcagc
       61 acaccggaca agtctgcccg atgggaaaat atcggcacaa tctcaaacgg caatattcat
      121 acatatatca ataaagacag cgtgagaaaa aacggaaatc tgatgatttt ccaagataaa
      181 aaagttgtta ccaatctaaa acaagaacgt tttgccaaca cccccgcata caagactgcc
      241 attgccgagt gggaaatcca ctgcaacaac aaaacatacc gcttaagttc gctacagttg
      301 tttgatacaa aaaacacgga aatttccaca caaaactaca cagcctcttc cctccgcccg
      361 atgagcatcc tgtccgggac attaaccgaa aaacaatatg aaaccgtatg cggaaaaaaa
      421 ctctgattgc aacttataca caaacttacc cacaaacctt atcataaaaa tgccgtctga
      481 aatactgaaa tatcagcatt tcagacggca ttttgccatt ccctgaaaat tatccacaaa
      541 gttatccaca ttatttttta aaaccggctt ccatccga
//
LOCUS       DAXIFD010000289          575 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.289, whole genome shotgun sequence.
ACCESSION   DAXIFD010000289 DAXIFD010000000
VERSION     DAXIFD010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.289"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(163..>575)
                     /locus_tag="ACFOCN_002071"
     CDS             complement(163..>575)
                     /locus_tag="ACFOCN_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6971144.1"
                     /translation="VLILILCSSNSYSEPVRLERSQIKFQSSNNLKSSGFKLDSSSKS
                     FAKFIEAANFEHIPTGAKARINAKITASVSRAGVLAGVGKLARLGAKFSTRAVPYVGT
                     ALLAHDVYETFKEDIQARGYQYDPETDKFAKVSG"
BASE COUNT          143 a          143 c          118 g          171 t
ORIGIN      
        1 ttgcaaaatt cctttccctc ccgacagccg aaacccaaac acaggttttc gtctatttcc
       61 gctaccaatc actccctaat tctacccaaa taccccctta atcctccccg gatacccgat
      121 aatcaggcat ccgggttacc ttttaggcgg caacaggcgc acttagcctg agacctttgc
      181 aaatttgtcg gtttcggggt cgtattggta gcctcgtgcc tgtatgtctt ctttgaaagt
      241 ttcgtatacg tcgtgggcta aaagggctgt tccgacatag ggaaccgccc ttgtgctgaa
      301 tttcgcgcct aagcgggcaa gtttgccgac ccccgccaat acgccggcgc gggaaacgct
      361 ggcggttatt ttggcgttga ttcgggcttt tgcgcccgta gggatgtgct caaaatttgc
      421 cgcttctatg aatttggcaa aactcttaga acttgaatct aatttaaaac cacttgattt
      481 taaattatta cttgattgaa atttaatttg tgatctttct aatcttacag gttcagaata
      541 agaattactc gaacatagaa ttaaaatcag aacta
//
LOCUS       DAXIFD010000290          547 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.290, whole genome shotgun sequence.
ACCESSION   DAXIFD010000290 DAXIFD010000000
VERSION     DAXIFD010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.290"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            116..547
                     /locus_tag="ACFOCN_002072"
                     /pseudo
     CDS             116..547
                     /locus_tag="ACFOCN_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581361.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="opacity family porin"
BASE COUNT          161 a          148 c          112 g          126 t
ORIGIN      
        1 ttgttcatcc gctatattgt gttgaaacat cgccacaaac ctgatatagt ccgctcctgc
       61 aacatcattg aaaattgttc tttttaatca gttaaaaccg aatacggagt cgaaaatgaa
      121 tccagccccc aaaaaccttc tcttctcttc tcttctcttc tcttctcttc tcttccgcag
      181 cgcaggcggc aagtgaagac ggcagccgca gcccgtatta tgtgcaggcg gatttagcct
      241 acgccgccga acgcattacc cacgattatc cgaaaccaac cggtacagac aaagacaaaa
      301 taagcacagt aagcgattat ttcagaaaca tccgtgcgca ttccatccac ccccgggtgt
      361 cggtcggcta cgatttcggc ggctggagga tagcggcaga ttatgccagt tacagaaaat
      421 ggaacaacaa taaatattcc gtcaacacaa aagaggtgca aagacatagc aatggcaaca
      481 ggcaagacct gaagacggaa aatcaggaaa acggtacgtt ccacgccgtc tcttctctcg
      541 gcttatc
//
LOCUS       DAXIFD010000291          530 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.291, whole genome shotgun sequence.
ACCESSION   DAXIFD010000291 DAXIFD010000000
VERSION     DAXIFD010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.291"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            32..394
                     /locus_tag="ACFOCN_002073"
     CDS             32..394
                     /locus_tag="ACFOCN_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HFC6971145.1"
                     /translation="MNQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATEGSR
                     TQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQESEQDRRERLLSLTEKGKAHAAPLTE
                     SAQEFSDKETFAKFPKIP"
     gene            425..>530
                     /locus_tag="ACFOCN_002074"
     CDS             425..>530
                     /locus_tag="ACFOCN_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6971146.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIE"
BASE COUNT          164 a          144 c          114 g          108 t
ORIGIN      
        1 cgcacaaatt tagtcaatat caagaccaat tatgaaccaa ctcgaccaac ttggcacccg
       61 tatcaacctg atttgcaatg tcttcgacaa atggatcggg cagcaggatc tgaattacaa
      121 cctctttgcc gtactttata ccctggcaac cgaaggcagc cgcacgcaaa agcatatcgg
      181 cgaaaagtgg agcctgccca aacagaccgt ttcaggcgta tgcaaaaccc ttgccggaca
      241 agggttgatt gaatggcagg aaagcgaaca ggaccggcgc gaacggttgc tgtcgctgac
      301 cgaaaaaggc aaagcccatg ccgcaccttt aacagaaagc gcgcaggaat tcagcgacaa
      361 agagaccttt gcaaaattcc ccaaaatccc ctaaattccc accaagacat ttaggagatt
      421 ttccatgagc accttctttc aacaaaccgc gcaagccatg attgctaaac acatcgaccg
      481 tttccctcta ttgaagttgg atcaagtgat tgattggcag ccgatcgaac
//
LOCUS       DAXIFD010000292          515 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.292, whole genome shotgun sequence.
ACCESSION   DAXIFD010000292 DAXIFD010000000
VERSION     DAXIFD010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.292"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..146)
                     /locus_tag="ACFOCN_002075"
     CDS             complement(<1..146)
                     /locus_tag="ACFOCN_002075"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HFC6971147.1"
                     /translation="MQNSAVLINTFEVPQGKEAETLAAWQKSRDFLKTQPGYIGTRLH
                     QNIV"
     gene            complement(169..354)
                     /locus_tag="ACFOCN_002076"
     CDS             complement(169..354)
                     /locus_tag="ACFOCN_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971148.1"
                     /translation="MGVCLDACCSAAGIARQIGKGGEIHGTLAFSLLFLSLGHIGMVA
                     YHHIKGESVLPRMLGKS"
BASE COUNT          122 a          137 c          132 g          124 t
ORIGIN      
        1 tccactatat tttgatgcag acgtgtaccg atgtagcccg gctgggtttt caggaaatcg
       61 cgtgatttct gccaagcagc caaagtttcg gcttctttgc cctgcggcac ttcaaaggtg
      121 ttgatgagta cagcactgtt ctgcatgatt taaatttaat ccactatatt aagattttcc
      181 gagcattcga ggcagcacgg attcgccttt gatgtggtgg taggcaacca ttccaatgtg
      241 tcccaacgac aaaaacagca atgaaaatgc cagcgtgccg tgaatttctc cgcccttgcc
      301 gatttgacgg gcaatgcctg cggcggaaca gcaagcatca aggcatacgc ccaatgctca
      361 atttggtgac ggcggtgttg gcggggcggt ttttacgttg gcggattccc cacccttgta
      421 tatcggaact cctgtatcat agcaacaaac cgcccgaccg ccacccgcgc ccaccaaaag
      481 cagacaaccg ttgcgtagct cagggagcgg caggg
//
LOCUS       DAXIFD010000293          483 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.293, whole genome shotgun sequence.
ACCESSION   DAXIFD010000293 DAXIFD010000000
VERSION     DAXIFD010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.293"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            332..483
                     /locus_tag="ACFOCN_002077"
                     /pseudo
     CDS             332..483
                     /locus_tag="ACFOCN_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694496.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
BASE COUNT          144 a          119 c          114 g          106 t
ORIGIN      
        1 actcattagt tacctaaaac ttaaaaagca gaaaccttta cgccgtcatt cccacgaaag
       61 tgggaatccg ggaacttaac gttacagtga tttatcggaa acggctgaaa ccgaatgaat
      121 tggattcccg cctgcgcggg aatgacgaat ccatccgtac ggaaacctgc accacgtcat
      181 tcccactaac ctacattccg tcattcccac gaaagtggga atccaggacg aaaaatctcc
      241 agaaaccgtt ttacccgata agtttccgca ccgacaggtc tggattcccg cctgcgcggg
      301 aatgacgatg caggtatttc tgacgattcc cggctatgat gttgaggcag aaatcgaaaa
      361 attcgtttgg atggatgctg tgatttggca gatgccgagc tggtggatgc acgagccttg
      421 gacagtgaaa aaatacatag acgaagtatt aaccgctgga cacggcaaac tctaccaaag
      481 cga
//
LOCUS       DAXIFD010000294          458 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.294, whole genome shotgun sequence.
ACCESSION   DAXIFD010000294 DAXIFD010000000
VERSION     DAXIFD010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.294"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..77)
                     /locus_tag="ACFOCN_002078"
     CDS             complement(<1..77)
                     /locus_tag="ACFOCN_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6971149.1"
                     /translation="MRKSRLSQYKQNKLIELFVTGVTART"
     gene            144..443
                     /locus_tag="ACFOCN_002079"
     CDS             144..443
                     /locus_tag="ACFOCN_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971150.1"
                     /translation="MKDFDEVCEKWEKSFKENGKEIEYNQKYSRIYGEVRGAGFNGDI
                     GEKLHRCAVMEWAENETETFAKFLSLPTAETQTQVFSCFQLFSPQIPPNFTQIPP"
BASE COUNT          141 a           94 c           84 g          139 t
ORIGIN      
        1 gttcttgcag ttacacctgt gacaaacagt tcaatgagtt tattttgttt atactggctt
       61 agacgacttt ttctcatagg gataattcta acttaatttg aatttcccta gttatctagg
      121 acagcccctt aaaaaatatc cctttgaaag attttgatga agtttgtgaa aagtgggaga
      181 aatcctttaa agaaaatgga aaagaaattg aatataatca aaaatattca agaatttatg
      241 gtgaagttcg tggagctggc tttaatggcg atatcggaga aaagctacat cgttgtgccg
      301 tgatggaatg ggctgaaaat gagaccgaga cctttgcaaa attcctttcc ctcccgacag
      361 ccgaaaccca aacacaggtt ttcagctgtt ttcagctgtt ttcgccccaa atacctccta
      421 attttaccca aataccccct taatcctccc cggacacc
//
LOCUS       DAXIFD010000295          442 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.295, whole genome shotgun sequence.
ACCESSION   DAXIFD010000295 DAXIFD010000000
VERSION     DAXIFD010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.295"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            <1..260
                     /locus_tag="ACFOCN_002080"
     CDS             <1..260
                     /locus_tag="ACFOCN_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6971151.1"
                     /translation="RNDTAKDDTVAADTDTAKKIDTKHLPSTCRDDSSTGCIETPRAD
                     FKHFQKISRYRVLPESRHMAEKLRHSRAGGNLGLSARKLIG"
     gene            319..442
                     /locus_tag="ACFOCN_002081"
                     /pseudo
     CDS             319..442
                     /locus_tag="ACFOCN_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349130.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
BASE COUNT          129 a          128 c          104 g           81 t
ORIGIN      
        1 cgcgcaacga caccgccaaa gacgacaccg tcgccgccga caccgacacc gccaagaaga
       61 tcgacaccaa gcacctgccg tcaacctgcc gcgatgattc atctaccggt tgcatagaaa
      121 caccacgcgc cgacttcaaa cacttccaaa aaatcagccg ttaccgagta ttgcccgaat
      181 cacggcacat ggccgaaaaa cttcgtcatt cccgcgcagg cgggaatcta ggtctgtcgg
      241 cacggaaact tatcgggtaa aacggtttct tgagattttg cgttctagat tcccactttc
      301 gtgggaatga cgggatttaa tgatgccgcc ggcgtggcat ccgcctccga catcaaaggc
      361 aaatatgttg agaaagttga agtcaaaaac ggcgtcgtta ccgccgaaat gaaatcaagc
      421 ggcgtaaaca aagaaatcca ag
//
LOCUS       DAXIFD010000296          436 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.296, whole genome shotgun sequence.
ACCESSION   DAXIFD010000296 DAXIFD010000000
VERSION     DAXIFD010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.296"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(1..375)
                     /locus_tag="ACFOCN_002082"
                     /pseudo
     CDS             complement(1..375)
                     /locus_tag="ACFOCN_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          102 a           81 c          141 g          112 t
ORIGIN      
        1 gttaatcagt ttgagcaatt cggacagggt gtcgtcttgc gccagccagt tgcggtaacg
       61 gcataaggtg ctgtaatcgg ggatgctcag ttcgtcaaaa cggcaaaaca ggttgaaatc
      121 gatgcgggta atgaggctgt gttcgagttc gggatcggag agactgtgcc attgtccgag
      181 caggacggct ttgaacatgg acaacagggg ataggcggga cggccgcggt ggtctcagag
      241 gtaacgggtc ctttgacggt tcaggtattg ctcgatcagt tgccaatcaa tcatctgatc
      301 caacttcaat agcgggaaac ggtcgatgtg tttggcaatc atggcttgcg cggtttgttg
      361 aaagaaggtg ctcatggaac atctcctaaa tgtcttggtg ggaatttagg ggattttggg
      421 gaattttgca aaggtc
//
LOCUS       DAXIFD010000297          403 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.297, whole genome shotgun sequence.
ACCESSION   DAXIFD010000297 DAXIFD010000000
VERSION     DAXIFD010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.297"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..>403)
                     /locus_tag="ACFOCN_002083"
     CDS             complement(<1..>403)
                     /locus_tag="ACFOCN_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6971152.1"
                     /translation="TDKVVALLKANGVPAALVDMGEIRGFDTNGKRTWNVGIRNLDDE
                     EGVLANITMKDKAFATSGGYGTVMDKAGRFTHLFDPRTGAGTPRYKSMSVMADDAAVA
                     DALSTAFSIMDLPLIRSVAESRRLKVWLVMP"
BASE COUNT           90 a          137 c           89 g           87 t
ORIGIN      
        1 tccggcatga ccagccaaac cttaagccgc ctgctttcgg caaccgaccg tatcaagggc
       61 aaatccataa tggaaaacgc cgtcgacaag gcatcggcaa ccgccgcatc atccgccatc
      121 acgctcatgc ttttataacg cggcgtaccc gcgccggtcc gcggatcgaa caaatgggta
      181 aacctgcccg ccttgtccat caccgtccca tagccgcccg aagtggcaaa cgccttgtct
      241 ttcatcgtga tatttgccaa cacgccttct tcgtcgtcca gattgcggat gccgacattc
      301 caagtccgtt taccgtttgt atcaaatccc ctgatttcgc ccatatcgac cagcgcggca
      361 ggcacgccgt ttgctttaag cagcgcaaca accttgtccg tga
//
LOCUS       DAXIFD010000298          397 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.298, whole genome shotgun sequence.
ACCESSION   DAXIFD010000298 DAXIFD010000000
VERSION     DAXIFD010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.298"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
BASE COUNT          110 a           90 c           86 g          111 t
ORIGIN      
        1 tttttgaatt tcgggcaacg cttgaatctt cattccgcgc aggcggaaat tatcggtgcg
       61 gtacggcaac ttttttcgat atgaaaagac cgtcattcct gtaaaaacaa aaaatcaaaa
      121 acagaaaatt gaaattcgtc attcccgcgc aggcgggaat ctaggacgta aaatctatag
      181 tggattaaca aaaaccagta cagcgttgcc ttgacttagc tcgaagagaa cgattctcta
      241 aggtgctgaa gcaccgagtg agtcggttcc gcactatccg tactgtctgc ggcttcgtcg
      301 ctttctcctg atttttgtta atccactata aagaaaccgt ttttctcgat aagtttccgt
      361 gccgacagac ctggattccc actttcgtgg gaatgac
//
LOCUS       DAXIFD010000299          376 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.299, whole genome shotgun sequence.
ACCESSION   DAXIFD010000299 DAXIFD010000000
VERSION     DAXIFD010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.299"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
BASE COUNT          104 a          100 c           75 g           97 t
ORIGIN      
        1 cgttcccacg gtcaggattt cagattgcgg acatctgtca gaaaagacaa aaaaccttcc
       61 gccgtcattc cctacaggcg agaatccgat ccgttgaaat tcggttgttt taaataaatt
      121 cttacagctt tgattttctg tttttccgat aacgccgtaa ctttgaaacg cgaaagcggt
      181 aatccgatcc gttgggattt tgcaacttca aatcaatccg caaactgaaa tcccgtcatt
      241 cccgcgcagt cgtgaatccg aacgcgtccg cacgaaaacc tgcatcccgt cattcccacg
      301 gaagtgggaa tctaggacgt aaaatctcaa gaaaccgttt tatccgataa gtttccgcac
      361 cgacagacct ggattc
//
LOCUS       DAXIFD010000300          372 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.300, whole genome shotgun sequence.
ACCESSION   DAXIFD010000300 DAXIFD010000000
VERSION     DAXIFD010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.300"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..367)
                     /locus_tag="ACFOCN_002084"
     CDS             complement(<1..367)
                     /locus_tag="ACFOCN_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 41 family protein"
                     /protein_id="HFC6971153.1"
                     /translation="MCEFKDFRRNIPCFEEYDENSFIGKWYDDGVWDDEEYWKLENAL
                     IEVRRKYPYPMDIPRDIVIGIGTIIEFLMVPNWKLFTIKSSPWLPKSVKIDERYERFR
                     VMLRYIFTEIDIVNVRFDYY"
BASE COUNT          124 a           85 c           46 g          117 t
ORIGIN      
        1 tgtaataatc aaatcgcacg ttgactatgt ctatctcggt aaaaatataa cggagcatta
       61 ctctgaacct ttcataacgc tcatcaattt tgacactttt aggcaaccaa ggggaagatt
      121 taattgtaaa aagtttccaa tttggaacca ttaaaaactc aataatggta ccgattccaa
      181 tcacgatatc ccttggtata tccatcggat aaggatattt tctcctaacc tcgattaaag
      241 cattctccaa tttccaatat tcttcatcat cccacacccc gtcatcatac catttgccaa
      301 taaatgaatt ttcgtcatac tcttcaaaac aagggatgtt tcttctaaaa tccttgaact
      361 cgcacataat aa
//
LOCUS       DAXIFD010000301          364 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.301, whole genome shotgun sequence.
ACCESSION   DAXIFD010000301 DAXIFD010000000
VERSION     DAXIFD010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.301"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            complement(<1..283)
                     /locus_tag="ACFOCN_002085"
     CDS             complement(<1..283)
                     /locus_tag="ACFOCN_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6971154.1"
                     /translation="MLKQTTLLAACASFAALLGGCATQQPAPVIAGNSGMQDAPSSAV
                     YNNPYGATPYSPAPAGDAPYVPPVQSAPVYTPPAYVPPSAPAVSGTYVPS"
BASE COUNT           97 a           91 c          108 g           68 t
ORIGIN      
        1 aagaaggaac gtatgtaccc gaaacggcag gtgcagacgg cggaacataa gcaggaggcg
       61 tataaaccgg cgcgctttgc accggcggca cataaggcgc atcgccggca ggagccgggc
      121 tgtacggcgt tgctccatag gggttgttgt aaactgccga agacggcgcg tcctgcatac
      181 ctgaattgcc tgcaatgaca ggagcaggct gttgggtggc gcaaccgccc aacagtgcgg
      241 caaaggaggc gcaagccgcc aaaagtgtcg tttgtttcaa cataagataa ccttcatgtt
      301 ccgatatata gcctgaatgc ggtatatcat aataaaaatg cgcgttcttc tcaagcgcaa
      361 agcc
//
LOCUS       DAXIFD010000302          361 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain cc11 isolate EXNM776
            SAMN43217991-rid22927333.denovo.302, whole genome shotgun sequence.
ACCESSION   DAXIFD010000302 DAXIFD010000000
VERSION     DAXIFD010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN43217991
            Sequence Read Archive: SRR30268291
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 20-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002330419.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002330419.1
            Genome Coverage       :: 77x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 16:09:56
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,087
            CDSs (total)                      :: 2,039
            Genes (coding)                    :: 1,928
            CDSs (with protein)               :: 1,928
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 49 of 111
            Pseudo Genes (incomplete)         :: 66 of 111
            Pseudo Genes (internal stop)      :: 15 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN43217991-rid22927333.denovo.302"
                     /strain="cc11"
                     /isolate="EXNM776"
                     /isolation_source="blood/CSF"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Australia: Western Australia"
                     /lat_lon="32.221725 S 116.0072 E"
                     /collection_date="2017-11"
                     /collected_by="University of Western Australia"
                     /note="genotype: MenW:cc11"
     gene            103..219
                     /locus_tag="ACFOCN_002086"
                     /pseudo
     CDS             103..219
                     /locus_tag="ACFOCN_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            281..>361
                     /locus_tag="ACFOCN_002087"
     CDS             281..>361
                     /locus_tag="ACFOCN_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMP12 family DNA mimic protein"
                     /protein_id="HFC6971155.1"
                     /translation="MNEHNLLIFCLKDNVSISEYTEMIDWA"
BASE COUNT          123 a           61 c           75 g          102 t
ORIGIN      
        1 gataaatgtt agctaggtaa ggtgggcact tgttgcccac cttttgccgt atattaaaaa
       61 tccttttcag gctggaactg ggtgggcatc aatgccaacc ctaattgtgc tgatgaagca
      121 ggaaaactga tatgggaaaa cgaccccaat aaaaattggt gggctaaccg tatggatgat
      181 attcgcggca tcatccaagg tgcggttaat cctttaattt acaaggtaag caagcaaaag
      241 attatttaca acaacaaact catattaaga acttagacaa atgaatgaac acaacctgtt
      301 aattttctgt ttaaaagaca atgtttcaat tagtgaatat actgaaatga ttgattgggc
      361 t
//
